Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054155.t1 | XP_013466413.1 | 98.8 | 330 | 4 | 0 | 7 | 336 | 61 | 390 | 1.20E-190 | 675.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054155.t1 | Q84VY3 | 80.0 | 335 | 66 | 1 | 1 | 334 | 55 | 389 | 2.4e-160 | 566.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054155.t1 | A0A072VEM1 | 98.8 | 330 | 4 | 0 | 7 | 336 | 61 | 390 | 8.4e-191 | 675.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054155 | MS.gene32324 | 0.814188 | 1.75E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054155 | MS.gene65325 | PPI |
| MS.gene054155 | MS.gene008720 | PPI |
| MS.gene054155 | MS.gene47524 | PPI |
| MS.gene054155 | MS.gene86552 | PPI |
| MS.gene054155 | MS.gene26574 | PPI |
| MS.gene054155 | MS.gene64881 | PPI |
| MS.gene054155 | MS.gene39580 | PPI |
| MS.gene054155 | MS.gene72651 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054155.t1 | MTR_1g029150 | 98.810 | 336 | 4 | 0 | 1 | 336 | 55 | 390 | 0.0 | 693 |
| MS.gene054155.t1 | MTR_3g090100 | 75.595 | 336 | 79 | 1 | 1 | 336 | 34 | 366 | 0.0 | 544 |
| MS.gene054155.t1 | MTR_3g090010 | 75.150 | 334 | 80 | 1 | 1 | 334 | 38 | 368 | 0.0 | 531 |
| MS.gene054155.t1 | MTR_3g090020 | 74.107 | 336 | 84 | 1 | 1 | 336 | 34 | 366 | 0.0 | 530 |
| MS.gene054155.t1 | MTR_3g089025 | 72.917 | 336 | 88 | 1 | 1 | 336 | 37 | 369 | 0.0 | 525 |
| MS.gene054155.t1 | MTR_5g024130 | 71.131 | 336 | 93 | 2 | 1 | 336 | 62 | 393 | 0.0 | 514 |
| MS.gene054155.t1 | MTR_4g087440 | 71.131 | 336 | 93 | 2 | 1 | 336 | 62 | 393 | 0.0 | 514 |
| MS.gene054155.t1 | MTR_3g090110 | 47.863 | 117 | 38 | 1 | 178 | 294 | 2 | 95 | 1.96e-28 | 106 |
| MS.gene054155.t1 | MTR_3g089980 | 60.204 | 98 | 26 | 2 | 197 | 294 | 6 | 90 | 2.85e-28 | 105 |
| MS.gene054155.t1 | MTR_3g089973 | 41.958 | 143 | 39 | 1 | 178 | 320 | 2 | 100 | 3.38e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054155.t1 | AT1G43800 | 80.000 | 335 | 66 | 1 | 1 | 334 | 55 | 389 | 0.0 | 573 |
| MS.gene054155.t1 | AT3G02630 | 70.659 | 334 | 95 | 2 | 1 | 334 | 64 | 394 | 0.0 | 508 |
| MS.gene054155.t1 | AT2G43710 | 69.940 | 336 | 97 | 2 | 1 | 336 | 70 | 401 | 1.73e-179 | 503 |
| MS.gene054155.t1 | AT2G43710 | 69.940 | 336 | 97 | 2 | 1 | 336 | 70 | 401 | 1.79e-179 | 503 |
| MS.gene054155.t1 | AT5G16240 | 68.563 | 334 | 102 | 2 | 1 | 334 | 62 | 392 | 9.91e-177 | 495 |
| MS.gene054155.t1 | AT5G16230 | 67.359 | 337 | 108 | 2 | 1 | 336 | 66 | 401 | 2.14e-171 | 482 |
| MS.gene054155.t1 | AT3G02610 | 68.249 | 337 | 101 | 4 | 4 | 336 | 77 | 411 | 2.36e-169 | 477 |
| MS.gene054155.t1 | AT3G02610 | 68.249 | 337 | 101 | 4 | 4 | 336 | 79 | 413 | 2.42e-169 | 477 |
| MS.gene054155.t1 | AT3G02620 | 67.062 | 337 | 105 | 4 | 4 | 336 | 69 | 403 | 1.64e-166 | 470 |
| MS.gene054155.t1 | AT3G02620 | 67.062 | 337 | 105 | 4 | 4 | 336 | 72 | 406 | 1.90e-166 | 470 |
| MS.gene054155.t1 | AT5G16230 | 66.871 | 326 | 106 | 2 | 12 | 336 | 1 | 325 | 2.60e-165 | 464 |
| MS.gene054155.t1 | AT3G02620 | 66.261 | 329 | 105 | 4 | 12 | 336 | 1 | 327 | 6.38e-161 | 452 |
Find 96 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTAACGGGTGAGGGAAAA+AGG | 0.240677 | 1.3:+15130057 | MS.gene054155:CDS |
| TGTTGTGTTGGTGGGTGATA+TGG | 0.264457 | 1.3:+15128282 | MS.gene054155:CDS |
| GTGTATACGAACCCCAAGTA+TGG | 0.306256 | 1.3:-15129666 | None:intergenic |
| GTCCAAACGGCCCAGGGGCT+TGG | 0.306927 | 1.3:-15128382 | None:intergenic |
| AGGACTTATTTGTATCTTAC+TGG | 0.314626 | 1.3:+15128448 | MS.gene054155:CDS |
| GGGCCGTTTGGACACGGGCT+TGG | 0.341816 | 1.3:+15128392 | MS.gene054155:CDS |
| TCTTACTGGAAGGGTTGATA+TGG | 0.365902 | 1.3:+15128462 | MS.gene054155:CDS |
| GTCCAAGCCCCTGGGCCGTT+TGG | 0.372357 | 1.3:+15128380 | MS.gene054155:CDS |
| GATTAGCACCTAGGATTAGA+AGG | 0.373141 | 1.3:+15130099 | MS.gene054155:CDS |
| ACGTATCAGAGTATGATTAA+TGG | 0.377224 | 1.3:+15128325 | MS.gene054155:CDS |
| GGCTGCCAGCATTGTTCCAC+TGG | 0.386228 | 1.3:-15128160 | None:intergenic |
| TTGGTTCCAGTCCAAGCCCC+TGG | 0.389003 | 1.3:+15128371 | MS.gene054155:CDS |
| CACATGGGGTCAAGTTTAGT+TGG | 0.400607 | 1.3:+15130162 | MS.gene054155:CDS |
| TTTAATCGAACGGTGGAGAT+TGG | 0.401193 | 1.3:+15130022 | MS.gene054155:CDS |
| GATGGTGTTGGTGATGAGAT+TGG | 0.415369 | 1.3:+15128352 | MS.gene054155:CDS |
| ATTTGATGAATTTACTGATC+AGG | 0.419139 | 1.3:+15128213 | MS.gene054155:CDS |
| GACAGAAAACAACCCATACT+TGG | 0.423746 | 1.3:+15129653 | MS.gene054155:CDS |
| GCGAAGTGCTCGAATAGCTT+AGG | 0.427800 | 1.3:-15129939 | None:intergenic |
| GCCCCTGGGCCGTTTGGACA+CGG | 0.428444 | 1.3:+15128386 | MS.gene054155:CDS |
| AATTCATCAAATGGCAATGA+AGG | 0.430836 | 1.3:-15128202 | None:intergenic |
| ATACAAATGTGGCTCGCTCT+TGG | 0.432597 | 1.3:-15129695 | None:intergenic |
| AACGGCCCAGGGGCTTGGAC+TGG | 0.437323 | 1.3:-15128377 | None:intergenic |
| AATGGCTAGCATTGCTTCTG+TGG | 0.440900 | 1.3:-15129856 | None:intergenic |
| TCAAATGGCAATGAAGGGTC+AGG | 0.443060 | 1.3:-15128196 | None:intergenic |
| AGCCCGTGTCCAAACGGCCC+AGG | 0.444864 | 1.3:-15128389 | None:intergenic |
| CAATGATTACGCTGATATCT+TGG | 0.445925 | 1.3:+15129995 | MS.gene054155:CDS |
| TTTGCATTGGACAGGACCCC+GGG | 0.454311 | 1.3:+15129631 | MS.gene054155:intron |
| TGATCAGTAAATTCATCAAA+TGG | 0.459663 | 1.3:-15128211 | None:intergenic |
| ATAGACATGGGGATTTGCTT+AGG | 0.460553 | 1.3:+15128428 | MS.gene054155:CDS |
| CCACATATGCGCGCAAGCAC+TGG | 0.472837 | 1.3:-15129759 | None:intergenic |
| CAAGATATCAGCGTAATCAT+TGG | 0.473762 | 1.3:-15129994 | None:intergenic |
| ATTCGAGCACTTCGCGGCCG+TGG | 0.474737 | 1.3:+15129947 | MS.gene054155:CDS |
| CGAAGTGCTCGAATAGCTTA+GGG | 0.481594 | 1.3:-15129938 | None:intergenic |
| CCAGTGCTTGCGCGCATATG+TGG | 0.484813 | 1.3:+15129759 | MS.gene054155:CDS |
| TCTTGCAACCTTCTAATCCT+AGG | 0.486803 | 1.3:-15130107 | None:intergenic |
| AACACAACAAAATACTCATC+AGG | 0.489365 | 1.3:-15128268 | None:intergenic |
| ATGGCTAGCATTGCTTCTGT+GGG | 0.489402 | 1.3:-15129855 | None:intergenic |
| CCGGCACACCTTATGTATGA+TGG | 0.493314 | 1.3:+15129909 | MS.gene054155:CDS |
| GGTCTTGTCCATCATACATA+AGG | 0.494290 | 1.3:-15129917 | None:intergenic |
| AAAACTGTGCAGTATCTCAT+TGG | 0.496968 | 1.3:+15128496 | MS.gene054155:CDS |
| GCGGCCGTGGCACAGCGCAC+CGG | 0.504431 | 1.3:+15129960 | MS.gene054155:CDS |
| GCCCGTGTCCAAACGGCCCA+GGG | 0.508489 | 1.3:-15128388 | None:intergenic |
| CCCCTGGGCCGTTTGGACAC+GGG | 0.511239 | 1.3:+15128387 | MS.gene054155:CDS |
| AACTCCGGTGCGCTGTGCCA+CGG | 0.520106 | 1.3:-15129964 | None:intergenic |
| AGTCCAAGCCCGTGTCCAAA+CGG | 0.523809 | 1.3:-15128395 | None:intergenic |
| AGTATGATTAATGGTCTTGA+TGG | 0.523991 | 1.3:+15128334 | MS.gene054155:CDS |
| ACAGAAAACAACCCATACTT+GGG | 0.528774 | 1.3:+15129654 | MS.gene054155:CDS |
| TAAAGCCAGTGGAACAATGC+TGG | 0.530542 | 1.3:+15128155 | MS.gene054155:CDS |
| TTGTGTGTGGATTAGCACCT+AGG | 0.531113 | 1.3:+15130090 | MS.gene054155:CDS |
| TTTCTCCATCATATCACCAA+TGG | 0.532359 | 1.3:-15129874 | None:intergenic |
| TAAGCTATTCGAGCACTTCG+CGG | 0.535770 | 1.3:+15129941 | MS.gene054155:CDS |
| GTTTGCATTGGACAGGACCC+CGG | 0.538725 | 1.3:+15129630 | MS.gene054155:intron |
| GGATTAGAAGGTTGCAAGAG+AGG | 0.539517 | 1.3:+15130111 | MS.gene054155:CDS |
| GCTAGCCATTGGTGATATGA+TGG | 0.539965 | 1.3:+15129869 | MS.gene054155:CDS |
| TTATTTGTATCTTACTGGAA+GGG | 0.546012 | 1.3:+15128453 | MS.gene054155:CDS |
| CCATCATACATAAGGTGTGC+CGG | 0.547215 | 1.3:-15129909 | None:intergenic |
| GTGCAGTATCTCATTGGAGC+TGG | 0.547818 | 1.3:+15128502 | MS.gene054155:CDS |
| CTTATTTGTATCTTACTGGA+AGG | 0.548136 | 1.3:+15128452 | MS.gene054155:CDS |
| TTTCAAATCACTAGAAAACT+GGG | 0.554024 | 1.3:+15128108 | MS.gene054155:CDS |
| CGTCGAGAAGCTTCTAGAAG+TGG | 0.554197 | 1.3:+15129830 | MS.gene054155:CDS |
| TGTTCCACTGGCTTTAGTAG+TGG | 0.556461 | 1.3:-15128148 | None:intergenic |
| TGGTTCCAGTCCAAGCCCCT+GGG | 0.557804 | 1.3:+15128372 | MS.gene054155:CDS |
| ACGGCTCGCTTAGCGAAAGA+AGG | 0.562132 | 1.3:+15129729 | MS.gene054155:CDS |
| CTTGAAGGATTAACGGGTGA+GGG | 0.573418 | 1.3:+15130050 | MS.gene054155:CDS |
| ACAGAAGCAATGCTAGCCAT+TGG | 0.575606 | 1.3:+15129858 | MS.gene054155:CDS |
| ATTAATGGTCTTGATGGTGT+TGG | 0.585459 | 1.3:+15128340 | MS.gene054155:CDS |
| TGTATACGAACCCCAAGTAT+GGG | 0.585482 | 1.3:-15129665 | None:intergenic |
| ACAGCGCACCGGAGTTTACA+CGG | 0.592150 | 1.3:+15129971 | MS.gene054155:CDS |
| ACTTGAAGGATTAACGGGTG+AGG | 0.592643 | 1.3:+15130049 | MS.gene054155:CDS |
| ATCATTGGCCGTGTAAACTC+CGG | 0.595715 | 1.3:-15129979 | None:intergenic |
| GATTAGAAGGTTGCAAGAGA+GGG | 0.596681 | 1.3:+15130112 | MS.gene054155:CDS |
| CAACTAAACTTGACCCCATG+TGG | 0.598754 | 1.3:-15130161 | None:intergenic |
| TGAATTTACTGATCAGGTGA+AGG | 0.600944 | 1.3:+15128219 | MS.gene054155:CDS |
| GTATCTCATTGGAGCTGGCA+TGG | 0.601721 | 1.3:+15128507 | MS.gene054155:CDS |
| ATTCATCAAATGGCAATGAA+GGG | 0.615235 | 1.3:-15128201 | None:intergenic |
| CAAATGGCAATGAAGGGTCA+GGG | 0.622115 | 1.3:-15128195 | None:intergenic |
| ATTTGTATCACACGGAAACA+CGG | 0.623224 | 1.3:+15129710 | MS.gene054155:CDS |
| CGAGCCACATTTGTATCACA+CGG | 0.623581 | 1.3:+15129702 | MS.gene054155:CDS |
| TTAATCATACTCTGATACGT+CGG | 0.624523 | 1.3:-15128322 | None:intergenic |
| GTTGGTGGGTGATATGGTGA+CGG | 0.629390 | 1.3:+15128288 | MS.gene054155:CDS |
| CAACAAAATACTCATCAGGA+AGG | 0.632422 | 1.3:-15128264 | None:intergenic |
| CTCGTAAGATGAAACCACAT+GGG | 0.643536 | 1.3:+15130147 | MS.gene054155:CDS |
| CTGCTGAAGAAAATAGACAT+GGG | 0.645814 | 1.3:+15128416 | MS.gene054155:CDS |
| GCTCGCTTAGCGAAAGAAGG+CGG | 0.654478 | 1.3:+15129732 | MS.gene054155:CDS |
| GCTCGTAAGATGAAACCACA+TGG | 0.658763 | 1.3:+15130146 | MS.gene054155:CDS |
| TGCTGAAGAAAATAGACATG+GGG | 0.668352 | 1.3:+15128417 | MS.gene054155:CDS |
| CCCGTGTCCAAACGGCCCAG+GGG | 0.670198 | 1.3:-15128387 | None:intergenic |
| ACTGCTGAAGAAAATAGACA+TGG | 0.671679 | 1.3:+15128415 | MS.gene054155:CDS |
| TTTACCACTACTAAAGCCAG+TGG | 0.671826 | 1.3:+15128144 | MS.gene054155:CDS |
| TGGCTAGCATTGCTTCTGTG+GGG | 0.673942 | 1.3:-15129854 | None:intergenic |
| GGTCCTTCGTGCGATCACGA+AGG | 0.703598 | 1.3:-15128243 | None:intergenic |
| GTTTCCGTGTGATACAAATG+TGG | 0.709781 | 1.3:-15129706 | None:intergenic |
| GGTCCTTCGTGATCGCACGA+AGG | 0.710721 | 1.3:+15128240 | MS.gene054155:CDS |
| CAGAAAACAACCCATACTTG+GGG | 0.710757 | 1.3:+15129655 | MS.gene054155:CDS |
| GGGTCAGGGAGAAAATTCTG+TGG | 0.712956 | 1.3:-15128181 | None:intergenic |
| TCGTAAGATGAAACCACATG+GGG | 0.759922 | 1.3:+15130148 | MS.gene054155:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAATAATTAGATAAAT+TGG | + | chr1.3:15128613-15128632 | MS.gene054155:intron | 10.0% |
| !! | TAAAAAATAAATCTATGATA+GGG | + | chr1.3:15128948-15128967 | MS.gene054155:intron | 10.0% |
| !! | TTAAAAAATAAATCTATGAT+AGG | + | chr1.3:15128947-15128966 | MS.gene054155:intron | 10.0% |
| !! | AATACATTATACACATAATA+TGG | - | chr1.3:15128821-15128840 | None:intergenic | 15.0% |
| !! | TTAAGTAGTATGTTATTATA+TGG | + | chr1.3:15129393-15129412 | MS.gene054155:intron | 15.0% |
| !!! | GTGAAAAATCAATTAATTTT+TGG | - | chr1.3:15129421-15129440 | None:intergenic | 15.0% |
| !! | ATATGATCTATACTAGTTAA+TGG | - | chr1.3:15128897-15128916 | None:intergenic | 20.0% |
| !! | CGTATTATTAATTAAAGTGA+TGG | + | chr1.3:15128650-15128669 | MS.gene054155:intron | 20.0% |
| !!! | AATGCTCTGTTTTTATTTTT+TGG | + | chr1.3:15129040-15129059 | MS.gene054155:intron | 20.0% |
| !!! | AATTGATTTTTCATGTGTTA+CGG | + | chr1.3:15129463-15129482 | MS.gene054155:intron | 20.0% |
| !!! | TAGTTGGATTTTTAATAATG+AGG | + | chr1.3:15130178-15130197 | MS.gene054155:CDS | 20.0% |
| ! | ATCTATCTAAATAGAATCCT+CGG | + | chr1.3:15128986-15129005 | MS.gene054155:intron | 25.0% |
| ! | ATTTGATGAATTTACTGATC+AGG | + | chr1.3:15128213-15128232 | MS.gene054155:CDS | 25.0% |
| ! | CAAAACAGAACATTATGTTT+CGG | - | chr1.3:15129067-15129086 | None:intergenic | 25.0% |
| ! | TCATGTAACATAAAAGTGAT+GGG | - | chr1.3:15129135-15129154 | None:intergenic | 25.0% |
| ! | TGATCAGTAAATTCATCAAA+TGG | - | chr1.3:15128214-15128233 | None:intergenic | 25.0% |
| ! | TTATTTGTATCTTACTGGAA+GGG | + | chr1.3:15128453-15128472 | MS.gene054155:CDS | 25.0% |
| ! | TTCATGTAACATAAAAGTGA+TGG | - | chr1.3:15129136-15129155 | None:intergenic | 25.0% |
| ! | TTTCAAATCACTAGAAAACT+GGG | + | chr1.3:15128108-15128127 | MS.gene054155:CDS | 25.0% |
| !! | ACTTTTATGTTACATGAATG+AGG | + | chr1.3:15129138-15129157 | MS.gene054155:intron | 25.0% |
| !! | GTAGACATTATTTTCAACTT+AGG | - | chr1.3:15129600-15129619 | None:intergenic | 25.0% |
| !! | TGTACATTTTATTGCAATCT+AGG | + | chr1.3:15128584-15128603 | MS.gene054155:intron | 25.0% |
| !! | TTTTCAAATCACTAGAAAAC+TGG | + | chr1.3:15128107-15128126 | MS.gene054155:CDS | 25.0% |
| !!! | AATTGATTTTTCACATGTGT+CGG | + | chr1.3:15129427-15129446 | MS.gene054155:intron | 25.0% |
| !!! | TTGAAAATTTCTAGCTTTTC+TGG | - | chr1.3:15128094-15128113 | None:intergenic | 25.0% |
| !!! | TTTCAGCATTTTTTCAACTT+AGG | - | chr1.3:15129520-15129539 | None:intergenic | 25.0% |
| AACACAACAAAATACTCATC+AGG | - | chr1.3:15128271-15128290 | None:intergenic | 30.0% | |
| AATTCATCAAATGGCAATGA+AGG | - | chr1.3:15128205-15128224 | None:intergenic | 30.0% | |
| ACGTATCAGAGTATGATTAA+TGG | + | chr1.3:15128325-15128344 | MS.gene054155:CDS | 30.0% | |
| AGGACTTATTTGTATCTTAC+TGG | + | chr1.3:15128448-15128467 | MS.gene054155:CDS | 30.0% | |
| ATTCATCAAATGGCAATGAA+GGG | - | chr1.3:15128204-15128223 | None:intergenic | 30.0% | |
| CATGTAACATAAAAGTGATG+GGG | - | chr1.3:15129134-15129153 | None:intergenic | 30.0% | |
| CTTATTTGTATCTTACTGGA+AGG | + | chr1.3:15128452-15128471 | MS.gene054155:CDS | 30.0% | |
| GAAAAACTTGAAGGATTAAC+GGG | + | chr1.3:15130044-15130063 | MS.gene054155:CDS | 30.0% | |
| GGAAAAACTTGAAGGATTAA+CGG | + | chr1.3:15130043-15130062 | MS.gene054155:CDS | 30.0% | |
| TTAATCATACTCTGATACGT+CGG | - | chr1.3:15128325-15128344 | None:intergenic | 30.0% | |
| ! | AGTATGATTAATGGTCTTGA+TGG | + | chr1.3:15128334-15128353 | MS.gene054155:CDS | 30.0% |
| ! | GCAACATTGTAATTTGTAAG+AGG | - | chr1.3:15128871-15128890 | None:intergenic | 30.0% |
| ! | TCTTGGAGTTTTTAATCGAA+CGG | + | chr1.3:15130012-15130031 | MS.gene054155:CDS | 30.0% |
| ! | TGGAGTACTTTCTAACTAAA+TGG | + | chr1.3:15129568-15129587 | MS.gene054155:intron | 30.0% |
| !! | ACATTGCATTTTGTTTGCAT+TGG | + | chr1.3:15129618-15129637 | MS.gene054155:intron | 30.0% |
| !! | TGATGAGTATTTTGTTGTGT+TGG | + | chr1.3:15128270-15128289 | MS.gene054155:CDS | 30.0% |
| !! | TTAAAGTGATGGATAGTAGT+AGG | + | chr1.3:15128661-15128680 | MS.gene054155:intron | 30.0% |
| !!! | AAAATTTCTAGCTTTTCTGG+TGG | - | chr1.3:15128091-15128110 | None:intergenic | 30.0% |
| AAAACTGTGCAGTATCTCAT+TGG | + | chr1.3:15128496-15128515 | MS.gene054155:CDS | 35.0% | |
| ACAGAAAACAACCCATACTT+GGG | + | chr1.3:15129654-15129673 | MS.gene054155:CDS | 35.0% | |
| ACTGCTGAAGAAAATAGACA+TGG | + | chr1.3:15128415-15128434 | MS.gene054155:CDS | 35.0% | |
| ATTTGTATCACACGGAAACA+CGG | + | chr1.3:15129710-15129729 | MS.gene054155:CDS | 35.0% | |
| CAACAAAATACTCATCAGGA+AGG | - | chr1.3:15128267-15128286 | None:intergenic | 35.0% | |
| CAAGATATCAGCGTAATCAT+TGG | - | chr1.3:15129997-15130016 | None:intergenic | 35.0% | |
| CAATGATTACGCTGATATCT+TGG | + | chr1.3:15129995-15130014 | MS.gene054155:CDS | 35.0% | |
| CTGCTGAAGAAAATAGACAT+GGG | + | chr1.3:15128416-15128435 | MS.gene054155:CDS | 35.0% | |
| GGAGAAAAAAATCACAATGC+CGG | + | chr1.3:15129890-15129909 | MS.gene054155:CDS | 35.0% | |
| TGAATTTACTGATCAGGTGA+AGG | + | chr1.3:15128219-15128238 | MS.gene054155:CDS | 35.0% | |
| TGCTGAAGAAAATAGACATG+GGG | + | chr1.3:15128417-15128436 | MS.gene054155:CDS | 35.0% | |
| TGGAGATTGGAAAAACTTGA+AGG | + | chr1.3:15130035-15130054 | MS.gene054155:CDS | 35.0% | |
| TTTCTCCATCATATCACCAA+TGG | - | chr1.3:15129877-15129896 | None:intergenic | 35.0% | |
| !! | ATTAATGGTCTTGATGGTGT+TGG | + | chr1.3:15128340-15128359 | MS.gene054155:CDS | 35.0% |
| !! | GAGTATTTTGTTGTGTTGGT+GGG | + | chr1.3:15128274-15128293 | MS.gene054155:CDS | 35.0% |
| !! | TGAGTATTTTGTTGTGTTGG+TGG | + | chr1.3:15128273-15128292 | MS.gene054155:CDS | 35.0% |
| CAGAAAACAACCCATACTTG+GGG | + | chr1.3:15129655-15129674 | MS.gene054155:CDS | 40.0% | |
| CTCGTAAGATGAAACCACAT+GGG | + | chr1.3:15130147-15130166 | MS.gene054155:CDS | 40.0% | |
| GACAGAAAACAACCCATACT+TGG | + | chr1.3:15129653-15129672 | MS.gene054155:CDS | 40.0% | |
| GATTAGAAGGTTGCAAGAGA+GGG | + | chr1.3:15130112-15130131 | MS.gene054155:CDS | 40.0% | |
| GATTAGCACCTAGGATTAGA+AGG | + | chr1.3:15130099-15130118 | MS.gene054155:CDS | 40.0% | |
| GTTTCCGTGTGATACAAATG+TGG | - | chr1.3:15129709-15129728 | None:intergenic | 40.0% | |
| TCGTAAGATGAAACCACATG+GGG | + | chr1.3:15130148-15130167 | MS.gene054155:CDS | 40.0% | |
| TCTTGCAACCTTCTAATCCT+AGG | - | chr1.3:15130110-15130129 | None:intergenic | 40.0% | |
| TGTATACGAACCCCAAGTAT+GGG | - | chr1.3:15129668-15129687 | None:intergenic | 40.0% | |
| TTTAATCGAACGGTGGAGAT+TGG | + | chr1.3:15130022-15130041 | MS.gene054155:CDS | 40.0% | |
| TTTACCACTACTAAAGCCAG+TGG | + | chr1.3:15128144-15128163 | MS.gene054155:CDS | 40.0% | |
| ! | ATAGACATGGGGATTTGCTT+AGG | + | chr1.3:15128428-15128447 | MS.gene054155:CDS | 40.0% |
| ! | ATTAACGGGTGAGGGAAAAA+GGG | + | chr1.3:15130058-15130077 | MS.gene054155:CDS | 40.0% |
| ! | GGTCTTGTCCATCATACATA+AGG | - | chr1.3:15129920-15129939 | None:intergenic | 40.0% |
| ! | TGGAGTTTTTAATCGAACGG+TGG | + | chr1.3:15130015-15130034 | MS.gene054155:CDS | 40.0% |
| !! | GCATTTTGTTTGCATTGGAC+AGG | + | chr1.3:15129623-15129642 | MS.gene054155:intron | 40.0% |
| !! | GGATAGTAGTAGGAGTGTTT+AGG | + | chr1.3:15128671-15128690 | MS.gene054155:intron | 40.0% |
| !! | TAGTAGTAGGAGTGTTTAGG+TGG | + | chr1.3:15128674-15128693 | MS.gene054155:intron | 40.0% |
| !! | TCTTACTGGAAGGGTTGATA+TGG | + | chr1.3:15128462-15128481 | MS.gene054155:CDS | 40.0% |
| AATGGCTAGCATTGCTTCTG+TGG | - | chr1.3:15129859-15129878 | None:intergenic | 45.0% | |
| ACAGAAGCAATGCTAGCCAT+TGG | + | chr1.3:15129858-15129877 | MS.gene054155:CDS | 45.0% | |
| ATACAAATGTGGCTCGCTCT+TGG | - | chr1.3:15129698-15129717 | None:intergenic | 45.0% | |
| ATCATTGGCCGTGTAAACTC+CGG | - | chr1.3:15129982-15130001 | None:intergenic | 45.0% | |
| ATGGCTAGCATTGCTTCTGT+GGG | - | chr1.3:15129858-15129877 | None:intergenic | 45.0% | |
| CAAATGGCAATGAAGGGTCA+GGG | - | chr1.3:15128198-15128217 | None:intergenic | 45.0% | |
| CAACATATGCGATCAAACCG+AGG | - | chr1.3:15129006-15129025 | None:intergenic | 45.0% | |
| CAACTAAACTTGACCCCATG+TGG | - | chr1.3:15130164-15130183 | None:intergenic | 45.0% | |
| CACATGGGGTCAAGTTTAGT+TGG | + | chr1.3:15130162-15130181 | MS.gene054155:CDS | 45.0% | |
| CCATCATACATAAGGTGTGC+CGG | - | chr1.3:15129912-15129931 | None:intergenic | 45.0% | |
| CGAGCCACATTTGTATCACA+CGG | + | chr1.3:15129702-15129721 | MS.gene054155:CDS | 45.0% | |
| GCTCGTAAGATGAAACCACA+TGG | + | chr1.3:15130146-15130165 | MS.gene054155:CDS | 45.0% | |
| GGATTAGAAGGTTGCAAGAG+AGG | + | chr1.3:15130111-15130130 | MS.gene054155:CDS | 45.0% | |
| GTGTATACGAACCCCAAGTA+TGG | - | chr1.3:15129669-15129688 | None:intergenic | 45.0% | |
| TAAAGCCAGTGGAACAATGC+TGG | + | chr1.3:15128155-15128174 | MS.gene054155:CDS | 45.0% | |
| TAAGCTATTCGAGCACTTCG+CGG | + | chr1.3:15129941-15129960 | MS.gene054155:CDS | 45.0% | |
| TCAAATGGCAATGAAGGGTC+AGG | - | chr1.3:15128199-15128218 | None:intergenic | 45.0% | |
| ! | ACTTGAAGGATTAACGGGTG+AGG | + | chr1.3:15130049-15130068 | MS.gene054155:CDS | 45.0% |
| ! | CGAAGTGCTCGAATAGCTTA+GGG | - | chr1.3:15129941-15129960 | None:intergenic | 45.0% |
| ! | CTTGAAGGATTAACGGGTGA+GGG | + | chr1.3:15130050-15130069 | MS.gene054155:CDS | 45.0% |
| ! | GATTAACGGGTGAGGGAAAA+AGG | + | chr1.3:15130057-15130076 | MS.gene054155:CDS | 45.0% |
| ! | GCTAGCCATTGGTGATATGA+TGG | + | chr1.3:15129869-15129888 | MS.gene054155:CDS | 45.0% |
| ! | GTTCTCGTGACGCTTTTCAT+CGG | - | chr1.3:15129796-15129815 | None:intergenic | 45.0% |
| ! | TGTTGTGTTGGTGGGTGATA+TGG | + | chr1.3:15128282-15128301 | MS.gene054155:CDS | 45.0% |
| !! | GATGGTGTTGGTGATGAGAT+TGG | + | chr1.3:15128352-15128371 | MS.gene054155:CDS | 45.0% |
| !! | GTATGGGTTGTTTTCTGTCC+CGG | - | chr1.3:15129652-15129671 | None:intergenic | 45.0% |
| !! | TATGGGTTGTTTTCTGTCCC+GGG | - | chr1.3:15129651-15129670 | None:intergenic | 45.0% |
| !! | TGTTCCACTGGCTTTAGTAG+TGG | - | chr1.3:15128151-15128170 | None:intergenic | 45.0% |
| !! | TTGTGTGTGGATTAGCACCT+AGG | + | chr1.3:15130090-15130109 | MS.gene054155:CDS | 45.0% |
| CCGGCACACCTTATGTATGA+TGG | + | chr1.3:15129909-15129928 | MS.gene054155:CDS | 50.0% | |
| GGGTCAGGGAGAAAATTCTG+TGG | - | chr1.3:15128184-15128203 | None:intergenic | 50.0% | |
| GTATCTCATTGGAGCTGGCA+TGG | + | chr1.3:15128507-15128526 | MS.gene054155:CDS | 50.0% | |
| GTGCAGTATCTCATTGGAGC+TGG | + | chr1.3:15128502-15128521 | MS.gene054155:CDS | 50.0% | |
| TGGCTAGCATTGCTTCTGTG+GGG | - | chr1.3:15129857-15129876 | None:intergenic | 50.0% | |
| ! | CGTCGAGAAGCTTCTAGAAG+TGG | + | chr1.3:15129830-15129849 | MS.gene054155:CDS | 50.0% |
| ! | GCGAAGTGCTCGAATAGCTT+AGG | - | chr1.3:15129942-15129961 | None:intergenic | 50.0% |
| ! | GTTGGTGGGTGATATGGTGA+CGG | + | chr1.3:15128288-15128307 | MS.gene054155:CDS | 50.0% |
| !! | ACGCTTTTCATCGGCTGCAA+TGG | - | chr1.3:15129787-15129806 | None:intergenic | 50.0% |
| !! | ATGGGTTGTTTTCTGTCCCG+GGG | - | chr1.3:15129650-15129669 | None:intergenic | 50.0% |
| ACAGCGCACCGGAGTTTACA+CGG | + | chr1.3:15129971-15129990 | MS.gene054155:CDS | 55.0% | |
| ACGGCTCGCTTAGCGAAAGA+AGG | + | chr1.3:15129729-15129748 | MS.gene054155:CDS | 55.0% | |
| AGTCCAAGCCCGTGTCCAAA+CGG | - | chr1.3:15128398-15128417 | None:intergenic | 55.0% | |
| GCTCGCTTAGCGAAAGAAGG+CGG | + | chr1.3:15129732-15129751 | MS.gene054155:CDS | 55.0% | |
| GTTTGCATTGGACAGGACCC+CGG | + | chr1.3:15129630-15129649 | MS.gene054155:intron | 55.0% | |
| TTTGCATTGGACAGGACCCC+GGG | + | chr1.3:15129631-15129650 | MS.gene054155:intron | 55.0% | |
| ! | AGGGCGCAGGATTTTGTGTG+TGG | + | chr1.3:15130077-15130096 | MS.gene054155:CDS | 55.0% |
| CCACATATGCGCGCAAGCAC+TGG | - | chr1.3:15129762-15129781 | None:intergenic | 60.0% | |
| CCAGTGCTTGCGCGCATATG+TGG | + | chr1.3:15129759-15129778 | MS.gene054155:CDS | 60.0% | |
| GGCTGCCAGCATTGTTCCAC+TGG | - | chr1.3:15128163-15128182 | None:intergenic | 60.0% | |
| GGTCCTTCGTGATCGCACGA+AGG | + | chr1.3:15128240-15128259 | MS.gene054155:CDS | 60.0% | |
| GGTCCTTCGTGCGATCACGA+AGG | - | chr1.3:15128246-15128265 | None:intergenic | 60.0% | |
| TGGTTCCAGTCCAAGCCCCT+GGG | + | chr1.3:15128372-15128391 | MS.gene054155:CDS | 60.0% | |
| TTGGTTCCAGTCCAAGCCCC+TGG | + | chr1.3:15128371-15128390 | MS.gene054155:CDS | 60.0% | |
| AACTCCGGTGCGCTGTGCCA+CGG | - | chr1.3:15129967-15129986 | None:intergenic | 65.0% | |
| ATTCGAGCACTTCGCGGCCG+TGG | + | chr1.3:15129947-15129966 | MS.gene054155:CDS | 65.0% | |
| ! | GGGTGAGGGAAAAAGGGCGC+AGG | + | chr1.3:15130064-15130083 | MS.gene054155:CDS | 65.0% |
| AACGGCCCAGGGGCTTGGAC+TGG | - | chr1.3:15128380-15128399 | None:intergenic | 70.0% | |
| AGCCCGTGTCCAAACGGCCC+AGG | - | chr1.3:15128392-15128411 | None:intergenic | 70.0% | |
| CCCCTGGGCCGTTTGGACAC+GGG | + | chr1.3:15128387-15128406 | MS.gene054155:CDS | 70.0% | |
| CCCGTGTCCAAACGGCCCAG+GGG | - | chr1.3:15128390-15128409 | None:intergenic | 70.0% | |
| GCCCCTGGGCCGTTTGGACA+CGG | + | chr1.3:15128386-15128405 | MS.gene054155:CDS | 70.0% | |
| GCCCGTGTCCAAACGGCCCA+GGG | - | chr1.3:15128391-15128410 | None:intergenic | 70.0% | |
| GGGCCGTTTGGACACGGGCT+TGG | + | chr1.3:15128392-15128411 | MS.gene054155:CDS | 70.0% | |
| GTCCAAACGGCCCAGGGGCT+TGG | - | chr1.3:15128385-15128404 | None:intergenic | 70.0% | |
| GTCCAAGCCCCTGGGCCGTT+TGG | + | chr1.3:15128380-15128399 | MS.gene054155:CDS | 70.0% | |
| ! | GCGGCCGTGGCACAGCGCAC+CGG | + | chr1.3:15129960-15129979 | MS.gene054155:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 15128085 | 15130211 | 15128085 | ID=MS.gene054155 |
| chr1.3 | mRNA | 15128085 | 15130211 | 15128085 | ID=MS.gene054155.t1;Parent=MS.gene054155 |
| chr1.3 | exon | 15128085 | 15128528 | 15128085 | ID=MS.gene054155.t1.exon1;Parent=MS.gene054155.t1 |
| chr1.3 | CDS | 15128085 | 15128528 | 15128085 | ID=cds.MS.gene054155.t1;Parent=MS.gene054155.t1 |
| chr1.3 | exon | 15129645 | 15130211 | 15129645 | ID=MS.gene054155.t1.exon2;Parent=MS.gene054155.t1 |
| chr1.3 | CDS | 15129645 | 15130211 | 15129645 | ID=cds.MS.gene054155.t1;Parent=MS.gene054155.t1 |
| Gene Sequence |
| Protein sequence |
