Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31844.t1 | XP_013466413.1 | 99.1 | 330 | 3 | 0 | 7 | 336 | 61 | 390 | 4.70E-192 | 680.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31844.t1 | Q84VY3 | 80.6 | 335 | 64 | 1 | 1 | 334 | 55 | 389 | 5.7e-162 | 571.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31844.t1 | A0A072VEM1 | 99.1 | 330 | 3 | 0 | 7 | 336 | 61 | 390 | 3.4e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053108 | MS.gene31844 | 0.822509 | 2.28E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31844 | MS.gene008720 | PPI |
| MS.gene31844 | MS.gene47524 | PPI |
| MS.gene39580 | MS.gene31844 | PPI |
| MS.gene64881 | MS.gene31844 | PPI |
| MS.gene65325 | MS.gene31844 | PPI |
| MS.gene72651 | MS.gene31844 | PPI |
| MS.gene26574 | MS.gene31844 | PPI |
| MS.gene31844 | MS.gene86552 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31844.t1 | MTR_1g029150 | 99.107 | 336 | 3 | 0 | 1 | 336 | 55 | 390 | 0.0 | 696 |
| MS.gene31844.t1 | MTR_3g090100 | 75.595 | 336 | 79 | 1 | 1 | 336 | 34 | 366 | 0.0 | 543 |
| MS.gene31844.t1 | MTR_3g090010 | 75.150 | 334 | 80 | 1 | 1 | 334 | 38 | 368 | 0.0 | 530 |
| MS.gene31844.t1 | MTR_3g090020 | 74.107 | 336 | 84 | 1 | 1 | 336 | 34 | 366 | 0.0 | 528 |
| MS.gene31844.t1 | MTR_3g089025 | 72.917 | 336 | 88 | 1 | 1 | 336 | 37 | 369 | 0.0 | 524 |
| MS.gene31844.t1 | MTR_5g024130 | 71.726 | 336 | 91 | 2 | 1 | 336 | 62 | 393 | 0.0 | 519 |
| MS.gene31844.t1 | MTR_4g087440 | 71.726 | 336 | 91 | 2 | 1 | 336 | 62 | 393 | 0.0 | 518 |
| MS.gene31844.t1 | MTR_3g090110 | 47.863 | 117 | 38 | 1 | 178 | 294 | 2 | 95 | 1.96e-28 | 106 |
| MS.gene31844.t1 | MTR_3g089980 | 59.184 | 98 | 27 | 2 | 197 | 294 | 6 | 90 | 2.40e-27 | 103 |
| MS.gene31844.t1 | MTR_3g089973 | 43.357 | 143 | 37 | 2 | 178 | 320 | 2 | 100 | 2.22e-21 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31844.t1 | AT1G43800 | 80.597 | 335 | 64 | 1 | 1 | 334 | 55 | 389 | 0.0 | 578 |
| MS.gene31844.t1 | AT3G02630 | 71.257 | 334 | 93 | 2 | 1 | 334 | 64 | 394 | 0.0 | 513 |
| MS.gene31844.t1 | AT2G43710 | 70.536 | 336 | 95 | 2 | 1 | 336 | 70 | 401 | 0.0 | 507 |
| MS.gene31844.t1 | AT2G43710 | 70.536 | 336 | 95 | 2 | 1 | 336 | 70 | 401 | 0.0 | 507 |
| MS.gene31844.t1 | AT5G16240 | 68.862 | 334 | 101 | 2 | 1 | 334 | 62 | 392 | 3.47e-177 | 496 |
| MS.gene31844.t1 | AT5G16230 | 67.359 | 337 | 108 | 2 | 1 | 336 | 66 | 401 | 2.06e-172 | 484 |
| MS.gene31844.t1 | AT3G02610 | 68.843 | 337 | 99 | 4 | 4 | 336 | 77 | 411 | 2.63e-171 | 482 |
| MS.gene31844.t1 | AT3G02610 | 68.843 | 337 | 99 | 4 | 4 | 336 | 79 | 413 | 2.70e-171 | 482 |
| MS.gene31844.t1 | AT3G02620 | 67.656 | 337 | 103 | 4 | 4 | 336 | 69 | 403 | 1.79e-168 | 475 |
| MS.gene31844.t1 | AT3G02620 | 67.656 | 337 | 103 | 4 | 4 | 336 | 72 | 406 | 1.94e-168 | 475 |
| MS.gene31844.t1 | AT5G16230 | 66.871 | 326 | 106 | 2 | 12 | 336 | 1 | 325 | 4.41e-166 | 466 |
| MS.gene31844.t1 | AT3G02620 | 66.869 | 329 | 103 | 4 | 12 | 336 | 1 | 327 | 6.72e-163 | 457 |
Find 97 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACTTATTTGTATCTTTC+TGG | 0.182339 | 1.1:+14643448 | MS.gene31844:CDS |
| CAATGATTACGCTGATATTT+TGG | 0.196546 | 1.1:+14644851 | MS.gene31844:CDS |
| AAAACTGTTCAGTATCTTAT+TGG | 0.203529 | 1.1:+14643496 | MS.gene31844:CDS |
| GTGTATACAAATCCCAAGTA+TGG | 0.240289 | 1.1:-14644522 | None:intergenic |
| GATTAACGGGTGAGGGAAAA+AGG | 0.240677 | 1.1:+14644913 | MS.gene31844:CDS |
| TGTTGTGTTGGTTGGTGATA+TGG | 0.248245 | 1.1:+14643282 | MS.gene31844:CDS |
| GTCCAAGCCCGTGGGCCGTT+TGG | 0.332806 | 1.1:+14643380 | MS.gene31844:CDS |
| TCTTTCTGGAAGGGTTGATA+TGG | 0.335225 | 1.1:+14643462 | MS.gene31844:CDS |
| GTCCAAACGGCCCACGGGCT+TGG | 0.340343 | 1.1:-14643382 | None:intergenic |
| GGCTGCCAGCATTGTTCCAC+TGG | 0.386228 | 1.1:-14643160 | None:intergenic |
| GGGCCGTTTGGACACGGGCT+TGG | 0.396447 | 1.1:+14643392 | MS.gene31844:CDS |
| AACGGCCCACGGGCTTGGAC+TGG | 0.398332 | 1.1:-14643377 | None:intergenic |
| CACATGGGGTCAAGTTTAGT+TGG | 0.400607 | 1.1:+14645018 | MS.gene31844:CDS |
| TTTAATCGAACGGTGGAGAT+TGG | 0.401193 | 1.1:+14644878 | MS.gene31844:CDS |
| ATACAAATGTTGCTCGCTCT+TGG | 0.405320 | 1.1:-14644551 | None:intergenic |
| GACAGAAAACAACCCATACT+TGG | 0.410965 | 1.1:+14644509 | MS.gene31844:CDS |
| GGTTAGCACCTAGGATTAGA+AGG | 0.411387 | 1.1:+14644955 | MS.gene31844:CDS |
| ATTTGATGAATTTACTGATC+AGG | 0.419139 | 1.1:+14643213 | MS.gene31844:CDS |
| TCAAATGGCAATGAAGGATC+AGG | 0.420107 | 1.1:-14643196 | None:intergenic |
| GCGAAGTGCTCGAATAGCTT+AGG | 0.427800 | 1.1:-14644795 | None:intergenic |
| CAAAATATCAGCGTAATCAT+TGG | 0.433099 | 1.1:-14644850 | None:intergenic |
| GCCCGTGGGCCGTTTGGACA+CGG | 0.438549 | 1.1:+14643386 | MS.gene31844:CDS |
| GAAAAGCTTGAAGGATTAAC+GGG | 0.453295 | 1.1:+14644900 | MS.gene31844:CDS |
| TTTGCATTGGACAGGACCCC+GGG | 0.454311 | 1.1:+14644487 | MS.gene31844:intron |
| TGATCAGTAAATTCATCAAA+TGG | 0.459663 | 1.1:-14643211 | None:intergenic |
| ATAGACATGGGGATTTGCTT+AGG | 0.460553 | 1.1:+14643428 | MS.gene31844:CDS |
| GGAAAAGCTTGAAGGATTAA+CGG | 0.464892 | 1.1:+14644899 | MS.gene31844:CDS |
| CCACATATGCGCGCAAGCAC+TGG | 0.472837 | 1.1:-14644615 | None:intergenic |
| ATTCGAGCACTTCGCGGCCG+TGG | 0.474737 | 1.1:+14644803 | MS.gene31844:CDS |
| GTTCAGTATCTTATTGGAGC+TGG | 0.477043 | 1.1:+14643502 | MS.gene31844:CDS |
| AATTCATCAAATGGCAATGA+AGG | 0.478762 | 1.1:-14643202 | None:intergenic |
| CGAAGTGCTCGAATAGCTTA+GGG | 0.481594 | 1.1:-14644794 | None:intergenic |
| TTGTGTGTGGGTTAGCACCT+AGG | 0.482074 | 1.1:+14644946 | MS.gene31844:CDS |
| TCTTGCAACCTTCTAATCCT+AGG | 0.486803 | 1.1:-14644963 | None:intergenic |
| AATGGCTAGCATTGCTCCTG+TGG | 0.488560 | 1.1:-14644712 | None:intergenic |
| AACACAACAAAATACTCATC+AGG | 0.489365 | 1.1:-14643268 | None:intergenic |
| CCGGCACACCTTATGTATGA+TGG | 0.493314 | 1.1:+14644765 | MS.gene31844:CDS |
| GGTCTTGTCCATCATACATA+AGG | 0.494290 | 1.1:-14644773 | None:intergenic |
| TTATTTGTATCTTTCTGGAA+GGG | 0.495330 | 1.1:+14643453 | MS.gene31844:CDS |
| GCCCGTGTCCAAACGGCCCA+CGG | 0.499533 | 1.1:-14643388 | None:intergenic |
| GATGGTGTTGGTGATGAGGT+TGG | 0.504177 | 1.1:+14643352 | MS.gene31844:CDS |
| GCGGCCGTGGCACAGCGCAC+CGG | 0.504431 | 1.1:+14644816 | MS.gene31844:CDS |
| TGGAGATTGGAAAAGCTTGA+AGG | 0.504527 | 1.1:+14644891 | MS.gene31844:CDS |
| ATGGCTAGCATTGCTCCTGT+GGG | 0.506752 | 1.1:-14644711 | None:intergenic |
| CCCGTGGGCCGTTTGGACAC+GGG | 0.513039 | 1.1:+14643387 | MS.gene31844:CDS |
| CCAGTGCTTGCGCGCATATG+TGG | 0.513295 | 1.1:+14644615 | MS.gene31844:CDS |
| AACTCCGGTGCGCTGTGCCA+CGG | 0.520106 | 1.1:-14644820 | None:intergenic |
| TCTTGATGGTGTTGGTGATG+AGG | 0.523044 | 1.1:+14643348 | MS.gene31844:CDS |
| AGTCCAAGCCCGTGTCCAAA+CGG | 0.523809 | 1.1:-14643395 | None:intergenic |
| TAAAGCCAGTGGAACAATGC+TGG | 0.530542 | 1.1:+14643155 | MS.gene31844:CDS |
| TTTCTCCATCATATCACCAA+TGG | 0.532359 | 1.1:-14644730 | None:intergenic |
| GTATCTTATTGGAGCTGGCA+TGG | 0.533582 | 1.1:+14643507 | MS.gene31844:CDS |
| TTGGTTCCAGTCCAAGCCCG+TGG | 0.534499 | 1.1:+14643371 | MS.gene31844:CDS |
| TAAGCTATTCGAGCACTTCG+CGG | 0.535770 | 1.1:+14644797 | MS.gene31844:CDS |
| GTTTGCATTGGACAGGACCC+CGG | 0.538725 | 1.1:+14644486 | MS.gene31844:intron |
| GGATTAGAAGGTTGCAAGAG+AGG | 0.539517 | 1.1:+14644967 | MS.gene31844:CDS |
| AGTATGATCAATGGTCTTGA+TGG | 0.539669 | 1.1:+14643334 | MS.gene31844:CDS |
| GCTAGCCATTGGTGATATGA+TGG | 0.539965 | 1.1:+14644725 | MS.gene31844:CDS |
| CTTATTTGTATCTTTCTGGA+AGG | 0.544191 | 1.1:+14643452 | MS.gene31844:CDS |
| CCATCATACATAAGGTGTGC+CGG | 0.547215 | 1.1:-14644765 | None:intergenic |
| TTTCAAATCACTAGAAAACT+GGG | 0.554024 | 1.1:+14643108 | MS.gene31844:CDS |
| CGTCGAGAAGCTTCTAGAAG+TGG | 0.554197 | 1.1:+14644686 | MS.gene31844:CDS |
| CCCGTGTCCAAACGGCCCAC+GGG | 0.555548 | 1.1:-14643387 | None:intergenic |
| TGTTCCACTGGCTTTAGTAG+TGG | 0.556461 | 1.1:-14643148 | None:intergenic |
| ACGGCTCGCTTAGCGAAAGA+AGG | 0.562132 | 1.1:+14644585 | MS.gene31844:CDS |
| ACAGGAGCAATGCTAGCCAT+TGG | 0.563098 | 1.1:+14644714 | MS.gene31844:CDS |
| CTTGAAGGATTAACGGGTGA+GGG | 0.586052 | 1.1:+14644906 | MS.gene31844:CDS |
| TGTATACAAATCCCAAGTAT+GGG | 0.587703 | 1.1:-14644521 | None:intergenic |
| ACGTATCAGAGTATGATCAA+TGG | 0.591704 | 1.1:+14643325 | MS.gene31844:CDS |
| ACAGCGCACCGGAGTTTACA+CGG | 0.592150 | 1.1:+14644827 | MS.gene31844:CDS |
| ATCATTGGCCGTGTAAACTC+CGG | 0.595715 | 1.1:-14644835 | None:intergenic |
| GATTAGAAGGTTGCAAGAGA+GGG | 0.596681 | 1.1:+14644968 | MS.gene31844:CDS |
| ACAGAAAACAACCCATACTT+GGG | 0.596760 | 1.1:+14644510 | MS.gene31844:CDS |
| CTTCTAGAAGTGGACCCCAC+AGG | 0.596989 | 1.1:+14644696 | MS.gene31844:CDS |
| ATCAATGGTCTTGATGGTGT+TGG | 0.597547 | 1.1:+14643340 | MS.gene31844:CDS |
| CAACTAAACTTGACCCCATG+TGG | 0.598754 | 1.1:-14645017 | None:intergenic |
| TGAATTTACTGATCAGGTGA+AGG | 0.600944 | 1.1:+14643219 | MS.gene31844:CDS |
| GTTGGTTGGTGATATGGTGA+CGG | 0.602166 | 1.1:+14643288 | MS.gene31844:CDS |
| GCTTGAAGGATTAACGGGTG+AGG | 0.603070 | 1.1:+14644905 | MS.gene31844:CDS |
| TGGTTCCAGTCCAAGCCCGT+GGG | 0.608947 | 1.1:+14643372 | MS.gene31844:CDS |
| CGAGCAACATTTGTATCACA+CGG | 0.621285 | 1.1:+14644558 | MS.gene31844:CDS |
| ATTTGTATCACACGGAAACA+CGG | 0.623224 | 1.1:+14644566 | MS.gene31844:CDS |
| TTGATCATACTCTGATACGT+CGG | 0.624523 | 1.1:-14643322 | None:intergenic |
| CAAATGGCAATGAAGGATCA+GGG | 0.626451 | 1.1:-14643195 | None:intergenic |
| CAACAAAATACTCATCAGGA+AGG | 0.632422 | 1.1:-14643264 | None:intergenic |
| TGGCTAGCATTGCTCCTGTG+GGG | 0.636911 | 1.1:-14644710 | None:intergenic |
| CTCGTAAGATGAAACCACAT+GGG | 0.643536 | 1.1:+14645003 | MS.gene31844:CDS |
| CTGCTGAAGAAAATAGACAT+GGG | 0.645814 | 1.1:+14643416 | MS.gene31844:CDS |
| GCTCGTAAGATGAAACCACA+TGG | 0.658763 | 1.1:+14645002 | MS.gene31844:CDS |
| TGCTGAAGAAAATAGACATG+GGG | 0.668352 | 1.1:+14643417 | MS.gene31844:CDS |
| ACTGCTGAAGAAAATAGACA+TGG | 0.671679 | 1.1:+14643415 | MS.gene31844:CDS |
| TTTACCACTACTAAAGCCAG+TGG | 0.671826 | 1.1:+14643144 | MS.gene31844:CDS |
| GCTCGCTTAGCGAAAGAAGG+CGG | 0.694123 | 1.1:+14644588 | MS.gene31844:CDS |
| GGTCCTTCGTGCGATCACGA+AGG | 0.703598 | 1.1:-14643243 | None:intergenic |
| GGATCAGGGAGAAAATTCTG+TGG | 0.710660 | 1.1:-14643181 | None:intergenic |
| GGTCCTTCGTGATCGCACGA+AGG | 0.710721 | 1.1:+14643240 | MS.gene31844:CDS |
| TCGTAAGATGAAACCACATG+GGG | 0.759922 | 1.1:+14645004 | MS.gene31844:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAATAATTAGATAAAT+TGG | + | chr1.1:14643612-14643631 | MS.gene31844:intron | 10.0% |
| !! | CATATTATTAATTAAAGTGA+TGG | + | chr1.1:14643649-14643668 | MS.gene31844:intron | 15.0% |
| !!! | TTTTTTACTTTCTAACTAAA+TGG | + | chr1.1:14644424-14644443 | MS.gene31844:intron | 15.0% |
| !! | ATATGATCTATACTAGTTAA+TGG | - | chr1.1:14643889-14643908 | None:intergenic | 20.0% |
| !! | TTCAAAAAAAAAAAAAACCG+AGG | - | chr1.1:14644027-14644046 | None:intergenic | 20.0% |
| !! | TTGAAAAAATATAGAATCCT+CGG | + | chr1.1:14644042-14644061 | MS.gene31844:intron | 20.0% |
| !!! | AATTGATTTTTCATGTGTTA+CGG | + | chr1.1:14644386-14644405 | MS.gene31844:intron | 20.0% |
| !!! | TAGTTGGATTTTTAATAATG+AGG | + | chr1.1:14645034-14645053 | MS.gene31844:CDS | 20.0% |
| !!! | TGCTCTGTTTTTTTTTTTTT+TGG | + | chr1.1:14644098-14644117 | MS.gene31844:intron | 20.0% |
| ! | AAAACTGTTCAGTATCTTAT+TGG | + | chr1.1:14643496-14643515 | MS.gene31844:CDS | 25.0% |
| ! | ACTACTTAGAAGAAAAGTTT+CGG | - | chr1.1:14644306-14644325 | None:intergenic | 25.0% |
| ! | ATCTATCTAAATAGAATCCT+CGG | + | chr1.1:14644007-14644026 | MS.gene31844:intron | 25.0% |
| ! | ATTTGATGAATTTACTGATC+AGG | + | chr1.1:14643213-14643232 | MS.gene31844:CDS | 25.0% |
| ! | CAAAACAGAACATTATGTTT+CGG | - | chr1.1:14644125-14644144 | None:intergenic | 25.0% |
| ! | TCATGTAACATAAAAGTGAT+GGG | - | chr1.1:14644194-14644213 | None:intergenic | 25.0% |
| ! | TGATCAGTAAATTCATCAAA+TGG | - | chr1.1:14643214-14643233 | None:intergenic | 25.0% |
| ! | TTCATGTAACATAAAAGTGA+TGG | - | chr1.1:14644195-14644214 | None:intergenic | 25.0% |
| ! | TTTCAAATCACTAGAAAACT+GGG | + | chr1.1:14643108-14643127 | MS.gene31844:CDS | 25.0% |
| !! | ACTTTTATGTTACATGAATG+AGG | + | chr1.1:14644197-14644216 | MS.gene31844:intron | 25.0% |
| !! | GTAGACATTATTTTCAACTT+AGG | - | chr1.1:14644456-14644475 | None:intergenic | 25.0% |
| !! | TGTACATTTTATTGCAATCT+AGG | + | chr1.1:14643583-14643602 | MS.gene31844:intron | 25.0% |
| !! | TTATTTGTATCTTTCTGGAA+GGG | + | chr1.1:14643453-14643472 | MS.gene31844:CDS | 25.0% |
| !! | TTTTCAAATCACTAGAAAAC+TGG | + | chr1.1:14643107-14643126 | MS.gene31844:CDS | 25.0% |
| !!! | AATTGATTTTTCACATGTGT+GGG | + | chr1.1:14644350-14644369 | MS.gene31844:intron | 25.0% |
| !!! | TAATTGATTTTTCACATGTG+TGG | + | chr1.1:14644349-14644368 | MS.gene31844:intron | 25.0% |
| !!! | TTGAAAATTTCTAGCTTTTC+TGG | - | chr1.1:14643094-14643113 | None:intergenic | 25.0% |
| !!! | TTTTGGAGTTTTTAATCGAA+CGG | + | chr1.1:14644868-14644887 | MS.gene31844:CDS | 25.0% |
| AACACAACAAAATACTCATC+AGG | - | chr1.1:14643271-14643290 | None:intergenic | 30.0% | |
| AATTCATCAAATGGCAATGA+AGG | - | chr1.1:14643205-14643224 | None:intergenic | 30.0% | |
| AGGACTTATTTGTATCTTTC+TGG | + | chr1.1:14643448-14643467 | MS.gene31844:CDS | 30.0% | |
| ATGTAACATAAAAGTGATGG+GGG | - | chr1.1:14644192-14644211 | None:intergenic | 30.0% | |
| CAAAATATCAGCGTAATCAT+TGG | - | chr1.1:14644853-14644872 | None:intergenic | 30.0% | |
| CATGTAACATAAAAGTGATG+GGG | - | chr1.1:14644193-14644212 | None:intergenic | 30.0% | |
| CTTATTTGTATCTTTCTGGA+AGG | + | chr1.1:14643452-14643471 | MS.gene31844:CDS | 30.0% | |
| TGTATACAAATCCCAAGTAT+GGG | - | chr1.1:14644524-14644543 | None:intergenic | 30.0% | |
| ! | CAATGATTACGCTGATATTT+TGG | + | chr1.1:14644851-14644870 | MS.gene31844:CDS | 30.0% |
| ! | GCAACATTGTAATTTGTAAG+AGG | - | chr1.1:14643863-14643882 | None:intergenic | 30.0% |
| !! | ACATTGCATTTTGTTTGCAT+TGG | + | chr1.1:14644474-14644493 | MS.gene31844:intron | 30.0% |
| !! | TGATGAGTATTTTGTTGTGT+TGG | + | chr1.1:14643270-14643289 | MS.gene31844:CDS | 30.0% |
| !! | TTAAAGTGATGGATAGTAGT+AGG | + | chr1.1:14643660-14643679 | MS.gene31844:intron | 30.0% |
| !!! | AAAATTTCTAGCTTTTCTGG+TGG | - | chr1.1:14643091-14643110 | None:intergenic | 30.0% |
| ACAGAAAACAACCCATACTT+GGG | + | chr1.1:14644510-14644529 | MS.gene31844:CDS | 35.0% | |
| ACGTATCAGAGTATGATCAA+TGG | + | chr1.1:14643325-14643344 | MS.gene31844:CDS | 35.0% | |
| ACTGCTGAAGAAAATAGACA+TGG | + | chr1.1:14643415-14643434 | MS.gene31844:CDS | 35.0% | |
| ATTTGTATCACACGGAAACA+CGG | + | chr1.1:14644566-14644585 | MS.gene31844:CDS | 35.0% | |
| CAACAAAATACTCATCAGGA+AGG | - | chr1.1:14643267-14643286 | None:intergenic | 35.0% | |
| CTGCTGAAGAAAATAGACAT+GGG | + | chr1.1:14643416-14643435 | MS.gene31844:CDS | 35.0% | |
| GAAAAGCTTGAAGGATTAAC+GGG | + | chr1.1:14644900-14644919 | MS.gene31844:CDS | 35.0% | |
| GGAAAAGCTTGAAGGATTAA+CGG | + | chr1.1:14644899-14644918 | MS.gene31844:CDS | 35.0% | |
| GGAGAAAAAAATCACAATGC+CGG | + | chr1.1:14644746-14644765 | MS.gene31844:CDS | 35.0% | |
| GTGTATACAAATCCCAAGTA+TGG | - | chr1.1:14644525-14644544 | None:intergenic | 35.0% | |
| TGAATTTACTGATCAGGTGA+AGG | + | chr1.1:14643219-14643238 | MS.gene31844:CDS | 35.0% | |
| TGCTGAAGAAAATAGACATG+GGG | + | chr1.1:14643417-14643436 | MS.gene31844:CDS | 35.0% | |
| TTGATCATACTCTGATACGT+CGG | - | chr1.1:14643325-14643344 | None:intergenic | 35.0% | |
| TTTCTCCATCATATCACCAA+TGG | - | chr1.1:14644733-14644752 | None:intergenic | 35.0% | |
| ! | AGTATGATCAATGGTCTTGA+TGG | + | chr1.1:14643334-14643353 | MS.gene31844:CDS | 35.0% |
| !! | GAGTATTTTGTTGTGTTGGT+TGG | + | chr1.1:14643274-14643293 | MS.gene31844:CDS | 35.0% |
| ATACAAATGTTGCTCGCTCT+TGG | - | chr1.1:14644554-14644573 | None:intergenic | 40.0% | |
| CAAATGGCAATGAAGGATCA+GGG | - | chr1.1:14643198-14643217 | None:intergenic | 40.0% | |
| CGAGCAACATTTGTATCACA+CGG | + | chr1.1:14644558-14644577 | MS.gene31844:CDS | 40.0% | |
| CTCGTAAGATGAAACCACAT+GGG | + | chr1.1:14645003-14645022 | MS.gene31844:CDS | 40.0% | |
| GACAGAAAACAACCCATACT+TGG | + | chr1.1:14644509-14644528 | MS.gene31844:CDS | 40.0% | |
| GATTAGAAGGTTGCAAGAGA+GGG | + | chr1.1:14644968-14644987 | MS.gene31844:CDS | 40.0% | |
| GTTCAGTATCTTATTGGAGC+TGG | + | chr1.1:14643502-14643521 | MS.gene31844:CDS | 40.0% | |
| TCAAATGGCAATGAAGGATC+AGG | - | chr1.1:14643199-14643218 | None:intergenic | 40.0% | |
| TCGTAAGATGAAACCACATG+GGG | + | chr1.1:14645004-14645023 | MS.gene31844:CDS | 40.0% | |
| TCTTGCAACCTTCTAATCCT+AGG | - | chr1.1:14644966-14644985 | None:intergenic | 40.0% | |
| TGGAGATTGGAAAAGCTTGA+AGG | + | chr1.1:14644891-14644910 | MS.gene31844:CDS | 40.0% | |
| TTTAATCGAACGGTGGAGAT+TGG | + | chr1.1:14644878-14644897 | MS.gene31844:CDS | 40.0% | |
| TTTACCACTACTAAAGCCAG+TGG | + | chr1.1:14643144-14643163 | MS.gene31844:CDS | 40.0% | |
| ! | ATAGACATGGGGATTTGCTT+AGG | + | chr1.1:14643428-14643447 | MS.gene31844:CDS | 40.0% |
| ! | ATTAACGGGTGAGGGAAAAA+GGG | + | chr1.1:14644914-14644933 | MS.gene31844:CDS | 40.0% |
| ! | GGTCTTGTCCATCATACATA+AGG | - | chr1.1:14644776-14644795 | None:intergenic | 40.0% |
| ! | GTTCTCATGACGCTTTTCAT+CGG | - | chr1.1:14644652-14644671 | None:intergenic | 40.0% |
| ! | TGGAGTTTTTAATCGAACGG+TGG | + | chr1.1:14644871-14644890 | MS.gene31844:CDS | 40.0% |
| !! | ATCAATGGTCTTGATGGTGT+TGG | + | chr1.1:14643340-14643359 | MS.gene31844:CDS | 40.0% |
| !! | GCATTTTGTTTGCATTGGAC+AGG | + | chr1.1:14644479-14644498 | MS.gene31844:intron | 40.0% |
| !! | GGATAGTAGTAGGAGTGTTT+AGG | + | chr1.1:14643670-14643689 | MS.gene31844:intron | 40.0% |
| !! | TAGTAGTAGGAGTGTTTAGG+TGG | + | chr1.1:14643673-14643692 | MS.gene31844:intron | 40.0% |
| !! | TCTTTCTGGAAGGGTTGATA+TGG | + | chr1.1:14643462-14643481 | MS.gene31844:CDS | 40.0% |
| !! | TGTTGTGTTGGTTGGTGATA+TGG | + | chr1.1:14643282-14643301 | MS.gene31844:CDS | 40.0% |
| ATCATTGGCCGTGTAAACTC+CGG | - | chr1.1:14644838-14644857 | None:intergenic | 45.0% | |
| CAACATATGCGATCAAACCG+AGG | - | chr1.1:14644062-14644081 | None:intergenic | 45.0% | |
| CAACTAAACTTGACCCCATG+TGG | - | chr1.1:14645020-14645039 | None:intergenic | 45.0% | |
| CACATGGGGTCAAGTTTAGT+TGG | + | chr1.1:14645018-14645037 | MS.gene31844:CDS | 45.0% | |
| CCATCATACATAAGGTGTGC+CGG | - | chr1.1:14644768-14644787 | None:intergenic | 45.0% | |
| GCTCGTAAGATGAAACCACA+TGG | + | chr1.1:14645002-14645021 | MS.gene31844:CDS | 45.0% | |
| GGATCAGGGAGAAAATTCTG+TGG | - | chr1.1:14643184-14643203 | None:intergenic | 45.0% | |
| GGATTAGAAGGTTGCAAGAG+AGG | + | chr1.1:14644967-14644986 | MS.gene31844:CDS | 45.0% | |
| GGTTAGCACCTAGGATTAGA+AGG | + | chr1.1:14644955-14644974 | MS.gene31844:CDS | 45.0% | |
| GTATCTTATTGGAGCTGGCA+TGG | + | chr1.1:14643507-14643526 | MS.gene31844:CDS | 45.0% | |
| TAAAGCCAGTGGAACAATGC+TGG | + | chr1.1:14643155-14643174 | MS.gene31844:CDS | 45.0% | |
| TAAGCTATTCGAGCACTTCG+CGG | + | chr1.1:14644797-14644816 | MS.gene31844:CDS | 45.0% | |
| ! | CGAAGTGCTCGAATAGCTTA+GGG | - | chr1.1:14644797-14644816 | None:intergenic | 45.0% |
| ! | CTTGAAGGATTAACGGGTGA+GGG | + | chr1.1:14644906-14644925 | MS.gene31844:CDS | 45.0% |
| ! | GATTAACGGGTGAGGGAAAA+AGG | + | chr1.1:14644913-14644932 | MS.gene31844:CDS | 45.0% |
| ! | GCTAGCCATTGGTGATATGA+TGG | + | chr1.1:14644725-14644744 | MS.gene31844:CDS | 45.0% |
| !! | GTATGGGTTGTTTTCTGTCC+CGG | - | chr1.1:14644508-14644527 | None:intergenic | 45.0% |
| !! | GTTGGTTGGTGATATGGTGA+CGG | + | chr1.1:14643288-14643307 | MS.gene31844:CDS | 45.0% |
| !! | TATGGGTTGTTTTCTGTCCC+GGG | - | chr1.1:14644507-14644526 | None:intergenic | 45.0% |
| !! | TCTTGATGGTGTTGGTGATG+AGG | + | chr1.1:14643348-14643367 | MS.gene31844:CDS | 45.0% |
| !! | TGTTCCACTGGCTTTAGTAG+TGG | - | chr1.1:14643151-14643170 | None:intergenic | 45.0% |
| !!! | AAGATTTATTTTTTTTTTTT+AGG | - | chr1.1:14643937-14643956 | None:intergenic | 5.0% |
| !!! | AGATTTATTTTTTTTTTTTA+GGG | - | chr1.1:14643936-14643955 | None:intergenic | 5.0% |
| !!! | TTTAATTTCATTTAATATTT+TGG | + | chr1.1:14643549-14643568 | MS.gene31844:intron | 5.0% |
| AATGGCTAGCATTGCTCCTG+TGG | - | chr1.1:14644715-14644734 | None:intergenic | 50.0% | |
| ACAGGAGCAATGCTAGCCAT+TGG | + | chr1.1:14644714-14644733 | MS.gene31844:CDS | 50.0% | |
| ATGGCTAGCATTGCTCCTGT+GGG | - | chr1.1:14644714-14644733 | None:intergenic | 50.0% | |
| CCGGCACACCTTATGTATGA+TGG | + | chr1.1:14644765-14644784 | MS.gene31844:CDS | 50.0% | |
| ! | CGTCGAGAAGCTTCTAGAAG+TGG | + | chr1.1:14644686-14644705 | MS.gene31844:CDS | 50.0% |
| ! | GCGAAGTGCTCGAATAGCTT+AGG | - | chr1.1:14644798-14644817 | None:intergenic | 50.0% |
| ! | GCTTGAAGGATTAACGGGTG+AGG | + | chr1.1:14644905-14644924 | MS.gene31844:CDS | 50.0% |
| !! | ATGGGTTGTTTTCTGTCCCG+GGG | - | chr1.1:14644506-14644525 | None:intergenic | 50.0% |
| !! | GATGGTGTTGGTGATGAGGT+TGG | + | chr1.1:14643352-14643371 | MS.gene31844:CDS | 50.0% |
| !! | TTGTGTGTGGGTTAGCACCT+AGG | + | chr1.1:14644946-14644965 | MS.gene31844:CDS | 50.0% |
| ACAGCGCACCGGAGTTTACA+CGG | + | chr1.1:14644827-14644846 | MS.gene31844:CDS | 55.0% | |
| ACGGCTCGCTTAGCGAAAGA+AGG | + | chr1.1:14644585-14644604 | MS.gene31844:CDS | 55.0% | |
| AGTCCAAGCCCGTGTCCAAA+CGG | - | chr1.1:14643398-14643417 | None:intergenic | 55.0% | |
| GCTCGCTTAGCGAAAGAAGG+CGG | + | chr1.1:14644588-14644607 | MS.gene31844:CDS | 55.0% | |
| GTTTGCATTGGACAGGACCC+CGG | + | chr1.1:14644486-14644505 | MS.gene31844:intron | 55.0% | |
| TGGCTAGCATTGCTCCTGTG+GGG | - | chr1.1:14644713-14644732 | None:intergenic | 55.0% | |
| TTTGCATTGGACAGGACCCC+GGG | + | chr1.1:14644487-14644506 | MS.gene31844:intron | 55.0% | |
| ! | AGGGCGCAGGATTTTGTGTG+TGG | + | chr1.1:14644933-14644952 | MS.gene31844:CDS | 55.0% |
| ! | CTTCTAGAAGTGGACCCCAC+AGG | + | chr1.1:14644696-14644715 | MS.gene31844:CDS | 55.0% |
| ! | GGGCGCAGGATTTTGTGTGT+GGG | + | chr1.1:14644934-14644953 | MS.gene31844:CDS | 55.0% |
| !! | ACGCTTTTCATCGGCTGCGA+TGG | - | chr1.1:14644643-14644662 | None:intergenic | 55.0% |
| CCACATATGCGCGCAAGCAC+TGG | - | chr1.1:14644618-14644637 | None:intergenic | 60.0% | |
| CCAGTGCTTGCGCGCATATG+TGG | + | chr1.1:14644615-14644634 | MS.gene31844:CDS | 60.0% | |
| GGCTGCCAGCATTGTTCCAC+TGG | - | chr1.1:14643163-14643182 | None:intergenic | 60.0% | |
| GGTCCTTCGTGATCGCACGA+AGG | + | chr1.1:14643240-14643259 | MS.gene31844:CDS | 60.0% | |
| GGTCCTTCGTGCGATCACGA+AGG | - | chr1.1:14643246-14643265 | None:intergenic | 60.0% | |
| TGGTTCCAGTCCAAGCCCGT+GGG | + | chr1.1:14643372-14643391 | MS.gene31844:CDS | 60.0% | |
| TTGGTTCCAGTCCAAGCCCG+TGG | + | chr1.1:14643371-14643390 | MS.gene31844:CDS | 60.0% | |
| AACTCCGGTGCGCTGTGCCA+CGG | - | chr1.1:14644823-14644842 | None:intergenic | 65.0% | |
| ATTCGAGCACTTCGCGGCCG+TGG | + | chr1.1:14644803-14644822 | MS.gene31844:CDS | 65.0% | |
| ! | GGGTGAGGGAAAAAGGGCGC+AGG | + | chr1.1:14644920-14644939 | MS.gene31844:CDS | 65.0% |
| AACGGCCCACGGGCTTGGAC+TGG | - | chr1.1:14643380-14643399 | None:intergenic | 70.0% | |
| CCCGTGGGCCGTTTGGACAC+GGG | + | chr1.1:14643387-14643406 | MS.gene31844:CDS | 70.0% | |
| CCCGTGTCCAAACGGCCCAC+GGG | - | chr1.1:14643390-14643409 | None:intergenic | 70.0% | |
| GCCCGTGGGCCGTTTGGACA+CGG | + | chr1.1:14643386-14643405 | MS.gene31844:CDS | 70.0% | |
| GCCCGTGTCCAAACGGCCCA+CGG | - | chr1.1:14643391-14643410 | None:intergenic | 70.0% | |
| GGGCCGTTTGGACACGGGCT+TGG | + | chr1.1:14643392-14643411 | MS.gene31844:CDS | 70.0% | |
| GTCCAAACGGCCCACGGGCT+TGG | - | chr1.1:14643385-14643404 | None:intergenic | 70.0% | |
| GTCCAAGCCCGTGGGCCGTT+TGG | + | chr1.1:14643380-14643399 | MS.gene31844:CDS | 70.0% | |
| ! | GCGGCCGTGGCACAGCGCAC+CGG | + | chr1.1:14644816-14644835 | MS.gene31844:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14643085 | 14645067 | 14643085 | ID=MS.gene31844 |
| chr1.1 | mRNA | 14643085 | 14645067 | 14643085 | ID=MS.gene31844.t1;Parent=MS.gene31844 |
| chr1.1 | exon | 14643085 | 14643528 | 14643085 | ID=MS.gene31844.t1.exon1;Parent=MS.gene31844.t1 |
| chr1.1 | CDS | 14643085 | 14643528 | 14643085 | ID=cds.MS.gene31844.t1;Parent=MS.gene31844.t1 |
| chr1.1 | exon | 14644501 | 14645067 | 14644501 | ID=MS.gene31844.t1.exon2;Parent=MS.gene31844.t1 |
| chr1.1 | CDS | 14644501 | 14645067 | 14644501 | ID=cds.MS.gene31844.t1;Parent=MS.gene31844.t1 |
| Gene Sequence |
| Protein sequence |
