AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65165

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65165.t1 MTR_7g060020 71.922 463 100 4 1 462 1 434 0.0 670
MS.gene65165.t1 MTR_7g060310 69.880 498 105 4 1 460 2 492 0.0 665
MS.gene65165.t1 MTR_7g060115 69.017 468 125 8 1 462 1 454 0.0 630
MS.gene65165.t1 MTR_7g060320 70.084 478 113 8 1 459 2 468 0.0 627
MS.gene65165.t1 MTR_7g446270 63.734 466 132 4 1 437 1 458 0.0 570
MS.gene65165.t1 MTR_7g059510 63.793 464 120 4 1 459 1 421 0.0 569
MS.gene65165.t1 MTR_7g060840 63.270 471 128 6 1 460 1 437 0.0 561
MS.gene65165.t1 MTR_7g060260 63.034 468 128 5 1 460 1 431 0.0 546
MS.gene65165.t1 MTR_7g059540 59.959 492 151 9 1 459 1 479 0.0 541
MS.gene65165.t1 MTR_7g060160 61.771 463 119 7 1 462 1 406 0.0 539
MS.gene65165.t1 MTR_7g059540 60.166 482 156 8 1 459 2 470 0.0 536
MS.gene65165.t1 MTR_7g060370 58.642 486 160 8 1 458 1 473 0.0 520
MS.gene65165.t1 MTR_7g060220 60.297 471 145 12 1 460 2 441 1.43e-172 492
MS.gene65165.t1 MTR_7g059810 58.811 471 160 9 1 460 2 449 1.17e-170 487
MS.gene65165.t1 MTR_7g060330 52.930 512 168 7 1 460 2 492 3.87e-168 483
MS.gene65165.t1 MTR_0182s0060 50.187 536 175 9 1 460 2 521 3.76e-165 476
MS.gene65165.t1 MTR_7g059475 73.361 244 58 2 74 310 1 244 8.65e-120 350
MS.gene65165.t1 MTR_7g059515 76.316 190 38 3 1 190 1 183 1.71e-95 287
MS.gene65165.t1 MTR_7g059520 70.621 177 52 0 284 460 1 177 1.66e-86 263
MS.gene65165.t1 MTR_7g059525 52.536 276 96 3 220 460 13 288 3.60e-85 263
MS.gene65165.t1 MTR_7g060060 63.761 218 71 4 53 265 1 215 6.76e-85 260
MS.gene65165.t1 MTR_8g042170 35.924 476 218 12 29 457 24 459 3.31e-84 266
MS.gene65165.t1 MTR_7g060080 68.649 185 50 1 284 460 12 196 4.73e-84 257
MS.gene65165.t1 MTR_7g059480 68.812 202 58 3 1 201 1 198 6.94e-84 274
MS.gene65165.t1 MTR_7g059480 51.504 266 81 2 243 460 513 778 1.29e-76 254
MS.gene65165.t1 MTR_8g037923 35.830 494 255 13 3 457 2 472 1.38e-83 265
MS.gene65165.t1 MTR_8g037920 35.347 447 206 14 52 457 7 411 6.42e-67 220
MS.gene65165.t1 MTR_8g042400 36.772 378 176 11 111 457 1 346 1.91e-63 209
MS.gene65165.t1 MTR_7g060200 71.963 107 28 1 74 180 1 105 1.68e-45 157
MS.gene65165.t1 MTR_1g048070 53.005 183 60 6 1 182 1 158 3.48e-45 158
MS.gene65165.t1 MTR_8g042070 34.082 267 130 7 236 458 2 266 7.88e-36 134
MS.gene65165.t1 MTR_8g042080 42.945 163 76 4 21 175 16 169 9.08e-34 125
MS.gene65165.t1 MTR_5g086340 27.816 435 236 14 48 455 49 432 1.76e-27 114
MS.gene65165.t1 MTR_5g016570 25.446 448 289 14 31 456 103 527 3.13e-25 108
MS.gene65165.t1 MTR_7g060105 94.118 51 3 0 362 412 1 51 2.54e-24 99.8
MS.gene65165.t1 MTR_2g041180 25.105 474 284 18 3 455 25 448 1.06e-22 100
MS.gene65165.t1 MTR_0209s0060 25.057 439 251 14 9 421 12 398 5.04e-22 98.6
MS.gene65165.t1 MTR_0209s0030 25.057 439 251 14 9 421 12 398 5.04e-22 98.6
MS.gene65165.t1 MTR_5g086260 34.783 184 107 3 288 462 136 315 5.79e-22 96.7
MS.gene65165.t1 MTR_2g036320 24.891 458 273 19 25 461 63 470 9.07e-22 98.2
MS.gene65165.t1 MTR_8g005325 23.956 455 269 11 9 436 39 443 3.44e-20 93.2
MS.gene65165.t1 MTR_8g005235 23.517 472 290 17 9 456 10 434 3.48e-20 93.2
MS.gene65165.t1 MTR_8g006525 25.754 431 233 15 24 420 17 394 1.48e-19 91.3
MS.gene65165.t1 MTR_8g005225 24.598 435 255 15 31 436 39 429 2.56e-19 90.5
MS.gene65165.t1 MTR_8g042090 53.521 71 33 0 332 402 2 72 7.05e-19 82.4
MS.gene65165.t1 MTR_8g005295 23.493 481 298 16 31 458 38 501 5.15e-18 87.0
MS.gene65165.t1 MTR_6g010920 23.465 456 274 18 13 452 9 405 6.73e-18 85.9
MS.gene65165.t1 MTR_8g042830 25.199 377 218 11 116 455 64 413 8.34e-18 85.9
MS.gene65165.t1 MTR_5g087580 32.961 179 102 6 288 455 43 214 1.84e-17 81.6
MS.gene65165.t1 MTR_6g011050 23.377 385 239 12 24 406 19 349 1.16e-16 82.0
MS.gene65165.t1 MTR_8g005265 23.340 467 270 16 31 452 29 452 8.54e-16 79.7
MS.gene65165.t1 MTR_2g036310 30.380 158 97 6 310 455 2 158 3.95e-14 70.5
MS.gene65165.t1 MTR_8g005285 24.390 287 171 8 163 421 184 452 2.28e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65165.t1 AT3G50120 26.932 453 271 15 31 456 105 524 1.20e-33 133
MS.gene65165.t1 AT3G50180 26.652 454 253 15 31 456 180 581 1.15e-29 122
MS.gene65165.t1 AT3G50130 26.752 471 284 18 13 457 123 558 2.24e-28 118
MS.gene65165.t1 AT3G50140 27.033 455 274 15 31 460 115 536 5.29e-27 114
MS.gene65165.t1 AT3G50160 25.333 450 259 15 31 460 106 498 8.60e-27 113
MS.gene65165.t1 AT5G11290 24.888 446 253 14 31 455 35 419 3.16e-25 107
MS.gene65165.t1 AT3G50150 25.367 477 283 16 13 460 74 506 3.33e-25 108
MS.gene65165.t1 AT3G50170 25.926 459 266 19 31 456 115 532 5.93e-25 108
MS.gene65165.t1 AT4G31980 26.471 442 249 18 31 455 295 677 2.16e-24 107
MS.gene65165.t1 AT2G36430 25.055 451 269 15 31 461 47 448 1.70e-21 97.1
MS.gene65165.t1 AT5G22540 26.582 395 223 16 31 410 33 375 5.15e-21 95.5
MS.gene65165.t1 AT3G50190 24.444 450 255 15 31 456 98 486 6.35e-21 95.9
MS.gene65165.t1 AT3G47200 24.330 448 244 18 48 455 63 455 3.85e-20 93.2
MS.gene65165.t1 AT3G47200 24.330 448 244 18 48 455 63 455 3.85e-20 93.2
MS.gene65165.t1 AT5G11290 23.775 408 231 13 69 455 2 350 6.28e-17 82.4
MS.gene65165.t1 AT3G47210 23.454 388 241 12 31 410 95 434 7.79e-17 83.2
MS.gene65165.t1 AT2G28580 23.629 474 252 15 28 463 105 506 4.70e-16 80.9
MS.gene65165.t1 AT2G28580 23.629 474 252 15 28 463 119 520 5.27e-16 80.9
MS.gene65165.t1 AT1G67150 25.380 461 256 19 29 460 6 407 1.85e-15 78.6
MS.gene65165.t1 AT1G67150 25.380 461 256 19 29 460 6 407 1.85e-15 78.6
MS.gene65165.t1 AT1G67150 31.694 183 109 5 288 460 188 364 3.65e-15 77.4
MS.gene65165.t1 AT1G67150 31.694 183 109 5 288 460 235 411 4.84e-15 77.4
MS.gene65165.t1 AT2G28580 23.368 475 269 15 28 463 37 455 1.86e-14 75.9
MS.gene65165.t1 AT2G28580 23.579 475 268 15 28 463 105 523 2.17e-14 75.9
MS.gene65165.t1 AT2G28580 23.579 475 268 15 28 463 119 537 2.78e-14 75.5
MS.gene65165.t1 AT2G44930 30.667 150 95 2 322 463 355 503 2.11e-13 72.8

Find 87 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCTTTGGTCGTGAATTT+TGG 0.136721 7.1:+41657244 None:intergenic
TCATAATATGTTTCTGTATT+AGG 0.154170 7.1:+41655805 None:intergenic
TGTGGCACCCTTTGTATCTT+TGG 0.255947 7.1:+41657231 None:intergenic
ATCGCAGGTAGAGTCAATTT+TGG 0.265135 7.1:+41656057 None:intergenic
CCGATTAAAACAAAGATTAG+AGG 0.288818 7.1:-41656240 MS.gene65165:intron
TGCCGGTTCCTCTTATTATC+TGG 0.293901 7.1:+41656697 None:intergenic
CTCAATAGCTTCACATCTTC+AGG 0.303993 7.1:+41655910 None:intergenic
CTGCCCTGGTTCATCAATCT+TGG 0.314321 7.1:+41656882 None:intergenic
ACGGTAATGATAATCTATTT+TGG 0.343641 7.1:+41655774 None:intergenic
GAAAAGTAGGAATAAGAATT+AGG 0.365913 7.1:-41656134 MS.gene65165:CDS
GTGAAGTCGTTGTCAAAATC+TGG 0.372177 7.1:+41655976 None:intergenic
GCCGATTTGTTCAAAATCAT+AGG 0.374426 7.1:-41655841 MS.gene65165:CDS
GACACATCTCATATGCTATC+AGG 0.391502 7.1:+41655998 None:intergenic
ATAGCCTTCAAGAGACTTGC+CGG 0.396485 7.1:+41656978 None:intergenic
ACCAGGGCAGATGAATATTA+AGG 0.400679 7.1:-41656869 MS.gene65165:CDS
GGTAAATTGTAAACACTGTC+TGG 0.419111 7.1:+41655668 None:intergenic
CTTGATTGCGTCGCCACTGC+CGG 0.425069 7.1:+41656680 None:intergenic
CAATCAAGAGACTAGCAATA+TGG 0.432544 7.1:-41656665 MS.gene65165:CDS
GAATATTAAGGCTGATCAAC+TGG 0.434742 7.1:-41656857 MS.gene65165:CDS
GTGAAGCTATTGAGATCTAA+AGG 0.437203 7.1:-41655901 MS.gene65165:CDS
ATTTCCTCAAATATCACCAT+TGG 0.441241 7.1:-41656726 MS.gene65165:CDS
TTAACCGGCAAGTCTCTTGA+AGG 0.454694 7.1:-41656982 MS.gene65165:CDS
TCGTGGATGTTGTTCGTGGA+TGG 0.456654 7.1:-41656934 MS.gene65165:CDS
CACCAGATAATAAGAGGAAC+CGG 0.474935 7.1:-41656699 MS.gene65165:CDS
GCAATGTAGCTATTGAGAAA+TGG 0.478163 7.1:-41656218 MS.gene65165:CDS
TCCAAGTCTTGCATTTATAA+CGG 0.479888 7.1:+41655755 None:intergenic
ATGCAAGACTTGGATAGCGC+TGG 0.487260 7.1:-41655746 MS.gene65165:CDS
TTTCCTCAAATATCACCATT+GGG 0.487639 7.1:-41656725 MS.gene65165:CDS
AGGACCTATTGACACCAACT+TGG 0.488609 7.1:+41657167 None:intergenic
ATACAAGATCTAAGAAAAGT+AGG 0.492175 7.1:-41656147 MS.gene65165:CDS
GAGAGAAGTACAAGCTTATG+TGG 0.495648 7.1:-41657113 MS.gene65165:CDS
TATTATCTGGTGTGGCCCAA+TGG 0.498664 7.1:+41656710 None:intergenic
AATAGCTTGAGTACTTCATA+AGG 0.505382 7.1:+41656793 None:intergenic
TGCCCCAAGTTGGTGTCAAT+AGG 0.509202 7.1:-41657171 MS.gene65165:CDS
GGGCCACACCAGATAATAAG+AGG 0.510517 7.1:-41656705 MS.gene65165:CDS
GCCTTAATATTCATCTGCCC+TGG 0.510783 7.1:+41656868 None:intergenic
TCGGAGAAATCCATGTCTCT+TGG 0.511888 7.1:+41656093 None:intergenic
GGACCTATTGACACCAACTT+GGG 0.512724 7.1:+41657168 None:intergenic
ATGAAGTACTCAAGCTATTG+TGG 0.515875 7.1:-41656789 MS.gene65165:CDS
TTAGATCTGTATTGCCATGA+TGG 0.523965 7.1:+41657142 None:intergenic
CTGAAGATCAAGAAGATGAG+TGG 0.525381 7.1:+41656582 None:intergenic
CAATTTCTTCATCACTCCCA+AGG 0.526371 7.1:+41655863 None:intergenic
GCGTCACGATGTTGACATAC+AGG 0.527982 7.1:-41656173 MS.gene65165:CDS
TCAACTGGTTATTGTGATGA+TGG 0.529380 7.1:-41656842 MS.gene65165:CDS
AAATGGTATCAGAAGATTCA+AGG 0.530405 7.1:-41656201 MS.gene65165:CDS
TCTGTATTGCCATGATGGAT+AGG 0.535705 7.1:+41657147 None:intergenic
GTGTCGTCCACAACGATCGC+AGG 0.537793 7.1:+41656042 None:intergenic
ATAATAAGAGGAACCGGCAG+TGG 0.537913 7.1:-41656693 MS.gene65165:CDS
TGAAGCTATTGAGATCTAAA+GGG 0.538016 7.1:-41655900 MS.gene65165:CDS
GACAGTGTTTACAATTTACC+CGG 0.538068 7.1:-41655665 MS.gene65165:CDS
GGCAATACAGATCTAACGTT+AGG 0.544248 7.1:-41657135 MS.gene65165:CDS
TGATAACATTGATGAACTGA+AGG 0.548519 7.1:-41657031 MS.gene65165:CDS
TTCACGACCAAAGATACAAA+GGG 0.552352 7.1:-41657238 MS.gene65165:CDS
ACCGTTATAAATGCAAGACT+TGG 0.555953 7.1:-41655756 MS.gene65165:CDS
TCTCATATGCTATCAGGTTG+AGG 0.562944 7.1:+41656004 None:intergenic
TGCAAGACTTGGATAGCGCT+GGG 0.565393 7.1:-41655745 MS.gene65165:CDS
GACTCTACCTGCGATCGTTG+TGG 0.566134 7.1:-41656049 MS.gene65165:CDS
ACATGGATTTCTCCGAAGGA+TGG 0.568276 7.1:-41656086 MS.gene65165:CDS
AAAATATTGTAGAGCTACAA+AGG 0.569557 7.1:-41657290 MS.gene65165:CDS
TCAATAGGTCCTATCCATCA+TGG 0.569865 7.1:-41657156 MS.gene65165:CDS
GTTCCTCTTATTATCTGGTG+TGG 0.571609 7.1:+41656702 None:intergenic
GACACAATGGCCAAGAGACA+TGG 0.572015 7.1:-41656103 MS.gene65165:CDS
TGGCCCAATGGTGATATTTG+AGG 0.577781 7.1:+41656722 None:intergenic
CAAAATCATAGGTACTGACT+TGG 0.580123 7.1:-41655830 MS.gene65165:CDS
TTTCTATTTCTGAGATACTG+TGG 0.590406 7.1:+41657213 None:intergenic
GTTGTCGTGGATGTTGTTCG+TGG 0.591132 7.1:-41656938 MS.gene65165:CDS
AATATGGTTCCAGACAGAAA+AGG 0.594484 7.1:-41656649 MS.gene65165:CDS
ATTCACGACCAAAGATACAA+AGG 0.596083 7.1:-41657239 MS.gene65165:CDS
TCTGGATGAAAGTAAGAGCA+AGG 0.597159 7.1:+41655686 None:intergenic
AAAGCCAAGATTGATGAACC+AGG 0.597886 7.1:-41656886 MS.gene65165:CDS
AGAGACATGGATTTCTCCGA+AGG 0.604368 7.1:-41656090 MS.gene65165:CDS
AATTTCTTCATCACTCCCAA+GGG 0.607817 7.1:+41655864 None:intergenic
AAACACTGGAAGCAATCAGA+AGG 0.608382 7.1:-41657073 MS.gene65165:CDS
CCTTGGGATAAGATGTAGTG+AGG 0.610262 7.1:+41656548 None:intergenic
CCTCACTACATCTTATCCCA+AGG 0.611475 7.1:-41656548 MS.gene65165:intron
ACGAGGATGAATTGATAATG+TGG 0.618142 7.1:-41656756 MS.gene65165:CDS
TGAAGATCAAGAAGATGAGT+GGG 0.623872 7.1:+41656583 None:intergenic
GGAGCATTACTGCCCCAAGT+TGG 0.630204 7.1:-41657181 MS.gene65165:CDS
GCCTTGAAGAAAAGTTGTCG+TGG 0.631104 7.1:-41656951 MS.gene65165:CDS
AGAGAAGTACAAGCTTATGT+GGG 0.632538 7.1:-41657112 MS.gene65165:CDS
GATAACATTGATGAACTGAA+GGG 0.655382 7.1:-41657030 MS.gene65165:CDS
CTGGATGAAAGTAAGAGCAA+GGG 0.657427 7.1:+41655687 None:intergenic
GACCTATTGACACCAACTTG+GGG 0.663266 7.1:+41657169 None:intergenic
AAGCCAAGATTGATGAACCA+GGG 0.669409 7.1:-41656885 MS.gene65165:CDS
TGGGATAAGATGTAGTGAGG+AGG 0.680295 7.1:+41656551 None:intergenic
TTAGGTCAAGCAAGACACAA+TGG 0.686969 7.1:-41656116 MS.gene65165:CDS
ATTGTGGAAAGATAACAACG+AGG 0.856768 7.1:-41656773 MS.gene65165:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATATTTATTATTGTAAG+AGG - chr7.1:41656656-41656675 MS.gene65165:CDS 15.0%
!!! CAGAAATAGAAAATATTTTG+AGG - chr7.1:41655758-41655777 MS.gene65165:CDS 20.0%
!!! TCATAATATGTTTCTGTATT+AGG + chr7.1:41657158-41657177 None:intergenic 20.0%
! AAAATATTGTAGAGCTACAA+AGG - chr7.1:41655670-41655689 MS.gene65165:CDS 25.0%
! ATACAAGATCTAAGAAAAGT+AGG - chr7.1:41656813-41656832 MS.gene65165:CDS 25.0%
! GAAAAGTAGGAATAAGAATT+AGG - chr7.1:41656826-41656845 MS.gene65165:CDS 25.0%
! TCTAATTTCTATTGTACCTT+GGG + chr7.1:41656431-41656450 None:intergenic 25.0%
!! ACCTATGATTTTGAACAAAT+CGG + chr7.1:41657123-41657142 None:intergenic 25.0%
!! ACGGTAATGATAATCTATTT+TGG + chr7.1:41657189-41657208 None:intergenic 25.0%
!! CTCTACAATATTTTCTTGAA+GGG + chr7.1:41655664-41655683 None:intergenic 25.0%
!!! ATCTTTGTTTTAATCGGAAA+TGG + chr7.1:41656717-41656736 None:intergenic 25.0%
!!! CCTCTAATCTTTGTTTTAAT+CGG + chr7.1:41656723-41656742 None:intergenic 25.0%
!!! GACGATGTTTTAATTTTAAC+CGG - chr7.1:41655963-41655982 MS.gene65165:CDS 25.0%
AAATGGTATCAGAAGATTCA+AGG - chr7.1:41656759-41656778 MS.gene65165:CDS 30.0%
AATAGCTTGAGTACTTCATA+AGG + chr7.1:41656170-41656189 None:intergenic 30.0%
ATGGTAGCAAATTTAGAAAC+GGG + chr7.1:41656531-41656550 None:intergenic 30.0%
ATTTCCTCAAATATCACCAT+TGG - chr7.1:41656234-41656253 MS.gene65165:intron 30.0%
CATGGTAGCAAATTTAGAAA+CGG + chr7.1:41656532-41656551 None:intergenic 30.0%
CCGATTAAAACAAAGATTAG+AGG - chr7.1:41656720-41656739 MS.gene65165:CDS 30.0%
CTCTAATTTCTATTGTACCT+TGG + chr7.1:41656432-41656451 None:intergenic 30.0%
GATAACATTGATGAACTGAA+GGG - chr7.1:41655930-41655949 MS.gene65165:CDS 30.0%
GCAAAATACATCAAAAACAC+TGG - chr7.1:41655873-41655892 MS.gene65165:CDS 30.0%
TCCAAGTCTTGCATTTATAA+CGG + chr7.1:41657208-41657227 None:intergenic 30.0%
TGAAGCTATTGAGATCTAAA+GGG - chr7.1:41657060-41657079 MS.gene65165:CDS 30.0%
TGATAACATTGATGAACTGA+AGG - chr7.1:41655929-41655948 MS.gene65165:CDS 30.0%
TTTCCTCAAATATCACCATT+GGG - chr7.1:41656235-41656254 MS.gene65165:intron 30.0%
! ATTTTCTTGAAGGGTAGTTT+GGG + chr7.1:41655655-41655674 None:intergenic 30.0%
! GCTCTACAATATTTTCTTGA+AGG + chr7.1:41655665-41655684 None:intergenic 30.0%
! TATCTTTGGTCGTGAATTTT+GGG + chr7.1:41655718-41655737 None:intergenic 30.0%
! TATTTTCTTGAAGGGTAGTT+TGG + chr7.1:41655656-41655675 None:intergenic 30.0%
!! TTTCTAAATTTGCTACCATG+TGG - chr7.1:41656532-41656551 MS.gene65165:intron 30.0%
!! TTTCTATTTCTGAGATACTG+TGG + chr7.1:41655750-41655769 None:intergenic 30.0%
!!! TAATCATCTTTTTTGCAAGC+CGG + chr7.1:41657317-41657336 None:intergenic 30.0%
!!! TGTTTTAATCGGAAATGGAT+TGG + chr7.1:41656712-41656731 None:intergenic 30.0%
AATATGGTTCCAGACAGAAA+AGG - chr7.1:41656311-41656330 MS.gene65165:intron 35.0%
AATTTCTTCATCACTCCCAA+GGG + chr7.1:41657099-41657118 None:intergenic 35.0%
ACCGTTATAAATGCAAGACT+TGG - chr7.1:41657204-41657223 MS.gene65165:CDS 35.0%
ATTCACGACCAAAGATACAA+AGG - chr7.1:41655721-41655740 MS.gene65165:CDS 35.0%
ATTGTGGAAAGATAACAACG+AGG - chr7.1:41656187-41656206 MS.gene65165:CDS 35.0%
CAATCAAGAGACTAGCAATA+TGG - chr7.1:41656295-41656314 MS.gene65165:intron 35.0%
GAATATTAAGGCTGATCAAC+TGG - chr7.1:41656103-41656122 MS.gene65165:CDS 35.0%
GACAGTGTTTACAATTTACC+CGG - chr7.1:41657295-41657314 MS.gene65165:CDS 35.0%
GAGGATAGTAATAGAGATCA+GGG - chr7.1:41656554-41656573 MS.gene65165:CDS 35.0%
GCAAATTTAGAAACGGGAAA+AGG + chr7.1:41656525-41656544 None:intergenic 35.0%
GCAATGTAGCTATTGAGAAA+TGG - chr7.1:41656742-41656761 MS.gene65165:CDS 35.0%
GGTAAATTGTAAACACTGTC+TGG + chr7.1:41657295-41657314 None:intergenic 35.0%
GTGAAGCTATTGAGATCTAA+AGG - chr7.1:41657059-41657078 MS.gene65165:CDS 35.0%
TCAACTGGTTATTGTGATGA+TGG - chr7.1:41656118-41656137 MS.gene65165:CDS 35.0%
TGAAGATCAAGAAGATGAGT+GGG + chr7.1:41656380-41656399 None:intergenic 35.0%
TTAGATCTGTATTGCCATGA+TGG + chr7.1:41655821-41655840 None:intergenic 35.0%
TTCACGACCAAAGATACAAA+GGG - chr7.1:41655722-41655741 MS.gene65165:CDS 35.0%
! AGAGAAGTACAAGCTTATGT+GGG - chr7.1:41655848-41655867 MS.gene65165:CDS 35.0%
! ATCTTTGGTCGTGAATTTTG+GGG + chr7.1:41655717-41655736 None:intergenic 35.0%
! ATGAAGTACTCAAGCTATTG+TGG - chr7.1:41656171-41656190 MS.gene65165:CDS 35.0%
! GTATCTTTGGTCGTGAATTT+TGG + chr7.1:41655719-41655738 None:intergenic 35.0%
! TGTTCTTTTCCTTTTCTGTC+TGG + chr7.1:41656323-41656342 None:intergenic 35.0%
! TTGTTCTTTTGCAGCTTTCA+TGG - chr7.1:41657010-41657029 MS.gene65165:CDS 35.0%
!! ACGAGGATGAATTGATAATG+TGG - chr7.1:41656204-41656223 MS.gene65165:CDS 35.0%
!! CAAAATCATAGGTACTGACT+TGG - chr7.1:41657130-41657149 MS.gene65165:CDS 35.0%
!! GCCGATTTGTTCAAAATCAT+AGG - chr7.1:41657119-41657138 MS.gene65165:CDS 35.0%
!! TTTTGGAAAGAACCATCCTT+CGG + chr7.1:41656889-41656908 None:intergenic 35.0%
!!! AATCATCTTTTTTGCAAGCC+GGG + chr7.1:41657316-41657335 None:intergenic 35.0%
AAACACTGGAAGCAATCAGA+AGG - chr7.1:41655887-41655906 MS.gene65165:CDS 40.0%
AAAGCCAAGATTGATGAACC+AGG - chr7.1:41656074-41656093 MS.gene65165:CDS 40.0%
AAGCCAAGATTGATGAACCA+GGG - chr7.1:41656075-41656094 MS.gene65165:CDS 40.0%
ACCAGGGCAGATGAATATTA+AGG - chr7.1:41656091-41656110 MS.gene65165:CDS 40.0%
CAATTTCTTCATCACTCCCA+AGG + chr7.1:41657100-41657119 None:intergenic 40.0%
CACCAGATAATAAGAGGAAC+CGG - chr7.1:41656261-41656280 MS.gene65165:intron 40.0%
CTCAATAGCTTCACATCTTC+AGG + chr7.1:41657053-41657072 None:intergenic 40.0%
CTCTATTACTATCCTCCACA+TGG + chr7.1:41656550-41656569 None:intergenic 40.0%
CTGAAGATCAAGAAGATGAG+TGG + chr7.1:41656381-41656400 None:intergenic 40.0%
CTGGATGAAAGTAAGAGCAA+GGG + chr7.1:41657276-41657295 None:intergenic 40.0%
GACACATCTCATATGCTATC+AGG + chr7.1:41656965-41656984 None:intergenic 40.0%
GGAGGATAGTAATAGAGATC+AGG - chr7.1:41656553-41656572 MS.gene65165:CDS 40.0%
GGCAATACAGATCTAACGTT+AGG - chr7.1:41655825-41655844 MS.gene65165:CDS 40.0%
GTGAAGTCGTTGTCAAAATC+TGG + chr7.1:41656987-41657006 None:intergenic 40.0%
GTTCCTCTTATTATCTGGTG+TGG + chr7.1:41656261-41656280 None:intergenic 40.0%
TCAATAGGTCCTATCCATCA+TGG - chr7.1:41655804-41655823 MS.gene65165:CDS 40.0%
TCTGGATGAAAGTAAGAGCA+AGG + chr7.1:41657277-41657296 None:intergenic 40.0%
TTAGGTCAAGCAAGACACAA+TGG - chr7.1:41656844-41656863 MS.gene65165:CDS 40.0%
! ATCGCAGGTAGAGTCAATTT+TGG + chr7.1:41656906-41656925 None:intergenic 40.0%
! GAGAGAAGTACAAGCTTATG+TGG - chr7.1:41655847-41655866 MS.gene65165:CDS 40.0%
! GGATTTTGCTCAATTCCCTT+GGG - chr7.1:41657081-41657100 MS.gene65165:CDS 40.0%
! TCCACGACAACTTTTCTTCA+AGG + chr7.1:41656013-41656032 None:intergenic 40.0%
! TCTCATATGCTATCAGGTTG+AGG + chr7.1:41656959-41656978 None:intergenic 40.0%
!! CTAAATTTGCTACCATGTGG+AGG - chr7.1:41656535-41656554 MS.gene65165:intron 40.0%
!! TCTGTATTGCCATGATGGAT+AGG + chr7.1:41655816-41655835 None:intergenic 40.0%
!!! GATGATGGATGTGCTTTTGT+TGG - chr7.1:41656133-41656152 MS.gene65165:CDS 40.0%
ACATGGATTTCTCCGAAGGA+TGG - chr7.1:41656874-41656893 MS.gene65165:CDS 45.0%
AGAGACATGGATTTCTCCGA+AGG - chr7.1:41656870-41656889 MS.gene65165:CDS 45.0%
AGGACCTATTGACACCAACT+TGG + chr7.1:41655796-41655815 None:intergenic 45.0%
ATAATAAGAGGAACCGGCAG+TGG - chr7.1:41656267-41656286 MS.gene65165:intron 45.0%
ATAGCCTTCAAGAGACTTGC+CGG + chr7.1:41655985-41656004 None:intergenic 45.0%
CCTCACTACATCTTATCCCA+AGG - chr7.1:41656412-41656431 MS.gene65165:intron 45.0%
CCTTGGGATAAGATGTAGTG+AGG + chr7.1:41656415-41656434 None:intergenic 45.0%
GACCTATTGACACCAACTTG+GGG + chr7.1:41655794-41655813 None:intergenic 45.0%
GCCTTAATATTCATCTGCCC+TGG + chr7.1:41656095-41656114 None:intergenic 45.0%
GCCTTGAAGAAAAGTTGTCG+TGG - chr7.1:41656009-41656028 MS.gene65165:CDS 45.0%
GGACCTATTGACACCAACTT+GGG + chr7.1:41655795-41655814 None:intergenic 45.0%
TATTATCTGGTGTGGCCCAA+TGG + chr7.1:41656253-41656272 None:intergenic 45.0%
TCGGAGAAATCCATGTCTCT+TGG + chr7.1:41656870-41656889 None:intergenic 45.0%
TGGCCCAATGGTGATATTTG+AGG + chr7.1:41656241-41656260 None:intergenic 45.0%
TGGGATAAGATGTAGTGAGG+AGG + chr7.1:41656412-41656431 None:intergenic 45.0%
TGTGGCACCCTTTGTATCTT+TGG + chr7.1:41655732-41655751 None:intergenic 45.0%
TTAACCGGCAAGTCTCTTGA+AGG - chr7.1:41655978-41655997 MS.gene65165:CDS 45.0%
! GGGATTTTGCTCAATTCCCT+TGG - chr7.1:41657080-41657099 MS.gene65165:CDS 45.0%
!! TGCCGGTTCCTCTTATTATC+TGG + chr7.1:41656266-41656285 None:intergenic 45.0%
!! AAAATAAAATAATTAATACT+AGG - chr7.1:41656584-41656603 MS.gene65165:CDS 5.0%
ATGCAAGACTTGGATAGCGC+TGG - chr7.1:41657214-41657233 MS.gene65165:CDS 50.0%
CTGCCCTGGTTCATCAATCT+TGG + chr7.1:41656081-41656100 None:intergenic 50.0%
GACACAATGGCCAAGAGACA+TGG - chr7.1:41656857-41656876 MS.gene65165:CDS 50.0%
GCGTCACGATGTTGACATAC+AGG - chr7.1:41656787-41656806 MS.gene65165:CDS 50.0%
GGGCCACACCAGATAATAAG+AGG - chr7.1:41656255-41656274 MS.gene65165:intron 50.0%
GTTGTCGTGGATGTTGTTCG+TGG - chr7.1:41656022-41656041 MS.gene65165:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG - chr7.1:41656026-41656045 MS.gene65165:CDS 50.0%
TGCAAGACTTGGATAGCGCT+GGG - chr7.1:41657215-41657234 MS.gene65165:CDS 50.0%
!! TGCCCCAAGTTGGTGTCAAT+AGG - chr7.1:41655789-41655808 MS.gene65165:CDS 50.0%
GACTCTACCTGCGATCGTTG+TGG - chr7.1:41656911-41656930 MS.gene65165:CDS 55.0%
! GGAGCATTACTGCCCCAAGT+TGG - chr7.1:41655779-41655798 MS.gene65165:CDS 55.0%
CTTGATTGCGTCGCCACTGC+CGG + chr7.1:41656283-41656302 None:intergenic 60.0%
GTGTCGTCCACAACGATCGC+AGG + chr7.1:41656921-41656940 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 41655645 41657337 41655645 ID=MS.gene65165
chr7.1 mRNA 41655645 41657337 41655645 ID=MS.gene65165.t1;Parent=MS.gene65165
chr7.1 exon 41656549 41657337 41656549 ID=MS.gene65165.t1.exon1;Parent=MS.gene65165.t1
chr7.1 CDS 41656549 41657337 41656549 ID=cds.MS.gene65165.t1;Parent=MS.gene65165.t1
chr7.1 exon 41655645 41656247 41655645 ID=MS.gene65165.t1.exon2;Parent=MS.gene65165.t1
chr7.1 CDS 41655645 41656247 41655645 ID=cds.MS.gene65165.t1;Parent=MS.gene65165.t1
Gene Sequence

>MS.gene65165

ATGGCATCCCAAACTACCCTTCAAGAAAATATTGTAGAGCTACAAAGGTACATAGATACAGATCAAACACCCCAAAATTCACGACCAAAGATACAAAGGGTGCCACAGTATCTCAGAAATAGAAAATATTTTGAGGAGCATTACTGCCCCAAGTTGGTGTCAATAGGTCCTATCCATCATGGCAATACAGATCTAACGTTAGGAGAGAAGTACAAGCTTATGTGGGCAGCAAAATACATCAAAAACACTGGAAGCAATCAGAAGGATCTACACAAAAAGATCGCTGATAACATTGATGAACTGAAGGGTCATTTTAGCGACGATGTTTTAATTTTAACCGGCAAGTCTCTTGAAGGCTATCATAGCCTTGAAGAAAAGTTGTCGTGGATGTTGTTCGTGGATGGATGTTCTTTGCTGCATATCTTAGAGAAAGCCAAGATTGATGAACCAGGGCAGATGAATATTAAGGCTGATCAACTGGTTATTGTGATGATGGATGTGCTTTTGTTGGAGAATCAACTTCCTTATGAAGTACTCAAGCTATTGTGGAAAGATAACAACGAGGATGAATTGATAATGTGGATGAAAAATTTCCTCAAATATCACCATTGGGCCACACCAGATAATAAGAGGAACCGGCAGTGGCGACGCAATCAAGAGACTAGCAATATGGTTCCAGACAGAAAAGGAAAAGAACAACATCGTGTATCAATAAGATATATATCAGAGACACCCACTCATCTTCTTGATCTTCAGCGTAATATCCTCCTCACTACATCTTATCCCAAGGTACAATAGAAATTAGAGACAAAAGTAAAATTTGTTACTACATTTTTGTCTTATTAAAACTTAACAACAAAATTAGAAACAGATTTTGCCTTTTCCCGTTTCTAAATTTGCTACCATGTGGAGGATAGTAATAGAGATCAGGGTTAAACTAAAATAAAATAATTAATACTAGGTAGAAAGATAAAATAACACTAGTTTTAAAATAATTTTTCTTTGCAAAATGTAATATTTATTATTGTAAGAGGAAATAAATTTTGAAATTCTATTGTTCTGATCCAATCCATTTCCGATTAAAACAAAGATTAGAGGCAATGTAGCTATTGAGAAATGGTATCAGAAGATTCAAGGTGAAAGCGTCACGATGTTGACATACAGGAGCATACAAGATCTAAGAAAAGTAGGAATAAGAATTAGGTCAAGCAAGACACAATGGCCAAGAGACATGGATTTCTCCGAAGGATGGTTCTTTCCAAAATTGACTCTACCTGCGATCGTTGTGGACGACACATCAGCTGCTACTTACCTCAACCTGATAGCATATGAGATGTGTCCAGATTTTGACAACGACTTCACAATTTGTTCTTTTGCAGCTTTCATGGACTCACTCATTGAGCATCCTGAAGATGTGAAGCTATTGAGATCTAAAGGGATTTTGCTCAATTCCCTTGGGAGTGATGAAGAAATTGCCGATTTGTTCAAAATCATAGGTACTGACTTGGTACCTAATACAGAAACATATTATGAAGTTAGAGCCAAAATAGATTATCATTACCGTTATAAATGCAAGACTTGGATAGCGCTGGGTTATTACACTTACTTCAGCATTGCTGCATTTATCGCCCTTGCTCTTACTTTCATCCAGACAGTGTTTACAATTTACCCGGCTTGCAAAAAAGATGATTAG
Protein sequence

>MS.gene65165.t1

MASQTTLQENIVELQRYIDTDQTPQNSRPKIQRVPQYLRNRKYFEEHYCPKLVSIGPIHHGNTDLTLGEKYKLMWAAKYIKNTGSNQKDLHKKIADNIDELKGHFSDDVLILTGKSLEGYHSLEEKLSWMLFVDGCSLLHILEKAKIDEPGQMNIKADQLVIVMMDVLLLENQLPYEVLKLLWKDNNEDELIMWMKNFLKYHHWATPDNKRNRQWRRNQETSNMVPDRKGKEQHRVSIRYISETPTHLLDLQRNILLTTSYPKIRGNVAIEKWYQKIQGESVTMLTYRSIQDLRKVGIRIRSSKTQWPRDMDFSEGWFFPKLTLPAIVVDDTSAATYLNLIAYEMCPDFDNDFTICSFAAFMDSLIEHPEDVKLLRSKGILLNSLGSDEEIADLFKIIGTDLVPNTETYYEVRAKIDYHYRYKCKTWIALGYYTYFSIAAFIALALTFIQTVFTIYPACKKDD