Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65265.t1 | AIY27528.1 | 100 | 250 | 0 | 0 | 1 | 250 | 1 | 250 | 8.20E-141 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65265.t1 | P48534 | 95.2 | 250 | 12 | 0 | 1 | 250 | 1 | 250 | 2.1e-137 | 489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65265.t1 | A0A0H3UW77 | 100.0 | 250 | 0 | 0 | 1 | 250 | 1 | 250 | 5.9e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37417 | MS.gene65265 | PPI |
| MS.gene066508 | MS.gene65265 | PPI |
| MS.gene015008 | MS.gene65265 | PPI |
| MS.gene32806 | MS.gene65265 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65265.t1 | MTR_4g061140 | 99.200 | 250 | 2 | 0 | 1 | 250 | 1 | 250 | 0.0 | 506 |
| MS.gene65265.t1 | MTR_4g061140 | 99.187 | 246 | 2 | 0 | 1 | 246 | 1 | 246 | 0.0 | 498 |
| MS.gene65265.t1 | MTR_4g061140 | 96.296 | 216 | 8 | 0 | 35 | 250 | 1 | 216 | 1.43e-153 | 426 |
| MS.gene65265.t1 | MTR_5g022510 | 64.167 | 240 | 85 | 1 | 8 | 247 | 6 | 244 | 8.95e-114 | 328 |
| MS.gene65265.t1 | MTR_4g073410 | 63.223 | 242 | 88 | 1 | 7 | 248 | 6 | 246 | 7.53e-110 | 318 |
| MS.gene65265.t1 | MTR_5g022510 | 64.251 | 207 | 73 | 1 | 41 | 247 | 14 | 219 | 1.45e-96 | 283 |
| MS.gene65265.t1 | MTR_5g008440 | 81.437 | 167 | 17 | 1 | 80 | 246 | 29 | 181 | 3.40e-91 | 267 |
| MS.gene65265.t1 | MTR_3g088160 | 46.094 | 256 | 112 | 6 | 16 | 246 | 101 | 355 | 6.60e-68 | 214 |
| MS.gene65265.t1 | MTR_3g088160 | 46.094 | 256 | 112 | 6 | 16 | 246 | 101 | 355 | 1.84e-67 | 215 |
| MS.gene65265.t1 | MTR_3g107060 | 39.407 | 236 | 120 | 7 | 20 | 246 | 93 | 314 | 3.72e-40 | 141 |
| MS.gene65265.t1 | MTR_4g122640 | 30.233 | 215 | 106 | 8 | 73 | 248 | 112 | 321 | 6.06e-15 | 73.6 |
| MS.gene65265.t1 | MTR_0155s0040 | 28.986 | 207 | 112 | 7 | 73 | 249 | 100 | 301 | 1.17e-14 | 72.4 |
| MS.gene65265.t1 | MTR_8g087680 | 68.293 | 41 | 13 | 0 | 66 | 106 | 32 | 72 | 1.05e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65265.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene65265.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene65265.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene65265.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene65265.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene65265.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene65265.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene65265.t1 | AT1G07890 | 80.567 | 247 | 48 | 0 | 1 | 247 | 1 | 247 | 7.87e-154 | 428 |
| MS.gene65265.t1 | AT3G09640 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.05e-149 | 417 |
| MS.gene65265.t1 | AT3G09640 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.05e-149 | 417 |
| MS.gene65265.t1 | AT4G35000 | 66.942 | 242 | 79 | 1 | 6 | 247 | 4 | 244 | 1.34e-116 | 335 |
| MS.gene65265.t1 | AT4G35970 | 60.166 | 241 | 94 | 2 | 7 | 247 | 4 | 242 | 1.99e-100 | 294 |
| MS.gene65265.t1 | AT4G35970 | 59.361 | 219 | 87 | 2 | 7 | 225 | 4 | 220 | 1.74e-89 | 264 |
| MS.gene65265.t1 | AT1G77490 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 9.72e-68 | 215 |
| MS.gene65265.t1 | AT1G77490 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 1.04e-67 | 215 |
| MS.gene65265.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.16e-66 | 209 |
| MS.gene65265.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.16e-66 | 209 |
| MS.gene65265.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.16e-66 | 209 |
| MS.gene65265.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 106 | 360 | 1.04e-65 | 208 |
| MS.gene65265.t1 | AT4G08390 | 42.969 | 256 | 94 | 8 | 16 | 246 | 107 | 335 | 1.21e-53 | 177 |
| MS.gene65265.t1 | AT4G32320 | 36.653 | 251 | 125 | 7 | 5 | 246 | 98 | 323 | 1.36e-38 | 137 |
| MS.gene65265.t1 | AT4G31760 | 32.663 | 199 | 84 | 7 | 91 | 246 | 118 | 309 | 2.38e-17 | 80.1 |
| MS.gene65265.t1 | AT3G28200 | 26.786 | 280 | 156 | 10 | 12 | 247 | 26 | 300 | 1.78e-14 | 72.0 |
| MS.gene65265.t1 | AT4G33420 | 32.474 | 194 | 96 | 8 | 82 | 245 | 119 | 307 | 1.21e-13 | 69.7 |
| MS.gene65265.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 43 | 262 | 1.27e-13 | 69.3 |
| MS.gene65265.t1 | AT4G33420 | 32.474 | 194 | 96 | 8 | 82 | 245 | 166 | 354 | 1.43e-13 | 69.7 |
| MS.gene65265.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 108 | 327 | 2.27e-13 | 69.3 |
| MS.gene65265.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 155 | 374 | 4.79e-13 | 68.6 |
Find 84 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTGCTGTTGAGATTAC+TGG | 0.232804 | 4.3:+41254919 | MS.gene65265:CDS |
| TGATATCGCTGTTAGGCTTT+TGG | 0.241502 | 4.3:+41254747 | MS.gene65265:CDS |
| TCGCCTTCTCAACAGCCTTT+TGG | 0.306455 | 4.3:-41254150 | None:intergenic |
| AAGCTCAGCTTGGTGCTTGA+TGG | 0.336855 | 4.3:-41254701 | None:intergenic |
| TCAACAAGTGGGCGGAATAC+AGG | 0.362317 | 4.3:-41256358 | None:intergenic |
| CGCTCCTCTTATGCTCCGTT+TGG | 0.364102 | 4.3:+41254210 | MS.gene65265:CDS |
| CAGGACATTGTTGCTCTGTC+TGG | 0.376017 | 4.3:+41255777 | MS.gene65265:CDS |
| ACAAAGACTGGTGGTCCTTT+CGG | 0.381599 | 4.3:+41254676 | MS.gene65265:CDS |
| CGACCCTCTGGTGGTGGCTC+AGG | 0.382379 | 4.3:-41255598 | None:intergenic |
| GCTGCACACAAGGAGCGTTC+TGG | 0.387014 | 4.3:+41256119 | MS.gene65265:CDS |
| TCTTCAGTTGCCAAGTGATA+AGG | 0.411660 | 4.3:+41256321 | MS.gene65265:CDS |
| AAATCAGCATAGCTAATGAT+TGG | 0.419318 | 4.3:-41254790 | None:intergenic |
| ACGGTCTTGATATCGCTGTT+AGG | 0.422947 | 4.3:+41254740 | MS.gene65265:CDS |
| TGCAGGTTCTGACCATTTGA+GGG | 0.426677 | 4.3:+41255722 | MS.gene65265:intron |
| TTGTGTAGATGGCACTCTGC+TGG | 0.426968 | 4.3:+41254637 | MS.gene65265:intron |
| TGAAATGATTAGGGAGTTGT+TGG | 0.432563 | 4.3:+41256279 | MS.gene65265:intron |
| CACTAACCCTTGGTGGCATC+AGG | 0.433823 | 4.3:-41255625 | None:intergenic |
| CCGGGGTGGAAAGGAACTTC+AGG | 0.436434 | 4.3:-41254946 | None:intergenic |
| GGATGTGTTTGGCAAAGCTA+TGG | 0.443040 | 4.3:+41255743 | MS.gene65265:CDS |
| ATTGGGAATTGCTCCTTAAG+AGG | 0.447187 | 4.3:-41254772 | None:intergenic |
| TTTGATTCAAAGACAAAGAC+TGG | 0.447588 | 4.3:+41254664 | MS.gene65265:CDS |
| CAAGGAGCGTTCTGGATTTG+AGG | 0.450558 | 4.3:+41256127 | MS.gene65265:CDS |
| GGAGTTGTTGGGTGGTGAGA+AGG | 0.456331 | 4.3:+41256291 | MS.gene65265:CDS |
| TTGCAGGTTCTGACCATTTG+AGG | 0.456831 | 4.3:+41255721 | MS.gene65265:intron |
| GGCAAGCGACCCTCTGGTGG+TGG | 0.457136 | 4.3:-41255604 | None:intergenic |
| GGTAATCAGCACTCACGGTT+GGG | 0.463922 | 4.3:-41254129 | None:intergenic |
| GCATCAGGCAAGCGACCCTC+TGG | 0.466554 | 4.3:-41255610 | None:intergenic |
| GACCATTTGAGGGATGTGTT+TGG | 0.471367 | 4.3:+41255732 | MS.gene65265:CDS |
| ATCAAAAGCTATCTGAGCTT+GGG | 0.472564 | 4.3:+41256545 | MS.gene65265:CDS |
| CATCAAAAGCTATCTGAGCT+TGG | 0.474904 | 4.3:+41256544 | MS.gene65265:CDS |
| CTCAAAAGTGCCTTATCACT+TGG | 0.477819 | 4.3:-41256331 | None:intergenic |
| TACGCCAAACGGAGCATAAG+AGG | 0.478986 | 4.3:-41254214 | None:intergenic |
| TTTGTGGTTATGCAGTTGGC+TGG | 0.479033 | 4.3:+41254895 | MS.gene65265:intron |
| AAAATAAAACTTACGCCAAA+CGG | 0.488936 | 4.3:-41254225 | None:intergenic |
| TATCACTTGGCAACTGAAGA+AGG | 0.489890 | 4.3:-41256318 | None:intergenic |
| CACCATGAGCAAGCTCAGCT+TGG | 0.497717 | 4.3:-41254711 | None:intergenic |
| GATGTGTTTGGCAAAGCTAT+GGG | 0.498498 | 4.3:+41255744 | MS.gene65265:CDS |
| AATCAGCATAGCTAATGATT+GGG | 0.504612 | 4.3:-41254789 | None:intergenic |
| TGCCAAACACATCCCTCAAA+TGG | 0.508400 | 4.3:-41255734 | None:intergenic |
| AAGGAGCGTTCTGGATTTGA+GGG | 0.511703 | 4.3:+41256128 | MS.gene65265:CDS |
| CACCAAGCTGAGCTTGCTCA+TGG | 0.514212 | 4.3:+41254709 | MS.gene65265:CDS |
| AGCTATGGGGCTTAGTGACC+AGG | 0.514461 | 4.3:+41255758 | MS.gene65265:CDS |
| TAGTAAACGTACCTCCCTAC+CGG | 0.522438 | 4.3:-41254965 | None:intergenic |
| AAGTTCCTTTCCACCCCGGT+AGG | 0.526103 | 4.3:+41254950 | MS.gene65265:CDS |
| ATGAGAGGATTAGAAGTCCA+TGG | 0.528007 | 4.3:-41256152 | None:intergenic |
| CAACAAGTGGGCGGAATACA+GGG | 0.530888 | 4.3:-41256357 | None:intergenic |
| ACCTCCCTACCGGGGTGGAA+AGG | 0.535670 | 4.3:-41254955 | None:intergenic |
| AGTAAACGTACCTCCCTACC+GGG | 0.538079 | 4.3:-41254964 | None:intergenic |
| GACATTGTTGCTCTGTCTGG+TGG | 0.546009 | 4.3:+41255780 | MS.gene65265:CDS |
| CGTGAGTGCTGATTACCAAA+AGG | 0.551875 | 4.3:+41254135 | MS.gene65265:CDS |
| TCCAGAACACTAACCCTTGG+TGG | 0.552948 | 4.3:-41255632 | None:intergenic |
| TCGCTTGCCTGATGCCACCA+AGG | 0.554221 | 4.3:+41255618 | MS.gene65265:CDS |
| TGGTAATCAGCACTCACGGT+TGG | 0.557293 | 4.3:-41254130 | None:intergenic |
| CGCTTGCCTGATGCCACCAA+GGG | 0.557551 | 4.3:+41255619 | MS.gene65265:CDS |
| AGTTCCTTTCCACCCCGGTA+GGG | 0.567360 | 4.3:+41254951 | MS.gene65265:CDS |
| TCAGGCAAGCGACCCTCTGG+TGG | 0.568572 | 4.3:-41255607 | None:intergenic |
| CACAGGTTTGCAGAAGCCTA+AGG | 0.569562 | 4.3:+41256686 | MS.gene65265:intron |
| GCAGCATATTTCTCAACAAG+TGG | 0.582870 | 4.3:-41256370 | None:intergenic |
| TTACCAAAAGGCTGTTGAGA+AGG | 0.586567 | 4.3:+41254147 | MS.gene65265:CDS |
| TCCTTTCCACCCCGGTAGGG+AGG | 0.587045 | 4.3:+41254954 | MS.gene65265:CDS |
| TTGGTAGGGAGCTGCACACA+AGG | 0.589477 | 4.3:+41256109 | MS.gene65265:intron |
| GTTGCTGTTGAGATTACTGG+TGG | 0.592645 | 4.3:+41254922 | MS.gene65265:CDS |
| TAGCTATGCTGATTTCTACC+AGG | 0.595859 | 4.3:+41254798 | MS.gene65265:CDS |
| CAAGCCTGAGCCACCACCAG+AGG | 0.599599 | 4.3:+41255594 | MS.gene65265:CDS |
| GTTCTGGATTTGAGGGCCCA+TGG | 0.602005 | 4.3:+41256135 | MS.gene65265:CDS |
| CAGACAGAGCAACAATGTCC+TGG | 0.604472 | 4.3:-41255776 | None:intergenic |
| GAAATGATTAGGGAGTTGTT+GGG | 0.614317 | 4.3:+41256280 | MS.gene65265:intron |
| TGAGAGGATTAGAAGTCCAT+GGG | 0.619251 | 4.3:-41256151 | None:intergenic |
| AAGCCTGAGCCACCACCAGA+GGG | 0.625588 | 4.3:+41255595 | MS.gene65265:CDS |
| CCTGAAGTTCCTTTCCACCC+CGG | 0.635685 | 4.3:+41254946 | MS.gene65265:CDS |
| GATTCAAAGACAAAGACTGG+TGG | 0.639755 | 4.3:+41254667 | MS.gene65265:CDS |
| TTTCTTTGCTGATTATGCCG+AGG | 0.640041 | 4.3:+41256519 | MS.gene65265:CDS |
| CAGCATATTTCTCAACAAGT+GGG | 0.640937 | 4.3:-41256369 | None:intergenic |
| AGGCTGTTGAGAAGGCGAAG+AGG | 0.646869 | 4.3:+41254155 | MS.gene65265:CDS |
| ATGTGTTTGGCAAAGCTATG+GGG | 0.650358 | 4.3:+41255745 | MS.gene65265:CDS |
| AGTCAATACATACAATGGTG+TGG | 0.652135 | 4.3:-41255803 | None:intergenic |
| AAGGCGAAGAGGAAGCTCAG+AGG | 0.652638 | 4.3:+41254166 | MS.gene65265:CDS |
| CTTGCTCATGGTGCTAACAA+CGG | 0.654051 | 4.3:+41254721 | MS.gene65265:CDS |
| TGGTGCTTGATGGTTCCGAA+AGG | 0.654886 | 4.3:-41254691 | None:intergenic |
| TTGTTGGGTGGTGAGAAGGA+AGG | 0.658316 | 4.3:+41256295 | MS.gene65265:CDS |
| AACGTACCTCCCTACCGGGG+TGG | 0.660383 | 4.3:-41254960 | None:intergenic |
| ATGATTAGGGAGTTGTTGGG+TGG | 0.662546 | 4.3:+41256283 | MS.gene65265:intron |
| CATATTTCTCAACAAGTGGG+CGG | 0.689114 | 4.3:-41256366 | None:intergenic |
| GTAAACGTACCTCCCTACCG+GGG | 0.769408 | 4.3:-41254963 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAACTCA+AGG | - | chr4.3:41255164-41255183 | None:intergenic | 10.0% |
| !! | CCAAATATAAAAAATAAATA+GGG | - | chr4.3:41255535-41255554 | None:intergenic | 10.0% |
| !! | TATATATTTATTTATCTTCA+AGG | + | chr4.3:41256592-41256611 | MS.gene65265:intron | 10.0% |
| !! | TCCAAATATAAAAAATAAAT+AGG | - | chr4.3:41255536-41255555 | None:intergenic | 10.0% |
| !! | TTAAAACACAAAAAAAAATA+GGG | - | chr4.3:41256235-41256254 | None:intergenic | 10.0% |
| !!! | ATTATCTAAGTTTTAAATTA+TGG | + | chr4.3:41255949-41255968 | MS.gene65265:intron | 10.0% |
| !!! | TATTTATTTTTTATATTTGG+AGG | + | chr4.3:41255535-41255554 | MS.gene65265:intron | 10.0% |
| !!! | TTTAAAACACAAAAAAAAAT+AGG | - | chr4.3:41256236-41256255 | None:intergenic | 10.0% |
| !!! | ATCTGTTTGAATATTTTTTT+GGG | + | chr4.3:41254436-41254455 | MS.gene65265:intron | 15.0% |
| !!! | ATTATCAAAGTTTTAAACTA+TGG | + | chr4.3:41255885-41255904 | MS.gene65265:intron | 15.0% |
| !!! | CCCTATTTATTTTTTATATT+TGG | + | chr4.3:41255532-41255551 | MS.gene65265:intron | 15.0% |
| !! | AGGAATATTAAATCTACATA+CGG | - | chr4.3:41256395-41256414 | None:intergenic | 20.0% |
| !! | GATAATTAAACCAAAACAAA+AGG | - | chr4.3:41255570-41255589 | None:intergenic | 20.0% |
| !! | TAAAATTGATTGTAGTTGTT+TGG | + | chr4.3:41255676-41255695 | MS.gene65265:intron | 20.0% |
| !! | TATACTTAATGTAATTGGTA+GGG | + | chr4.3:41256095-41256114 | MS.gene65265:intron | 20.0% |
| !! | TTATACTTAATGTAATTGGT+AGG | + | chr4.3:41256094-41256113 | MS.gene65265:intron | 20.0% |
| !! | TTGGTTATACTTAATGTAAT+TGG | + | chr4.3:41256090-41256109 | MS.gene65265:intron | 20.0% |
| !!! | AAACAACTACAATCAATTTT+AGG | - | chr4.3:41255677-41255696 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTGGGATGAAT+CGG | + | chr4.3:41254445-41254464 | MS.gene65265:intron | 20.0% |
| !!! | AATCCTTTTCATCATATTAT+TGG | + | chr4.3:41256420-41256439 | MS.gene65265:intron | 20.0% |
| !!! | ATGATGTTTCTTTAACTTTT+TGG | + | chr4.3:41255045-41255064 | MS.gene65265:intron | 20.0% |
| !!! | ATGATTTGACAATCAATTTT+TGG | + | chr4.3:41255098-41255117 | MS.gene65265:intron | 20.0% |
| !!! | ATGATTTGTTTGAGATTTTT+TGG | + | chr4.3:41254408-41254427 | MS.gene65265:intron | 20.0% |
| !!! | ATTTTCTGCTTATTTTTTGT+AGG | + | chr4.3:41254243-41254262 | MS.gene65265:intron | 20.0% |
| !!! | GATCTGTTTGAATATTTTTT+TGG | + | chr4.3:41254435-41254454 | MS.gene65265:intron | 20.0% |
| !!! | TTTAAAGTCAATACATACAA+TGG | - | chr4.3:41255811-41255830 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGGTTTAATTATC+AGG | + | chr4.3:41255570-41255589 | MS.gene65265:intron | 20.0% |
| ! | AAAATAAAACTTACGCCAAA+CGG | - | chr4.3:41254228-41254247 | None:intergenic | 25.0% |
| ! | AAACGCATTTGCAATTATTA+CGG | + | chr4.3:41255252-41255271 | MS.gene65265:intron | 25.0% |
| ! | AATCCAAAAACTCATTGATA+AGG | - | chr4.3:41255347-41255366 | None:intergenic | 25.0% |
| ! | ACAAAAAAAAATAGGGCAAT+GGG | - | chr4.3:41256228-41256247 | None:intergenic | 25.0% |
| ! | ATGATGAAAAGGATTATCAT+AGG | - | chr4.3:41256415-41256434 | None:intergenic | 25.0% |
| ! | ATGCCAATAATATGATGAAA+AGG | - | chr4.3:41256426-41256445 | None:intergenic | 25.0% |
| ! | TGATGTTGTTGAAATGATTA+GGG | + | chr4.3:41256270-41256289 | MS.gene65265:intron | 25.0% |
| ! | TTCATGTGGTATATAATGAT+AGG | + | chr4.3:41255130-41255149 | MS.gene65265:intron | 25.0% |
| ! | TTGATGTTGTTGAAATGATT+AGG | + | chr4.3:41256269-41256288 | MS.gene65265:intron | 25.0% |
| ! | TTTCTCATTGTTGATGTAAA+TGG | + | chr4.3:41254995-41255014 | MS.gene65265:intron | 25.0% |
| !! | ATTTGATTCTTGATTTTTGC+AGG | + | chr4.3:41255705-41255724 | MS.gene65265:intron | 25.0% |
| !! | TTTGGTTATAACTTTTCATG+TGG | + | chr4.3:41255116-41255135 | MS.gene65265:intron | 25.0% |
| !! | TTTTATATTTGGAGGCTAAT+TGG | + | chr4.3:41255543-41255562 | MS.gene65265:intron | 25.0% |
| !!! | ATATTTTTTTGGGATGAATC+GGG | + | chr4.3:41254446-41254465 | MS.gene65265:intron | 25.0% |
| !!! | ATTTATGTGGTTTGTTTTTG+TGG | + | chr4.3:41254879-41254898 | MS.gene65265:intron | 25.0% |
| !!! | ATTTCAGTCATTGATTTATG+TGG | + | chr4.3:41254866-41254885 | MS.gene65265:intron | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | + | chr4.3:41255858-41255877 | MS.gene65265:intron | 25.0% |
| !!! | TTATGATTTGTTTGTGTAGA+TGG | + | chr4.3:41254626-41254645 | MS.gene65265:intron | 25.0% |
| AAATACAACAAATCACTACC+TGG | - | chr4.3:41254819-41254838 | None:intergenic | 30.0% | |
| AAATCAGCATAGCTAATGAT+TGG | - | chr4.3:41254793-41254812 | None:intergenic | 30.0% | |
| AATCAGCATAGCTAATGATT+GGG | - | chr4.3:41254792-41254811 | None:intergenic | 30.0% | |
| AATTAACCACATGTGATAAC+TGG | + | chr4.3:41255464-41255483 | MS.gene65265:intron | 30.0% | |
| CACAAAAAAAAATAGGGCAA+TGG | - | chr4.3:41256229-41256248 | None:intergenic | 30.0% | |
| TATGAGTTGTCAAAAATGAG+AGG | - | chr4.3:41256170-41256189 | None:intergenic | 30.0% | |
| TGGATTTCATACATTTCTGT+TGG | + | chr4.3:41255361-41255380 | MS.gene65265:intron | 30.0% | |
| TTTAAATTATGGCTGCATTG+TGG | + | chr4.3:41255960-41255979 | MS.gene65265:intron | 30.0% | |
| TTTGATTCAAAGACAAAGAC+TGG | + | chr4.3:41254664-41254683 | MS.gene65265:CDS | 30.0% | |
| ! | AGTCCTTATCAATGAGTTTT+TGG | + | chr4.3:41255341-41255360 | MS.gene65265:intron | 30.0% |
| AGTCAATACATACAATGGTG+TGG | - | chr4.3:41255806-41255825 | None:intergenic | 35.0% | |
| ATCAAAAGCTATCTGAGCTT+GGG | + | chr4.3:41256545-41256564 | MS.gene65265:CDS | 35.0% | |
| ATTGCAAATGCGTTTCAAAC+AGG | - | chr4.3:41255247-41255266 | None:intergenic | 35.0% | |
| CAGCATATTTCTCAACAAGT+GGG | - | chr4.3:41256372-41256391 | None:intergenic | 35.0% | |
| CTACAGACAACTTTCAAAAC+AGG | - | chr4.3:41255323-41255342 | None:intergenic | 35.0% | |
| GAAATGATTAGGGAGTTGTT+GGG | + | chr4.3:41256280-41256299 | MS.gene65265:intron | 35.0% | |
| TCTCATTTGTCAATGATTGC+AGG | + | chr4.3:41256486-41256505 | MS.gene65265:intron | 35.0% | |
| TGAAATGATTAGGGAGTTGT+TGG | + | chr4.3:41256279-41256298 | MS.gene65265:intron | 35.0% | |
| TTGCAATGCTATCTACAAGT+TGG | - | chr4.3:41255390-41255409 | None:intergenic | 35.0% | |
| TTTAAACTATGGCTGCATTG+TGG | + | chr4.3:41255896-41255915 | MS.gene65265:intron | 35.0% | |
| !! | GCATTTCTAGTTATCACATG+AGG | - | chr4.3:41255425-41255444 | None:intergenic | 35.0% |
| !! | GCTAATTGGTCCTTTTGTTT+TGG | + | chr4.3:41255557-41255576 | MS.gene65265:intron | 35.0% |
| !! | TGTTTTTGTGGTTATGCAGT+TGG | + | chr4.3:41254891-41254910 | MS.gene65265:intron | 35.0% |
| !!! | TGTTGTGTTTTTTACCACAC+AGG | + | chr4.3:41256669-41256688 | MS.gene65265:intron | 35.0% |
| AAATCCAGAACACTAACCCT+TGG | - | chr4.3:41255638-41255657 | None:intergenic | 40.0% | |
| ATGAGAGGATTAGAAGTCCA+TGG | - | chr4.3:41256155-41256174 | None:intergenic | 40.0% | |
| ATGTGTTTGGCAAAGCTATG+GGG | + | chr4.3:41255745-41255764 | MS.gene65265:CDS | 40.0% | |
| ATTGGGAATTGCTCCTTAAG+AGG | - | chr4.3:41254775-41254794 | None:intergenic | 40.0% | |
| CATATTTCTCAACAAGTGGG+CGG | - | chr4.3:41256369-41256388 | None:intergenic | 40.0% | |
| CATCAAAAGCTATCTGAGCT+TGG | + | chr4.3:41256544-41256563 | MS.gene65265:CDS | 40.0% | |
| GATGTGTTTGGCAAAGCTAT+GGG | + | chr4.3:41255744-41255763 | MS.gene65265:CDS | 40.0% | |
| GATTCAAAGACAAAGACTGG+TGG | + | chr4.3:41254667-41254686 | MS.gene65265:CDS | 40.0% | |
| GCAGCATATTTCTCAACAAG+TGG | - | chr4.3:41256373-41256392 | None:intergenic | 40.0% | |
| GCATTTCCAGTTATCACATG+TGG | - | chr4.3:41255473-41255492 | None:intergenic | 40.0% | |
| TAAGTTCCGCATTATCCACT+GGG | + | chr4.3:41256636-41256655 | MS.gene65265:intron | 40.0% | |
| TATCACTTGGCAACTGAAGA+AGG | - | chr4.3:41256321-41256340 | None:intergenic | 40.0% | |
| TCTAGTTATCACATGAGGAC+AGG | - | chr4.3:41255420-41255439 | None:intergenic | 40.0% | |
| TCTTCAGTTGCCAAGTGATA+AGG | + | chr4.3:41256321-41256340 | MS.gene65265:CDS | 40.0% | |
| TGAGAGGATTAGAAGTCCAT+GGG | - | chr4.3:41256154-41256173 | None:intergenic | 40.0% | |
| TTAAGTTCCGCATTATCCAC+TGG | + | chr4.3:41256635-41256654 | MS.gene65265:intron | 40.0% | |
| TTACCAAAAGGCTGTTGAGA+AGG | + | chr4.3:41254147-41254166 | MS.gene65265:CDS | 40.0% | |
| ! | AGATAGCTTTTGATGAGCCT+CGG | - | chr4.3:41256539-41256558 | None:intergenic | 40.0% |
| ! | CGTTGAGATTGTGACTGTTT+TGG | + | chr4.3:41256071-41256090 | MS.gene65265:intron | 40.0% |
| ! | GTTGTTGCTGTTGAGATTAC+TGG | + | chr4.3:41254919-41254938 | MS.gene65265:CDS | 40.0% |
| ! | TGATATCGCTGTTAGGCTTT+TGG | + | chr4.3:41254747-41254766 | MS.gene65265:CDS | 40.0% |
| ! | TTTCTTTGCTGATTATGCCG+AGG | + | chr4.3:41256519-41256538 | MS.gene65265:CDS | 40.0% |
| !! | CTCAAAAGTGCCTTATCACT+TGG | - | chr4.3:41256334-41256353 | None:intergenic | 40.0% |
| !! | CTTTTGGTAATCAGCACTCA+CGG | - | chr4.3:41254137-41254156 | None:intergenic | 40.0% |
| !! | GGAGGTACGTTTACTACTTT+TGG | + | chr4.3:41254972-41254991 | MS.gene65265:intron | 40.0% |
| !! | TAGCTATGCTGATTTCTACC+AGG | + | chr4.3:41254798-41254817 | MS.gene65265:CDS | 40.0% |
| ACAAAGACTGGTGGTCCTTT+CGG | + | chr4.3:41254676-41254695 | MS.gene65265:CDS | 45.0% | |
| ACGGTCTTGATATCGCTGTT+AGG | + | chr4.3:41254740-41254759 | MS.gene65265:CDS | 45.0% | |
| ATGATTAGGGAGTTGTTGGG+TGG | + | chr4.3:41256283-41256302 | MS.gene65265:intron | 45.0% | |
| CAACATGAATCAACTCCCAG+TGG | - | chr4.3:41256654-41256673 | None:intergenic | 45.0% | |
| GACCATTTGAGGGATGTGTT+TGG | + | chr4.3:41255732-41255751 | MS.gene65265:CDS | 45.0% | |
| GGATGTGTTTGGCAAAGCTA+TGG | + | chr4.3:41255743-41255762 | MS.gene65265:CDS | 45.0% | |
| TAGTAAACGTACCTCCCTAC+CGG | - | chr4.3:41254968-41254987 | None:intergenic | 45.0% | |
| TCAACTCCCAGTGGATAATG+CGG | - | chr4.3:41256645-41256664 | None:intergenic | 45.0% | |
| TGCCAAACACATCCCTCAAA+TGG | - | chr4.3:41255737-41255756 | None:intergenic | 45.0% | |
| TGTCTTGCAGTTCACGTTCT+TGG | + | chr4.3:41255283-41255302 | MS.gene65265:intron | 45.0% | |
| TTTGTGGTTATGCAGTTGGC+TGG | + | chr4.3:41254895-41254914 | MS.gene65265:intron | 45.0% | |
| ! | CTTGCTCATGGTGCTAACAA+CGG | + | chr4.3:41254721-41254740 | MS.gene65265:CDS | 45.0% |
| ! | GTTGCTGTTGAGATTACTGG+TGG | + | chr4.3:41254922-41254941 | MS.gene65265:CDS | 45.0% |
| ! | TGCAGGTTCTGACCATTTGA+GGG | + | chr4.3:41255722-41255741 | MS.gene65265:intron | 45.0% |
| ! | TTGCAGGTTCTGACCATTTG+AGG | + | chr4.3:41255721-41255740 | MS.gene65265:intron | 45.0% |
| !! | AAGGAGCGTTCTGGATTTGA+GGG | + | chr4.3:41256128-41256147 | MS.gene65265:CDS | 45.0% |
| !! | CGTGAGTGCTGATTACCAAA+AGG | + | chr4.3:41254135-41254154 | MS.gene65265:CDS | 45.0% |
| !!! | TAGGCTTTTGGAGCCTCTTA+AGG | + | chr4.3:41254759-41254778 | MS.gene65265:CDS | 45.0% |
| AGTAAACGTACCTCCCTACC+GGG | - | chr4.3:41254967-41254986 | None:intergenic | 50.0% | |
| CAACAAGTGGGCGGAATACA+GGG | - | chr4.3:41256360-41256379 | None:intergenic | 50.0% | |
| CAGACAGAGCAACAATGTCC+TGG | - | chr4.3:41255779-41255798 | None:intergenic | 50.0% | |
| CAGGACATTGTTGCTCTGTC+TGG | + | chr4.3:41255777-41255796 | MS.gene65265:CDS | 50.0% | |
| GACATTGTTGCTCTGTCTGG+TGG | + | chr4.3:41255780-41255799 | MS.gene65265:CDS | 50.0% | |
| GGTAATCAGCACTCACGGTT+GGG | - | chr4.3:41254132-41254151 | None:intergenic | 50.0% | |
| TACGCCAAACGGAGCATAAG+AGG | - | chr4.3:41254217-41254236 | None:intergenic | 50.0% | |
| TAGGCTTCTGCAAACCTGTG+TGG | - | chr4.3:41256686-41256705 | None:intergenic | 50.0% | |
| TCAACAAGTGGGCGGAATAC+AGG | - | chr4.3:41256361-41256380 | None:intergenic | 50.0% | |
| TCCAGAACACTAACCCTTGG+TGG | - | chr4.3:41255635-41255654 | None:intergenic | 50.0% | |
| TGGTAATCAGCACTCACGGT+TGG | - | chr4.3:41254133-41254152 | None:intergenic | 50.0% | |
| TTGTGTAGATGGCACTCTGC+TGG | + | chr4.3:41254637-41254656 | MS.gene65265:intron | 50.0% | |
| TTGTTGGGTGGTGAGAAGGA+AGG | + | chr4.3:41256295-41256314 | MS.gene65265:CDS | 50.0% | |
| ! | TCGCCTTCTCAACAGCCTTT+TGG | - | chr4.3:41254153-41254172 | None:intergenic | 50.0% |
| ! | TGGTGCTTGATGGTTCCGAA+AGG | - | chr4.3:41254694-41254713 | None:intergenic | 50.0% |
| !! | AAGCTCAGCTTGGTGCTTGA+TGG | - | chr4.3:41254704-41254723 | None:intergenic | 50.0% |
| !! | CAAGGAGCGTTCTGGATTTG+AGG | + | chr4.3:41256127-41256146 | MS.gene65265:CDS | 50.0% |
| AAGGCGAAGAGGAAGCTCAG+AGG | + | chr4.3:41254166-41254185 | MS.gene65265:CDS | 55.0% | |
| AAGTTCCTTTCCACCCCGGT+AGG | + | chr4.3:41254950-41254969 | MS.gene65265:CDS | 55.0% | |
| AGCTATGGGGCTTAGTGACC+AGG | + | chr4.3:41255758-41255777 | MS.gene65265:CDS | 55.0% | |
| AGGCTGTTGAGAAGGCGAAG+AGG | + | chr4.3:41254155-41254174 | MS.gene65265:CDS | 55.0% | |
| AGTTCCTTTCCACCCCGGTA+GGG | + | chr4.3:41254951-41254970 | MS.gene65265:CDS | 55.0% | |
| CACCATGAGCAAGCTCAGCT+TGG | - | chr4.3:41254714-41254733 | None:intergenic | 55.0% | |
| CCTGAAGTTCCTTTCCACCC+CGG | + | chr4.3:41254946-41254965 | MS.gene65265:CDS | 55.0% | |
| CGCTCCTCTTATGCTCCGTT+TGG | + | chr4.3:41254210-41254229 | MS.gene65265:CDS | 55.0% | |
| GGAGTTGTTGGGTGGTGAGA+AGG | + | chr4.3:41256291-41256310 | MS.gene65265:CDS | 55.0% | |
| GTAAACGTACCTCCCTACCG+GGG | - | chr4.3:41254966-41254985 | None:intergenic | 55.0% | |
| TTGGTAGGGAGCTGCACACA+AGG | + | chr4.3:41256109-41256128 | MS.gene65265:intron | 55.0% | |
| ! | CACCAAGCTGAGCTTGCTCA+TGG | + | chr4.3:41254709-41254728 | MS.gene65265:CDS | 55.0% |
| ! | CACTAACCCTTGGTGGCATC+AGG | - | chr4.3:41255628-41255647 | None:intergenic | 55.0% |
| ! | GCCACCAAGGGTTAGTGTTC+TGG | + | chr4.3:41255631-41255650 | MS.gene65265:intron | 55.0% |
| ! | GTTCTGGATTTGAGGGCCCA+TGG | + | chr4.3:41256135-41256154 | MS.gene65265:CDS | 55.0% |
| AAGCCTGAGCCACCACCAGA+GGG | + | chr4.3:41255595-41255614 | MS.gene65265:CDS | 60.0% | |
| CCGGGGTGGAAAGGAACTTC+AGG | - | chr4.3:41254949-41254968 | None:intergenic | 60.0% | |
| CGCTTGCCTGATGCCACCAA+GGG | + | chr4.3:41255619-41255638 | MS.gene65265:CDS | 60.0% | |
| TCGCTTGCCTGATGCCACCA+AGG | + | chr4.3:41255618-41255637 | MS.gene65265:CDS | 60.0% | |
| !! | GCTGCACACAAGGAGCGTTC+TGG | + | chr4.3:41256119-41256138 | MS.gene65265:CDS | 60.0% |
| AACGTACCTCCCTACCGGGG+TGG | - | chr4.3:41254963-41254982 | None:intergenic | 65.0% | |
| ACCTCCCTACCGGGGTGGAA+AGG | - | chr4.3:41254958-41254977 | None:intergenic | 65.0% | |
| CAAGCCTGAGCCACCACCAG+AGG | + | chr4.3:41255594-41255613 | MS.gene65265:CDS | 65.0% | |
| GCATCAGGCAAGCGACCCTC+TGG | - | chr4.3:41255613-41255632 | None:intergenic | 65.0% | |
| TCAGGCAAGCGACCCTCTGG+TGG | - | chr4.3:41255610-41255629 | None:intergenic | 65.0% | |
| TCCTTTCCACCCCGGTAGGG+AGG | + | chr4.3:41254954-41254973 | MS.gene65265:CDS | 65.0% | |
| GGCAAGCGACCCTCTGGTGG+TGG | - | chr4.3:41255607-41255626 | None:intergenic | 70.0% | |
| !! | CGACCCTCTGGTGGTGGCTC+AGG | - | chr4.3:41255601-41255620 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 41254115 | 41256706 | 41254115 | ID=MS.gene65265 |
| chr4.3 | mRNA | 41254115 | 41256706 | 41254115 | ID=MS.gene65265.t1;Parent=MS.gene65265 |
| chr4.3 | exon | 41254115 | 41254233 | 41254115 | ID=MS.gene65265.t1.exon1;Parent=MS.gene65265.t1 |
| chr4.3 | CDS | 41254115 | 41254233 | 41254115 | ID=cds.MS.gene65265.t1;Parent=MS.gene65265.t1 |
| chr4.3 | exon | 41254645 | 41254819 | 41254645 | ID=MS.gene65265.t1.exon2;Parent=MS.gene65265.t1 |
| chr4.3 | CDS | 41254645 | 41254819 | 41254645 | ID=cds.MS.gene65265.t1;Parent=MS.gene65265.t1 |
| chr4.3 | exon | 41254910 | 41254975 | 41254910 | ID=MS.gene65265.t1.exon3;Parent=MS.gene65265.t1 |
| chr4.3 | CDS | 41254910 | 41254975 | 41254910 | ID=cds.MS.gene65265.t1;Parent=MS.gene65265.t1 |
| chr4.3 | exon | 41255592 | 41255640 | 41255592 | ID=MS.gene65265.t1.exon4;Parent=MS.gene65265.t1 |
| chr4.3 | CDS | 41255592 | 41255640 | 41255592 | ID=cds.MS.gene65265.t1;Parent=MS.gene65265.t1 |
| chr4.3 | exon | 41255727 | 41255812 | 41255727 | ID=MS.gene65265.t1.exon5;Parent=MS.gene65265.t1 |
| chr4.3 | CDS | 41255727 | 41255812 | 41255727 | ID=cds.MS.gene65265.t1;Parent=MS.gene65265.t1 |
| chr4.3 | exon | 41256116 | 41256195 | 41256116 | ID=MS.gene65265.t1.exon6;Parent=MS.gene65265.t1 |
| chr4.3 | CDS | 41256116 | 41256195 | 41256116 | ID=cds.MS.gene65265.t1;Parent=MS.gene65265.t1 |
| chr4.3 | exon | 41256291 | 41256393 | 41256291 | ID=MS.gene65265.t1.exon7;Parent=MS.gene65265.t1 |
| chr4.3 | CDS | 41256291 | 41256393 | 41256291 | ID=cds.MS.gene65265.t1;Parent=MS.gene65265.t1 |
| chr4.3 | exon | 41256508 | 41256566 | 41256508 | ID=MS.gene65265.t1.exon8;Parent=MS.gene65265.t1 |
| chr4.3 | CDS | 41256508 | 41256566 | 41256508 | ID=cds.MS.gene65265.t1;Parent=MS.gene65265.t1 |
| chr4.3 | exon | 41256691 | 41256706 | 41256691 | ID=MS.gene65265.t1.exon9;Parent=MS.gene65265.t1 |
| chr4.3 | CDS | 41256691 | 41256706 | 41256691 | ID=cds.MS.gene65265.t1;Parent=MS.gene65265.t1 |
| Gene Sequence |
| Protein sequence |
