Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65360.t1 | XP_003614560.1 | 97.7 | 391 | 8 | 1 | 1 | 391 | 1 | 390 | 1.30E-222 | 781.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65360.t1 | Q65XS5 | 35.4 | 297 | 141 | 9 | 124 | 373 | 85 | 377 | 7.6e-41 | 169.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65360.t1 | G7JZH3 | 97.7 | 391 | 8 | 1 | 1 | 391 | 1 | 390 | 9.7e-223 | 781.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene00579 | MS.gene65360 | PPI |
MS.gene047241 | MS.gene65360 | PPI |
MS.gene002006 | MS.gene65360 | PPI |
MS.gene072101 | MS.gene65360 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65360.t1 | MTR_5g055480 | 97.698 | 391 | 8 | 1 | 1 | 391 | 1 | 390 | 0.0 | 791 |
MS.gene65360.t1 | MTR_1g110290 | 68.367 | 392 | 120 | 3 | 1 | 391 | 5 | 393 | 0.0 | 557 |
MS.gene65360.t1 | MTR_6g083830 | 54.436 | 417 | 164 | 5 | 1 | 391 | 3 | 419 | 4.67e-162 | 461 |
MS.gene65360.t1 | MTR_5g006920 | 50.355 | 423 | 176 | 4 | 1 | 391 | 1 | 421 | 5.31e-151 | 433 |
MS.gene65360.t1 | MTR_5g006930 | 53.046 | 394 | 174 | 4 | 1 | 391 | 1 | 386 | 7.62e-147 | 421 |
MS.gene65360.t1 | MTR_3g104840 | 48.780 | 410 | 172 | 8 | 1 | 391 | 3 | 393 | 5.09e-134 | 389 |
MS.gene65360.t1 | MTR_1g016880 | 50.145 | 345 | 164 | 3 | 40 | 382 | 28 | 366 | 3.52e-127 | 371 |
MS.gene65360.t1 | MTR_2g005350 | 53.595 | 306 | 140 | 1 | 86 | 389 | 131 | 436 | 8.00e-124 | 365 |
MS.gene65360.t1 | MTR_8g015500 | 52.787 | 305 | 142 | 2 | 89 | 391 | 109 | 413 | 1.08e-117 | 348 |
MS.gene65360.t1 | MTR_3g108740 | 41.390 | 331 | 156 | 8 | 82 | 382 | 49 | 371 | 2.45e-73 | 233 |
MS.gene65360.t1 | MTR_1g009960 | 40.063 | 317 | 163 | 5 | 92 | 384 | 79 | 392 | 1.30e-70 | 227 |
MS.gene65360.t1 | MTR_4g127550 | 39.339 | 333 | 164 | 7 | 82 | 384 | 63 | 387 | 8.34e-70 | 225 |
MS.gene65360.t1 | MTR_2g037600 | 42.105 | 285 | 139 | 5 | 123 | 384 | 105 | 386 | 4.31e-65 | 213 |
MS.gene65360.t1 | MTR_2g037620 | 39.446 | 289 | 140 | 5 | 123 | 384 | 97 | 377 | 4.82e-65 | 212 |
MS.gene65360.t1 | MTR_1g009960 | 41.573 | 267 | 147 | 3 | 92 | 351 | 79 | 343 | 7.94e-64 | 209 |
MS.gene65360.t1 | MTR_2g024120 | 36.909 | 317 | 155 | 9 | 108 | 382 | 46 | 359 | 2.72e-53 | 181 |
MS.gene65360.t1 | MTR_8g094180 | 36.246 | 309 | 144 | 9 | 123 | 382 | 55 | 359 | 3.02e-53 | 181 |
MS.gene65360.t1 | MTR_8g094180 | 37.218 | 266 | 132 | 6 | 123 | 356 | 55 | 317 | 5.97e-50 | 171 |
MS.gene65360.t1 | MTR_3g106930 | 34.969 | 326 | 192 | 9 | 78 | 389 | 55 | 374 | 3.79e-44 | 157 |
MS.gene65360.t1 | MTR_1g048320 | 38.889 | 288 | 145 | 10 | 123 | 389 | 64 | 341 | 1.82e-38 | 141 |
MS.gene65360.t1 | MTR_2g087610 | 34.783 | 299 | 151 | 11 | 124 | 389 | 78 | 365 | 2.21e-37 | 139 |
MS.gene65360.t1 | MTR_1g031060 | 37.931 | 290 | 147 | 9 | 123 | 389 | 80 | 359 | 2.24e-37 | 139 |
MS.gene65360.t1 | MTR_1g031080 | 35.484 | 248 | 130 | 8 | 165 | 389 | 49 | 289 | 4.20e-30 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65360.t1 | AT1G68390 | 64.309 | 311 | 107 | 3 | 85 | 391 | 98 | 408 | 4.73e-154 | 441 |
MS.gene65360.t1 | AT1G10280 | 47.475 | 396 | 179 | 7 | 22 | 389 | 16 | 410 | 4.22e-128 | 375 |
MS.gene65360.t1 | AT5G11730 | 54.167 | 312 | 141 | 2 | 80 | 389 | 73 | 384 | 4.14e-127 | 371 |
MS.gene65360.t1 | AT1G73810 | 49.024 | 410 | 183 | 7 | 1 | 389 | 12 | 416 | 3.17e-126 | 370 |
MS.gene65360.t1 | AT1G51770 | 52.353 | 340 | 159 | 3 | 54 | 391 | 54 | 392 | 1.21e-125 | 368 |
MS.gene65360.t1 | AT1G68380 | 50.815 | 368 | 167 | 7 | 30 | 390 | 31 | 391 | 3.08e-124 | 364 |
MS.gene65360.t1 | AT5G25970 | 51.572 | 318 | 149 | 3 | 77 | 389 | 68 | 385 | 4.48e-120 | 353 |
MS.gene65360.t1 | AT5G25970 | 51.572 | 318 | 149 | 3 | 77 | 389 | 68 | 385 | 4.48e-120 | 353 |
MS.gene65360.t1 | AT5G25970 | 51.572 | 318 | 149 | 3 | 77 | 389 | 68 | 385 | 4.48e-120 | 353 |
MS.gene65360.t1 | AT3G21310 | 48.225 | 338 | 168 | 3 | 54 | 389 | 49 | 381 | 5.43e-118 | 348 |
MS.gene65360.t1 | AT3G21310 | 48.225 | 338 | 168 | 3 | 54 | 389 | 49 | 381 | 5.43e-118 | 348 |
MS.gene65360.t1 | AT1G10880 | 52.759 | 290 | 135 | 2 | 98 | 386 | 93 | 381 | 1.89e-114 | 339 |
MS.gene65360.t1 | AT1G51770 | 47.647 | 340 | 148 | 4 | 54 | 391 | 54 | 365 | 1.82e-108 | 323 |
MS.gene65360.t1 | AT5G16170 | 42.971 | 377 | 190 | 4 | 32 | 389 | 37 | 407 | 2.05e-108 | 325 |
MS.gene65360.t1 | AT4G30060 | 39.329 | 328 | 160 | 7 | 84 | 382 | 70 | 387 | 2.32e-68 | 221 |
MS.gene65360.t1 | AT4G30060 | 39.329 | 328 | 160 | 7 | 84 | 382 | 70 | 387 | 2.32e-68 | 221 |
MS.gene65360.t1 | AT2G19160 | 38.066 | 331 | 168 | 7 | 84 | 386 | 67 | 388 | 7.72e-68 | 220 |
MS.gene65360.t1 | AT2G19160 | 38.066 | 331 | 168 | 7 | 84 | 386 | 67 | 388 | 7.72e-68 | 220 |
MS.gene65360.t1 | AT4G25870 | 39.521 | 334 | 172 | 7 | 78 | 386 | 54 | 382 | 9.60e-68 | 219 |
MS.gene65360.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.33e-67 | 219 |
MS.gene65360.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.33e-67 | 219 |
MS.gene65360.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.33e-67 | 219 |
MS.gene65360.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 8.18e-64 | 209 |
MS.gene65360.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 8.18e-64 | 209 |
MS.gene65360.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 8.18e-64 | 209 |
MS.gene65360.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 8.18e-64 | 209 |
MS.gene65360.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 8.18e-64 | 209 |
MS.gene65360.t1 | AT3G21310 | 48.558 | 208 | 101 | 2 | 53 | 259 | 48 | 250 | 4.19e-63 | 203 |
MS.gene65360.t1 | AT4G31350 | 40.000 | 290 | 146 | 5 | 123 | 391 | 88 | 370 | 1.89e-62 | 205 |
MS.gene65360.t1 | AT5G14550 | 36.246 | 309 | 149 | 8 | 119 | 383 | 60 | 364 | 2.69e-54 | 184 |
MS.gene65360.t1 | AT5G14550 | 36.364 | 308 | 148 | 8 | 120 | 383 | 61 | 364 | 2.80e-54 | 184 |
MS.gene65360.t1 | AT5G14550 | 37.884 | 293 | 142 | 9 | 120 | 381 | 61 | 344 | 1.22e-53 | 181 |
MS.gene65360.t1 | AT1G11940 | 36.076 | 316 | 154 | 11 | 109 | 382 | 61 | 370 | 1.61e-51 | 177 |
MS.gene65360.t1 | AT1G62305 | 36.246 | 309 | 149 | 10 | 116 | 382 | 62 | 364 | 1.75e-51 | 177 |
MS.gene65360.t1 | AT5G25330 | 34.574 | 376 | 209 | 14 | 30 | 389 | 5 | 359 | 9.10e-49 | 169 |
MS.gene65360.t1 | AT5G14550 | 38.062 | 289 | 142 | 10 | 120 | 383 | 61 | 337 | 6.84e-48 | 166 |
MS.gene65360.t1 | AT3G52060 | 35.740 | 277 | 161 | 8 | 123 | 389 | 74 | 343 | 8.24e-48 | 166 |
MS.gene65360.t1 | AT1G62305 | 42.466 | 219 | 99 | 6 | 116 | 312 | 62 | 275 | 1.23e-46 | 162 |
MS.gene65360.t1 | AT1G11940 | 45.833 | 192 | 95 | 6 | 109 | 296 | 61 | 247 | 2.27e-45 | 157 |
MS.gene65360.t1 | AT1G62305 | 33.010 | 309 | 135 | 10 | 116 | 382 | 62 | 340 | 2.92e-38 | 141 |
MS.gene65360.t1 | AT5G22070 | 34.667 | 300 | 151 | 12 | 124 | 389 | 71 | 359 | 4.22e-37 | 138 |
MS.gene65360.t1 | AT4G32290 | 35.417 | 288 | 160 | 7 | 124 | 389 | 93 | 376 | 1.51e-34 | 132 |
Find 75 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGGTCTCACATATTTAAC+TGG | 0.301424 | 5.1:+43506043 | None:intergenic |
GTTTGCTAGCAGGCGACGTT+CGG | 0.332144 | 5.1:+43506471 | None:intergenic |
GGTTAGAGGTCCTGTGCCTT+TGG | 0.333074 | 5.1:-43508164 | MS.gene65360:CDS |
AAAGGATATTCATCTATCTT+AGG | 0.344852 | 5.1:+43508220 | None:intergenic |
AATCAAACATGTAAGTATAA+TGG | 0.347050 | 5.1:-43505989 | MS.gene65360:CDS |
AAGTTCTTCAAAGGGCATAA+AGG | 0.385070 | 5.1:-43508127 | MS.gene65360:CDS |
AGGCTGGAATCGAATACTAT+TGG | 0.391723 | 5.1:+43508340 | None:intergenic |
GTTTATAAGTGCATGACCTT+TGG | 0.392410 | 5.1:+43505890 | None:intergenic |
ATGTTTGTTATTTGTTTGCT+AGG | 0.408942 | 5.1:-43505955 | MS.gene65360:CDS |
AAACTCAGACAATGGAGAAA+AGG | 0.424464 | 5.1:-43506268 | MS.gene65360:CDS |
AGGGTCACAATGGTTTGAAA+TGG | 0.427955 | 5.1:-43506248 | MS.gene65360:CDS |
CGAGAAGCGCGTTTGCTAGC+AGG | 0.432228 | 5.1:+43506461 | None:intergenic |
AGTTCTTCAAAGGGCATAAA+GGG | 0.434327 | 5.1:-43508126 | MS.gene65360:CDS |
GAAGTTTGACTTGGGTTGAC+TGG | 0.435516 | 5.1:-43506084 | MS.gene65360:CDS |
TATAATGCAGAAAGTAGAAT+GGG | 0.436466 | 5.1:-43506515 | MS.gene65360:intron |
AACTTAATGCTAACAAAAGT+TGG | 0.443687 | 5.1:+43506127 | None:intergenic |
TGAAAACCGGGTAATATGTT+CGG | 0.445181 | 5.1:+43506194 | None:intergenic |
AACTCAGACAATGGAGAAAA+GGG | 0.454574 | 5.1:-43506267 | MS.gene65360:CDS |
CGCGTCCAACTGAACTTGCC+TGG | 0.457072 | 5.1:+43506323 | None:intergenic |
GTGTGATACCACATGCTAGA+AGG | 0.467681 | 5.1:+43508458 | None:intergenic |
GCTCATGAGGTTTGCTCCAA+AGG | 0.468695 | 5.1:-43505906 | MS.gene65360:CDS |
ACTTGGGTTGACTGGTCAAA+GGG | 0.471540 | 5.1:-43506076 | MS.gene65360:CDS |
TGAGTGATGAAGAATTGTTA+TGG | 0.473976 | 5.1:-43508258 | MS.gene65360:CDS |
ATTGTCTGAGTTTGATCGTA+GGG | 0.474052 | 5.1:+43506278 | None:intergenic |
TGTGCCTTTGGCTCCTCTGT+GGG | 0.475956 | 5.1:-43508152 | MS.gene65360:CDS |
CTGATATGAGAACGAATCGT+TGG | 0.478739 | 5.1:+43506428 | None:intergenic |
GTGGAGAGTCCTGTGTTTCA+TGG | 0.489177 | 5.1:-43508055 | MS.gene65360:CDS |
AATACTATTGGTTGGCGTAA+CGG | 0.490927 | 5.1:+43508352 | None:intergenic |
GACTTGGGTTGACTGGTCAA+AGG | 0.498955 | 5.1:-43506077 | MS.gene65360:CDS |
ACTTCAGAACCATTGTAAGA+TGG | 0.502479 | 5.1:+43508076 | None:intergenic |
CTAGCATGTGGTATCACACT+TGG | 0.505414 | 5.1:-43508454 | MS.gene65360:CDS |
CTCACATATTTAACTGGGTG+TGG | 0.508350 | 5.1:+43506049 | None:intergenic |
AGCCTCAATGGTAGTCATGA+AGG | 0.515851 | 5.1:-43508322 | MS.gene65360:CDS |
CTGTGGGAGAAGTTCTTCAA+AGG | 0.518666 | 5.1:-43508136 | MS.gene65360:CDS |
TACAAATAGAAGTTTGACTT+GGG | 0.522087 | 5.1:-43506092 | MS.gene65360:CDS |
ATATAATGCAGAAAGTAGAA+TGG | 0.524034 | 5.1:-43506516 | MS.gene65360:intron |
CTACGTCATGGCTTACGACC+AGG | 0.528541 | 5.1:-43506341 | MS.gene65360:CDS |
TACGACCAGGCAAGTTCAGT+TGG | 0.529529 | 5.1:-43506328 | MS.gene65360:CDS |
TACCTTCTCCTTCTAGCATG+TGG | 0.532227 | 5.1:-43508466 | MS.gene65360:CDS |
TTCATGACTACCATTGAGGC+TGG | 0.539090 | 5.1:+43508324 | None:intergenic |
CTGTGCCTTTGGCTCCTCTG+TGG | 0.539356 | 5.1:-43508153 | MS.gene65360:CDS |
ATGAGCCTTGACAATGAAGT+AGG | 0.542080 | 5.1:+43505923 | None:intergenic |
GTATTCGATTCCAGCCTCAA+TGG | 0.543962 | 5.1:-43508334 | MS.gene65360:CDS |
CACAGAGGAGCCAAAGGCAC+AGG | 0.545018 | 5.1:+43508154 | None:intergenic |
TGGTAGGAGAATTCCCAGTA+AGG | 0.545755 | 5.1:-43508035 | MS.gene65360:intron |
TCTTGCCTACTTCATTGTCA+AGG | 0.554046 | 5.1:-43505928 | MS.gene65360:CDS |
ATACAAATAGAAGTTTGACT+TGG | 0.556289 | 5.1:-43506093 | MS.gene65360:CDS |
TCCTTTCGATCGAGTTCCGA+AGG | 0.557813 | 5.1:-43508203 | MS.gene65360:CDS |
ATCCTTCATGACTACCATTG+AGG | 0.559449 | 5.1:+43508320 | None:intergenic |
ATCTTACAATGGTTCTGAAG+TGG | 0.559601 | 5.1:-43508074 | MS.gene65360:CDS |
TGTGGGAGAAGTTCTTCAAA+GGG | 0.570757 | 5.1:-43508135 | MS.gene65360:CDS |
CTACGATCAAACTCAGACAA+TGG | 0.571848 | 5.1:-43506276 | MS.gene65360:CDS |
TTCTCCCACAGAGGAGCCAA+AGG | 0.571960 | 5.1:+43508148 | None:intergenic |
CTTCATTGTCAAGGCTCATG+AGG | 0.577302 | 5.1:-43505919 | MS.gene65360:CDS |
TGGAATCGAATACTATTGGT+TGG | 0.581530 | 5.1:+43508344 | None:intergenic |
AAATCATGTACAACTTGAGA+TGG | 0.582062 | 5.1:+43508280 | None:intergenic |
CTGGTCTCACATATTTAACT+GGG | 0.587265 | 5.1:+43506044 | None:intergenic |
CATTGTCTGAGTTTGATCGT+AGG | 0.589831 | 5.1:+43506277 | None:intergenic |
ACCTTCGGAACTCGATCGAA+AGG | 0.595763 | 5.1:+43508202 | None:intergenic |
AGAGTCCTGTGTTTCATGGT+AGG | 0.601294 | 5.1:-43508051 | MS.gene65360:CDS |
ACTGTTGAGAAGTTGAAGAG+TGG | 0.604831 | 5.1:+43506394 | None:intergenic |
CAAGTTCAGTTGGACGCGGA+CGG | 0.618278 | 5.1:-43506318 | MS.gene65360:CDS |
CTAGAAGGAGAAGGTAAGTG+AGG | 0.623171 | 5.1:+43508473 | None:intergenic |
ATCAGACCGAACATATTACC+CGG | 0.623786 | 5.1:-43506200 | MS.gene65360:CDS |
TTTCGATCGAGTTCCGAAGG+TGG | 0.623922 | 5.1:-43508200 | MS.gene65360:CDS |
CACTCGAATCCATCTTACAA+TGG | 0.632327 | 5.1:-43508085 | MS.gene65360:CDS |
CAGGCAAGTTCAGTTGGACG+CGG | 0.637111 | 5.1:-43506322 | MS.gene65360:CDS |
TGGGTTGACTGGTCAAAGGG+TGG | 0.638199 | 5.1:-43506073 | MS.gene65360:CDS |
AATGGAGAAAAGGGTCACAA+TGG | 0.647572 | 5.1:-43506258 | MS.gene65360:CDS |
TACCACATGCTAGAAGGAGA+AGG | 0.656558 | 5.1:+43508464 | None:intergenic |
ATTCTCCTACCATGAAACAC+AGG | 0.661769 | 5.1:+43508046 | None:intergenic |
ATAATGCAGAAAGTAGAATG+GGG | 0.668247 | 5.1:-43506514 | MS.gene65360:intron |
TTGTCTGAGTTTGATCGTAG+GGG | 0.668407 | 5.1:+43506279 | None:intergenic |
TTGAAGAACTTCTCCCACAG+AGG | 0.672369 | 5.1:+43508139 | None:intergenic |
AGTTAAATATGTGAGACCAG+AGG | 0.732458 | 5.1:-43506041 | MS.gene65360:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATAATTGAAAGAATAA+AGG | - | chr5.1:43507313-43507332 | MS.gene65360:intron | 10.0% |
!! | AATGTGTAAAAATAACTAAA+TGG | - | chr5.1:43507670-43507689 | MS.gene65360:intron | 15.0% |
!!! | AGATATAAAAAACTTTTTTG+AGG | - | chr5.1:43506978-43506997 | MS.gene65360:intron | 15.0% |
!!! | ATATAAAAAACTTTTTTGAG+GGG | - | chr5.1:43506980-43506999 | MS.gene65360:intron | 15.0% |
!!! | GAATTTTTTTTATCTTGATA+TGG | - | chr5.1:43506438-43506457 | MS.gene65360:CDS | 15.0% |
!!! | GATATAAAAAACTTTTTTGA+GGG | - | chr5.1:43506979-43506998 | MS.gene65360:intron | 15.0% |
!!! | GTTTTTTATATCTTTTCTTT+TGG | + | chr5.1:43506971-43506990 | None:intergenic | 15.0% |
!!! | TGTTTCAAATCTTAATTTTT+AGG | - | chr5.1:43507838-43507857 | MS.gene65360:intron | 15.0% |
!! | AAAAAATATTGAATGTAACC+AGG | - | chr5.1:43506793-43506812 | MS.gene65360:intron | 20.0% |
!! | AAATTGAATTAAGAGGAAAA+GGG | - | chr5.1:43506710-43506729 | MS.gene65360:intron | 20.0% |
!! | AACACTAGAATTTCATTAAT+AGG | + | chr5.1:43507599-43507618 | None:intergenic | 20.0% |
!! | AAGTATACAATAAACCATAA+AGG | + | chr5.1:43507819-43507838 | None:intergenic | 20.0% |
!! | AATCAAACATGTAAGTATAA+TGG | - | chr5.1:43508456-43508475 | MS.gene65360:CDS | 20.0% |
!! | ATCAAAGAACAAATAAAGTA+AGG | - | chr5.1:43506520-43506539 | MS.gene65360:intron | 20.0% |
!! | ATTGAAAGCTTAATTCAAAA+TGG | + | chr5.1:43507717-43507736 | None:intergenic | 20.0% |
!! | CAAAAAAAAATATGAAGTGT+CGG | - | chr5.1:43506863-43506882 | MS.gene65360:intron | 20.0% |
!! | GAGAAAATTAATTTCCTTTA+TGG | - | chr5.1:43507802-43507821 | MS.gene65360:intron | 20.0% |
!! | TAAATTGAATTAAGAGGAAA+AGG | - | chr5.1:43506709-43506728 | MS.gene65360:intron | 20.0% |
!! | TCAAAGAACAAATAAAGTAA+GGG | - | chr5.1:43506521-43506540 | MS.gene65360:intron | 20.0% |
!! | TTATGAATGAAAATTGTCAT+TGG | - | chr5.1:43506466-43506485 | MS.gene65360:CDS | 20.0% |
!!! | AAACCATGTATAAATCTTTT+AGG | + | chr5.1:43507363-43507382 | None:intergenic | 20.0% |
!!! | AATTGTTTGATTTGAAAACA+TGG | + | chr5.1:43506581-43506600 | None:intergenic | 20.0% |
!!! | GTATACACATGTTTTAAATA+TGG | - | chr5.1:43506633-43506652 | MS.gene65360:intron | 20.0% |
!!! | TACATTTTGAAACAAATTGA+TGG | + | chr5.1:43507891-43507910 | None:intergenic | 20.0% |
!!! | TATAAAAAACTTTTTTGAGG+GGG | - | chr5.1:43506981-43507000 | MS.gene65360:intron | 20.0% |
! | AAAAAATTCACTAACCTTAC+TGG | + | chr5.1:43506427-43506446 | None:intergenic | 25.0% |
! | AAAAATTCACTAACCTTACT+GGG | + | chr5.1:43506426-43506445 | None:intergenic | 25.0% |
! | AAAGGATATTCATCTATCTT+AGG | + | chr5.1:43506228-43506247 | None:intergenic | 25.0% |
! | AACTTAATGCTAACAAAAGT+TGG | + | chr5.1:43508321-43508340 | None:intergenic | 25.0% |
! | AATTGAATTAAGAGGAAAAG+GGG | - | chr5.1:43506711-43506730 | MS.gene65360:intron | 25.0% |
! | ACTAGAATTTCATTAATAGG+TGG | + | chr5.1:43507596-43507615 | None:intergenic | 25.0% |
! | ATACAAATAGAAGTTTGACT+TGG | - | chr5.1:43508352-43508371 | MS.gene65360:CDS | 25.0% |
! | ATAGATTATAGTCTTCAACT+AGG | - | chr5.1:43507430-43507449 | MS.gene65360:intron | 25.0% |
! | ATATAATGCAGAAAGTAGAA+TGG | - | chr5.1:43507929-43507948 | MS.gene65360:intron | 25.0% |
! | CCTAAGTAAATTGAATTAAG+AGG | - | chr5.1:43506703-43506722 | MS.gene65360:intron | 25.0% |
! | CCTCTTAATTCAATTTACTT+AGG | + | chr5.1:43506706-43506725 | None:intergenic | 25.0% |
! | TATAATGCAGAAAGTAGAAT+GGG | - | chr5.1:43507930-43507949 | MS.gene65360:intron | 25.0% |
! | TCAAATCAAACAATTCTATG+TGG | - | chr5.1:43506586-43506605 | MS.gene65360:intron | 25.0% |
! | TGGCAAGATTAAAAAAACAT+TGG | + | chr5.1:43506951-43506970 | None:intergenic | 25.0% |
!! | ATTTTCTCATGATCACTAAT+TGG | + | chr5.1:43507790-43507809 | None:intergenic | 25.0% |
!! | CTTTTGTTAGCATTAAGTTT+TGG | - | chr5.1:43508322-43508341 | MS.gene65360:CDS | 25.0% |
!! | GTTTTCAGAAAATATTGCAA+TGG | - | chr5.1:43508267-43508286 | MS.gene65360:CDS | 25.0% |
!! | TACAAATAGAAGTTTGACTT+GGG | - | chr5.1:43508353-43508372 | MS.gene65360:CDS | 25.0% |
!! | TTAATACTGTGCCTTAATTT+TGG | + | chr5.1:43507469-43507488 | None:intergenic | 25.0% |
!! | TTTTCTCATGATCACTAATT+GGG | + | chr5.1:43507789-43507808 | None:intergenic | 25.0% |
!!! | AGTTATTTTTACACATTTCG+TGG | + | chr5.1:43507667-43507686 | None:intergenic | 25.0% |
!!! | ATGTTTGTTATTTGTTTGCT+AGG | - | chr5.1:43508490-43508509 | MS.gene65360:CDS | 25.0% |
!!! | CATAGCATTGATAACTAATT+AGG | + | chr5.1:43507556-43507575 | None:intergenic | 25.0% |
!!! | TGCTAATAGTATTTTGACTA+TGG | + | chr5.1:43507248-43507267 | None:intergenic | 25.0% |
!!! | TTGCAATATTTTCTGAAAAC+CGG | + | chr5.1:43508267-43508286 | None:intergenic | 25.0% |
AAAACATTGGCACTTAGTTA+AGG | + | chr5.1:43506938-43506957 | None:intergenic | 30.0% | |
AAATCATGTACAACTTGAGA+TGG | + | chr5.1:43506168-43506187 | None:intergenic | 30.0% | |
ACACTTTCAATATGAAGTGT+CGG | - | chr5.1:43506832-43506851 | MS.gene65360:intron | 30.0% | |
ACTCTTTAGACTCTACATAT+TGG | + | chr5.1:43507635-43507654 | None:intergenic | 30.0% | |
ATAATGCAGAAAGTAGAATG+GGG | - | chr5.1:43507931-43507950 | MS.gene65360:intron | 30.0% | |
ATGAAATTCTAGTGTTGTGT+AGG | - | chr5.1:43507603-43507622 | MS.gene65360:intron | 30.0% | |
ATTATAGTCTTCAACTAGGT+AGG | - | chr5.1:43507434-43507453 | MS.gene65360:intron | 30.0% | |
ATTGAATTAAGAGGAAAAGG+GGG | - | chr5.1:43506712-43506731 | MS.gene65360:intron | 30.0% | |
GAATTTCATTAATAGGTGGT+AGG | + | chr5.1:43507592-43507611 | None:intergenic | 30.0% | |
GTGCCTAAAAGATTTATACA+TGG | - | chr5.1:43507357-43507376 | MS.gene65360:intron | 30.0% | |
GTTGAAGACTATAATCTATG+AGG | + | chr5.1:43507429-43507448 | None:intergenic | 30.0% | |
TCTGCATTATATCAGATGAA+AGG | + | chr5.1:43507921-43507940 | None:intergenic | 30.0% | |
TGAAATTCTAGTGTTGTGTA+GGG | - | chr5.1:43507604-43507623 | MS.gene65360:intron | 30.0% | |
TGAGTGATGAAGAATTGTTA+TGG | - | chr5.1:43506187-43506206 | MS.gene65360:CDS | 30.0% | |
TGTCTGTATATAGCATTTCA+TGG | - | chr5.1:43507157-43507176 | MS.gene65360:intron | 30.0% | |
!! | CTTCATATTGAAAGTGTTTC+CGG | + | chr5.1:43506829-43506848 | None:intergenic | 30.0% |
!! | TGCAATATTTTCTGAAAACC+GGG | + | chr5.1:43508266-43508285 | None:intergenic | 30.0% |
!!! | GTATTTTGACTATGGAATAC+TGG | + | chr5.1:43507240-43507259 | None:intergenic | 30.0% |
AAAAACTCACAAGTAACCTC+TGG | + | chr5.1:43508423-43508442 | None:intergenic | 35.0% | |
AAACTCAGACAATGGAGAAA+AGG | - | chr5.1:43508177-43508196 | MS.gene65360:CDS | 35.0% | |
AACTATCCTCTTCCATACTA+CGG | + | chr5.1:43507103-43507122 | None:intergenic | 35.0% | |
AACTCAGACAATGGAGAAAA+GGG | - | chr5.1:43508178-43508197 | MS.gene65360:CDS | 35.0% | |
AATTAAATGAAGCAGAGCAG+AGG | - | chr5.1:43506737-43506756 | MS.gene65360:intron | 35.0% | |
ACTTCAGAACCATTGTAAGA+TGG | + | chr5.1:43506372-43506391 | None:intergenic | 35.0% | |
AGTTAAATATGTGAGACCAG+AGG | - | chr5.1:43508404-43508423 | MS.gene65360:CDS | 35.0% | |
ATAATCTATGAGGTGGCAAA+TGG | + | chr5.1:43507419-43507438 | None:intergenic | 35.0% | |
ATAGGTGGTAGGAATTTAGA+TGG | + | chr5.1:43507581-43507600 | None:intergenic | 35.0% | |
ATTAAATGAAGCAGAGCAGA+GGG | - | chr5.1:43506738-43506757 | MS.gene65360:intron | 35.0% | |
ATTAACTGAGGATATGTAGC+TGG | - | chr5.1:43507484-43507503 | MS.gene65360:intron | 35.0% | |
ATTGTCTGAGTTTGATCGTA+GGG | + | chr5.1:43508170-43508189 | None:intergenic | 35.0% | |
CTGGTCTCACATATTTAACT+GGG | + | chr5.1:43508404-43508423 | None:intergenic | 35.0% | |
GAAGACTATAATCTATGAGG+TGG | + | chr5.1:43507426-43507445 | None:intergenic | 35.0% | |
GCACTTAGTTAAGGTAGTTA+TGG | + | chr5.1:43506929-43506948 | None:intergenic | 35.0% | |
TCGCTCATGTGTTATACTAT+TGG | - | chr5.1:43507044-43507063 | MS.gene65360:intron | 35.0% | |
TCTGGTCTCACATATTTAAC+TGG | + | chr5.1:43508405-43508424 | None:intergenic | 35.0% | |
TGAAAACCGGGTAATATGTT+CGG | + | chr5.1:43508254-43508273 | None:intergenic | 35.0% | |
TGGAATCGAATACTATTGGT+TGG | + | chr5.1:43506104-43506123 | None:intergenic | 35.0% | |
TGGCAAATGGCAATTTATCT+GGG | + | chr5.1:43507406-43507425 | None:intergenic | 35.0% | |
TTAAGGCACAGTATTAACTG+AGG | - | chr5.1:43507472-43507491 | MS.gene65360:intron | 35.0% | |
! | AAGTTCTTCAAAGGGCATAA+AGG | - | chr5.1:43506318-43506337 | MS.gene65360:CDS | 35.0% |
! | AATACTATTGGTTGGCGTAA+CGG | + | chr5.1:43506096-43506115 | None:intergenic | 35.0% |
! | ACTAACATGTGTCCTCTTTT+TGG | + | chr5.1:43507188-43507207 | None:intergenic | 35.0% |
! | AGAGGTTACTTGTGAGTTTT+TGG | - | chr5.1:43508422-43508441 | MS.gene65360:CDS | 35.0% |
! | AGTTCTTCAAAGGGCATAAA+GGG | - | chr5.1:43506319-43506338 | MS.gene65360:CDS | 35.0% |
!! | ATCTTACAATGGTTCTGAAG+TGG | - | chr5.1:43506371-43506390 | MS.gene65360:CDS | 35.0% |
!! | GTGACATGTACGTTTTAAGT+TGG | - | chr5.1:43506887-43506906 | MS.gene65360:intron | 35.0% |
!! | GTGAGTTTTTGGAGAATTTG+AGG | - | chr5.1:43508433-43508452 | MS.gene65360:CDS | 35.0% |
AAGAACAAAAACGCCACCTT+CGG | + | chr5.1:43506261-43506280 | None:intergenic | 40.0% | |
AATGGAGAAAAGGGTCACAA+TGG | - | chr5.1:43508187-43508206 | MS.gene65360:CDS | 40.0% | |
AATTCTAGTGTTGTGTAGGG+AGG | - | chr5.1:43507607-43507626 | MS.gene65360:intron | 40.0% | |
ACCAGAGATAGAAAATGCAG+GGG | - | chr5.1:43507744-43507763 | MS.gene65360:intron | 40.0% | |
ACTGTTGAGAAGTTGAAGAG+TGG | + | chr5.1:43508054-43508073 | None:intergenic | 40.0% | |
AGACCAGAGATAGAAAATGC+AGG | - | chr5.1:43507742-43507761 | MS.gene65360:intron | 40.0% | |
AGGCTGGAATCGAATACTAT+TGG | + | chr5.1:43506108-43506127 | None:intergenic | 40.0% | |
AGGGTCACAATGGTTTGAAA+TGG | - | chr5.1:43508197-43508216 | MS.gene65360:CDS | 40.0% | |
ATATGTAGCTGGTGGAAGTT+TGG | - | chr5.1:43507495-43507514 | MS.gene65360:intron | 40.0% | |
ATCAGACCGAACATATTACC+CGG | - | chr5.1:43508245-43508264 | MS.gene65360:CDS | 40.0% | |
ATCCTTCATGACTACCATTG+AGG | + | chr5.1:43506128-43506147 | None:intergenic | 40.0% | |
ATGAGCCTTGACAATGAAGT+AGG | + | chr5.1:43508525-43508544 | None:intergenic | 40.0% | |
ATTCTAGTGTTGTGTAGGGA+GGG | - | chr5.1:43507608-43507627 | MS.gene65360:intron | 40.0% | |
ATTCTCCTACCATGAAACAC+AGG | + | chr5.1:43506402-43506421 | None:intergenic | 40.0% | |
CACTCGAATCCATCTTACAA+TGG | - | chr5.1:43506360-43506379 | MS.gene65360:CDS | 40.0% | |
CATTGTCTGAGTTTGATCGT+AGG | + | chr5.1:43508171-43508190 | None:intergenic | 40.0% | |
CTACGATCAAACTCAGACAA+TGG | - | chr5.1:43508169-43508188 | MS.gene65360:CDS | 40.0% | |
CTCAACAAAAAGCTACGTCA+TGG | - | chr5.1:43508092-43508111 | MS.gene65360:CDS | 40.0% | |
CTCACATATTTAACTGGGTG+TGG | + | chr5.1:43508399-43508418 | None:intergenic | 40.0% | |
CTGATATGAGAACGAATCGT+TGG | + | chr5.1:43508020-43508039 | None:intergenic | 40.0% | |
GACCAGAGATAGAAAATGCA+GGG | - | chr5.1:43507743-43507762 | MS.gene65360:intron | 40.0% | |
GGTCATGAGGACCAAAATTA+AGG | - | chr5.1:43507455-43507474 | MS.gene65360:intron | 40.0% | |
GTGGCAAATGGCAATTTATC+TGG | + | chr5.1:43507407-43507426 | None:intergenic | 40.0% | |
GTTATGGTCTCAATCGATCA+TGG | + | chr5.1:43506913-43506932 | None:intergenic | 40.0% | |
TCTTGCCTACTTCATTGTCA+AGG | - | chr5.1:43508517-43508536 | MS.gene65360:CDS | 40.0% | |
TGTGGGAGAAGTTCTTCAAA+GGG | - | chr5.1:43506310-43506329 | MS.gene65360:CDS | 40.0% | |
TTCATGGTTCCTCCAAAAAG+AGG | - | chr5.1:43507173-43507192 | MS.gene65360:intron | 40.0% | |
TTGTCTGAGTTTGATCGTAG+GGG | + | chr5.1:43508169-43508188 | None:intergenic | 40.0% | |
! | AACATGTGTCCTCTTTTTGG+AGG | + | chr5.1:43507185-43507204 | None:intergenic | 40.0% |
! | GCGTTTTTGTTCTTGGTTAG+AGG | - | chr5.1:43506267-43506286 | MS.gene65360:CDS | 40.0% |
!!! | AAAACTTTTTTGAGGGGGAG+AGG | - | chr5.1:43506986-43507005 | MS.gene65360:intron | 40.0% |
AACCAACCATGACCGTAGTA+TGG | - | chr5.1:43507088-43507107 | MS.gene65360:intron | 45.0% | |
AACTGAGGATATGTAGCTGG+TGG | - | chr5.1:43507487-43507506 | MS.gene65360:intron | 45.0% | |
AGAGTCCTGTGTTTCATGGT+AGG | - | chr5.1:43506394-43506413 | MS.gene65360:CDS | 45.0% | |
AGCCTCAATGGTAGTCATGA+AGG | - | chr5.1:43506123-43506142 | MS.gene65360:CDS | 45.0% | |
ATACTACGGTCATGGTTGGT+TGG | + | chr5.1:43507089-43507108 | None:intergenic | 45.0% | |
CCACTGAAGTAGCTTACAAC+TGG | - | chr5.1:43507009-43507028 | MS.gene65360:intron | 45.0% | |
CCAGTTGTAAGCTACTTCAG+TGG | + | chr5.1:43507012-43507031 | None:intergenic | 45.0% | |
CTAGAAGGAGAAGGTAAGTG+AGG | + | chr5.1:43505975-43505994 | None:intergenic | 45.0% | |
CTAGCATGTGGTATCACACT+TGG | - | chr5.1:43505991-43506010 | MS.gene65360:CDS | 45.0% | |
CTGTGGGAGAAGTTCTTCAA+AGG | - | chr5.1:43506309-43506328 | MS.gene65360:CDS | 45.0% | |
CTTCAACTAGGTAGGTCATG+AGG | - | chr5.1:43507442-43507461 | MS.gene65360:intron | 45.0% | |
CTTCATTGTCAAGGCTCATG+AGG | - | chr5.1:43508526-43508545 | MS.gene65360:CDS | 45.0% | |
GTAACCAGGTGAGTTAGTAC+CGG | - | chr5.1:43506807-43506826 | MS.gene65360:intron | 45.0% | |
GTATTCGATTCCAGCCTCAA+TGG | - | chr5.1:43506111-43506130 | MS.gene65360:CDS | 45.0% | |
GTGTGATACCACATGCTAGA+AGG | + | chr5.1:43505990-43506009 | None:intergenic | 45.0% | |
TACCACATGCTAGAAGGAGA+AGG | + | chr5.1:43505984-43506003 | None:intergenic | 45.0% | |
TACCTTCTCCTTCTAGCATG+TGG | - | chr5.1:43505979-43505998 | MS.gene65360:CDS | 45.0% | |
TGGTAGGAGAATTCCCAGTA+AGG | - | chr5.1:43506410-43506429 | MS.gene65360:CDS | 45.0% | |
TTCATGACTACCATTGAGGC+TGG | + | chr5.1:43506124-43506143 | None:intergenic | 45.0% | |
TTCCATACTACGGTCATGGT+TGG | + | chr5.1:43507093-43507112 | None:intergenic | 45.0% | |
TTGAAGAACTTCTCCCACAG+AGG | + | chr5.1:43506309-43506328 | None:intergenic | 45.0% | |
! | GAAGGTGGCGTTTTTGTTCT+TGG | - | chr5.1:43506260-43506279 | MS.gene65360:CDS | 45.0% |
! | TACTACGGTCATGGTTGGTT+GGG | + | chr5.1:43507088-43507107 | None:intergenic | 45.0% |
! | TCCCCTGCATTTTCTATCTC+TGG | + | chr5.1:43507748-43507767 | None:intergenic | 45.0% |
!! | ACTTGGGTTGACTGGTCAAA+GGG | - | chr5.1:43508369-43508388 | MS.gene65360:CDS | 45.0% |
!! | GAAGTTTGACTTGGGTTGAC+TGG | - | chr5.1:43508361-43508380 | MS.gene65360:CDS | 45.0% |
!!! | CAATATTTTTTAATTATTAT+AGG | + | chr5.1:43506784-43506803 | None:intergenic | 5.0% |
ACCTTCGGAACTCGATCGAA+AGG | + | chr5.1:43506246-43506265 | None:intergenic | 50.0% | |
CCATGACCGTAGTATGGAAG+AGG | - | chr5.1:43507094-43507113 | MS.gene65360:intron | 50.0% | |
CCTCTTCCATACTACGGTCA+TGG | + | chr5.1:43507097-43507116 | None:intergenic | 50.0% | |
GTGGAGAGTCCTGTGTTTCA+TGG | - | chr5.1:43506390-43506409 | MS.gene65360:CDS | 50.0% | |
GTTTCCGGTACTAACTCACC+TGG | + | chr5.1:43506814-43506833 | None:intergenic | 50.0% | |
TACGACCAGGCAAGTTCAGT+TGG | - | chr5.1:43508117-43508136 | MS.gene65360:CDS | 50.0% | |
TCCTTTCGATCGAGTTCCGA+AGG | - | chr5.1:43506242-43506261 | MS.gene65360:CDS | 50.0% | |
TTTCGATCGAGTTCCGAAGG+TGG | - | chr5.1:43506245-43506264 | MS.gene65360:CDS | 50.0% | |
! | GCTCATGAGGTTTGCTCCAA+AGG | - | chr5.1:43508539-43508558 | MS.gene65360:CDS | 50.0% |
! | GTTGGTTGGGTGGTTTGTGA+GGG | + | chr5.1:43507075-43507094 | None:intergenic | 50.0% |
! | TTGGTTGGGTGGTTTGTGAG+GGG | + | chr5.1:43507074-43507093 | None:intergenic | 50.0% |
!! | GACTTGGGTTGACTGGTCAA+AGG | - | chr5.1:43508368-43508387 | MS.gene65360:CDS | 50.0% |
CAAGTTCAGTTGGACGCGGA+CGG | - | chr5.1:43508127-43508146 | MS.gene65360:CDS | 55.0% | |
CAGGCAAGTTCAGTTGGACG+CGG | - | chr5.1:43508123-43508142 | MS.gene65360:CDS | 55.0% | |
CTACGTCATGGCTTACGACC+AGG | - | chr5.1:43508104-43508123 | MS.gene65360:CDS | 55.0% | |
GGTTAGAGGTCCTGTGCCTT+TGG | - | chr5.1:43506281-43506300 | MS.gene65360:CDS | 55.0% | |
TTCTCCCACAGAGGAGCCAA+AGG | + | chr5.1:43506300-43506319 | None:intergenic | 55.0% | |
! | GGTTGGTTGGGTGGTTTGTG+AGG | + | chr5.1:43507076-43507095 | None:intergenic | 55.0% |
! | GTTTGCTAGCAGGCGACGTT+CGG | + | chr5.1:43507977-43507996 | None:intergenic | 55.0% |
! | TACGGTCATGGTTGGTTGGG+TGG | + | chr5.1:43507085-43507104 | None:intergenic | 55.0% |
! | TGGGTTGACTGGTCAAAGGG+TGG | - | chr5.1:43508372-43508391 | MS.gene65360:CDS | 55.0% |
! | TGTGCCTTTGGCTCCTCTGT+GGG | - | chr5.1:43506293-43506312 | MS.gene65360:CDS | 55.0% |
CGCGTCCAACTGAACTTGCC+TGG | + | chr5.1:43508125-43508144 | None:intergenic | 60.0% | |
! | CACAGAGGAGCCAAAGGCAC+AGG | + | chr5.1:43506294-43506313 | None:intergenic | 60.0% |
! | CGAGAAGCGCGTTTGCTAGC+AGG | + | chr5.1:43507987-43508006 | None:intergenic | 60.0% |
! | CTGTGCCTTTGGCTCCTCTG+TGG | - | chr5.1:43506292-43506311 | MS.gene65360:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 43505892 | 43508575 | 43505892 | ID=MS.gene65360 |
chr5.1 | mRNA | 43505892 | 43508575 | 43505892 | ID=MS.gene65360.t1;Parent=MS.gene65360 |
chr5.1 | exon | 43508036 | 43508575 | 43508036 | ID=MS.gene65360.t1.exon1;Parent=MS.gene65360.t1 |
chr5.1 | CDS | 43508036 | 43508575 | 43508036 | ID=cds.MS.gene65360.t1;Parent=MS.gene65360.t1 |
chr5.1 | exon | 43505892 | 43506527 | 43505892 | ID=MS.gene65360.t1.exon2;Parent=MS.gene65360.t1 |
chr5.1 | CDS | 43505892 | 43506527 | 43505892 | ID=cds.MS.gene65360.t1;Parent=MS.gene65360.t1 |
Gene Sequence |
Protein sequence |