AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65360.t1 MTR_5g055480 97.698 391 8 1 1 391 1 390 0.0 791
MS.gene65360.t1 MTR_1g110290 68.367 392 120 3 1 391 5 393 0.0 557
MS.gene65360.t1 MTR_6g083830 54.436 417 164 5 1 391 3 419 4.67e-162 461
MS.gene65360.t1 MTR_5g006920 50.355 423 176 4 1 391 1 421 5.31e-151 433
MS.gene65360.t1 MTR_5g006930 53.046 394 174 4 1 391 1 386 7.62e-147 421
MS.gene65360.t1 MTR_3g104840 48.780 410 172 8 1 391 3 393 5.09e-134 389
MS.gene65360.t1 MTR_1g016880 50.145 345 164 3 40 382 28 366 3.52e-127 371
MS.gene65360.t1 MTR_2g005350 53.595 306 140 1 86 389 131 436 8.00e-124 365
MS.gene65360.t1 MTR_8g015500 52.787 305 142 2 89 391 109 413 1.08e-117 348
MS.gene65360.t1 MTR_3g108740 41.390 331 156 8 82 382 49 371 2.45e-73 233
MS.gene65360.t1 MTR_1g009960 40.063 317 163 5 92 384 79 392 1.30e-70 227
MS.gene65360.t1 MTR_4g127550 39.339 333 164 7 82 384 63 387 8.34e-70 225
MS.gene65360.t1 MTR_2g037600 42.105 285 139 5 123 384 105 386 4.31e-65 213
MS.gene65360.t1 MTR_2g037620 39.446 289 140 5 123 384 97 377 4.82e-65 212
MS.gene65360.t1 MTR_1g009960 41.573 267 147 3 92 351 79 343 7.94e-64 209
MS.gene65360.t1 MTR_2g024120 36.909 317 155 9 108 382 46 359 2.72e-53 181
MS.gene65360.t1 MTR_8g094180 36.246 309 144 9 123 382 55 359 3.02e-53 181
MS.gene65360.t1 MTR_8g094180 37.218 266 132 6 123 356 55 317 5.97e-50 171
MS.gene65360.t1 MTR_3g106930 34.969 326 192 9 78 389 55 374 3.79e-44 157
MS.gene65360.t1 MTR_1g048320 38.889 288 145 10 123 389 64 341 1.82e-38 141
MS.gene65360.t1 MTR_2g087610 34.783 299 151 11 124 389 78 365 2.21e-37 139
MS.gene65360.t1 MTR_1g031060 37.931 290 147 9 123 389 80 359 2.24e-37 139
MS.gene65360.t1 MTR_1g031080 35.484 248 130 8 165 389 49 289 4.20e-30 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65360.t1 AT1G68390 64.309 311 107 3 85 391 98 408 4.73e-154 441
MS.gene65360.t1 AT1G10280 47.475 396 179 7 22 389 16 410 4.22e-128 375
MS.gene65360.t1 AT5G11730 54.167 312 141 2 80 389 73 384 4.14e-127 371
MS.gene65360.t1 AT1G73810 49.024 410 183 7 1 389 12 416 3.17e-126 370
MS.gene65360.t1 AT1G51770 52.353 340 159 3 54 391 54 392 1.21e-125 368
MS.gene65360.t1 AT1G68380 50.815 368 167 7 30 390 31 391 3.08e-124 364
MS.gene65360.t1 AT5G25970 51.572 318 149 3 77 389 68 385 4.48e-120 353
MS.gene65360.t1 AT5G25970 51.572 318 149 3 77 389 68 385 4.48e-120 353
MS.gene65360.t1 AT5G25970 51.572 318 149 3 77 389 68 385 4.48e-120 353
MS.gene65360.t1 AT3G21310 48.225 338 168 3 54 389 49 381 5.43e-118 348
MS.gene65360.t1 AT3G21310 48.225 338 168 3 54 389 49 381 5.43e-118 348
MS.gene65360.t1 AT1G10880 52.759 290 135 2 98 386 93 381 1.89e-114 339
MS.gene65360.t1 AT1G51770 47.647 340 148 4 54 391 54 365 1.82e-108 323
MS.gene65360.t1 AT5G16170 42.971 377 190 4 32 389 37 407 2.05e-108 325
MS.gene65360.t1 AT4G30060 39.329 328 160 7 84 382 70 387 2.32e-68 221
MS.gene65360.t1 AT4G30060 39.329 328 160 7 84 382 70 387 2.32e-68 221
MS.gene65360.t1 AT2G19160 38.066 331 168 7 84 386 67 388 7.72e-68 220
MS.gene65360.t1 AT2G19160 38.066 331 168 7 84 386 67 388 7.72e-68 220
MS.gene65360.t1 AT4G25870 39.521 334 172 7 78 386 54 382 9.60e-68 219
MS.gene65360.t1 AT4G31350 41.034 290 148 4 123 391 88 375 1.33e-67 219
MS.gene65360.t1 AT4G31350 41.034 290 148 4 123 391 88 375 1.33e-67 219
MS.gene65360.t1 AT4G31350 41.034 290 148 4 123 391 88 375 1.33e-67 219
MS.gene65360.t1 AT5G57270 39.241 316 164 5 96 386 69 381 8.18e-64 209
MS.gene65360.t1 AT5G57270 39.241 316 164 5 96 386 69 381 8.18e-64 209
MS.gene65360.t1 AT5G57270 39.241 316 164 5 96 386 69 381 8.18e-64 209
MS.gene65360.t1 AT5G57270 39.241 316 164 5 96 386 69 381 8.18e-64 209
MS.gene65360.t1 AT5G57270 39.241 316 164 5 96 386 69 381 8.18e-64 209
MS.gene65360.t1 AT3G21310 48.558 208 101 2 53 259 48 250 4.19e-63 203
MS.gene65360.t1 AT4G31350 40.000 290 146 5 123 391 88 370 1.89e-62 205
MS.gene65360.t1 AT5G14550 36.246 309 149 8 119 383 60 364 2.69e-54 184
MS.gene65360.t1 AT5G14550 36.364 308 148 8 120 383 61 364 2.80e-54 184
MS.gene65360.t1 AT5G14550 37.884 293 142 9 120 381 61 344 1.22e-53 181
MS.gene65360.t1 AT1G11940 36.076 316 154 11 109 382 61 370 1.61e-51 177
MS.gene65360.t1 AT1G62305 36.246 309 149 10 116 382 62 364 1.75e-51 177
MS.gene65360.t1 AT5G25330 34.574 376 209 14 30 389 5 359 9.10e-49 169
MS.gene65360.t1 AT5G14550 38.062 289 142 10 120 383 61 337 6.84e-48 166
MS.gene65360.t1 AT3G52060 35.740 277 161 8 123 389 74 343 8.24e-48 166
MS.gene65360.t1 AT1G62305 42.466 219 99 6 116 312 62 275 1.23e-46 162
MS.gene65360.t1 AT1G11940 45.833 192 95 6 109 296 61 247 2.27e-45 157
MS.gene65360.t1 AT1G62305 33.010 309 135 10 116 382 62 340 2.92e-38 141
MS.gene65360.t1 AT5G22070 34.667 300 151 12 124 389 71 359 4.22e-37 138
MS.gene65360.t1 AT4G32290 35.417 288 160 7 124 389 93 376 1.51e-34 132

Find 75 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGTCTCACATATTTAAC+TGG 0.301424 5.1:+43506043 None:intergenic
GTTTGCTAGCAGGCGACGTT+CGG 0.332144 5.1:+43506471 None:intergenic
GGTTAGAGGTCCTGTGCCTT+TGG 0.333074 5.1:-43508164 MS.gene65360:CDS
AAAGGATATTCATCTATCTT+AGG 0.344852 5.1:+43508220 None:intergenic
AATCAAACATGTAAGTATAA+TGG 0.347050 5.1:-43505989 MS.gene65360:CDS
AAGTTCTTCAAAGGGCATAA+AGG 0.385070 5.1:-43508127 MS.gene65360:CDS
AGGCTGGAATCGAATACTAT+TGG 0.391723 5.1:+43508340 None:intergenic
GTTTATAAGTGCATGACCTT+TGG 0.392410 5.1:+43505890 None:intergenic
ATGTTTGTTATTTGTTTGCT+AGG 0.408942 5.1:-43505955 MS.gene65360:CDS
AAACTCAGACAATGGAGAAA+AGG 0.424464 5.1:-43506268 MS.gene65360:CDS
AGGGTCACAATGGTTTGAAA+TGG 0.427955 5.1:-43506248 MS.gene65360:CDS
CGAGAAGCGCGTTTGCTAGC+AGG 0.432228 5.1:+43506461 None:intergenic
AGTTCTTCAAAGGGCATAAA+GGG 0.434327 5.1:-43508126 MS.gene65360:CDS
GAAGTTTGACTTGGGTTGAC+TGG 0.435516 5.1:-43506084 MS.gene65360:CDS
TATAATGCAGAAAGTAGAAT+GGG 0.436466 5.1:-43506515 MS.gene65360:intron
AACTTAATGCTAACAAAAGT+TGG 0.443687 5.1:+43506127 None:intergenic
TGAAAACCGGGTAATATGTT+CGG 0.445181 5.1:+43506194 None:intergenic
AACTCAGACAATGGAGAAAA+GGG 0.454574 5.1:-43506267 MS.gene65360:CDS
CGCGTCCAACTGAACTTGCC+TGG 0.457072 5.1:+43506323 None:intergenic
GTGTGATACCACATGCTAGA+AGG 0.467681 5.1:+43508458 None:intergenic
GCTCATGAGGTTTGCTCCAA+AGG 0.468695 5.1:-43505906 MS.gene65360:CDS
ACTTGGGTTGACTGGTCAAA+GGG 0.471540 5.1:-43506076 MS.gene65360:CDS
TGAGTGATGAAGAATTGTTA+TGG 0.473976 5.1:-43508258 MS.gene65360:CDS
ATTGTCTGAGTTTGATCGTA+GGG 0.474052 5.1:+43506278 None:intergenic
TGTGCCTTTGGCTCCTCTGT+GGG 0.475956 5.1:-43508152 MS.gene65360:CDS
CTGATATGAGAACGAATCGT+TGG 0.478739 5.1:+43506428 None:intergenic
GTGGAGAGTCCTGTGTTTCA+TGG 0.489177 5.1:-43508055 MS.gene65360:CDS
AATACTATTGGTTGGCGTAA+CGG 0.490927 5.1:+43508352 None:intergenic
GACTTGGGTTGACTGGTCAA+AGG 0.498955 5.1:-43506077 MS.gene65360:CDS
ACTTCAGAACCATTGTAAGA+TGG 0.502479 5.1:+43508076 None:intergenic
CTAGCATGTGGTATCACACT+TGG 0.505414 5.1:-43508454 MS.gene65360:CDS
CTCACATATTTAACTGGGTG+TGG 0.508350 5.1:+43506049 None:intergenic
AGCCTCAATGGTAGTCATGA+AGG 0.515851 5.1:-43508322 MS.gene65360:CDS
CTGTGGGAGAAGTTCTTCAA+AGG 0.518666 5.1:-43508136 MS.gene65360:CDS
TACAAATAGAAGTTTGACTT+GGG 0.522087 5.1:-43506092 MS.gene65360:CDS
ATATAATGCAGAAAGTAGAA+TGG 0.524034 5.1:-43506516 MS.gene65360:intron
CTACGTCATGGCTTACGACC+AGG 0.528541 5.1:-43506341 MS.gene65360:CDS
TACGACCAGGCAAGTTCAGT+TGG 0.529529 5.1:-43506328 MS.gene65360:CDS
TACCTTCTCCTTCTAGCATG+TGG 0.532227 5.1:-43508466 MS.gene65360:CDS
TTCATGACTACCATTGAGGC+TGG 0.539090 5.1:+43508324 None:intergenic
CTGTGCCTTTGGCTCCTCTG+TGG 0.539356 5.1:-43508153 MS.gene65360:CDS
ATGAGCCTTGACAATGAAGT+AGG 0.542080 5.1:+43505923 None:intergenic
GTATTCGATTCCAGCCTCAA+TGG 0.543962 5.1:-43508334 MS.gene65360:CDS
CACAGAGGAGCCAAAGGCAC+AGG 0.545018 5.1:+43508154 None:intergenic
TGGTAGGAGAATTCCCAGTA+AGG 0.545755 5.1:-43508035 MS.gene65360:intron
TCTTGCCTACTTCATTGTCA+AGG 0.554046 5.1:-43505928 MS.gene65360:CDS
ATACAAATAGAAGTTTGACT+TGG 0.556289 5.1:-43506093 MS.gene65360:CDS
TCCTTTCGATCGAGTTCCGA+AGG 0.557813 5.1:-43508203 MS.gene65360:CDS
ATCCTTCATGACTACCATTG+AGG 0.559449 5.1:+43508320 None:intergenic
ATCTTACAATGGTTCTGAAG+TGG 0.559601 5.1:-43508074 MS.gene65360:CDS
TGTGGGAGAAGTTCTTCAAA+GGG 0.570757 5.1:-43508135 MS.gene65360:CDS
CTACGATCAAACTCAGACAA+TGG 0.571848 5.1:-43506276 MS.gene65360:CDS
TTCTCCCACAGAGGAGCCAA+AGG 0.571960 5.1:+43508148 None:intergenic
CTTCATTGTCAAGGCTCATG+AGG 0.577302 5.1:-43505919 MS.gene65360:CDS
TGGAATCGAATACTATTGGT+TGG 0.581530 5.1:+43508344 None:intergenic
AAATCATGTACAACTTGAGA+TGG 0.582062 5.1:+43508280 None:intergenic
CTGGTCTCACATATTTAACT+GGG 0.587265 5.1:+43506044 None:intergenic
CATTGTCTGAGTTTGATCGT+AGG 0.589831 5.1:+43506277 None:intergenic
ACCTTCGGAACTCGATCGAA+AGG 0.595763 5.1:+43508202 None:intergenic
AGAGTCCTGTGTTTCATGGT+AGG 0.601294 5.1:-43508051 MS.gene65360:CDS
ACTGTTGAGAAGTTGAAGAG+TGG 0.604831 5.1:+43506394 None:intergenic
CAAGTTCAGTTGGACGCGGA+CGG 0.618278 5.1:-43506318 MS.gene65360:CDS
CTAGAAGGAGAAGGTAAGTG+AGG 0.623171 5.1:+43508473 None:intergenic
ATCAGACCGAACATATTACC+CGG 0.623786 5.1:-43506200 MS.gene65360:CDS
TTTCGATCGAGTTCCGAAGG+TGG 0.623922 5.1:-43508200 MS.gene65360:CDS
CACTCGAATCCATCTTACAA+TGG 0.632327 5.1:-43508085 MS.gene65360:CDS
CAGGCAAGTTCAGTTGGACG+CGG 0.637111 5.1:-43506322 MS.gene65360:CDS
TGGGTTGACTGGTCAAAGGG+TGG 0.638199 5.1:-43506073 MS.gene65360:CDS
AATGGAGAAAAGGGTCACAA+TGG 0.647572 5.1:-43506258 MS.gene65360:CDS
TACCACATGCTAGAAGGAGA+AGG 0.656558 5.1:+43508464 None:intergenic
ATTCTCCTACCATGAAACAC+AGG 0.661769 5.1:+43508046 None:intergenic
ATAATGCAGAAAGTAGAATG+GGG 0.668247 5.1:-43506514 MS.gene65360:intron
TTGTCTGAGTTTGATCGTAG+GGG 0.668407 5.1:+43506279 None:intergenic
TTGAAGAACTTCTCCCACAG+AGG 0.672369 5.1:+43508139 None:intergenic
AGTTAAATATGTGAGACCAG+AGG 0.732458 5.1:-43506041 MS.gene65360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAATTGAAAGAATAA+AGG - chr5.1:43507313-43507332 MS.gene65360:intron 10.0%
!! AATGTGTAAAAATAACTAAA+TGG - chr5.1:43507670-43507689 MS.gene65360:intron 15.0%
!!! AGATATAAAAAACTTTTTTG+AGG - chr5.1:43506978-43506997 MS.gene65360:intron 15.0%
!!! ATATAAAAAACTTTTTTGAG+GGG - chr5.1:43506980-43506999 MS.gene65360:intron 15.0%
!!! GAATTTTTTTTATCTTGATA+TGG - chr5.1:43506438-43506457 MS.gene65360:CDS 15.0%
!!! GATATAAAAAACTTTTTTGA+GGG - chr5.1:43506979-43506998 MS.gene65360:intron 15.0%
!!! GTTTTTTATATCTTTTCTTT+TGG + chr5.1:43506971-43506990 None:intergenic 15.0%
!!! TGTTTCAAATCTTAATTTTT+AGG - chr5.1:43507838-43507857 MS.gene65360:intron 15.0%
!! AAAAAATATTGAATGTAACC+AGG - chr5.1:43506793-43506812 MS.gene65360:intron 20.0%
!! AAATTGAATTAAGAGGAAAA+GGG - chr5.1:43506710-43506729 MS.gene65360:intron 20.0%
!! AACACTAGAATTTCATTAAT+AGG + chr5.1:43507599-43507618 None:intergenic 20.0%
!! AAGTATACAATAAACCATAA+AGG + chr5.1:43507819-43507838 None:intergenic 20.0%
!! AATCAAACATGTAAGTATAA+TGG - chr5.1:43508456-43508475 MS.gene65360:CDS 20.0%
!! ATCAAAGAACAAATAAAGTA+AGG - chr5.1:43506520-43506539 MS.gene65360:intron 20.0%
!! ATTGAAAGCTTAATTCAAAA+TGG + chr5.1:43507717-43507736 None:intergenic 20.0%
!! CAAAAAAAAATATGAAGTGT+CGG - chr5.1:43506863-43506882 MS.gene65360:intron 20.0%
!! GAGAAAATTAATTTCCTTTA+TGG - chr5.1:43507802-43507821 MS.gene65360:intron 20.0%
!! TAAATTGAATTAAGAGGAAA+AGG - chr5.1:43506709-43506728 MS.gene65360:intron 20.0%
!! TCAAAGAACAAATAAAGTAA+GGG - chr5.1:43506521-43506540 MS.gene65360:intron 20.0%
!! TTATGAATGAAAATTGTCAT+TGG - chr5.1:43506466-43506485 MS.gene65360:CDS 20.0%
!!! AAACCATGTATAAATCTTTT+AGG + chr5.1:43507363-43507382 None:intergenic 20.0%
!!! AATTGTTTGATTTGAAAACA+TGG + chr5.1:43506581-43506600 None:intergenic 20.0%
!!! GTATACACATGTTTTAAATA+TGG - chr5.1:43506633-43506652 MS.gene65360:intron 20.0%
!!! TACATTTTGAAACAAATTGA+TGG + chr5.1:43507891-43507910 None:intergenic 20.0%
!!! TATAAAAAACTTTTTTGAGG+GGG - chr5.1:43506981-43507000 MS.gene65360:intron 20.0%
! AAAAAATTCACTAACCTTAC+TGG + chr5.1:43506427-43506446 None:intergenic 25.0%
! AAAAATTCACTAACCTTACT+GGG + chr5.1:43506426-43506445 None:intergenic 25.0%
! AAAGGATATTCATCTATCTT+AGG + chr5.1:43506228-43506247 None:intergenic 25.0%
! AACTTAATGCTAACAAAAGT+TGG + chr5.1:43508321-43508340 None:intergenic 25.0%
! AATTGAATTAAGAGGAAAAG+GGG - chr5.1:43506711-43506730 MS.gene65360:intron 25.0%
! ACTAGAATTTCATTAATAGG+TGG + chr5.1:43507596-43507615 None:intergenic 25.0%
! ATACAAATAGAAGTTTGACT+TGG - chr5.1:43508352-43508371 MS.gene65360:CDS 25.0%
! ATAGATTATAGTCTTCAACT+AGG - chr5.1:43507430-43507449 MS.gene65360:intron 25.0%
! ATATAATGCAGAAAGTAGAA+TGG - chr5.1:43507929-43507948 MS.gene65360:intron 25.0%
! CCTAAGTAAATTGAATTAAG+AGG - chr5.1:43506703-43506722 MS.gene65360:intron 25.0%
! CCTCTTAATTCAATTTACTT+AGG + chr5.1:43506706-43506725 None:intergenic 25.0%
! TATAATGCAGAAAGTAGAAT+GGG - chr5.1:43507930-43507949 MS.gene65360:intron 25.0%
! TCAAATCAAACAATTCTATG+TGG - chr5.1:43506586-43506605 MS.gene65360:intron 25.0%
! TGGCAAGATTAAAAAAACAT+TGG + chr5.1:43506951-43506970 None:intergenic 25.0%
!! ATTTTCTCATGATCACTAAT+TGG + chr5.1:43507790-43507809 None:intergenic 25.0%
!! CTTTTGTTAGCATTAAGTTT+TGG - chr5.1:43508322-43508341 MS.gene65360:CDS 25.0%
!! GTTTTCAGAAAATATTGCAA+TGG - chr5.1:43508267-43508286 MS.gene65360:CDS 25.0%
!! TACAAATAGAAGTTTGACTT+GGG - chr5.1:43508353-43508372 MS.gene65360:CDS 25.0%
!! TTAATACTGTGCCTTAATTT+TGG + chr5.1:43507469-43507488 None:intergenic 25.0%
!! TTTTCTCATGATCACTAATT+GGG + chr5.1:43507789-43507808 None:intergenic 25.0%
!!! AGTTATTTTTACACATTTCG+TGG + chr5.1:43507667-43507686 None:intergenic 25.0%
!!! ATGTTTGTTATTTGTTTGCT+AGG - chr5.1:43508490-43508509 MS.gene65360:CDS 25.0%
!!! CATAGCATTGATAACTAATT+AGG + chr5.1:43507556-43507575 None:intergenic 25.0%
!!! TGCTAATAGTATTTTGACTA+TGG + chr5.1:43507248-43507267 None:intergenic 25.0%
!!! TTGCAATATTTTCTGAAAAC+CGG + chr5.1:43508267-43508286 None:intergenic 25.0%
AAAACATTGGCACTTAGTTA+AGG + chr5.1:43506938-43506957 None:intergenic 30.0%
AAATCATGTACAACTTGAGA+TGG + chr5.1:43506168-43506187 None:intergenic 30.0%
ACACTTTCAATATGAAGTGT+CGG - chr5.1:43506832-43506851 MS.gene65360:intron 30.0%
ACTCTTTAGACTCTACATAT+TGG + chr5.1:43507635-43507654 None:intergenic 30.0%
ATAATGCAGAAAGTAGAATG+GGG - chr5.1:43507931-43507950 MS.gene65360:intron 30.0%
ATGAAATTCTAGTGTTGTGT+AGG - chr5.1:43507603-43507622 MS.gene65360:intron 30.0%
ATTATAGTCTTCAACTAGGT+AGG - chr5.1:43507434-43507453 MS.gene65360:intron 30.0%
ATTGAATTAAGAGGAAAAGG+GGG - chr5.1:43506712-43506731 MS.gene65360:intron 30.0%
GAATTTCATTAATAGGTGGT+AGG + chr5.1:43507592-43507611 None:intergenic 30.0%
GTGCCTAAAAGATTTATACA+TGG - chr5.1:43507357-43507376 MS.gene65360:intron 30.0%
GTTGAAGACTATAATCTATG+AGG + chr5.1:43507429-43507448 None:intergenic 30.0%
TCTGCATTATATCAGATGAA+AGG + chr5.1:43507921-43507940 None:intergenic 30.0%
TGAAATTCTAGTGTTGTGTA+GGG - chr5.1:43507604-43507623 MS.gene65360:intron 30.0%
TGAGTGATGAAGAATTGTTA+TGG - chr5.1:43506187-43506206 MS.gene65360:CDS 30.0%
TGTCTGTATATAGCATTTCA+TGG - chr5.1:43507157-43507176 MS.gene65360:intron 30.0%
!! CTTCATATTGAAAGTGTTTC+CGG + chr5.1:43506829-43506848 None:intergenic 30.0%
!! TGCAATATTTTCTGAAAACC+GGG + chr5.1:43508266-43508285 None:intergenic 30.0%
!!! GTATTTTGACTATGGAATAC+TGG + chr5.1:43507240-43507259 None:intergenic 30.0%
AAAAACTCACAAGTAACCTC+TGG + chr5.1:43508423-43508442 None:intergenic 35.0%
AAACTCAGACAATGGAGAAA+AGG - chr5.1:43508177-43508196 MS.gene65360:CDS 35.0%
AACTATCCTCTTCCATACTA+CGG + chr5.1:43507103-43507122 None:intergenic 35.0%
AACTCAGACAATGGAGAAAA+GGG - chr5.1:43508178-43508197 MS.gene65360:CDS 35.0%
AATTAAATGAAGCAGAGCAG+AGG - chr5.1:43506737-43506756 MS.gene65360:intron 35.0%
ACTTCAGAACCATTGTAAGA+TGG + chr5.1:43506372-43506391 None:intergenic 35.0%
AGTTAAATATGTGAGACCAG+AGG - chr5.1:43508404-43508423 MS.gene65360:CDS 35.0%
ATAATCTATGAGGTGGCAAA+TGG + chr5.1:43507419-43507438 None:intergenic 35.0%
ATAGGTGGTAGGAATTTAGA+TGG + chr5.1:43507581-43507600 None:intergenic 35.0%
ATTAAATGAAGCAGAGCAGA+GGG - chr5.1:43506738-43506757 MS.gene65360:intron 35.0%
ATTAACTGAGGATATGTAGC+TGG - chr5.1:43507484-43507503 MS.gene65360:intron 35.0%
ATTGTCTGAGTTTGATCGTA+GGG + chr5.1:43508170-43508189 None:intergenic 35.0%
CTGGTCTCACATATTTAACT+GGG + chr5.1:43508404-43508423 None:intergenic 35.0%
GAAGACTATAATCTATGAGG+TGG + chr5.1:43507426-43507445 None:intergenic 35.0%
GCACTTAGTTAAGGTAGTTA+TGG + chr5.1:43506929-43506948 None:intergenic 35.0%
TCGCTCATGTGTTATACTAT+TGG - chr5.1:43507044-43507063 MS.gene65360:intron 35.0%
TCTGGTCTCACATATTTAAC+TGG + chr5.1:43508405-43508424 None:intergenic 35.0%
TGAAAACCGGGTAATATGTT+CGG + chr5.1:43508254-43508273 None:intergenic 35.0%
TGGAATCGAATACTATTGGT+TGG + chr5.1:43506104-43506123 None:intergenic 35.0%
TGGCAAATGGCAATTTATCT+GGG + chr5.1:43507406-43507425 None:intergenic 35.0%
TTAAGGCACAGTATTAACTG+AGG - chr5.1:43507472-43507491 MS.gene65360:intron 35.0%
! AAGTTCTTCAAAGGGCATAA+AGG - chr5.1:43506318-43506337 MS.gene65360:CDS 35.0%
! AATACTATTGGTTGGCGTAA+CGG + chr5.1:43506096-43506115 None:intergenic 35.0%
! ACTAACATGTGTCCTCTTTT+TGG + chr5.1:43507188-43507207 None:intergenic 35.0%
! AGAGGTTACTTGTGAGTTTT+TGG - chr5.1:43508422-43508441 MS.gene65360:CDS 35.0%
! AGTTCTTCAAAGGGCATAAA+GGG - chr5.1:43506319-43506338 MS.gene65360:CDS 35.0%
!! ATCTTACAATGGTTCTGAAG+TGG - chr5.1:43506371-43506390 MS.gene65360:CDS 35.0%
!! GTGACATGTACGTTTTAAGT+TGG - chr5.1:43506887-43506906 MS.gene65360:intron 35.0%
!! GTGAGTTTTTGGAGAATTTG+AGG - chr5.1:43508433-43508452 MS.gene65360:CDS 35.0%
AAGAACAAAAACGCCACCTT+CGG + chr5.1:43506261-43506280 None:intergenic 40.0%
AATGGAGAAAAGGGTCACAA+TGG - chr5.1:43508187-43508206 MS.gene65360:CDS 40.0%
AATTCTAGTGTTGTGTAGGG+AGG - chr5.1:43507607-43507626 MS.gene65360:intron 40.0%
ACCAGAGATAGAAAATGCAG+GGG - chr5.1:43507744-43507763 MS.gene65360:intron 40.0%
ACTGTTGAGAAGTTGAAGAG+TGG + chr5.1:43508054-43508073 None:intergenic 40.0%
AGACCAGAGATAGAAAATGC+AGG - chr5.1:43507742-43507761 MS.gene65360:intron 40.0%
AGGCTGGAATCGAATACTAT+TGG + chr5.1:43506108-43506127 None:intergenic 40.0%
AGGGTCACAATGGTTTGAAA+TGG - chr5.1:43508197-43508216 MS.gene65360:CDS 40.0%
ATATGTAGCTGGTGGAAGTT+TGG - chr5.1:43507495-43507514 MS.gene65360:intron 40.0%
ATCAGACCGAACATATTACC+CGG - chr5.1:43508245-43508264 MS.gene65360:CDS 40.0%
ATCCTTCATGACTACCATTG+AGG + chr5.1:43506128-43506147 None:intergenic 40.0%
ATGAGCCTTGACAATGAAGT+AGG + chr5.1:43508525-43508544 None:intergenic 40.0%
ATTCTAGTGTTGTGTAGGGA+GGG - chr5.1:43507608-43507627 MS.gene65360:intron 40.0%
ATTCTCCTACCATGAAACAC+AGG + chr5.1:43506402-43506421 None:intergenic 40.0%
CACTCGAATCCATCTTACAA+TGG - chr5.1:43506360-43506379 MS.gene65360:CDS 40.0%
CATTGTCTGAGTTTGATCGT+AGG + chr5.1:43508171-43508190 None:intergenic 40.0%
CTACGATCAAACTCAGACAA+TGG - chr5.1:43508169-43508188 MS.gene65360:CDS 40.0%
CTCAACAAAAAGCTACGTCA+TGG - chr5.1:43508092-43508111 MS.gene65360:CDS 40.0%
CTCACATATTTAACTGGGTG+TGG + chr5.1:43508399-43508418 None:intergenic 40.0%
CTGATATGAGAACGAATCGT+TGG + chr5.1:43508020-43508039 None:intergenic 40.0%
GACCAGAGATAGAAAATGCA+GGG - chr5.1:43507743-43507762 MS.gene65360:intron 40.0%
GGTCATGAGGACCAAAATTA+AGG - chr5.1:43507455-43507474 MS.gene65360:intron 40.0%
GTGGCAAATGGCAATTTATC+TGG + chr5.1:43507407-43507426 None:intergenic 40.0%
GTTATGGTCTCAATCGATCA+TGG + chr5.1:43506913-43506932 None:intergenic 40.0%
TCTTGCCTACTTCATTGTCA+AGG - chr5.1:43508517-43508536 MS.gene65360:CDS 40.0%
TGTGGGAGAAGTTCTTCAAA+GGG - chr5.1:43506310-43506329 MS.gene65360:CDS 40.0%
TTCATGGTTCCTCCAAAAAG+AGG - chr5.1:43507173-43507192 MS.gene65360:intron 40.0%
TTGTCTGAGTTTGATCGTAG+GGG + chr5.1:43508169-43508188 None:intergenic 40.0%
! AACATGTGTCCTCTTTTTGG+AGG + chr5.1:43507185-43507204 None:intergenic 40.0%
! GCGTTTTTGTTCTTGGTTAG+AGG - chr5.1:43506267-43506286 MS.gene65360:CDS 40.0%
!!! AAAACTTTTTTGAGGGGGAG+AGG - chr5.1:43506986-43507005 MS.gene65360:intron 40.0%
AACCAACCATGACCGTAGTA+TGG - chr5.1:43507088-43507107 MS.gene65360:intron 45.0%
AACTGAGGATATGTAGCTGG+TGG - chr5.1:43507487-43507506 MS.gene65360:intron 45.0%
AGAGTCCTGTGTTTCATGGT+AGG - chr5.1:43506394-43506413 MS.gene65360:CDS 45.0%
AGCCTCAATGGTAGTCATGA+AGG - chr5.1:43506123-43506142 MS.gene65360:CDS 45.0%
ATACTACGGTCATGGTTGGT+TGG + chr5.1:43507089-43507108 None:intergenic 45.0%
CCACTGAAGTAGCTTACAAC+TGG - chr5.1:43507009-43507028 MS.gene65360:intron 45.0%
CCAGTTGTAAGCTACTTCAG+TGG + chr5.1:43507012-43507031 None:intergenic 45.0%
CTAGAAGGAGAAGGTAAGTG+AGG + chr5.1:43505975-43505994 None:intergenic 45.0%
CTAGCATGTGGTATCACACT+TGG - chr5.1:43505991-43506010 MS.gene65360:CDS 45.0%
CTGTGGGAGAAGTTCTTCAA+AGG - chr5.1:43506309-43506328 MS.gene65360:CDS 45.0%
CTTCAACTAGGTAGGTCATG+AGG - chr5.1:43507442-43507461 MS.gene65360:intron 45.0%
CTTCATTGTCAAGGCTCATG+AGG - chr5.1:43508526-43508545 MS.gene65360:CDS 45.0%
GTAACCAGGTGAGTTAGTAC+CGG - chr5.1:43506807-43506826 MS.gene65360:intron 45.0%
GTATTCGATTCCAGCCTCAA+TGG - chr5.1:43506111-43506130 MS.gene65360:CDS 45.0%
GTGTGATACCACATGCTAGA+AGG + chr5.1:43505990-43506009 None:intergenic 45.0%
TACCACATGCTAGAAGGAGA+AGG + chr5.1:43505984-43506003 None:intergenic 45.0%
TACCTTCTCCTTCTAGCATG+TGG - chr5.1:43505979-43505998 MS.gene65360:CDS 45.0%
TGGTAGGAGAATTCCCAGTA+AGG - chr5.1:43506410-43506429 MS.gene65360:CDS 45.0%
TTCATGACTACCATTGAGGC+TGG + chr5.1:43506124-43506143 None:intergenic 45.0%
TTCCATACTACGGTCATGGT+TGG + chr5.1:43507093-43507112 None:intergenic 45.0%
TTGAAGAACTTCTCCCACAG+AGG + chr5.1:43506309-43506328 None:intergenic 45.0%
! GAAGGTGGCGTTTTTGTTCT+TGG - chr5.1:43506260-43506279 MS.gene65360:CDS 45.0%
! TACTACGGTCATGGTTGGTT+GGG + chr5.1:43507088-43507107 None:intergenic 45.0%
! TCCCCTGCATTTTCTATCTC+TGG + chr5.1:43507748-43507767 None:intergenic 45.0%
!! ACTTGGGTTGACTGGTCAAA+GGG - chr5.1:43508369-43508388 MS.gene65360:CDS 45.0%
!! GAAGTTTGACTTGGGTTGAC+TGG - chr5.1:43508361-43508380 MS.gene65360:CDS 45.0%
!!! CAATATTTTTTAATTATTAT+AGG + chr5.1:43506784-43506803 None:intergenic 5.0%
ACCTTCGGAACTCGATCGAA+AGG + chr5.1:43506246-43506265 None:intergenic 50.0%
CCATGACCGTAGTATGGAAG+AGG - chr5.1:43507094-43507113 MS.gene65360:intron 50.0%
CCTCTTCCATACTACGGTCA+TGG + chr5.1:43507097-43507116 None:intergenic 50.0%
GTGGAGAGTCCTGTGTTTCA+TGG - chr5.1:43506390-43506409 MS.gene65360:CDS 50.0%
GTTTCCGGTACTAACTCACC+TGG + chr5.1:43506814-43506833 None:intergenic 50.0%
TACGACCAGGCAAGTTCAGT+TGG - chr5.1:43508117-43508136 MS.gene65360:CDS 50.0%
TCCTTTCGATCGAGTTCCGA+AGG - chr5.1:43506242-43506261 MS.gene65360:CDS 50.0%
TTTCGATCGAGTTCCGAAGG+TGG - chr5.1:43506245-43506264 MS.gene65360:CDS 50.0%
! GCTCATGAGGTTTGCTCCAA+AGG - chr5.1:43508539-43508558 MS.gene65360:CDS 50.0%
! GTTGGTTGGGTGGTTTGTGA+GGG + chr5.1:43507075-43507094 None:intergenic 50.0%
! TTGGTTGGGTGGTTTGTGAG+GGG + chr5.1:43507074-43507093 None:intergenic 50.0%
!! GACTTGGGTTGACTGGTCAA+AGG - chr5.1:43508368-43508387 MS.gene65360:CDS 50.0%
CAAGTTCAGTTGGACGCGGA+CGG - chr5.1:43508127-43508146 MS.gene65360:CDS 55.0%
CAGGCAAGTTCAGTTGGACG+CGG - chr5.1:43508123-43508142 MS.gene65360:CDS 55.0%
CTACGTCATGGCTTACGACC+AGG - chr5.1:43508104-43508123 MS.gene65360:CDS 55.0%
GGTTAGAGGTCCTGTGCCTT+TGG - chr5.1:43506281-43506300 MS.gene65360:CDS 55.0%
TTCTCCCACAGAGGAGCCAA+AGG + chr5.1:43506300-43506319 None:intergenic 55.0%
! GGTTGGTTGGGTGGTTTGTG+AGG + chr5.1:43507076-43507095 None:intergenic 55.0%
! GTTTGCTAGCAGGCGACGTT+CGG + chr5.1:43507977-43507996 None:intergenic 55.0%
! TACGGTCATGGTTGGTTGGG+TGG + chr5.1:43507085-43507104 None:intergenic 55.0%
! TGGGTTGACTGGTCAAAGGG+TGG - chr5.1:43508372-43508391 MS.gene65360:CDS 55.0%
! TGTGCCTTTGGCTCCTCTGT+GGG - chr5.1:43506293-43506312 MS.gene65360:CDS 55.0%
CGCGTCCAACTGAACTTGCC+TGG + chr5.1:43508125-43508144 None:intergenic 60.0%
! CACAGAGGAGCCAAAGGCAC+AGG + chr5.1:43506294-43506313 None:intergenic 60.0%
! CGAGAAGCGCGTTTGCTAGC+AGG + chr5.1:43507987-43508006 None:intergenic 60.0%
! CTGTGCCTTTGGCTCCTCTG+TGG - chr5.1:43506292-43506311 MS.gene65360:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 43505892 43508575 43505892 ID=MS.gene65360
chr5.1 mRNA 43505892 43508575 43505892 ID=MS.gene65360.t1;Parent=MS.gene65360
chr5.1 exon 43508036 43508575 43508036 ID=MS.gene65360.t1.exon1;Parent=MS.gene65360.t1
chr5.1 CDS 43508036 43508575 43508036 ID=cds.MS.gene65360.t1;Parent=MS.gene65360.t1
chr5.1 exon 43505892 43506527 43505892 ID=MS.gene65360.t1.exon2;Parent=MS.gene65360.t1
chr5.1 CDS 43505892 43506527 43505892 ID=cds.MS.gene65360.t1;Parent=MS.gene65360.t1
Gene Sequence

>MS.gene65360

ATGAAGAACTCAAATAATCAACAATCATCATTAAACACTATTTCAAGAAATTTCAACTCTCATCTTCATCTTATTCGTTTCCTCACTTACCTTCTCCTTCTAGCATGTGGTATCACACTTGGAATCATCATCAGTTTCTATCTTAAAAGCTTAAATTTTAATCTTCATTTCACTCAATTATCACAAAAAACAACGCTTTTACCGTTACGCCAACCAATAGTATTCGATTCCAGCCTCAATGGTAGTCATGAAGGATTGAAGAAATTTATTGAACCATCTCAAGTTGTACATGATTTGAGTGATGAAGAATTGTTATGGAGAGCTTCATTGACTCCTAAGATAGATGAATATCCTTTCGATCGAGTTCCGAAGGTGGCGTTTTTGTTCTTGGTTAGAGGTCCTGTGCCTTTGGCTCCTCTGTGGGAGAAGTTCTTCAAAGGGCATAAAGGGTATTACTCAATTTACGTGCACTCGAATCCATCTTACAATGGTTCTGAAGTGGAGAGTCCTGTGTTTCATGGTAGGAGAATTCCCAGTAAGGTTAGTGAATTTTTTTTATCTTGATATGGTTAACTTATGAATGAAAATTGTCATTGGTTCAATGAAGATTTAGATTGCTTAGTAGAAAATCAAAGAACAAATAAAGTAAGGGCATAACTAAGATCAAGTTTTTTACAATTTTATTACCATGTTTTCAAATCAAACAATTCTATGTGGATAGATAATATTTTCATTGAAAGAGTATACACATGTTTTAAATATGGTTGATAATTTAATGATAATTATATAAAAATTTGATTAAATTTGTGTGCCTAAGTAAATTGAATTAAGAGGAAAAGGGGGAGAATTAAATGAAGCAGAGCAGAGGGAGACAAATAGAGCTTTATGTCCTATAATAATTAAAAAATATTGAATGTAACCAGGTGAGTTAGTACCGGAAACACTTTCAATATGAAGTGTCGGTGTTTATTCAAAAAAAAATATGAAGTGTCGGTGTGACATGTACGTTTTAAGTTGGCCATGATCGATTGAGACCATAACTACCTTAACTAAGTGCCAATGTTTTTTTAATCTTGCCAAAAGAAAAGATATAAAAAACTTTTTTGAGGGGGAGAGGCCACTGAAGTAGCTTACAACTGGACTTCTCATATGTCGCTCATGTGTTATACTATTGGCACACCCCTCACAAACCACCCAACCAACCATGACCGTAGTATGGAAGAGGATAGTTTTCAGTTTGAATATCAGCTTATTATTAAAAAAAATGTCTGTATATAGCATTTCATGGTTCCTCCAAAAAGAGGACACATGTTAGTTTGCACAAAAAATTAAGCAGATAAACGAGCCAGTATTCCATAGTCAAAATACTATTAGCACACTCACAAACTAGCAAAATGTAGAATTAATTTTTTTATTATTTTTTAAATAATTGAAAGAATAAAGGTTGAATTGATATTTTGTAAGTGTGCCTAAAAGATTTATACATGGTTTTGTGACTTTACAAGAATAATCCCAGATAAATTGCCATTTGCCACCTCATAGATTATAGTCTTCAACTAGGTAGGTCATGAGGACCAAAATTAAGGCACAGTATTAACTGAGGATATGTAGCTGGTGGAAGTTTGGTGAAACATTACTAATAAATTCATTATTTGATATTTCCTAATTAGTTATCAATGCTATGCTCCATCTAAATTCCTACCACCTATTAATGAAATTCTAGTGTTGTGTAGGGAGGGACCAATATGTAGAGTCTAAAGAGTGTTATGCAACCACGAAATGTGTAAAAATAACTAAATGGATTAGTAAATTTCATTCACTGCCATTTTGAATTAAGCTTTCAATGAAACAGACCAGAGATAGAAAATGCAGGGGAAAAATCTATAGAACTTAACCCAATTAGTGATCATGAGAAAATTAATTTCCTTTATGGTTTATTGTATACTTGTTTCAAATCTTAATTTTTAGGAAATTGCTAATAAATAGACTTCTAGTTCCATCAATTTGTTTCAAAATGTAATCATAACCTTTCATCTGATATAATGCAGAAAGTAGAATGGGGAAAATTCAACATGATTGAAGCCGAACGTCGCCTGCTAGCAAACGCGCTTCTCGATTTCTCAAACCAACGATTCGTTCTCATATCAGAATCATGCATACCACTCTTCAACTTCTCAACAGTCTACTCTTATTTAATGAACTCAACAAAAAGCTACGTCATGGCTTACGACCAGGCAAGTTCAGTTGGACGCGGACGGTATAAAATTAAAATGTCCCCTACGATCAAACTCAGACAATGGAGAAAAGGGTCACAATGGTTTGAAATGGACAGAAATCTTGCGTTAGAAGTAATATCAGACCGAACATATTACCCGGTTTTCAGAAAATATTGCAATGGTTCATGTTATGCTGATGAGCATTATTTGCCAACTTTTGTTAGCATTAAGTTTTGGAAGAGCAATACAAATAGAAGTTTGACTTGGGTTGACTGGTCAAAGGGTGGACCACACCCAGTTAAATATGTGAGACCAGAGGTTACTTGTGAGTTTTTGGAGAATTTGAGGAATCAAACATGTAAGTATAATGGAAATAGCACAAATGTTTGTTATTTGTTTGCTAGGAAATTCTTGCCTACTTCATTGTCAAGGCTCATGAGGTTTGCTCCAAAGGTCATGCACTTATAA

Protein sequence

>MS.gene65360.t1

MKNSNNQQSSLNTISRNFNSHLHLIRFLTYLLLLACGITLGIIISFYLKSLNFNLHFTQLSQKTTLLPLRQPIVFDSSLNGSHEGLKKFIEPSQVVHDLSDEELLWRASLTPKIDEYPFDRVPKVAFLFLVRGPVPLAPLWEKFFKGHKGYYSIYVHSNPSYNGSEVESPVFHGRRIPSKKVEWGKFNMIEAERRLLANALLDFSNQRFVLISESCIPLFNFSTVYSYLMNSTKSYVMAYDQASSVGRGRYKIKMSPTIKLRQWRKGSQWFEMDRNLALEVISDRTYYPVFRKYCNGSCYADEHYLPTFVSIKFWKSNTNRSLTWVDWSKGGPHPVKYVRPEVTCEFLENLRNQTCKYNGNSTNVCYLFARKFLPTSLSRLMRFAPKVMHL