Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65786.t1 | XP_003598625.1 | 96.8 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 2.00E-111 | 412.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65786.t1 | Q9LH89 | 45.5 | 121 | 56 | 2 | 116 | 226 | 251 | 371 | 3.6e-24 | 113.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65786.t1 | G7IYV7 | 96.8 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 1.5e-111 | 412.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055701 | MS.gene65786 | 0.829596 | 4.71E-55 | -1.69E-46 |
| MS.gene05761 | MS.gene65786 | 0.827054 | 1.93E-54 | -1.69E-46 |
| MS.gene059511 | MS.gene65786 | 0.810254 | 1.26E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene65786 | 0.806906 | 6.55E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene65786 | 0.805675 | 1.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65786.t1 | MTR_3g017490 | 97.183 | 284 | 7 | 1 | 1 | 284 | 1 | 283 | 0.0 | 561 |
| MS.gene65786.t1 | MTR_8g038440 | 51.880 | 266 | 104 | 3 | 2 | 264 | 13 | 257 | 6.14e-86 | 258 |
| MS.gene65786.t1 | MTR_7g090230 | 63.816 | 152 | 54 | 1 | 111 | 261 | 273 | 424 | 2.18e-69 | 221 |
| MS.gene65786.t1 | MTR_1g051180 | 60.000 | 160 | 55 | 1 | 111 | 261 | 204 | 363 | 8.26e-67 | 212 |
| MS.gene65786.t1 | MTR_5g083110 | 53.061 | 147 | 67 | 2 | 115 | 261 | 94 | 238 | 4.54e-49 | 163 |
| MS.gene65786.t1 | MTR_3g465550 | 49.324 | 148 | 72 | 3 | 111 | 257 | 83 | 228 | 1.37e-46 | 156 |
| MS.gene65786.t1 | MTR_5g072400 | 41.711 | 187 | 100 | 3 | 82 | 261 | 69 | 253 | 9.98e-46 | 155 |
| MS.gene65786.t1 | MTR_3g071510 | 51.389 | 144 | 68 | 2 | 118 | 261 | 93 | 234 | 2.81e-45 | 153 |
| MS.gene65786.t1 | MTR_7g104720 | 45.946 | 148 | 78 | 1 | 114 | 261 | 259 | 404 | 1.14e-40 | 145 |
| MS.gene65786.t1 | MTR_1g090400 | 46.309 | 149 | 78 | 2 | 114 | 262 | 223 | 369 | 6.98e-40 | 142 |
| MS.gene65786.t1 | MTR_7g106500 | 45.513 | 156 | 74 | 3 | 116 | 262 | 126 | 279 | 8.52e-40 | 140 |
| MS.gene65786.t1 | MTR_8g099665 | 45.223 | 157 | 77 | 3 | 113 | 261 | 212 | 367 | 1.47e-36 | 134 |
| MS.gene65786.t1 | MTR_8g106900 | 45.161 | 155 | 80 | 2 | 113 | 262 | 120 | 274 | 2.27e-36 | 131 |
| MS.gene65786.t1 | MTR_7g010090 | 44.242 | 165 | 73 | 3 | 116 | 261 | 267 | 431 | 4.13e-35 | 131 |
| MS.gene65786.t1 | MTR_6g011640 | 41.618 | 173 | 81 | 6 | 109 | 261 | 224 | 396 | 1.14e-34 | 129 |
| MS.gene65786.t1 | MTR_3g030520 | 38.994 | 159 | 79 | 4 | 122 | 262 | 141 | 299 | 8.58e-25 | 101 |
| MS.gene65786.t1 | MTR_5g048870 | 36.893 | 103 | 60 | 2 | 103 | 200 | 54 | 156 | 1.12e-12 | 65.1 |
| MS.gene65786.t1 | MTR_7g079015 | 34.066 | 91 | 53 | 2 | 156 | 239 | 1 | 91 | 6.11e-11 | 58.5 |
| MS.gene65786.t1 | MTR_1g095960 | 34.483 | 87 | 50 | 2 | 160 | 239 | 32 | 118 | 8.04e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65786.t1 | AT5G13810 | 55.682 | 264 | 97 | 5 | 6 | 262 | 23 | 273 | 2.61e-95 | 282 |
| MS.gene65786.t1 | AT2G41330 | 55.828 | 163 | 70 | 2 | 101 | 261 | 239 | 401 | 8.25e-55 | 182 |
| MS.gene65786.t1 | AT3G57070 | 56.494 | 154 | 65 | 1 | 110 | 261 | 262 | 415 | 1.24e-54 | 182 |
| MS.gene65786.t1 | AT5G58530 | 45.000 | 200 | 94 | 5 | 76 | 262 | 70 | 266 | 7.22e-50 | 166 |
| MS.gene65786.t1 | AT5G39865 | 48.780 | 164 | 66 | 6 | 116 | 261 | 225 | 388 | 1.96e-42 | 150 |
| MS.gene65786.t1 | AT5G06470 | 41.618 | 173 | 86 | 4 | 102 | 262 | 70 | 239 | 2.12e-40 | 140 |
| MS.gene65786.t1 | AT3G28850 | 42.614 | 176 | 71 | 3 | 116 | 261 | 251 | 426 | 1.19e-38 | 140 |
| MS.gene65786.t1 | AT1G32760 | 49.689 | 161 | 73 | 4 | 110 | 262 | 154 | 314 | 2.05e-38 | 137 |
| MS.gene65786.t1 | AT4G10630 | 46.584 | 161 | 74 | 4 | 114 | 262 | 174 | 334 | 2.09e-38 | 138 |
| MS.gene65786.t1 | AT3G11773 | 46.479 | 142 | 73 | 3 | 121 | 262 | 12 | 150 | 4.31e-36 | 126 |
| MS.gene65786.t1 | AT5G03870 | 44.667 | 150 | 82 | 1 | 114 | 262 | 235 | 384 | 2.08e-35 | 131 |
| MS.gene65786.t1 | AT1G64500 | 43.421 | 152 | 78 | 3 | 118 | 261 | 214 | 365 | 3.12e-34 | 127 |
| MS.gene65786.t1 | AT5G01420 | 43.333 | 150 | 82 | 3 | 114 | 262 | 254 | 401 | 8.09e-32 | 122 |
| MS.gene65786.t1 | AT3G11773 | 47.321 | 112 | 56 | 3 | 151 | 262 | 92 | 200 | 5.36e-26 | 102 |
Find 63 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGGTTTAGGGTTT+GGG | 0.218316 | 3.2:+8827519 | MS.gene65786:CDS |
| TGTCCTTGTTGCGCCTGTTC+TGG | 0.268180 | 3.2:+8829689 | MS.gene65786:CDS |
| CCACGTGCGGCTTCGAAGTT+AGG | 0.339185 | 3.2:+8827352 | MS.gene65786:CDS |
| CTACCTCAAGTGTTCGTTAG+AGG | 0.363674 | 3.2:+8829440 | MS.gene65786:CDS |
| ATCAAATCTCTATTTGAAAC+TGG | 0.396457 | 3.2:+8829488 | MS.gene65786:CDS |
| ATGAAGCGGGGATGTTGTTC+CGG | 0.397804 | 3.2:+8827404 | MS.gene65786:CDS |
| TGCTTTCAGAAAAGAATTGC+AGG | 0.412980 | 3.2:+8827570 | MS.gene65786:CDS |
| CTTCGAAGCCGCACGTGGTT+CGG | 0.416891 | 3.2:-8827347 | None:intergenic |
| TTGAAACTGGTGAATTGAAA+AGG | 0.417136 | 3.2:+8829501 | MS.gene65786:CDS |
| TTAGGTCAGAAGCCGCGTTC+TGG | 0.417750 | 3.2:+8827370 | MS.gene65786:CDS |
| TGATGAAAGAGATGTTTCTA+TGG | 0.421139 | 3.2:+8827543 | MS.gene65786:CDS |
| TCAGAAGCCGCGTTCTGGTT+CGG | 0.442103 | 3.2:+8827375 | MS.gene65786:CDS |
| GCCGCACGTGGTTCGGAAGA+AGG | 0.443209 | 3.2:-8827340 | None:intergenic |
| AACAAAGCCAGGCTTCATCT+TGG | 0.443746 | 3.2:-8829540 | None:intergenic |
| GGGGATGTTGTTCCGGTTGG+CGG | 0.448187 | 3.2:+8827411 | MS.gene65786:CDS |
| ACAAAGCCAGGCTTCATCTT+GGG | 0.451900 | 3.2:-8829539 | None:intergenic |
| AAGCAAATTCTACGGTTCAA+TGG | 0.458730 | 3.2:+8827201 | MS.gene65786:CDS |
| AGGGATAAGAAGAACGTTTG+AGG | 0.460025 | 3.2:+8827474 | MS.gene65786:CDS |
| CAACTTTCGCAAACAAAGCC+AGG | 0.474869 | 3.2:-8829551 | None:intergenic |
| ACAGAACATCATTCCAGAAC+AGG | 0.474894 | 3.2:-8829702 | None:intergenic |
| ATTGTTGCTGCAGTCTGTGA+TGG | 0.475824 | 3.2:+8829400 | MS.gene65786:intron |
| GCGAAAGTTGTGGCGATGCT+AGG | 0.476444 | 3.2:+8829564 | MS.gene65786:CDS |
| ATCATCTCTACGTGGAAGAA+TGG | 0.484954 | 3.2:+8827234 | MS.gene65786:CDS |
| CGGTCTAGAAACTCGTTGAA+TGG | 0.485509 | 3.2:-8827166 | None:intergenic |
| GTAGAATTTGCTTAACGAAC+CGG | 0.485771 | 3.2:-8827191 | None:intergenic |
| GATCATCAGCATCCGCCAAC+CGG | 0.490872 | 3.2:-8827423 | None:intergenic |
| AGCGGGGATGTTGTTCCGGT+TGG | 0.502502 | 3.2:+8827408 | MS.gene65786:CDS |
| AGGGTTGTTGAAAAGATGCT+TGG | 0.515319 | 3.2:+8829640 | MS.gene65786:CDS |
| ACCTTCTTCCGAACCACGTG+CGG | 0.515628 | 3.2:+8827339 | MS.gene65786:CDS |
| TGCTTGGAGTGCAATGAGAA+TGG | 0.530091 | 3.2:+8829656 | MS.gene65786:CDS |
| AACGAGTTTCTAGACCGGTC+CGG | 0.530614 | 3.2:+8827172 | MS.gene65786:CDS |
| GTGAGAATTGCAGTGGGAGT+AGG | 0.533959 | 3.2:+8829597 | MS.gene65786:CDS |
| GGCTTTGTTTGCGAAAGTTG+TGG | 0.541080 | 3.2:+8829554 | MS.gene65786:CDS |
| ATTTGCTTAACGAACCGGAC+CGG | 0.549932 | 3.2:-8827186 | None:intergenic |
| GGTTCGGAAGAAGATGAAGC+GGG | 0.564755 | 3.2:+8827391 | MS.gene65786:CDS |
| GGTTGGCGGATGCTGATGAT+CGG | 0.565323 | 3.2:+8827425 | MS.gene65786:CDS |
| TGTATTTGACGAGTTTGAGA+GGG | 0.565359 | 3.2:+8827455 | MS.gene65786:CDS |
| GTTCTGTGATTATGAAAATG+AGG | 0.571372 | 3.2:+8829718 | MS.gene65786:CDS |
| GTTAGAGGAAAGTACATTGG+TGG | 0.572212 | 3.2:+8829455 | MS.gene65786:CDS |
| TTGTTGCTGCAGTCTGTGAT+GGG | 0.579187 | 3.2:+8829401 | MS.gene65786:intron |
| GGTTCGTTAAGCAAATTCTA+CGG | 0.596106 | 3.2:+8827193 | MS.gene65786:CDS |
| TTCGTTAGAGGAAAGTACAT+TGG | 0.597968 | 3.2:+8829452 | MS.gene65786:CDS |
| TCTTCTTCCGAACCAGAACG+CGG | 0.600432 | 3.2:-8827382 | None:intergenic |
| ACGTGTGCATCGTGTTTGAT+CGG | 0.601162 | 3.2:-8827120 | None:intergenic |
| GTGTATTTGACGAGTTTGAG+AGG | 0.605361 | 3.2:+8827454 | MS.gene65786:CDS |
| CTCCCACTGCAATTCTCACA+AGG | 0.613824 | 3.2:-8829593 | None:intergenic |
| TACCTTGTGAGAATTGCAGT+GGG | 0.615095 | 3.2:+8829591 | MS.gene65786:CDS |
| ATACCTTGTGAGAATTGCAG+TGG | 0.616068 | 3.2:+8829590 | MS.gene65786:CDS |
| AAATTATTCGATGAGGACGA+AGG | 0.616456 | 3.2:+8829620 | MS.gene65786:CDS |
| TGGTTCGGAAGAAGATGAAG+CGG | 0.617340 | 3.2:+8827390 | MS.gene65786:CDS |
| AATTATTCGATGAGGACGAA+GGG | 0.626444 | 3.2:+8829621 | MS.gene65786:CDS |
| ATTCCAGAACAGGCGCAACA+AGG | 0.629811 | 3.2:-8829692 | None:intergenic |
| GGATGCTGATGATCGGATTG+TGG | 0.634382 | 3.2:+8827432 | MS.gene65786:CDS |
| CCTAACTTCGAAGCCGCACG+TGG | 0.643711 | 3.2:-8827352 | None:intergenic |
| GAATTGAAAAGGATTCTCGA+AGG | 0.645661 | 3.2:+8829512 | MS.gene65786:CDS |
| CATTCAACGAGTTTCTAGAC+CGG | 0.645792 | 3.2:+8827167 | MS.gene65786:CDS |
| GCTGCAGTCTGTGATGGGTG+AGG | 0.646757 | 3.2:+8829406 | MS.gene65786:intron |
| TTCTGTGATTATGAAAATGA+GGG | 0.648644 | 3.2:+8829719 | MS.gene65786:CDS |
| TTTCCTCTAACGAACACTTG+AGG | 0.658788 | 3.2:-8829443 | None:intergenic |
| GCAATGAGAATGGACTTGTA+AGG | 0.683440 | 3.2:+8829666 | MS.gene65786:CDS |
| GTTCGGAAGAAGATGAAGCG+GGG | 0.708724 | 3.2:+8827392 | MS.gene65786:CDS |
| GAGTAGGAAATTATTCGATG+AGG | 0.731014 | 3.2:+8829613 | MS.gene65786:CDS |
| TCAATGAAATCATCTCTACG+TGG | 0.778466 | 3.2:+8827226 | MS.gene65786:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATTATGTTCTATAT+TGG | - | chr3.2:8829322-8829341 | None:intergenic | 10.0% |
| !!! | TTTTTTTTACTAGAAAAAAA+GGG | - | chr3.2:8828780-8828799 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTACTAGAAAAAA+AGG | - | chr3.2:8828781-8828800 | None:intergenic | 10.0% |
| !! | AATATAATCATACAAAATAC+TGG | - | chr3.2:8827791-8827810 | None:intergenic | 15.0% |
| !! | CTTCAAAAAAAAAAAACATA+TGG | + | chr3.2:8828706-8828725 | MS.gene65786:intron | 15.0% |
| !!! | CATATGTTTTTTTTTTTTGA+AGG | - | chr3.2:8828708-8828727 | None:intergenic | 15.0% |
| !! | AAAACATATGGTGAAAAATA+AGG | + | chr3.2:8828718-8828737 | MS.gene65786:intron | 20.0% |
| !! | AAACATATGGTGAAAAATAA+GGG | + | chr3.2:8828719-8828738 | MS.gene65786:intron | 20.0% |
| !! | AATAGAAAAGCTATGAATTT+AGG | + | chr3.2:8829080-8829099 | MS.gene65786:intron | 20.0% |
| !! | AGACCAAAAAAAAAAATCAT+GGG | - | chr3.2:8828611-8828630 | None:intergenic | 20.0% |
| !! | ATGAATTTAGGAAATTGATT+TGG | + | chr3.2:8829092-8829111 | MS.gene65786:intron | 20.0% |
| !!! | AATTTTTACCGATTTAAAGA+TGG | + | chr3.2:8828665-8828684 | MS.gene65786:intron | 20.0% |
| !!! | ATACCCATGATTTTTTTTTT+TGG | + | chr3.2:8828605-8828624 | MS.gene65786:intron | 20.0% |
| ! | AAAAAGAACAAGAAGAAAGA+AGG | - | chr3.2:8827603-8827622 | None:intergenic | 25.0% |
| ! | AAACATGCATTAAATATGTC+TGG | - | chr3.2:8827635-8827654 | None:intergenic | 25.0% |
| ! | AAGAAGACCAGAAAAAAAAT+TGG | - | chr3.2:8828808-8828827 | None:intergenic | 25.0% |
| ! | AATTCAGCAAAATCAATATG+TGG | - | chr3.2:8828969-8828988 | None:intergenic | 25.0% |
| ! | ACTTTAAATGCAGAATTTAG+AGG | - | chr3.2:8828907-8828926 | None:intergenic | 25.0% |
| ! | AGAAGACCAGAAAAAAAATT+GGG | - | chr3.2:8828807-8828826 | None:intergenic | 25.0% |
| ! | ATAAGATCATGAATACATGT+TGG | + | chr3.2:8827908-8827927 | MS.gene65786:intron | 25.0% |
| ! | ATTCAGCAAAATCAATATGT+GGG | - | chr3.2:8828968-8828987 | None:intergenic | 25.0% |
| ! | CAGACCAAAAAAAAAAATCA+TGG | - | chr3.2:8828612-8828631 | None:intergenic | 25.0% |
| ! | CATTGTAACCATCTTTAAAT+CGG | - | chr3.2:8828676-8828695 | None:intergenic | 25.0% |
| ! | TTACTAGAAAAAAAGGGAAT+TGG | - | chr3.2:8828774-8828793 | None:intergenic | 25.0% |
| ! | TTCTGTGATTATGAAAATGA+GGG | + | chr3.2:8829719-8829738 | MS.gene65786:CDS | 25.0% |
| ! | TTGGAATATCATCAAATATC+TGG | + | chr3.2:8827927-8827946 | MS.gene65786:intron | 25.0% |
| !! | ATCAAATCTCTATTTGAAAC+TGG | + | chr3.2:8829488-8829507 | MS.gene65786:CDS | 25.0% |
| !! | TTTTCCAAATAATGCAAACA+AGG | - | chr3.2:8828305-8828324 | None:intergenic | 25.0% |
| !!! | AAATGTCCCAATTTTTTTTC+TGG | + | chr3.2:8828798-8828817 | MS.gene65786:intron | 25.0% |
| !!! | CATGATTTTTTTTTTTGGTC+TGG | + | chr3.2:8828610-8828629 | MS.gene65786:intron | 25.0% |
| !!! | CTGTTAAGATGATTTTGAAA+GGG | + | chr3.2:8827506-8827525 | MS.gene65786:CDS | 25.0% |
| AACGTGATAATACTGAATCA+CGG | - | chr3.2:8827685-8827704 | None:intergenic | 30.0% | |
| AGAGCAAAACATTTACTTCA+AGG | - | chr3.2:8828472-8828491 | None:intergenic | 30.0% | |
| ATACGATAGATATGTCAAAG+TGG | + | chr3.2:8827765-8827784 | MS.gene65786:intron | 30.0% | |
| ATATGACAATGTTCATATCG+AGG | + | chr3.2:8829035-8829054 | MS.gene65786:intron | 30.0% | |
| GGCAAAATTAAGACAAAACA+TGG | - | chr3.2:8829375-8829394 | None:intergenic | 30.0% | |
| GTTCTGTGATTATGAAAATG+AGG | + | chr3.2:8829718-8829737 | MS.gene65786:CDS | 30.0% | |
| TTAAGACAAAACATGGACAT+AGG | - | chr3.2:8829368-8829387 | None:intergenic | 30.0% | |
| TTGAAACTGGTGAATTGAAA+AGG | + | chr3.2:8829501-8829520 | MS.gene65786:CDS | 30.0% | |
| TTTCCAAATACTCCACATTA+TGG | + | chr3.2:8828549-8828568 | MS.gene65786:intron | 30.0% | |
| ! | GCTGTTAAGATGATTTTGAA+AGG | + | chr3.2:8827505-8827524 | MS.gene65786:CDS | 30.0% |
| ! | TGATGAAAGAGATGTTTCTA+TGG | + | chr3.2:8827543-8827562 | MS.gene65786:CDS | 30.0% |
| !! | AGATGATTTTGAAAGGGTTT+AGG | + | chr3.2:8827512-8827531 | MS.gene65786:CDS | 30.0% |
| !! | CATTTTAATCTACCTCTTCT+TGG | + | chr3.2:8828340-8828359 | MS.gene65786:intron | 30.0% |
| !! | CGATTTGATTTTAGTAGACA+GGG | + | chr3.2:8828829-8828848 | MS.gene65786:intron | 30.0% |
| !! | GATGATTTTGAAAGGGTTTA+GGG | + | chr3.2:8827513-8827532 | MS.gene65786:CDS | 30.0% |
| !! | GTTTTAAATTGTTCTTGTGG+TGG | + | chr3.2:8828851-8828870 | MS.gene65786:intron | 30.0% |
| !!! | AGGGTTTTAAATTGTTCTTG+TGG | + | chr3.2:8828848-8828867 | MS.gene65786:intron | 30.0% |
| AAATTATTCGATGAGGACGA+AGG | + | chr3.2:8829620-8829639 | MS.gene65786:CDS | 35.0% | |
| AACATGCATCAAGAAAATCG+AGG | - | chr3.2:8827735-8827754 | None:intergenic | 35.0% | |
| AAGCAAATTCTACGGTTCAA+TGG | + | chr3.2:8827201-8827220 | MS.gene65786:CDS | 35.0% | |
| AATTATTCGATGAGGACGAA+GGG | + | chr3.2:8829621-8829640 | MS.gene65786:CDS | 35.0% | |
| ACATGCATCAAGAAAATCGA+GGG | - | chr3.2:8827734-8827753 | None:intergenic | 35.0% | |
| ACTCTCATGTCGAGTTTATT+AGG | - | chr3.2:8828012-8828031 | None:intergenic | 35.0% | |
| AGAACATCACTACCATAATG+TGG | - | chr3.2:8828564-8828583 | None:intergenic | 35.0% | |
| CAAAACATTTACTTCAAGGC+TGG | - | chr3.2:8828468-8828487 | None:intergenic | 35.0% | |
| CACTGAATTTGGGTCTATTA+TGG | - | chr3.2:8828071-8828090 | None:intergenic | 35.0% | |
| CCAAATAATGCAAACAAGGT+AGG | - | chr3.2:8828301-8828320 | None:intergenic | 35.0% | |
| GAACAAGAAGAAAGAAGGTT+TGG | - | chr3.2:8827598-8827617 | None:intergenic | 35.0% | |
| GAATTGAAAAGGATTCTCGA+AGG | + | chr3.2:8829512-8829531 | MS.gene65786:CDS | 35.0% | |
| GAGTAGGAAATTATTCGATG+AGG | + | chr3.2:8829613-8829632 | MS.gene65786:CDS | 35.0% | |
| GGTTCGTTAAGCAAATTCTA+CGG | + | chr3.2:8827193-8827212 | MS.gene65786:CDS | 35.0% | |
| GTAGCTGATTACTTCAACAA+AGG | - | chr3.2:8828106-8828125 | None:intergenic | 35.0% | |
| TCAATGAAATCATCTCTACG+TGG | + | chr3.2:8827226-8827245 | MS.gene65786:CDS | 35.0% | |
| TGCTTTCAGAAAAGAATTGC+AGG | + | chr3.2:8827570-8827589 | MS.gene65786:CDS | 35.0% | |
| TGTATTTGACGAGTTTGAGA+GGG | + | chr3.2:8827455-8827474 | MS.gene65786:CDS | 35.0% | |
| TTGTCATATTCGACCAAGAT+TGG | - | chr3.2:8829024-8829043 | None:intergenic | 35.0% | |
| ! | AGAGTATTATTCTGCGTTGA+AGG | + | chr3.2:8828418-8828437 | MS.gene65786:intron | 35.0% |
| ! | CCTACCTTGTTTGCATTATT+TGG | + | chr3.2:8828298-8828317 | MS.gene65786:intron | 35.0% |
| ! | CTACCATAATGTGGAGTATT+TGG | - | chr3.2:8828555-8828574 | None:intergenic | 35.0% |
| ! | GTAGAATTTGCTTAACGAAC+CGG | - | chr3.2:8827194-8827213 | None:intergenic | 35.0% |
| ! | TTCGTTAGAGGAAAGTACAT+TGG | + | chr3.2:8829452-8829471 | MS.gene65786:CDS | 35.0% |
| ! | TTTGAAAGGGTTTAGGGTTT+GGG | + | chr3.2:8827519-8827538 | MS.gene65786:CDS | 35.0% |
| !! | ACTCACAAATGTTGATTTCG+AGG | - | chr3.2:8828143-8828162 | None:intergenic | 35.0% |
| !! | GCGATTTGATTTTAGTAGAC+AGG | + | chr3.2:8828828-8828847 | MS.gene65786:intron | 35.0% |
| !! | TACTCTTTCTAGCTTGAGTT+CGG | - | chr3.2:8828404-8828423 | None:intergenic | 35.0% |
| !! | TTTTGAAAGGGTTTAGGGTT+TGG | + | chr3.2:8827518-8827537 | MS.gene65786:CDS | 35.0% |
| !!! | TGAGCCACATAGTTTTAGAT+CGG | + | chr3.2:8828236-8828255 | MS.gene65786:intron | 35.0% |
| AACATTTACTTCAAGGCTGG+AGG | - | chr3.2:8828465-8828484 | None:intergenic | 40.0% | |
| AATCGCATGGTATAAACCCA+GGG | + | chr3.2:8828183-8828202 | MS.gene65786:intron | 40.0% | |
| AATGCAAACAAGGTAGGTCT+TGG | - | chr3.2:8828295-8828314 | None:intergenic | 40.0% | |
| ACAGAACATCATTCCAGAAC+AGG | - | chr3.2:8829705-8829724 | None:intergenic | 40.0% | |
| AGACTGCAGCAACAATTGAT+AGG | - | chr3.2:8829396-8829415 | None:intergenic | 40.0% | |
| AGGGATAAGAAGAACGTTTG+AGG | + | chr3.2:8827474-8827493 | MS.gene65786:CDS | 40.0% | |
| AGGGTTGTTGAAAAGATGCT+TGG | + | chr3.2:8829640-8829659 | MS.gene65786:CDS | 40.0% | |
| ATACCTTGTGAGAATTGCAG+TGG | + | chr3.2:8829590-8829609 | MS.gene65786:CDS | 40.0% | |
| ATATCTGTTGCCACAGTTTG+AGG | + | chr3.2:8828518-8828537 | MS.gene65786:intron | 40.0% | |
| ATCATCTCTACGTGGAAGAA+TGG | + | chr3.2:8827234-8827253 | MS.gene65786:CDS | 40.0% | |
| CTCATGTCGAGTTTATTAGG+AGG | - | chr3.2:8828009-8828028 | None:intergenic | 40.0% | |
| GATTACTTCAACAAAGGTGG+TGG | - | chr3.2:8828100-8828119 | None:intergenic | 40.0% | |
| GCTGATTACTTCAACAAAGG+TGG | - | chr3.2:8828103-8828122 | None:intergenic | 40.0% | |
| GTGGAGATGTCACTGAATTT+GGG | - | chr3.2:8828081-8828100 | None:intergenic | 40.0% | |
| GTGTATTTGACGAGTTTGAG+AGG | + | chr3.2:8827454-8827473 | MS.gene65786:CDS | 40.0% | |
| GTTTATACCATGCGATTCAG+TGG | - | chr3.2:8828180-8828199 | None:intergenic | 40.0% | |
| TACCTTGTGAGAATTGCAGT+GGG | + | chr3.2:8829591-8829610 | MS.gene65786:CDS | 40.0% | |
| TATTAGGAGGCAAGCAAATG+AGG | - | chr3.2:8827996-8828015 | None:intergenic | 40.0% | |
| TTTCCTCTAACGAACACTTG+AGG | - | chr3.2:8829446-8829465 | None:intergenic | 40.0% | |
| ! | AACCTTGAGTTGTCCAATCT+TGG | + | chr3.2:8829008-8829027 | MS.gene65786:intron | 40.0% |
| ! | ACGTCCGATCTAAAACTATG+TGG | - | chr3.2:8828243-8828262 | None:intergenic | 40.0% |
| ! | CATTCAACGAGTTTCTAGAC+CGG | + | chr3.2:8827167-8827186 | MS.gene65786:CDS | 40.0% |
| ! | CTGCATTTAAAGTTGTCACG+AGG | + | chr3.2:8828914-8828933 | MS.gene65786:intron | 40.0% |
| ! | GCAATGAGAATGGACTTGTA+AGG | + | chr3.2:8829666-8829685 | MS.gene65786:CDS | 40.0% |
| ! | GTTAGAGGAAAGTACATTGG+TGG | + | chr3.2:8829455-8829474 | MS.gene65786:CDS | 40.0% |
| ! | TGTGGAGTATTTGGAAAGCT+AGG | - | chr3.2:8828546-8828565 | None:intergenic | 40.0% |
| AACAAAGCCAGGCTTCATCT+TGG | - | chr3.2:8829543-8829562 | None:intergenic | 45.0% | |
| AAGCTAGGAACCTCAAACTG+TGG | - | chr3.2:8828531-8828550 | None:intergenic | 45.0% | |
| AAGTTGTCACGAGGTCTTGA+TGG | + | chr3.2:8828923-8828942 | MS.gene65786:intron | 45.0% | |
| ACAAAGCCAGGCTTCATCTT+GGG | - | chr3.2:8829542-8829561 | None:intergenic | 45.0% | |
| ACGTGTGCATCGTGTTTGAT+CGG | - | chr3.2:8827123-8827142 | None:intergenic | 45.0% | |
| AGATGGAGGAAACCAAGAAG+AGG | - | chr3.2:8828355-8828374 | None:intergenic | 45.0% | |
| ATGTGTATCAGAGACTCGGA+TGG | - | chr3.2:8828271-8828290 | None:intergenic | 45.0% | |
| ATTGTTGCTGCAGTCTGTGA+TGG | + | chr3.2:8829400-8829419 | MS.gene65786:intron | 45.0% | |
| ATTTGCTTAACGAACCGGAC+CGG | - | chr3.2:8827189-8827208 | None:intergenic | 45.0% | |
| CAACTTTCGCAAACAAAGCC+AGG | - | chr3.2:8829554-8829573 | None:intergenic | 45.0% | |
| CATGAATCCACTGAATCGCA+TGG | + | chr3.2:8828170-8828189 | MS.gene65786:intron | 45.0% | |
| CGGTCTAGAAACTCGTTGAA+TGG | - | chr3.2:8827169-8827188 | None:intergenic | 45.0% | |
| CTACCTCAAGTGTTCGTTAG+AGG | + | chr3.2:8829440-8829459 | MS.gene65786:CDS | 45.0% | |
| CTGGAAGCTAGTACTAGATG+TGG | + | chr3.2:8827946-8827965 | MS.gene65786:intron | 45.0% | |
| GAATCGCATGGTATAAACCC+AGG | + | chr3.2:8828182-8828201 | MS.gene65786:intron | 45.0% | |
| GACCAAGATTGGACAACTCA+AGG | - | chr3.2:8829013-8829032 | None:intergenic | 45.0% | |
| GGTGGAGATGTCACTGAATT+TGG | - | chr3.2:8828082-8828101 | None:intergenic | 45.0% | |
| TGCTTGGAGTGCAATGAGAA+TGG | + | chr3.2:8829656-8829675 | MS.gene65786:CDS | 45.0% | |
| TGGCATGTGTATCAGAGACT+CGG | - | chr3.2:8828275-8828294 | None:intergenic | 45.0% | |
| TGTGTATCAGAGACTCGGAT+GGG | - | chr3.2:8828270-8828289 | None:intergenic | 45.0% | |
| TTGTTGCTGCAGTCTGTGAT+GGG | + | chr3.2:8829401-8829420 | MS.gene65786:intron | 45.0% | |
| ! | AGTTTGCTCTGTCGATGTTG+GGG | - | chr3.2:8828212-8828231 | None:intergenic | 45.0% |
| ! | CAGTTTGCTCTGTCGATGTT+GGG | - | chr3.2:8828213-8828232 | None:intergenic | 45.0% |
| ! | GGTTGCTCATGTTCTAGCTA+AGG | - | chr3.2:8827975-8827994 | None:intergenic | 45.0% |
| ! | TGGTTCGGAAGAAGATGAAG+CGG | + | chr3.2:8827390-8827409 | MS.gene65786:CDS | 45.0% |
| !! | GGCTTTGTTTGCGAAAGTTG+TGG | + | chr3.2:8829554-8829573 | MS.gene65786:CDS | 45.0% |
| !! | TCTTTTGTTGTCGTCGTCGT+TGG | - | chr3.2:8827289-8827308 | None:intergenic | 45.0% |
| ATGAAGCGGGGATGTTGTTC+CGG | + | chr3.2:8827404-8827423 | MS.gene65786:CDS | 50.0% | |
| ATTCCAGAACAGGCGCAACA+AGG | - | chr3.2:8829695-8829714 | None:intergenic | 50.0% | |
| CCAACATCGACAGAGCAAAC+TGG | + | chr3.2:8828211-8828230 | MS.gene65786:intron | 50.0% | |
| CCATCTAGAAACGCCATTCC+CGG | + | chr3.2:8828369-8828388 | MS.gene65786:intron | 50.0% | |
| CTCCCACTGCAATTCTCACA+AGG | - | chr3.2:8829596-8829615 | None:intergenic | 50.0% | |
| GGATGCTGATGATCGGATTG+TGG | + | chr3.2:8827432-8827451 | MS.gene65786:CDS | 50.0% | |
| GGTTCGGAAGAAGATGAAGC+GGG | + | chr3.2:8827391-8827410 | MS.gene65786:CDS | 50.0% | |
| GTGAGAATTGCAGTGGGAGT+AGG | + | chr3.2:8829597-8829616 | MS.gene65786:CDS | 50.0% | |
| GTTCGGAAGAAGATGAAGCG+GGG | + | chr3.2:8827392-8827411 | MS.gene65786:CDS | 50.0% | |
| TCTTCTTCCGAACCAGAACG+CGG | - | chr3.2:8827385-8827404 | None:intergenic | 50.0% | |
| TTGAGTTCGGTTGACCACAC+CGG | - | chr3.2:8828391-8828410 | None:intergenic | 50.0% | |
| ! | AACGAGTTTCTAGACCGGTC+CGG | + | chr3.2:8827172-8827191 | MS.gene65786:CDS | 50.0% |
| ! | CCAGTTTGCTCTGTCGATGT+TGG | - | chr3.2:8828214-8828233 | None:intergenic | 50.0% |
| ! | GGAATGGCGTTTCTAGATGG+AGG | - | chr3.2:8828369-8828388 | None:intergenic | 50.0% |
| ! | GGTTTTCCCAAGATGAAGCC+TGG | + | chr3.2:8829533-8829552 | MS.gene65786:CDS | 50.0% |
| ACCTTCTTCCGAACCACGTG+CGG | + | chr3.2:8827339-8827358 | MS.gene65786:CDS | 55.0% | |
| GATCATCAGCATCCGCCAAC+CGG | - | chr3.2:8827426-8827445 | None:intergenic | 55.0% | |
| GCGAAAGTTGTGGCGATGCT+AGG | + | chr3.2:8829564-8829583 | MS.gene65786:CDS | 55.0% | |
| TAGAAACGCCATTCCCGGTG+TGG | + | chr3.2:8828374-8828393 | MS.gene65786:intron | 55.0% | |
| TGAGTTCGGTTGACCACACC+GGG | - | chr3.2:8828390-8828409 | None:intergenic | 55.0% | |
| TGTCCTTGTTGCGCCTGTTC+TGG | + | chr3.2:8829689-8829708 | MS.gene65786:CDS | 55.0% | |
| TTAGGTCAGAAGCCGCGTTC+TGG | + | chr3.2:8827370-8827389 | MS.gene65786:CDS | 55.0% | |
| TTGCTCTGTCGATGTTGGGG+AGG | - | chr3.2:8828209-8828228 | None:intergenic | 55.0% | |
| ! | CCGGGAATGGCGTTTCTAGA+TGG | - | chr3.2:8828372-8828391 | None:intergenic | 55.0% |
| ! | GGTTGGCGGATGCTGATGAT+CGG | + | chr3.2:8827425-8827444 | MS.gene65786:CDS | 55.0% |
| ! | TCAGAAGCCGCGTTCTGGTT+CGG | + | chr3.2:8827375-8827394 | MS.gene65786:CDS | 55.0% |
| AGCGGGGATGTTGTTCCGGT+TGG | + | chr3.2:8827408-8827427 | MS.gene65786:CDS | 60.0% | |
| CCACGTGCGGCTTCGAAGTT+AGG | + | chr3.2:8827352-8827371 | MS.gene65786:CDS | 60.0% | |
| CCTAACTTCGAAGCCGCACG+TGG | - | chr3.2:8827355-8827374 | None:intergenic | 60.0% | |
| CTTCGAAGCCGCACGTGGTT+CGG | - | chr3.2:8827350-8827369 | None:intergenic | 60.0% | |
| GGGGATGTTGTTCCGGTTGG+CGG | + | chr3.2:8827411-8827430 | MS.gene65786:CDS | 60.0% | |
| TCGGTTGACCACACCGGGAA+TGG | - | chr3.2:8828385-8828404 | None:intergenic | 60.0% | |
| !! | GCTGCAGTCTGTGATGGGTG+AGG | + | chr3.2:8829406-8829425 | MS.gene65786:intron | 60.0% |
| GTCGATGTTGGGGAGGCCCT+GGG | - | chr3.2:8828202-8828221 | None:intergenic | 65.0% | |
| TGTCGATGTTGGGGAGGCCC+TGG | - | chr3.2:8828203-8828222 | None:intergenic | 65.0% | |
| ! | GCCGCACGTGGTTCGGAAGA+AGG | - | chr3.2:8827343-8827362 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 8827097 | 8829772 | 8827097 | ID=MS.gene65786 |
| chr3.2 | mRNA | 8827097 | 8829772 | 8827097 | ID=MS.gene65786.t1;Parent=MS.gene65786 |
| chr3.2 | exon | 8827097 | 8827591 | 8827097 | ID=MS.gene65786.t1.exon1;Parent=MS.gene65786.t1 |
| chr3.2 | CDS | 8827097 | 8827591 | 8827097 | ID=cds.MS.gene65786.t1;Parent=MS.gene65786.t1 |
| chr3.2 | exon | 8829413 | 8829772 | 8829413 | ID=MS.gene65786.t1.exon2;Parent=MS.gene65786.t1 |
| chr3.2 | CDS | 8829413 | 8829772 | 8829413 | ID=cds.MS.gene65786.t1;Parent=MS.gene65786.t1 |
| Gene Sequence |
| Protein sequence |
