Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65816.t1 | RHN65795.1 | 79.5 | 396 | 78 | 1 | 1 | 393 | 46 | 441 | 8.00E-167 | 596.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65816.t1 | Q9S7T8 | 52.3 | 388 | 178 | 3 | 11 | 391 | 3 | 390 | 1.2e-107 | 391.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65816.t1 | A0A396IPH6 | 79.5 | 396 | 78 | 1 | 1 | 393 | 46 | 441 | 5.8e-167 | 596.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene65816 | 0.831651 | 1.48E-55 | -1.69E-46 |
| MS.gene050611 | MS.gene65816 | 0.825897 | 3.65E-54 | -1.69E-46 |
| MS.gene052447 | MS.gene65816 | 0.807523 | 4.85E-50 | -1.69E-46 |
| MS.gene054175 | MS.gene65816 | 0.80085 | 1.19E-48 | -1.69E-46 |
| MS.gene058515 | MS.gene65816 | 0.812414 | 4.29E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene65816 | PPI |
| MS.gene65816 | MS.gene045585 | PPI |
| MS.gene65816 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene65816 | PPI |
| MS.gene031697 | MS.gene65816 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65816.t1 | MTR_3g018740 | 81.088 | 386 | 70 | 1 | 11 | 393 | 3 | 388 | 0.0 | 612 |
| MS.gene65816.t1 | MTR_3g101010 | 70.984 | 386 | 106 | 2 | 11 | 391 | 3 | 387 | 0.0 | 511 |
| MS.gene65816.t1 | MTR_8g027395 | 67.176 | 393 | 123 | 4 | 3 | 391 | 5 | 395 | 5.58e-179 | 503 |
| MS.gene65816.t1 | MTR_2g045980 | 67.692 | 390 | 115 | 5 | 11 | 393 | 3 | 388 | 6.33e-177 | 498 |
| MS.gene65816.t1 | MTR_4g045707 | 65.535 | 383 | 128 | 2 | 12 | 391 | 5 | 386 | 9.94e-174 | 490 |
| MS.gene65816.t1 | MTR_2g046030 | 65.897 | 390 | 122 | 4 | 11 | 393 | 3 | 388 | 1.38e-173 | 489 |
| MS.gene65816.t1 | MTR_8g027420 | 66.580 | 383 | 113 | 4 | 11 | 391 | 4 | 373 | 1.92e-170 | 481 |
| MS.gene65816.t1 | MTR_3g101030 | 64.232 | 397 | 116 | 6 | 18 | 391 | 34 | 427 | 3.07e-167 | 475 |
| MS.gene65816.t1 | MTR_3g101180 | 63.544 | 395 | 126 | 6 | 13 | 391 | 6 | 398 | 5.57e-167 | 473 |
| MS.gene65816.t1 | MTR_8g461160 | 64.103 | 390 | 130 | 4 | 13 | 393 | 6 | 394 | 4.96e-165 | 468 |
| MS.gene65816.t1 | MTR_7g451890 | 59.649 | 399 | 151 | 3 | 3 | 392 | 4 | 401 | 1.59e-164 | 467 |
| MS.gene65816.t1 | MTR_3g048000 | 62.730 | 381 | 121 | 4 | 14 | 391 | 28 | 390 | 9.74e-164 | 464 |
| MS.gene65816.t1 | MTR_7g050810 | 60.250 | 400 | 146 | 4 | 5 | 392 | 5 | 403 | 1.99e-163 | 464 |
| MS.gene65816.t1 | MTR_4g088535 | 65.796 | 383 | 111 | 5 | 8 | 388 | 2 | 366 | 5.42e-162 | 460 |
| MS.gene65816.t1 | MTR_7g047780 | 60.401 | 399 | 148 | 4 | 3 | 392 | 4 | 401 | 1.13e-161 | 460 |
| MS.gene65816.t1 | MTR_3g101130 | 61.240 | 387 | 137 | 4 | 13 | 391 | 6 | 387 | 4.29e-159 | 453 |
| MS.gene65816.t1 | MTR_7g050750 | 59.439 | 392 | 149 | 3 | 10 | 392 | 5 | 395 | 1.77e-158 | 451 |
| MS.gene65816.t1 | MTR_4g088525 | 64.266 | 361 | 127 | 2 | 32 | 391 | 8 | 367 | 7.62e-158 | 449 |
| MS.gene65816.t1 | MTR_3g015620 | 61.954 | 389 | 114 | 5 | 13 | 392 | 16 | 379 | 1.06e-149 | 429 |
| MS.gene65816.t1 | MTR_3g101050 | 63.446 | 383 | 115 | 7 | 16 | 391 | 32 | 396 | 8.81e-146 | 419 |
| MS.gene65816.t1 | MTR_3g102920 | 56.201 | 379 | 122 | 6 | 21 | 391 | 66 | 408 | 1.33e-127 | 374 |
| MS.gene65816.t1 | MTR_3g101190 | 54.593 | 381 | 100 | 6 | 11 | 391 | 3 | 310 | 4.13e-126 | 366 |
| MS.gene65816.t1 | MTR_3g018747 | 71.648 | 261 | 56 | 2 | 137 | 393 | 9 | 255 | 1.47e-122 | 355 |
| MS.gene65816.t1 | MTR_3g101200 | 51.777 | 394 | 157 | 5 | 5 | 391 | 23 | 390 | 1.68e-119 | 352 |
| MS.gene65816.t1 | MTR_7g050830 | 52.923 | 325 | 120 | 3 | 3 | 305 | 6 | 319 | 2.16e-110 | 327 |
| MS.gene65816.t1 | MTR_3g100995 | 64.822 | 253 | 82 | 2 | 144 | 392 | 14 | 263 | 6.04e-110 | 323 |
| MS.gene65816.t1 | MTR_3g100010 | 55.128 | 312 | 92 | 3 | 36 | 314 | 40 | 336 | 2.54e-102 | 306 |
| MS.gene65816.t1 | MTR_3g015760 | 61.011 | 277 | 98 | 3 | 122 | 392 | 8 | 280 | 8.09e-102 | 303 |
| MS.gene65816.t1 | MTR_3g111160 | 67.453 | 212 | 62 | 2 | 185 | 391 | 9 | 218 | 1.35e-90 | 272 |
| MS.gene65816.t1 | MTR_3g100520 | 62.037 | 216 | 71 | 3 | 178 | 391 | 1 | 207 | 1.26e-83 | 254 |
| MS.gene65816.t1 | MTR_3g114310 | 41.582 | 392 | 210 | 11 | 14 | 390 | 20 | 407 | 1.83e-81 | 256 |
| MS.gene65816.t1 | MTR_3g101110 | 58.475 | 236 | 64 | 3 | 140 | 367 | 71 | 280 | 6.76e-80 | 247 |
| MS.gene65816.t1 | MTR_2g046410 | 58.824 | 238 | 79 | 5 | 163 | 393 | 124 | 349 | 8.69e-80 | 249 |
| MS.gene65816.t1 | MTR_3g099970 | 59.391 | 197 | 62 | 2 | 137 | 333 | 20 | 198 | 2.50e-71 | 222 |
| MS.gene65816.t1 | MTR_3g111150 | 62.500 | 176 | 42 | 1 | 15 | 190 | 1 | 152 | 2.90e-67 | 211 |
| MS.gene65816.t1 | MTR_3g101150 | 65.190 | 158 | 45 | 2 | 243 | 391 | 1 | 157 | 1.01e-61 | 196 |
| MS.gene65816.t1 | MTR_3g102870 | 58.182 | 165 | 63 | 2 | 200 | 359 | 1 | 164 | 7.83e-57 | 184 |
| MS.gene65816.t1 | MTR_3g101020 | 53.226 | 186 | 56 | 2 | 211 | 392 | 1 | 159 | 1.34e-53 | 175 |
| MS.gene65816.t1 | MTR_3g100990 | 73.600 | 125 | 33 | 0 | 13 | 137 | 5 | 129 | 9.62e-53 | 183 |
| MS.gene65816.t1 | MTR_4g093550 | 64.773 | 88 | 31 | 0 | 9 | 96 | 2 | 89 | 3.17e-27 | 103 |
| MS.gene65816.t1 | MTR_6g046890 | 61.644 | 73 | 23 | 1 | 32 | 99 | 18 | 90 | 1.27e-18 | 82.0 |
| MS.gene65816.t1 | MTR_3g101140 | 58.108 | 74 | 24 | 2 | 324 | 391 | 42 | 114 | 1.05e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65816.t1 | AT1G47710 | 52.320 | 388 | 178 | 3 | 11 | 391 | 3 | 390 | 4.31e-139 | 402 |
| MS.gene65816.t1 | AT1G47710 | 52.320 | 388 | 178 | 3 | 11 | 391 | 30 | 417 | 1.81e-138 | 401 |
| MS.gene65816.t1 | AT3G45220 | 48.593 | 391 | 187 | 7 | 11 | 390 | 3 | 390 | 6.63e-122 | 358 |
| MS.gene65816.t1 | AT2G25240 | 48.446 | 386 | 187 | 6 | 11 | 390 | 3 | 382 | 9.89e-115 | 340 |
| MS.gene65816.t1 | AT2G26390 | 47.716 | 394 | 182 | 7 | 11 | 390 | 3 | 386 | 3.89e-114 | 338 |
| MS.gene65816.t1 | AT2G14540 | 41.814 | 397 | 198 | 7 | 4 | 390 | 24 | 397 | 2.42e-93 | 286 |
| MS.gene65816.t1 | AT1G64030 | 42.199 | 391 | 193 | 6 | 11 | 390 | 3 | 371 | 2.04e-92 | 283 |
| MS.gene65816.t1 | AT1G62170 | 39.642 | 391 | 202 | 6 | 11 | 390 | 64 | 431 | 4.99e-89 | 276 |
| MS.gene65816.t1 | AT2G35580 | 42.199 | 391 | 193 | 8 | 11 | 390 | 3 | 371 | 1.09e-88 | 273 |
| MS.gene65816.t1 | AT1G62170 | 36.730 | 422 | 200 | 7 | 13 | 390 | 66 | 464 | 7.20e-82 | 258 |
| MS.gene65816.t1 | AT1G64010 | 43.318 | 217 | 97 | 4 | 178 | 390 | 1 | 195 | 5.93e-52 | 172 |
| MS.gene65816.t1 | AT1G64010 | 43.564 | 202 | 88 | 4 | 193 | 390 | 2 | 181 | 8.68e-46 | 156 |
| MS.gene65816.t1 | AT1G62160 | 39.205 | 176 | 86 | 5 | 217 | 390 | 62 | 218 | 7.94e-30 | 115 |
| MS.gene65816.t1 | AT1G63280 | 47.458 | 118 | 58 | 2 | 134 | 249 | 5 | 120 | 1.86e-26 | 102 |
| MS.gene65816.t1 | AT1G51330 | 46.903 | 113 | 55 | 2 | 135 | 243 | 29 | 140 | 1.42e-21 | 92.0 |
| MS.gene65816.t1 | AT1G64020 | 32.143 | 112 | 73 | 3 | 18 | 127 | 10 | 120 | 1.57e-12 | 64.3 |
Find 77 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.2:+9220988 | MS.gene65816:CDS |
| TGATTAAAGAAGTGAATTTA+AGG | 0.222374 | 3.2:+9220887 | MS.gene65816:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.2:-9220930 | None:intergenic |
| GTTGAGATCATCGGTGGATT+TGG | 0.293645 | 3.2:-9220262 | None:intergenic |
| GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 3.2:-9220421 | None:intergenic |
| CAATGCTAACAGTCCATCTT+TGG | 0.352985 | 3.2:-9221214 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.378765 | 3.2:-9220383 | None:intergenic |
| CTTCGTCTTCTTTATAAGAA+AGG | 0.383719 | 3.2:+9221147 | MS.gene65816:CDS |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3.2:+9221351 | MS.gene65816:CDS |
| TTCTTTCGAGAACAGATGTT+TGG | 0.401374 | 3.2:-9220130 | None:intergenic |
| AACAGTCCATCTTTGGCATC+TGG | 0.409162 | 3.2:-9221207 | None:intergenic |
| TGCCGAGGGAAACATTTGTT+TGG | 0.416643 | 3.2:-9220104 | None:intergenic |
| GATTAAAGAAGTGAATTTAA+GGG | 0.417007 | 3.2:+9220888 | MS.gene65816:CDS |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3.2:+9221344 | MS.gene65816:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.2:-9220382 | None:intergenic |
| TTTCTTCCAGATGCCAAAGA+TGG | 0.454297 | 3.2:+9221201 | MS.gene65816:CDS |
| GTTAAGCTATCAACTGATCT+TGG | 0.455204 | 3.2:-9220952 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.2:+9221471 | MS.gene65816:CDS |
| GTTAGCATTGGTGGAGAAGT+TGG | 0.459448 | 3.2:+9221227 | MS.gene65816:CDS |
| AGATGGACTGTTAGCATTGG+TGG | 0.461266 | 3.2:+9221218 | MS.gene65816:CDS |
| GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 3.2:+9221498 | MS.gene65816:CDS |
| CTCTCAGACGGAGCTTTCAC+TGG | 0.464320 | 3.2:+9220315 | MS.gene65816:CDS |
| TGACTGAGCTTCCATTCAAA+AGG | 0.469619 | 3.2:-9221062 | None:intergenic |
| GGAATCAGACATTTGATGTA+AGG | 0.469790 | 3.2:+9221016 | MS.gene65816:CDS |
| CAGACGGAGCTTTCACTGGC+GGG | 0.477961 | 3.2:+9220319 | MS.gene65816:CDS |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.2:-9221567 | None:intergenic |
| CATCCCCTCGGTGGTCATGA+AGG | 0.485289 | 3.2:-9221091 | None:intergenic |
| CAATGATACTTAGCACAACT+TGG | 0.487762 | 3.2:-9220188 | None:intergenic |
| AGACTATAGTGTAGTAAGTC+AGG | 0.490539 | 3.2:-9221258 | None:intergenic |
| CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3.2:+9221579 | MS.gene65816:CDS |
| TATCATTGCGGCTGGCTCTG+AGG | 0.502501 | 3.2:+9220203 | MS.gene65816:CDS |
| CTCTGTTGATTTCATAACCA+AGG | 0.503875 | 3.2:+9220443 | MS.gene65816:CDS |
| ATCATTGCGGCTGGCTCTGA+GGG | 0.505022 | 3.2:+9220204 | MS.gene65816:CDS |
| CACTCTACTTTAAAGGAGCA+TGG | 0.505591 | 3.2:+9220995 | MS.gene65816:CDS |
| TCATCTACTTCTACTTCAGC+AGG | 0.509971 | 3.2:-9221285 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.2:-9221566 | None:intergenic |
| TGCTAAGATCATTGATCAAG+AGG | 0.517318 | 3.2:-9221633 | None:intergenic |
| GTTAAACCTCCAGGAGTGAA+AGG | 0.523766 | 3.2:-9221384 | None:intergenic |
| GTTTCTATCGTCCTCTCAGA+CGG | 0.525011 | 3.2:+9220303 | MS.gene65816:CDS |
| TTTGGTTGGTGATTGATTCG+TGG | 0.536866 | 3.2:-9220086 | None:intergenic |
| ATCAATAAACTGCATCCCCT+CGG | 0.537857 | 3.2:-9221103 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.2:-9221440 | None:intergenic |
| GTGCTAAGTATCATTGCGGC+TGG | 0.566527 | 3.2:+9220195 | MS.gene65816:CDS |
| TCAGACGGAGCTTTCACTGG+CGG | 0.567635 | 3.2:+9220318 | MS.gene65816:CDS |
| AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3.2:-9220949 | None:intergenic |
| GAGGGAAACATTTGTTTGGT+TGG | 0.569951 | 3.2:-9220100 | None:intergenic |
| ATCCCCTCGGTGGTCATGAA+GGG | 0.571981 | 3.2:-9221090 | None:intergenic |
| AACCAAACAAATGTTTCCCT+CGG | 0.575261 | 3.2:+9220102 | MS.gene65816:CDS |
| GTCAAGAAGTTGTTGTTGTG+TGG | 0.577841 | 3.2:-9220229 | None:intergenic |
| TGCATTAGCAAAGATGAGGC+GGG | 0.588872 | 3.2:-9220974 | None:intergenic |
| TTTGAATGGAAGCTCAGTCA+AGG | 0.589562 | 3.2:+9221065 | MS.gene65816:CDS |
| AACAAATGTTTCCCTCGGCA+TGG | 0.592617 | 3.2:+9220107 | MS.gene65816:CDS |
| GGTGAGGTTGTTGAGATCAT+CGG | 0.593607 | 3.2:-9220271 | None:intergenic |
| TCAAGAAGTTGTTGTTGTGT+GGG | 0.594865 | 3.2:-9220228 | None:intergenic |
| ACAGATGTTTGGCCATGCCG+AGG | 0.599139 | 3.2:-9220119 | None:intergenic |
| CAGATGTTTGGCCATGCCGA+GGG | 0.601831 | 3.2:-9220118 | None:intergenic |
| GTTCCCTTCATGACCACCGA+GGG | 0.602185 | 3.2:+9221087 | MS.gene65816:CDS |
| AGCACAACTTGGAGCAACAA+TGG | 0.608333 | 3.2:-9220177 | None:intergenic |
| GACGATAGAAACAAGGTGAG+AGG | 0.614687 | 3.2:-9220292 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3.2:+9221356 | MS.gene65816:CDS |
| CTGAGAGGACGATAGAAACA+AGG | 0.615824 | 3.2:-9220299 | None:intergenic |
| GAGGTTGTTGAGATCATCGG+TGG | 0.618595 | 3.2:-9220268 | None:intergenic |
| GTGCATTAGCAAAGATGAGG+CGG | 0.619571 | 3.2:-9220975 | None:intergenic |
| GATCATCGGTGGATTTGGAA+CGG | 0.619697 | 3.2:-9220257 | None:intergenic |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.2:-9221563 | None:intergenic |
| CAGTGAAAGCTCCGTCTGAG+AGG | 0.641389 | 3.2:-9220314 | None:intergenic |
| AGAGTGCATTAGCAAAGATG+AGG | 0.641780 | 3.2:-9220978 | None:intergenic |
| CAAAGATGGACTGTTAGCAT+TGG | 0.645848 | 3.2:+9221215 | MS.gene65816:CDS |
| CATCGGTGGATTTGGAACGG+AGG | 0.663201 | 3.2:-9220254 | None:intergenic |
| AATAAACTGCATCCCCTCGG+TGG | 0.668287 | 3.2:-9221100 | None:intergenic |
| TAGAAACAAGGTGAGAGGTG+AGG | 0.682352 | 3.2:-9220287 | None:intergenic |
| CTTGGTTATGAAATCAACAG+AGG | 0.695380 | 3.2:-9220442 | None:intergenic |
| ATACACCATCAACAAAAGAG+AGG | 0.697514 | 3.2:-9220347 | None:intergenic |
| CCATCAACAAAAGAGAGGCG+AGG | 0.704628 | 3.2:-9220342 | None:intergenic |
| AGTTGTGCTAAGTATCATTG+CGG | 0.711501 | 3.2:+9220191 | MS.gene65816:CDS |
| TTCCCTTCATGACCACCGAG+GGG | 0.716157 | 3.2:+9221088 | MS.gene65816:CDS |
| GGTTCCCTTCATGACCACCG+AGG | 0.739875 | 3.2:+9221086 | MS.gene65816:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATGTAAATTAATTTA+AGG | + | chr3.2:9220562-9220581 | MS.gene65816:intron | 10.0% |
| !! | GTGAAAAAAAAAAAAAAAAA+GGG | - | chr3.2:9220485-9220504 | None:intergenic | 10.0% |
| !! | TGTGAAAAAAAAAAAAAAAA+AGG | - | chr3.2:9220486-9220505 | None:intergenic | 10.0% |
| !! | TTTCATGTAAATTAATTTAA+GGG | + | chr3.2:9220563-9220582 | MS.gene65816:intron | 10.0% |
| !!! | TGTTTTTATTTTATTTTTGA+TGG | - | chr3.2:9220528-9220547 | None:intergenic | 10.0% |
| !!! | ACTGATTTTTAAATTTGATA+TGG | + | chr3.2:9220846-9220865 | MS.gene65816:intron | 15.0% |
| !! | CAAAAAAATCTATAGTACTA+AGG | + | chr3.2:9220684-9220703 | MS.gene65816:intron | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | chr3.2:9221443-9221462 | None:intergenic | 20.0% |
| !! | GATTAAAGAAGTGAATTTAA+GGG | + | chr3.2:9220888-9220907 | MS.gene65816:CDS | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+AGG | + | chr3.2:9220887-9220906 | MS.gene65816:CDS | 20.0% |
| !!! | TACTATAGATTTTTTTGAAG+AGG | - | chr3.2:9220681-9220700 | None:intergenic | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | chr3.2:9221321-9221340 | None:intergenic | 20.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.2:9221569-9221588 | None:intergenic | 25.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | - | chr3.2:9220424-9220443 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.2:9221570-9221589 | None:intergenic | 25.0% |
| ! | TGATGCTAGAAAACAATAAA+GGG | - | chr3.2:9220726-9220745 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.2:9221471-9221490 | MS.gene65816:CDS | 25.0% |
| ! | TTCTTTAATCAGTGTAGAAT+TGG | - | chr3.2:9220617-9220636 | None:intergenic | 25.0% |
| ! | TTGATGCTAGAAAACAATAA+AGG | - | chr3.2:9220727-9220746 | None:intergenic | 25.0% |
| !! | AGCATAAGAAAAGCTTTTAT+TGG | - | chr3.2:9220785-9220804 | None:intergenic | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.2:9221051-9221070 | MS.gene65816:CDS | 25.0% |
| CTTCGTCTTCTTTATAAGAA+AGG | + | chr3.2:9221147-9221166 | MS.gene65816:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.2:9220933-9220952 | None:intergenic | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.2:9221566-9221585 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | + | chr3.2:9221344-9221363 | MS.gene65816:CDS | 30.0% | |
| AACCAAACAAATGTTTCCCT+CGG | + | chr3.2:9220102-9220121 | MS.gene65816:CDS | 35.0% | |
| AGACTATAGTGTAGTAAGTC+AGG | - | chr3.2:9221261-9221280 | None:intergenic | 35.0% | |
| AGTTGTGCTAAGTATCATTG+CGG | + | chr3.2:9220191-9220210 | MS.gene65816:CDS | 35.0% | |
| ATACACCATCAACAAAAGAG+AGG | - | chr3.2:9220350-9220369 | None:intergenic | 35.0% | |
| CAATGATACTTAGCACAACT+TGG | - | chr3.2:9220191-9220210 | None:intergenic | 35.0% | |
| CACTTGTCCAAAAAAGAGAA+TGG | - | chr3.2:9221607-9221626 | None:intergenic | 35.0% | |
| CAGTGTAGAATTGGTATACT+AGG | - | chr3.2:9220608-9220627 | None:intergenic | 35.0% | |
| CTTGGTTATGAAATCAACAG+AGG | - | chr3.2:9220445-9220464 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.2:9220988-9221007 | MS.gene65816:CDS | 35.0% | |
| GGAATCAGACATTTGATGTA+AGG | + | chr3.2:9221016-9221035 | MS.gene65816:CDS | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | - | chr3.2:9220955-9220974 | None:intergenic | 35.0% | |
| TCCTGGAGGTTTAACAAAAA+TGG | + | chr3.2:9221392-9221411 | MS.gene65816:CDS | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | + | chr3.2:9221351-9221370 | MS.gene65816:CDS | 35.0% | |
| TGCTAGAAAACAATAAAGGG+AGG | - | chr3.2:9220723-9220742 | None:intergenic | 35.0% | |
| TGGAGGTTTAACAAAAATGG+TGG | + | chr3.2:9221395-9221414 | MS.gene65816:CDS | 35.0% | |
| TTCTTTCGAGAACAGATGTT+TGG | - | chr3.2:9220133-9220152 | None:intergenic | 35.0% | |
| ! | GGAAGACAAGATTCTTTTGA+AGG | - | chr3.2:9220403-9220422 | None:intergenic | 35.0% |
| ! | TAACAAAGTGTTTCGTCACA+TGG | - | chr3.2:9220654-9220673 | None:intergenic | 35.0% |
| ! | TCAAGAAGTTGTTGTTGTGT+GGG | - | chr3.2:9220231-9220250 | None:intergenic | 35.0% |
| !! | ACCATTTTTGTTAAACCTCC+AGG | - | chr3.2:9221396-9221415 | None:intergenic | 35.0% |
| !! | CTCTGTTGATTTCATAACCA+AGG | + | chr3.2:9220443-9220462 | MS.gene65816:CDS | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | - | chr3.2:9220399-9220418 | None:intergenic | 35.0% |
| !!! | ACTGGAACCATTCTCTTTTT+TGG | + | chr3.2:9221597-9221616 | MS.gene65816:CDS | 35.0% |
| !!! | CTCTTTTGTTGATGGTGTAT+GGG | + | chr3.2:9220350-9220369 | MS.gene65816:CDS | 35.0% |
| !!! | TCTCTTTTGTTGATGGTGTA+TGG | + | chr3.2:9220349-9220368 | MS.gene65816:CDS | 35.0% |
| AAGCTATCAACTGATCTTGG+AGG | - | chr3.2:9220952-9220971 | None:intergenic | 40.0% | |
| AGAGTGCATTAGCAAAGATG+AGG | - | chr3.2:9220981-9221000 | None:intergenic | 40.0% | |
| ATCAATAAACTGCATCCCCT+CGG | - | chr3.2:9221106-9221125 | None:intergenic | 40.0% | |
| CAATGCTAACAGTCCATCTT+TGG | - | chr3.2:9221217-9221236 | None:intergenic | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | + | chr3.2:9221579-9221598 | MS.gene65816:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.2:9220385-9220404 | None:intergenic | 40.0% | |
| GAGGGAAACATTTGTTTGGT+TGG | - | chr3.2:9220103-9220122 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | chr3.2:9221356-9221375 | MS.gene65816:CDS | 40.0% | |
| TCATCTACTTCTACTTCAGC+AGG | - | chr3.2:9221288-9221307 | None:intergenic | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.2:9220386-9220405 | None:intergenic | 40.0% | |
| TGACTGAGCTTCCATTCAAA+AGG | - | chr3.2:9221065-9221084 | None:intergenic | 40.0% | |
| TTCGTCACATGGTACATACA+TGG | - | chr3.2:9220643-9220662 | None:intergenic | 40.0% | |
| TTTCTTCCAGATGCCAAAGA+TGG | + | chr3.2:9221201-9221220 | MS.gene65816:CDS | 40.0% | |
| TTTGAATGGAAGCTCAGTCA+AGG | + | chr3.2:9221065-9221084 | MS.gene65816:CDS | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.2:9220995-9221014 | MS.gene65816:CDS | 40.0% |
| ! | GTCAAGAAGTTGTTGTTGTG+TGG | - | chr3.2:9220232-9220251 | None:intergenic | 40.0% |
| !! | CAAAGATGGACTGTTAGCAT+TGG | + | chr3.2:9221215-9221234 | MS.gene65816:CDS | 40.0% |
| !! | TTTGGTTGGTGATTGATTCG+TGG | - | chr3.2:9220089-9220108 | None:intergenic | 40.0% |
| AACAAATGTTTCCCTCGGCA+TGG | + | chr3.2:9220107-9220126 | MS.gene65816:CDS | 45.0% | |
| AACAGTCCATCTTTGGCATC+TGG | - | chr3.2:9221210-9221229 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGCAACAA+TGG | - | chr3.2:9220180-9220199 | None:intergenic | 45.0% | |
| AGGGCTGAAAAAGAGACGAA+TGG | + | chr3.2:9220907-9220926 | MS.gene65816:CDS | 45.0% | |
| CTGAGAGGACGATAGAAACA+AGG | - | chr3.2:9220302-9220321 | None:intergenic | 45.0% | |
| GACGATAGAAACAAGGTGAG+AGG | - | chr3.2:9220295-9220314 | None:intergenic | 45.0% | |
| GAGCTGTGTAACACAAACCT+TGG | - | chr3.2:9220463-9220482 | None:intergenic | 45.0% | |
| GGTGAGGTTGTTGAGATCAT+CGG | - | chr3.2:9220274-9220293 | None:intergenic | 45.0% | |
| GTGCATTAGCAAAGATGAGG+CGG | - | chr3.2:9220978-9220997 | None:intergenic | 45.0% | |
| GTTAAACCTCCAGGAGTGAA+AGG | - | chr3.2:9221387-9221406 | None:intergenic | 45.0% | |
| GTTTCTATCGTCCTCTCAGA+CGG | + | chr3.2:9220303-9220322 | MS.gene65816:CDS | 45.0% | |
| TAGAAACAAGGTGAGAGGTG+AGG | - | chr3.2:9220290-9220309 | None:intergenic | 45.0% | |
| TGCATTAGCAAAGATGAGGC+GGG | - | chr3.2:9220977-9220996 | None:intergenic | 45.0% | |
| TGCCGAGGGAAACATTTGTT+TGG | - | chr3.2:9220107-9220126 | None:intergenic | 45.0% | |
| ! | GATCATCGGTGGATTTGGAA+CGG | - | chr3.2:9220260-9220279 | None:intergenic | 45.0% |
| ! | GTTGAGATCATCGGTGGATT+TGG | - | chr3.2:9220265-9220284 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.2:9221378-9221397 | MS.gene65816:CDS | 45.0% |
| !! | AGATGGACTGTTAGCATTGG+TGG | + | chr3.2:9221218-9221237 | MS.gene65816:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.2:9221375-9221394 | MS.gene65816:CDS | 45.0% |
| !! | GTTAGCATTGGTGGAGAAGT+TGG | + | chr3.2:9221227-9221246 | MS.gene65816:CDS | 45.0% |
| AATAAACTGCATCCCCTCGG+TGG | - | chr3.2:9221103-9221122 | None:intergenic | 50.0% | |
| CCATCAACAAAAGAGAGGCG+AGG | - | chr3.2:9220345-9220364 | None:intergenic | 50.0% | |
| GAGGTTGTTGAGATCATCGG+TGG | - | chr3.2:9220271-9220290 | None:intergenic | 50.0% | |
| GTGCTAAGTATCATTGCGGC+TGG | + | chr3.2:9220195-9220214 | MS.gene65816:CDS | 50.0% | |
| ! | CCTCGCCTCTCTTTTGTTGA+TGG | + | chr3.2:9220342-9220361 | MS.gene65816:CDS | 50.0% |
| ACAGATGTTTGGCCATGCCG+AGG | - | chr3.2:9220122-9220141 | None:intergenic | 55.0% | |
| ATCCCCTCGGTGGTCATGAA+GGG | - | chr3.2:9221093-9221112 | None:intergenic | 55.0% | |
| CAGATGTTTGGCCATGCCGA+GGG | - | chr3.2:9220121-9220140 | None:intergenic | 55.0% | |
| CAGTGAAAGCTCCGTCTGAG+AGG | - | chr3.2:9220317-9220336 | None:intergenic | 55.0% | |
| CTCTCAGACGGAGCTTTCAC+TGG | + | chr3.2:9220315-9220334 | MS.gene65816:CDS | 55.0% | |
| GTTCCCTTCATGACCACCGA+GGG | + | chr3.2:9221087-9221106 | MS.gene65816:CDS | 55.0% | |
| TCAGACGGAGCTTTCACTGG+CGG | + | chr3.2:9220318-9220337 | MS.gene65816:CDS | 55.0% | |
| TTCCCTTCATGACCACCGAG+GGG | + | chr3.2:9221088-9221107 | MS.gene65816:CDS | 55.0% | |
| ! | CATCGGTGGATTTGGAACGG+AGG | - | chr3.2:9220257-9220276 | None:intergenic | 55.0% |
| !! | ATCATTGCGGCTGGCTCTGA+GGG | + | chr3.2:9220204-9220223 | MS.gene65816:CDS | 55.0% |
| !! | TATCATTGCGGCTGGCTCTG+AGG | + | chr3.2:9220203-9220222 | MS.gene65816:CDS | 55.0% |
| CAGACGGAGCTTTCACTGGC+GGG | + | chr3.2:9220319-9220338 | MS.gene65816:CDS | 60.0% | |
| CATCCCCTCGGTGGTCATGA+AGG | - | chr3.2:9221094-9221113 | None:intergenic | 60.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | + | chr3.2:9221498-9221517 | MS.gene65816:CDS | 60.0% | |
| GGTTCCCTTCATGACCACCG+AGG | + | chr3.2:9221086-9221105 | MS.gene65816:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 9220054 | 9221647 | 9220054 | ID=MS.gene65816 |
| chr3.2 | mRNA | 9220054 | 9221647 | 9220054 | ID=MS.gene65816.t1;Parent=MS.gene65816 |
| chr3.2 | exon | 9220054 | 9220464 | 9220054 | ID=MS.gene65816.t1.exon1;Parent=MS.gene65816.t1 |
| chr3.2 | CDS | 9220054 | 9220464 | 9220054 | ID=cds.MS.gene65816.t1;Parent=MS.gene65816.t1 |
| chr3.2 | exon | 9220877 | 9221647 | 9220877 | ID=MS.gene65816.t1.exon2;Parent=MS.gene65816.t1 |
| chr3.2 | CDS | 9220877 | 9221647 | 9220877 | ID=cds.MS.gene65816.t1;Parent=MS.gene65816.t1 |
| Gene Sequence |
| Protein sequence |
