AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66440.t1 MTR_1g018510 97.481 397 10 0 78 474 332 728 0.0 797
MS.gene66440.t1 MTR_1g018510 82.474 97 13 1 6 102 1 93 1.14e-43 164
MS.gene66440.t1 MTR_3g102810 72.040 397 107 2 78 474 365 757 0.0 580
MS.gene66440.t1 MTR_3g102810 72.500 80 22 0 1 80 29 108 4.33e-34 136
MS.gene66440.t1 MTR_4g095360 61.461 397 141 5 78 473 371 756 6.31e-171 499
MS.gene66440.t1 MTR_4g095360 60.000 80 32 0 1 80 35 114 4.86e-26 112
MS.gene66440.t1 MTR_5g016120 57.789 398 155 5 78 473 376 762 4.43e-155 459
MS.gene66440.t1 MTR_5g016120 51.282 78 38 0 3 80 42 119 1.45e-16 83.2
MS.gene66440.t1 MTR_0047s0120 58.396 399 151 6 78 473 372 758 1.42e-151 450
MS.gene66440.t1 MTR_0047s0120 48.718 78 40 0 3 80 38 115 2.13e-15 79.3
MS.gene66440.t1 MTR_2g042130 50.873 401 178 6 78 474 390 775 5.25e-124 379
MS.gene66440.t1 MTR_4g125180 50.129 389 176 5 90 474 380 754 8.60e-122 373
MS.gene66440.t1 MTR_8g021130 50.384 391 175 7 91 474 399 777 1.81e-121 373
MS.gene66440.t1 MTR_7g075900 47.680 388 186 5 90 473 399 773 2.12e-112 349
MS.gene66440.t1 MTR_4g073540 46.699 409 199 6 66 469 371 765 3.20e-112 348
MS.gene66440.t1 MTR_4g073540 43.243 74 39 1 7 80 43 113 2.44e-12 69.7
MS.gene66440.t1 MTR_1g102350 46.891 386 190 5 90 473 406 778 1.81e-110 344
MS.gene66440.t1 MTR_1g102350 37.363 91 46 1 1 80 41 131 5.61e-15 78.2
MS.gene66440.t1 MTR_8g022870 47.692 390 184 7 90 469 394 773 2.53e-105 331
MS.gene66440.t1 MTR_8g022870 39.252 107 62 2 1 105 34 139 2.34e-15 79.3
MS.gene66440.t1 MTR_3g082200 43.194 382 196 6 90 469 267 629 1.14e-98 310
MS.gene66440.t1 MTR_3g082200 43.194 382 196 6 90 469 282 644 1.31e-98 310
MS.gene66440.t1 MTR_3g082200 43.194 382 196 6 90 469 405 767 1.79e-97 310
MS.gene66440.t1 MTR_4g103480 44.560 386 196 7 90 473 419 788 3.14e-97 310
MS.gene66440.t1 MTR_7g098070 42.895 380 197 5 90 469 400 759 6.90e-97 308
MS.gene66440.t1 MTR_5g055920 44.560 386 196 7 90 473 299 668 1.55e-96 305
MS.gene66440.t1 MTR_4g103450 44.041 386 198 7 90 473 376 745 2.01e-95 304
MS.gene66440.t1 MTR_4g103490 44.301 386 197 8 90 473 416 785 2.25e-95 305
MS.gene66440.t1 MTR_4g134320 42.520 381 199 5 90 470 404 764 1.98e-94 302
MS.gene66440.t1 MTR_7g098630 43.734 391 197 8 90 471 384 760 1.38e-92 300
MS.gene66440.t1 MTR_3g061110 41.818 385 199 7 90 469 386 750 2.66e-92 296
MS.gene66440.t1 MTR_4g103495 40.992 383 206 6 90 469 256 621 1.26e-90 288
MS.gene66440.t1 MTR_4g103430 41.818 385 206 6 90 472 401 769 3.62e-89 288
MS.gene66440.t1 MTR_5g011260 42.132 394 201 7 81 470 380 750 3.48e-87 283
MS.gene66440.t1 MTR_5g011270 41.772 395 201 8 81 470 380 750 2.56e-86 280
MS.gene66440.t1 MTR_5g085690 39.898 391 207 8 90 469 413 786 8.62e-85 277
MS.gene66440.t1 MTR_4g102400 42.239 393 193 10 90 474 389 755 9.69e-85 276
MS.gene66440.t1 MTR_5g011310 41.969 386 196 8 90 470 390 752 1.79e-84 275
MS.gene66440.t1 MTR_5g011280 41.414 396 202 10 81 470 383 754 1.57e-82 270
MS.gene66440.t1 MTR_4g103400 37.678 422 236 10 60 472 374 777 5.22e-82 270
MS.gene66440.t1 MTR_5g011340 41.710 386 197 8 90 470 387 749 5.50e-82 269
MS.gene66440.t1 MTR_5g011190 42.487 386 194 8 90 470 390 752 8.39e-82 268
MS.gene66440.t1 MTR_5g011320 40.640 406 206 8 77 470 362 744 4.63e-81 266
MS.gene66440.t1 MTR_5g011370 42.487 386 194 8 90 470 410 772 1.75e-80 265
MS.gene66440.t1 MTR_7g081750 39.423 416 209 11 79 469 398 795 9.32e-79 261
MS.gene66440.t1 MTR_4g103495 41.369 336 179 5 90 424 405 723 7.49e-78 258
MS.gene66440.t1 MTR_5g096750 39.481 385 202 9 90 470 406 763 4.27e-77 256
MS.gene66440.t1 MTR_8g072440 38.021 384 202 8 91 469 356 708 1.22e-76 254
MS.gene66440.t1 MTR_8g072440 38.021 384 202 8 91 469 398 750 2.70e-76 254
MS.gene66440.t1 MTR_5g025010 39.426 383 200 8 91 469 361 715 5.61e-75 249
MS.gene66440.t1 MTR_5g025010 39.426 383 200 8 91 469 393 747 7.56e-75 250
MS.gene66440.t1 MTR_2g018135 40.609 394 203 11 88 473 414 784 1.39e-74 250
MS.gene66440.t1 MTR_4g053630 39.687 383 207 7 90 469 289 650 3.86e-74 246
MS.gene66440.t1 MTR_7g081580 39.206 403 217 12 79 471 399 783 1.10e-73 248
MS.gene66440.t1 MTR_4g053630 39.948 383 206 8 90 469 366 727 1.43e-73 246
MS.gene66440.t1 MTR_7g081420 40.409 391 205 12 90 469 409 782 2.32e-73 246
MS.gene66440.t1 MTR_2g018125 39.642 391 206 10 91 473 417 785 4.20e-73 246
MS.gene66440.t1 MTR_8g083220 37.760 384 209 8 91 470 416 773 9.94e-71 239
MS.gene66440.t1 MTR_7g081500 38.018 434 230 14 51 469 371 780 2.19e-70 238
MS.gene66440.t1 MTR_7g481600 39.259 405 214 12 79 471 399 783 3.32e-70 238
MS.gene66440.t1 MTR_7g081380 37.089 426 209 13 79 469 403 804 4.29e-70 238
MS.gene66440.t1 MTR_4g053635 38.903 383 207 9 90 469 312 670 2.42e-68 231
MS.gene66440.t1 MTR_8g024390 38.155 401 226 13 78 469 368 755 4.00e-68 232
MS.gene66440.t1 MTR_8g024380 39.628 376 208 10 100 469 394 756 7.78e-68 231
MS.gene66440.t1 MTR_8g024380 34.737 95 47 1 1 80 34 128 3.27e-12 69.3
MS.gene66440.t1 MTR_8g042670 36.387 382 224 8 91 470 268 632 1.08e-66 226
MS.gene66440.t1 MTR_1g078110 38.338 373 213 9 100 469 393 751 1.90e-66 227
MS.gene66440.t1 MTR_1g078110 32.979 94 49 1 1 80 34 127 1.22e-11 67.4
MS.gene66440.t1 MTR_8g042670 36.387 382 224 8 91 470 392 756 5.17e-66 226
MS.gene66440.t1 MTR_2g049200 36.409 401 229 12 78 469 370 753 3.70e-65 224
MS.gene66440.t1 MTR_7g118080 37.568 370 216 8 103 469 396 753 1.35e-64 223
MS.gene66440.t1 MTR_8g042710 35.979 378 224 8 91 465 395 757 1.58e-63 219
MS.gene66440.t1 MTR_7g034380 37.533 381 204 10 91 469 341 689 2.22e-63 218
MS.gene66440.t1 MTR_8g024420 35.750 400 237 11 78 469 332 719 5.21e-63 218
MS.gene66440.t1 MTR_8g024420 35.632 87 49 1 1 80 1 87 2.27e-12 69.7
MS.gene66440.t1 MTR_8g005710 35.732 403 223 10 73 469 324 696 5.85e-63 217
MS.gene66440.t1 MTR_8g027260 38.253 332 182 6 139 469 340 649 7.06e-63 216
MS.gene66440.t1 MTR_3g104930 35.219 389 229 9 91 472 390 762 4.37e-62 216
MS.gene66440.t1 MTR_6g055570 36.364 385 202 11 94 469 377 727 2.17e-59 207
MS.gene66440.t1 MTR_1g006990 37.150 393 211 12 83 469 370 732 3.15e-59 207
MS.gene66440.t1 MTR_2g042650 36.141 368 205 8 108 469 297 640 1.50e-57 201
MS.gene66440.t1 MTR_3g464790 35.459 392 212 11 91 472 372 732 4.66e-57 201
MS.gene66440.t1 MTR_1g007030 36.480 392 206 13 91 469 369 730 1.38e-56 200
MS.gene66440.t1 MTR_3g114420 36.735 392 219 13 91 472 393 765 3.78e-56 199
MS.gene66440.t1 MTR_7g104200 36.815 383 210 13 91 469 385 739 2.25e-55 197
MS.gene66440.t1 MTR_8g079900 35.279 394 219 11 81 469 279 641 1.31e-54 193
MS.gene66440.t1 MTR_8g006680 35.864 382 199 13 94 469 379 720 2.28e-54 194
MS.gene66440.t1 MTR_8g005300 35.864 382 199 13 94 469 379 720 2.28e-54 194
MS.gene66440.t1 MTR_8g005640 35.864 382 199 13 94 469 379 720 2.28e-54 194
MS.gene66440.t1 MTR_8g079900 35.279 394 219 11 81 469 377 739 2.69e-54 194
MS.gene66440.t1 MTR_8g033150 34.726 383 218 11 90 469 369 722 9.84e-54 192
MS.gene66440.t1 MTR_8g024370 35.577 416 230 15 77 474 364 759 1.14e-53 192
MS.gene66440.t1 MTR_8g024370 37.647 85 48 1 1 80 33 117 9.99e-14 73.9
MS.gene66440.t1 MTR_8g033150 34.726 383 218 11 90 469 396 749 1.29e-53 192
MS.gene66440.t1 MTR_1g048110 35.185 378 202 15 100 469 386 728 1.86e-53 191
MS.gene66440.t1 MTR_7g079300 35.171 381 207 15 105 469 407 763 1.57e-52 189
MS.gene66440.t1 MTR_6g055410 33.421 380 202 9 94 469 377 709 7.37e-52 187
MS.gene66440.t1 MTR_7g075890 33.681 383 222 10 90 469 542 895 1.57e-51 187
MS.gene66440.t1 MTR_3g010080 33.943 383 213 13 94 469 380 729 4.65e-50 182
MS.gene66440.t1 MTR_1g079120 33.673 392 227 15 91 469 387 758 6.22e-50 182
MS.gene66440.t1 MTR_1g079120 36.782 87 47 1 1 79 38 124 2.22e-11 66.6
MS.gene66440.t1 MTR_7g079310 33.943 383 211 15 105 469 403 761 1.17e-49 181
MS.gene66440.t1 MTR_6g075370 40.000 275 140 8 188 460 424 675 2.27e-49 179
MS.gene66440.t1 MTR_2g044630 36.194 268 144 6 204 469 461 703 3.88e-41 156
MS.gene66440.t1 MTR_2g042640 33.333 330 181 8 108 434 318 611 5.40e-39 149
MS.gene66440.t1 MTR_4g126230 36.036 222 124 3 177 397 44 248 4.53e-37 137
MS.gene66440.t1 MTR_4g127480 34.551 301 150 13 188 469 539 811 1.15e-36 144
MS.gene66440.t1 MTR_3g114410 40.704 199 112 3 83 279 386 580 1.07e-34 137
MS.gene66440.t1 MTR_3g452290 34.483 261 123 6 210 469 353 566 1.13e-33 134
MS.gene66440.t1 MTR_3g451220 34.483 261 123 6 210 469 353 566 1.13e-33 134
MS.gene66440.t1 MTR_8g042710 39.899 198 114 3 91 285 395 590 2.00e-33 134
MS.gene66440.t1 MTR_3g114140 34.211 266 153 8 170 430 173 421 3.87e-33 130
MS.gene66440.t1 MTR_2g037850 30.676 414 223 19 93 469 425 811 1.76e-31 128
MS.gene66440.t1 MTR_8g089230 35.811 296 156 11 188 470 570 844 2.78e-31 128
MS.gene66440.t1 MTR_4g071560 39.801 201 106 4 91 282 328 522 1.31e-30 125
MS.gene66440.t1 MTR_2g070260 35.185 216 117 6 248 461 1 195 3.07e-30 117
MS.gene66440.t1 MTR_4g132620 31.212 330 178 13 74 371 417 729 3.26e-30 125
MS.gene66440.t1 MTR_5g044060 44.853 136 74 1 176 310 1 136 2.13e-29 114
MS.gene66440.t1 MTR_2g046740 43.827 162 74 6 188 336 562 719 2.92e-28 119
MS.gene66440.t1 MTR_4g053665 32.197 264 122 10 207 469 1 208 8.19e-23 96.7
MS.gene66440.t1 MTR_5g011300 48.454 97 49 1 248 344 1 96 1.46e-22 92.4
MS.gene66440.t1 MTR_7g081660 38.265 196 102 6 278 471 374 552 1.85e-22 100
MS.gene66440.t1 MTR_4g118440 28.623 276 130 12 206 473 1 217 3.15e-20 89.7
MS.gene66440.t1 MTR_7g097250 33.750 160 81 3 106 265 42 176 4.37e-18 82.4
MS.gene66440.t1 MTR_5g081130 30.814 172 105 5 299 469 12 170 6.88e-18 82.4
MS.gene66440.t1 MTR_8g027660 31.000 200 101 5 272 469 80 244 2.76e-17 82.0
MS.gene66440.t1 MTR_3g005755 47.887 71 36 1 238 307 236 306 2.48e-14 73.9
MS.gene66440.t1 MTR_7g079295 32.919 161 89 6 313 469 362 507 1.40e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66440.t1 AT5G67360 59.296 398 148 4 78 474 373 757 1.32e-164 483
MS.gene66440.t1 AT5G67360 60.000 80 32 0 1 80 36 115 2.98e-27 115
MS.gene66440.t1 AT2G05920 50.990 404 181 5 73 473 362 751 1.58e-126 385
MS.gene66440.t1 AT3G14067 49.618 393 178 5 90 473 388 769 9.06e-115 355
MS.gene66440.t1 AT3G14067 34.444 90 56 1 1 87 37 126 1.20e-11 67.8
MS.gene66440.t1 AT5G51750 44.472 398 208 6 78 473 390 776 2.72e-106 333
MS.gene66440.t1 AT5G51750 46.067 89 39 1 1 80 41 129 5.23e-15 78.2
MS.gene66440.t1 AT3G14240 45.013 391 195 6 90 469 386 767 1.89e-105 331
MS.gene66440.t1 AT3G14240 40.566 106 61 2 1 105 32 136 6.37e-13 71.6
MS.gene66440.t1 AT4G34980 45.547 393 198 6 83 469 374 756 3.69e-104 327
MS.gene66440.t1 AT4G34980 38.750 80 46 1 1 80 32 108 3.19e-13 72.4
MS.gene66440.t1 AT2G04160 45.288 382 190 6 90 469 404 768 3.18e-96 307
MS.gene66440.t1 AT5G59810 43.734 391 198 6 80 469 403 772 8.40e-94 301
MS.gene66440.t1 AT1G04110 43.478 391 199 8 90 472 395 771 1.59e-92 297
MS.gene66440.t1 AT1G01900 45.063 395 201 7 84 473 390 773 1.74e-88 286
MS.gene66440.t1 AT5G45650 40.769 390 201 7 91 472 422 789 7.72e-83 272
MS.gene66440.t1 AT5G45650 40.769 390 201 7 91 472 422 789 7.72e-83 272
MS.gene66440.t1 AT5G59120 39.535 387 205 8 84 469 367 725 3.91e-75 250
MS.gene66440.t1 AT5G59090 39.018 387 207 9 84 469 366 724 1.79e-74 248
MS.gene66440.t1 AT5G59090 39.018 387 207 9 84 469 368 726 1.84e-74 248
MS.gene66440.t1 AT5G59090 38.760 387 203 9 84 469 368 721 6.75e-73 244
MS.gene66440.t1 AT5G59100 37.073 410 222 12 68 469 354 735 1.12e-69 236
MS.gene66440.t1 AT5G58840 39.093 353 184 7 129 469 371 704 1.32e-69 235
MS.gene66440.t1 AT3G46850 37.789 389 207 11 84 469 376 732 9.16e-68 231
MS.gene66440.t1 AT1G20160 37.215 395 212 12 91 472 352 723 3.05e-65 224
MS.gene66440.t1 AT1G20160 37.215 395 212 12 91 472 391 762 5.46e-65 224
MS.gene66440.t1 AT5G58830 36.340 377 205 8 94 469 361 703 6.46e-65 223
MS.gene66440.t1 AT5G59130 36.842 380 206 10 91 469 377 723 4.14e-64 221
MS.gene66440.t1 AT5G59130 36.842 380 206 10 91 469 373 719 4.15e-64 221
MS.gene66440.t1 AT5G59130 36.842 380 206 10 91 469 338 684 4.41e-64 220
MS.gene66440.t1 AT3G46840 36.292 383 209 11 90 469 382 732 1.69e-63 219
MS.gene66440.t1 AT1G20150 37.371 388 220 11 91 469 395 768 1.87e-61 214
MS.gene66440.t1 AT5G59130 37.105 380 195 13 91 469 377 713 3.30e-61 213
MS.gene66440.t1 AT5G58820 35.233 386 204 10 90 469 353 698 2.36e-60 210
MS.gene66440.t1 AT4G26330 36.905 336 192 6 140 469 398 719 4.97e-60 209
MS.gene66440.t1 AT4G26330 36.905 336 192 6 140 469 412 733 7.01e-60 209
MS.gene66440.t1 AT5G45640 36.020 397 211 12 90 472 385 752 2.96e-58 205
MS.gene66440.t1 AT4G00230 33.760 391 230 10 81 469 378 741 3.59e-58 204
MS.gene66440.t1 AT5G59190 34.867 413 223 14 68 469 309 686 5.39e-56 198
MS.gene66440.t1 AT5G03620 35.606 396 211 12 91 469 388 756 2.69e-52 189
MS.gene66440.t1 AT1G32970 35.849 371 209 9 104 470 376 721 1.27e-51 186
MS.gene66440.t1 AT4G10520 32.620 374 226 8 98 470 395 743 7.75e-49 179
MS.gene66440.t1 AT4G10550 32.836 402 235 10 76 470 336 709 1.85e-48 177
MS.gene66440.t1 AT4G10550 32.836 402 235 10 76 470 336 709 1.85e-48 177
MS.gene66440.t1 AT4G10550 33.333 402 233 11 76 470 408 781 2.79e-48 177
MS.gene66440.t1 AT4G10550 33.333 402 233 11 76 470 392 765 2.96e-48 177
MS.gene66440.t1 AT1G66220 31.565 377 226 6 95 470 398 743 1.10e-47 176
MS.gene66440.t1 AT5G11940 33.498 406 230 13 74 470 377 751 1.39e-47 175
MS.gene66440.t1 AT4G10540 33.666 401 234 10 76 470 388 762 1.89e-47 175
MS.gene66440.t1 AT4G15040 34.748 377 202 12 101 469 343 683 9.16e-47 172
MS.gene66440.t1 AT4G15040 34.748 377 202 12 101 469 343 683 9.16e-47 172
MS.gene66440.t1 AT4G21640 36.875 320 172 11 160 474 436 730 1.49e-45 169
MS.gene66440.t1 AT4G21630 34.844 353 200 11 127 474 429 756 1.73e-45 169
MS.gene66440.t1 AT4G21650 34.706 340 192 11 140 474 449 763 2.97e-45 169
MS.gene66440.t1 AT1G32960 35.561 374 207 13 104 470 418 764 3.77e-45 169
MS.gene66440.t1 AT4G10510 33.416 401 235 12 76 470 334 708 7.15e-45 167
MS.gene66440.t1 AT4G10510 33.416 401 235 12 76 470 319 693 7.97e-45 167
MS.gene66440.t1 AT5G67090 32.796 372 210 12 95 460 378 715 9.41e-45 167
MS.gene66440.t1 AT5G67090 41.463 82 46 1 1 80 29 110 1.21e-12 70.9
MS.gene66440.t1 AT4G10510 33.416 401 235 12 76 470 378 752 1.06e-44 167
MS.gene66440.t1 AT1G66210 32.546 381 222 9 94 470 400 749 1.26e-44 167
MS.gene66440.t1 AT4G10510 33.416 401 235 12 76 470 390 764 1.36e-44 167
MS.gene66440.t1 AT1G32950 32.688 413 244 13 64 470 325 709 6.71e-44 164
MS.gene66440.t1 AT1G32950 32.688 413 244 13 64 470 376 760 7.36e-44 165
MS.gene66440.t1 AT1G32940 34.225 374 214 9 103 470 363 710 1.50e-43 164
MS.gene66440.t1 AT1G32940 34.225 374 214 9 103 470 363 710 1.50e-43 164
MS.gene66440.t1 AT1G32940 34.225 374 214 9 103 470 414 761 2.47e-43 163
MS.gene66440.t1 AT4G21326 30.871 379 227 8 98 470 337 686 2.63e-42 160
MS.gene66440.t1 AT2G39850 33.333 294 164 7 189 469 489 763 5.53e-39 150
MS.gene66440.t1 AT4G10530 29.759 373 223 7 99 470 400 734 6.31e-39 150
MS.gene66440.t1 AT4G21323 31.635 373 225 10 103 471 447 793 8.55e-37 144
MS.gene66440.t1 AT4G00230 39.698 199 112 4 81 279 378 568 7.02e-36 140
MS.gene66440.t1 AT2G19170 35.000 300 151 13 188 469 535 808 7.25e-36 142
MS.gene66440.t1 AT2G19170 35.000 300 151 13 188 469 535 808 7.25e-36 142
MS.gene66440.t1 AT4G30020 32.907 313 168 11 93 371 422 726 8.42e-35 138
MS.gene66440.t1 AT4G30020 32.907 313 168 11 93 371 422 726 8.42e-35 138
MS.gene66440.t1 AT4G30020 32.907 313 168 11 93 371 422 726 8.42e-35 138
MS.gene66440.t1 AT4G30020 32.907 313 168 11 93 371 422 726 8.42e-35 138
MS.gene66440.t1 AT1G30600 29.439 428 239 19 78 470 426 825 5.60e-33 133
MS.gene66440.t1 AT5G59110 39.548 177 94 4 296 471 2 166 7.55e-32 120
MS.gene66440.t1 AT5G03620 41.451 193 104 3 91 279 388 575 1.95e-31 127
MS.gene66440.t1 AT1G32980 37.879 198 107 5 244 440 3 185 6.66e-31 118
MS.gene66440.t1 AT1G62340 33.696 276 142 10 93 335 443 710 1.04e-30 126
MS.gene66440.t1 AT5G58840 41.975 162 82 2 129 279 371 531 4.94e-30 123
MS.gene66440.t1 AT4G20430 39.752 161 82 4 188 336 549 706 8.58e-27 114
MS.gene66440.t1 AT5G44530 30.791 354 196 16 84 404 434 771 1.04e-26 114
MS.gene66440.t1 AT4G20430 39.752 161 82 4 188 336 573 730 1.04e-26 114
MS.gene66440.t1 AT4G20430 39.752 161 82 4 188 336 573 730 1.04e-26 114
MS.gene66440.t1 AT5G44530 28.760 379 196 17 84 404 434 796 1.84e-22 101
MS.gene66440.t1 AT1G32940 40.506 158 85 3 122 279 436 584 3.59e-20 94.0
MS.gene66440.t1 AT1G20160 37.302 126 63 3 91 208 391 508 3.52e-12 68.9

Find 113 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCTACTCCCTTTGATTT+TGG 0.109596 1.4:-4666686 MS.gene66440:CDS
ATCTTCGGTGTTAAACTATT+TGG 0.203516 1.4:+4666983 None:intergenic
AGGTGATCAGTGAATGTTTC+TGG 0.210634 1.4:+4668336 None:intergenic
GGTTTAGCTGCTATAGTTAA+AGG 0.248373 1.4:-4666815 MS.gene66440:CDS
TTAACAAGTTCAAAAGTTAT+AGG 0.270427 1.4:-4667292 MS.gene66440:CDS
TTGAAAGTGTTTCGGCTTCT+TGG 0.279593 1.4:+4668214 None:intergenic
CTGATACGAAGTGTAGTTTA+AGG 0.283901 1.4:+4666577 None:intergenic
CATTCACTGATCACCTTAAC+TGG 0.287049 1.4:-4668329 MS.gene66440:CDS
ATTTGTGGCTCAATGCCTTC+TGG 0.287369 1.4:-4666254 MS.gene66440:CDS
TTTGAACTTGTTAAAGAATC+AGG 0.291151 1.4:+4667301 None:intergenic
TGGTGGAATTGGAATGATTT+TGG 0.301625 1.4:-4667203 MS.gene66440:CDS
CGATAATTGTTGAATACAAT+AGG 0.303113 1.4:-4666424 MS.gene66440:CDS
TTGGAAACTGCTTCGGGAAT+TGG 0.308269 1.4:-4666464 MS.gene66440:CDS
GTGAATTTCAACATTATATC+AGG 0.331745 1.4:-4666866 MS.gene66440:CDS
CCTTCTGGAACTAAGAGTTT+TGG 0.342641 1.4:-4666239 MS.gene66440:CDS
TGTTGCTTTGGAAACTGCTT+CGG 0.342679 1.4:-4666471 MS.gene66440:CDS
CTATTGTATTCAACAATTAT+CGG 0.355618 1.4:+4666425 None:intergenic
CCTGTATCTGCCCTTGATCC+TGG 0.374211 1.4:-4666647 MS.gene66440:CDS
AAAGGGAGTAGCTGGTTTCC+CGG 0.390868 1.4:+4666694 None:intergenic
CAAGTCCAACTAAATGCAAT+TGG 0.390890 1.4:+4666176 None:intergenic
AACACCGAAGATTCTTAAAC+CGG 0.403134 1.4:-4666972 MS.gene66440:CDS
GGAGTCCAATTGCATTTAGT+TGG 0.404322 1.4:-4666181 MS.gene66440:CDS
TAAGGAGGTGTATGAGAAGA+AGG 0.408200 1.4:-4666294 MS.gene66440:CDS
ATAGCAGCAGGGCTCCATTC+GGG 0.410860 1.4:+4666785 None:intergenic
GTTGCTTTGGAAACTGCTTC+GGG 0.416721 1.4:-4666470 MS.gene66440:CDS
GCGATGTGTCGAACCAGTTA+AGG 0.422439 1.4:+4668316 None:intergenic
ACTGGTGCGGTTGGTCCAAC+CGG 0.424860 1.4:-4666911 MS.gene66440:CDS
TATAGCAGCAGGGCTCCATT+CGG 0.425762 1.4:+4666784 None:intergenic
GATAATTGTTGAATACAATA+GGG 0.430834 1.4:-4666423 MS.gene66440:CDS
ACAATTGTAGATGTTGCAAC+CGG 0.431910 1.4:-4666713 MS.gene66440:CDS
ACTGAAGCATTATAAGTTCC+CGG 0.437567 1.4:+4666380 None:intergenic
AATGGAGCCCTGCTGCTATA+CGG 0.438332 1.4:-4666781 MS.gene66440:CDS
GGCTATTTGGAATGGAATGA+TGG 0.439878 1.4:-4666218 MS.gene66440:CDS
GTGATGCAAGGAAGAAATAC+AGG 0.441085 1.4:-4666523 MS.gene66440:CDS
ATCAACGTCGATGACTATCT+TGG 0.452328 1.4:-4666611 MS.gene66440:CDS
TGGAAACTCAAGAGTTGAAA+AGG 0.452364 1.4:-4667245 MS.gene66440:CDS
AAATCCGGTTTAAGAATCTT+CGG 0.457772 1.4:+4666968 None:intergenic
GGTGGATTCTTCGTCGGTGA+AGG 0.457834 1.4:-4666345 MS.gene66440:CDS
AATGTTAGTGATTCCTCAGT+TGG 0.458572 1.4:-4667337 MS.gene66440:CDS
GGTGAAGGTTGTGGTGGAAC+CGG 0.458748 1.4:-4666330 MS.gene66440:CDS
CCAAAATCAAAGGGAGTAGC+TGG 0.462630 1.4:+4666686 None:intergenic
GTGTTCTTGTTGTGTGAAGT+TGG 0.463289 1.4:+4668151 None:intergenic
ACCAACCGCACCAGTCCAAC+CGG 0.463344 1.4:+4666919 None:intergenic
CCGGCTTAGCTCTTGATAAG+AGG 0.466456 1.4:-4666892 MS.gene66440:CDS
ACAAGAACACCACAGTTCCT+TGG 0.468381 1.4:-4668138 MS.gene66440:intron
TTGGTAAACAATGAAGCATA+TGG 0.474801 1.4:-4667184 MS.gene66440:CDS
ACACCGGGAGCTATTAAATC+CGG 0.475696 1.4:+4666953 None:intergenic
TGAAGTTGGTATCTAAGTTC+AGG 0.477951 1.4:+4668165 None:intergenic
GGTATAACATCGAGAATTCC+CGG 0.483240 1.4:+4668186 None:intergenic
CATAAACAAGACCAGGATCA+AGG 0.483270 1.4:+4666636 None:intergenic
AGAAGAAGGTTTATAAAGTG+AGG 0.484295 1.4:-4666280 MS.gene66440:CDS
TCTTCTACCAGCAGCAGCAT+TGG 0.488105 1.4:-4667137 MS.gene66440:CDS
GCCGGTTGGACTGGTGCGGT+TGG 0.491642 1.4:-4666920 MS.gene66440:CDS
CGAAACACTTTCAAAACAGC+CGG 0.492606 1.4:-4668205 MS.gene66440:CDS
CCTCTTATCAAGAGCTAAGC+CGG 0.497393 1.4:+4666892 None:intergenic
TCTTACAAACGTGGGAACTC+CGG 0.499363 1.4:-4666399 MS.gene66440:CDS
CCAGGATCAAGGGCAGATAC+AGG 0.500353 1.4:+4666647 None:intergenic
GAAACTGCTTCGGGAATTGG+TGG 0.502307 1.4:-4666461 MS.gene66440:CDS
TTCTTCGTCGGTGAAGGTTG+TGG 0.515278 1.4:-4666339 MS.gene66440:CDS
CTTACAAACGTGGGAACTCC+GGG 0.518280 1.4:-4666398 MS.gene66440:CDS
AATGATGGGAAGCATAAGGT+TGG 0.520017 1.4:-4666203 MS.gene66440:CDS
ATGATGGGAAGCATAAGGTT+GGG 0.520682 1.4:-4666202 MS.gene66440:CDS
TCCAAAGCAACAGCAAAAGA+AGG 0.523715 1.4:+4666482 None:intergenic
AGTGCTGACCGTATAGCAGC+AGG 0.524204 1.4:+4666773 None:intergenic
TATAAAGTGAGGTTTATTTG+TGG 0.524824 1.4:-4666269 MS.gene66440:CDS
CTTCTACCAGCAGCAGCATT+GGG 0.527599 1.4:-4667136 MS.gene66440:CDS
GTCATCGGTGGATTCTTCGT+CGG 0.538843 1.4:-4666351 MS.gene66440:CDS
TCCTTAAAACTAATAGTCTC+CGG 0.539473 1.4:+4666311 None:intergenic
ACTGCTTCGGGAATTGGTGG+TGG 0.540817 1.4:-4666458 MS.gene66440:CDS
ATGTTAGTGATTCCTCAGTT+GGG 0.541062 1.4:-4667336 MS.gene66440:CDS
AAACCGGATTTAATAGCTCC+CGG 0.547291 1.4:-4666956 MS.gene66440:CDS
GAACTGAATGCTGCTACCAC+TGG 0.548090 1.4:+4667013 None:intergenic
TTAAAGGTGCTTACCCCGAA+TGG 0.551612 1.4:-4666799 MS.gene66440:CDS
ACATACAAACACATAGCTCA+TGG 0.551792 1.4:-4668258 MS.gene66440:CDS
ATCAGTGAATGTTTCTGGCA+TGG 0.556012 1.4:+4668341 None:intergenic
GAGAGTTTACTTGTGATGCA+AGG 0.557581 1.4:-4666535 MS.gene66440:CDS
TGACCAGATCCAAAATCAAA+GGG 0.557897 1.4:+4666677 None:intergenic
GGAAACTCAAGAGTTGAAAA+GGG 0.567502 1.4:-4667244 MS.gene66440:CDS
GTGACCAGATCCAAAATCAA+AGG 0.568440 1.4:+4666676 None:intergenic
TGCTTCAGTGGTGTTGTCAT+CGG 0.571470 1.4:-4666366 MS.gene66440:CDS
TTATCAAGAGCTAAGCCGGT+TGG 0.573292 1.4:+4666896 None:intergenic
GCTATTTGGAATGGAATGAT+GGG 0.577630 1.4:-4666217 MS.gene66440:CDS
ATGGAATGATGGGAAGCATA+AGG 0.577925 1.4:-4666207 MS.gene66440:CDS
TTCTTGGTTAGTTAGTCTTG+TGG 0.579365 1.4:+4668230 None:intergenic
CAATAGGGTTCTTACAAACG+TGG 0.583115 1.4:-4666408 MS.gene66440:CDS
TTCGTCGGTGAAGGTTGTGG+TGG 0.587445 1.4:-4666336 MS.gene66440:CDS
ATAAACAAGACCAGGATCAA+GGG 0.591716 1.4:+4666637 None:intergenic
GTAGCAGCATTCAGTTCAAG+AGG 0.593998 1.4:-4667007 MS.gene66440:CDS
TTTAGCCGGTTGGACTGGTG+CGG 0.595588 1.4:-4666924 MS.gene66440:CDS
CCAAAACTCTTAGTTCCAGA+AGG 0.602325 1.4:+4666239 None:intergenic
CCGGCTAAAATGTTTACACC+GGG 0.602678 1.4:+4666938 None:intergenic
TTCAGTGGTGTTGTCATCGG+TGG 0.603360 1.4:-4666363 MS.gene66440:CDS
ACCGGCTAAAATGTTTACAC+CGG 0.608297 1.4:+4666937 None:intergenic
TAGCAGCAGGGCTCCATTCG+GGG 0.609527 1.4:+4666786 None:intergenic
AAAATTGTGATATGTGAAAG+AGG 0.610230 1.4:-4667268 MS.gene66440:CDS
ATGTCATGTCCTCACGCGAG+TGG 0.613061 1.4:-4666836 MS.gene66440:CDS
CAATTGTAGATGTTGCAACC+GGG 0.615237 1.4:-4666712 MS.gene66440:CDS
GGGAACTTATAATGCTTCAG+TGG 0.630760 1.4:-4666378 MS.gene66440:CDS
GAAACACTTTCAAAACAGCC+GGG 0.640013 1.4:-4668204 MS.gene66440:CDS
TTGATGTCATAAACAAGACC+AGG 0.651872 1.4:+4666629 None:intergenic
GTGCTGACCGTATAGCAGCA+GGG 0.654668 1.4:+4666774 None:intergenic
ACAAGTTCAACCTTCACCAG+TGG 0.655564 1.4:-4667029 MS.gene66440:CDS
ACTCGCGTGAGGACATGACA+TGG 0.656672 1.4:+4666838 None:intergenic
AGTGAATGTTTCTGGCATGG+TGG 0.657279 1.4:+4668344 None:intergenic
AATAGGGTTCTTACAAACGT+GGG 0.661504 1.4:-4666407 MS.gene66440:CDS
TTTGTACGAGGTGTATGCTG+TGG 0.671813 1.4:+4666745 None:intergenic
TGATGCAAGGAAGAAATACA+GGG 0.674984 1.4:-4666522 MS.gene66440:CDS
AATGCTGCTACCACTGGTGA+AGG 0.679217 1.4:+4667019 None:intergenic
GCAGCTAAACCACTCGCGTG+AGG 0.682555 1.4:+4666827 None:intergenic
TTTGGCAAACCAAGGAACTG+TGG 0.689360 1.4:+4668129 None:intergenic
ATCAGATCAAACTTGCTGCG+AGG 0.707097 1.4:-4666559 MS.gene66440:CDS
ATTGTGATATGTGAAAGAGG+TGG 0.737979 1.4:-4667265 MS.gene66440:CDS
TATACAAAGATACCCAACTG+AGG 0.743432 1.4:+4667324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATTGTATTCAACAATTAT+CGG + chr1.4:4668107-4668126 None:intergenic 20.0%
!! GATAATTGTTGAATACAATA+GGG - chr1.4:4668106-4668125 MS.gene66440:intron 20.0%
!! TTAACAAGTTCAAAAGTTAT+AGG - chr1.4:4667237-4667256 MS.gene66440:CDS 20.0%
! AAAATTGTGATATGTGAAAG+AGG - chr1.4:4667261-4667280 MS.gene66440:CDS 25.0%
! AGTTATATAACACTTGGAAA+TGG - chr1.4:4667093-4667112 MS.gene66440:CDS 25.0%
! CAACAAAGTCAAGTAATTAT+TGG - chr1.4:4666451-4666470 MS.gene66440:CDS 25.0%
! CGATAATTGTTGAATACAAT+AGG - chr1.4:4668105-4668124 MS.gene66440:intron 25.0%
! GTGAATTTCAACATTATATC+AGG - chr1.4:4667663-4667682 MS.gene66440:intron 25.0%
! TATAAAGTGAGGTTTATTTG+TGG - chr1.4:4668260-4668279 MS.gene66440:CDS 25.0%
! TTATATAACTAGGAAAATCG+CGG + chr1.4:4667083-4667102 None:intergenic 25.0%
! TTTCCAAGTGTTATATAACT+AGG + chr1.4:4667093-4667112 None:intergenic 25.0%
! TTTCCTAGTTATATAACACT+TGG - chr1.4:4667087-4667106 MS.gene66440:CDS 25.0%
!!! TTTGAACTTGTTAAAGAATC+AGG + chr1.4:4667231-4667250 None:intergenic 25.0%
AAATCCGGTTTAAGAATCTT+CGG + chr1.4:4667564-4667583 None:intergenic 30.0%
AGAAGAAGGTTTATAAAGTG+AGG - chr1.4:4668249-4668268 MS.gene66440:CDS 30.0%
ATGGATAAAGCTATAGAAGA+CGG - chr1.4:4666865-4666884 MS.gene66440:CDS 30.0%
ATTATTGGTATTCTTGACAC+TGG - chr1.4:4666466-4666485 MS.gene66440:CDS 30.0%
TCCTTAAAACTAATAGTCTC+CGG + chr1.4:4668221-4668240 None:intergenic 30.0%
TGATGAATTCATGTTGTTAC+CGG + chr1.4:4666569-4666588 None:intergenic 30.0%
TTGGTAAACAATGAAGCATA+TGG - chr1.4:4667345-4667364 MS.gene66440:intron 30.0%
! GTGCAAGGTTTTTCTTAAAA+GGG - chr1.4:4666611-4666630 MS.gene66440:CDS 30.0%
!! ATCTTCGGTGTTAAACTATT+TGG + chr1.4:4667549-4667568 None:intergenic 30.0%
!! CAAGAGCTAAACTTGTTTTT+GGG - chr1.4:4667466-4667485 MS.gene66440:intron 30.0%
!! GATTCTGTTGTTTCATCTAT+TGG + chr1.4:4666655-4666674 None:intergenic 30.0%
!!! AACTAAGAGTTTTGGCTATT+TGG - chr1.4:4668298-4668317 MS.gene66440:CDS 30.0%
!!! AAGAGCTAAACTTGTTTTTG+GGG - chr1.4:4667467-4667486 MS.gene66440:intron 30.0%
!!! GGTAAAAGAGTGTTTGTTTT+TGG + chr1.4:4666421-4666440 None:intergenic 30.0%
AACACCGAAGATTCTTAAAC+CGG - chr1.4:4667557-4667576 MS.gene66440:intron 35.0%
AACATCTTATCGATGTCCAT+CGG - chr1.4:4666892-4666911 MS.gene66440:CDS 35.0%
AATAGGGTTCTTACAAACGT+GGG - chr1.4:4668122-4668141 MS.gene66440:intron 35.0%
AATGTTAGTGATTCCTCAGT+TGG - chr1.4:4667192-4667211 MS.gene66440:CDS 35.0%
ACAATTGTAGATGTTGCAAC+CGG - chr1.4:4667816-4667835 MS.gene66440:intron 35.0%
ACATACAAACACATAGCTCA+TGG - chr1.4:4666271-4666290 MS.gene66440:CDS 35.0%
ACATTACCTGCATAAACAAG+TGG + chr1.4:4667177-4667196 None:intergenic 35.0%
ATAAACAAGACCAGGATCAA+GGG + chr1.4:4667895-4667914 None:intergenic 35.0%
ATGTTAGTGATTCCTCAGTT+GGG - chr1.4:4667193-4667212 MS.gene66440:CDS 35.0%
ATTGTGATATGTGAAAGAGG+TGG - chr1.4:4667264-4667283 MS.gene66440:CDS 35.0%
CAAGTCCAACTAAATGCAAT+TGG + chr1.4:4668356-4668375 None:intergenic 35.0%
CATACACCTTTCCAATTACT+TGG + chr1.4:4666541-4666560 None:intergenic 35.0%
CCAATACCAAGTAATTGGAA+AGG - chr1.4:4666532-4666551 MS.gene66440:CDS 35.0%
CCTTTCCAATTACTTGGTAT+TGG + chr1.4:4666535-4666554 None:intergenic 35.0%
CTAAAAAGCTTAGATGACAC+AGG - chr1.4:4666502-4666521 MS.gene66440:CDS 35.0%
CTGATACGAAGTGTAGTTTA+AGG + chr1.4:4667955-4667974 None:intergenic 35.0%
GGAAACTCAAGAGTTGAAAA+GGG - chr1.4:4667285-4667304 MS.gene66440:CDS 35.0%
GGAAATGGAAAAACTTACAC+TGG - chr1.4:4667108-4667127 MS.gene66440:CDS 35.0%
GGTAGCAATGAATCAGTTAA+AGG + chr1.4:4667156-4667175 None:intergenic 35.0%
GGTTTAGCTGCTATAGTTAA+AGG - chr1.4:4667714-4667733 MS.gene66440:intron 35.0%
GTAAAAAAAGCTGGTGGAAT+TGG - chr1.4:4667315-4667334 MS.gene66440:CDS 35.0%
GTATTCTTGACACTGGTATA+TGG - chr1.4:4666473-4666492 MS.gene66440:CDS 35.0%
TACAGAGACATCATTGCAAT+TGG - chr1.4:4666934-4666953 MS.gene66440:CDS 35.0%
TATACAAAGATACCCAACTG+AGG + chr1.4:4667208-4667227 None:intergenic 35.0%
TGACCAGATCCAAAATCAAA+GGG + chr1.4:4667855-4667874 None:intergenic 35.0%
TGATGCAAGGAAGAAATACA+GGG - chr1.4:4668007-4668026 MS.gene66440:intron 35.0%
TGGAAACTCAAGAGTTGAAA+AGG - chr1.4:4667284-4667303 MS.gene66440:CDS 35.0%
TTGATGTCATAAACAAGACC+AGG + chr1.4:4667903-4667922 None:intergenic 35.0%
TTGGTCCAATACCAAGTAAT+TGG - chr1.4:4666527-4666546 MS.gene66440:CDS 35.0%
! ACTGAAGCATTATAAGTTCC+CGG + chr1.4:4668152-4668171 None:intergenic 35.0%
! CTTGTTGTAAAAAAAGCTGG+TGG - chr1.4:4667309-4667328 MS.gene66440:CDS 35.0%
! GCTATTTGGAATGGAATGAT+GGG - chr1.4:4668312-4668331 MS.gene66440:CDS 35.0%
! GGTGCAAGGTTTTTCTTAAA+AGG - chr1.4:4666610-4666629 MS.gene66440:CDS 35.0%
! TGGTGGAATTGGAATGATTT+TGG - chr1.4:4667326-4667345 MS.gene66440:CDS 35.0%
!! ATTCTAGTTTCATCTTCAGC+AGG - chr1.4:4666982-4667001 MS.gene66440:CDS 35.0%
!! CCAAAAACAAGTTTAGCTCT+TGG + chr1.4:4667468-4667487 None:intergenic 35.0%
!! CCAAGAGCTAAACTTGTTTT+TGG - chr1.4:4667465-4667484 MS.gene66440:intron 35.0%
!! GGTCTTGTTGTAAAAAAAGC+TGG - chr1.4:4667306-4667325 MS.gene66440:CDS 35.0%
!! TGAAGTTGGTATCTAAGTTC+AGG + chr1.4:4666367-4666386 None:intergenic 35.0%
!! TTCTTGGTTAGTTAGTCTTG+TGG + chr1.4:4666302-4666321 None:intergenic 35.0%
!!! ACCGGAGACTATTAGTTTTA+AGG - chr1.4:4668217-4668236 MS.gene66440:CDS 35.0%
!!! AGAGCTAAACTTGTTTTTGG+GGG - chr1.4:4667468-4667487 MS.gene66440:intron 35.0%
!!! AGAGTTTTGGCTATTTGGAA+TGG - chr1.4:4668303-4668322 MS.gene66440:CDS 35.0%
!!! GGAGACTATTAGTTTTAAGG+AGG - chr1.4:4668220-4668239 MS.gene66440:CDS 35.0%
!!! TCATCTAAGCTTTTTAGCTC+TGG + chr1.4:4666499-4666518 None:intergenic 35.0%
!!! TGTTTGTTTTTGGCAAACCA+AGG + chr1.4:4666411-4666430 None:intergenic 35.0%
AAAATCGCGGTCAATTGTTC+CGG + chr1.4:4667070-4667089 None:intergenic 40.0%
AAACCGGATTTAATAGCTCC+CGG - chr1.4:4667573-4667592 MS.gene66440:intron 40.0%
ACAGAAAACTCATAGGTGCA+AGG - chr1.4:4666596-4666615 MS.gene66440:CDS 40.0%
ACCGGCTAAAATGTTTACAC+CGG + chr1.4:4667595-4667614 None:intergenic 40.0%
AGATCAGCTAGAGATGATGA+TGG - chr1.4:4666676-4666695 MS.gene66440:CDS 40.0%
AGGTGATCAGTGAATGTTTC+TGG + chr1.4:4666196-4666215 None:intergenic 40.0%
ATCAACGTCGATGACTATCT+TGG - chr1.4:4667918-4667937 MS.gene66440:intron 40.0%
CAATAGGGTTCTTACAAACG+TGG - chr1.4:4668121-4668140 MS.gene66440:intron 40.0%
CAATTGTAGATGTTGCAACC+GGG - chr1.4:4667817-4667836 MS.gene66440:intron 40.0%
CACTGCAACAGAAAACTCAT+AGG - chr1.4:4666589-4666608 MS.gene66440:CDS 40.0%
CATAAACAAGACCAGGATCA+AGG + chr1.4:4667896-4667915 None:intergenic 40.0%
CATTCACTGATCACCTTAAC+TGG - chr1.4:4666200-4666219 MS.gene66440:CDS 40.0%
CCAAAACTCTTAGTTCCAGA+AGG + chr1.4:4668293-4668312 None:intergenic 40.0%
CGAAACACTTTCAAAACAGC+CGG - chr1.4:4666324-4666343 MS.gene66440:CDS 40.0%
GAAACACTTTCAAAACAGCC+GGG - chr1.4:4666325-4666344 MS.gene66440:CDS 40.0%
GAGAGTTTACTTGTGATGCA+AGG - chr1.4:4667994-4668013 MS.gene66440:intron 40.0%
GCATACACCTCGTACAAAAA+CGG - chr1.4:4667789-4667808 MS.gene66440:intron 40.0%
GGAGTCCAATTGCATTTAGT+TGG - chr1.4:4668348-4668367 MS.gene66440:CDS 40.0%
GGGAACTTATAATGCTTCAG+TGG - chr1.4:4668151-4668170 MS.gene66440:CDS 40.0%
GGTATAACATCGAGAATTCC+CGG + chr1.4:4666346-4666365 None:intergenic 40.0%
GTGACCAGATCCAAAATCAA+AGG + chr1.4:4667856-4667875 None:intergenic 40.0%
GTGATGCAAGGAAGAAATAC+AGG - chr1.4:4668006-4668025 MS.gene66440:intron 40.0%
GTTTCATCTTCAGCAGGAAA+TGG - chr1.4:4666988-4667007 MS.gene66440:CDS 40.0%
TCCAAAGCAACAGCAAAAGA+AGG + chr1.4:4668050-4668069 None:intergenic 40.0%
TGCTGAAAGCTTGTCAAATG+TGG - chr1.4:4667020-4667039 MS.gene66440:CDS 40.0%
TTGCTACCACTTGTTTATGC+AGG - chr1.4:4667168-4667187 MS.gene66440:CDS 40.0%
TTTGACAAGCTTTCAGCACT+TGG + chr1.4:4667018-4667037 None:intergenic 40.0%
! AATGATGGGAAGCATAAGGT+TGG - chr1.4:4668326-4668345 MS.gene66440:CDS 40.0%
! AGCTTATTCGGTTTAGCTTC+TGG - chr1.4:4666751-4666770 MS.gene66440:CDS 40.0%
! ATGATGGGAAGCATAAGGTT+GGG - chr1.4:4668327-4668346 MS.gene66440:CDS 40.0%
! ATGGAATGATGGGAAGCATA+AGG - chr1.4:4668322-4668341 MS.gene66440:CDS 40.0%
! GGCTATTTGGAATGGAATGA+TGG - chr1.4:4668311-4668330 MS.gene66440:CDS 40.0%
! GTAGCAGAAGCTAGCTTATT+CGG - chr1.4:4666739-4666758 MS.gene66440:CDS 40.0%
! GTGTTCTTGTTGTGTGAAGT+TGG + chr1.4:4666381-4666400 None:intergenic 40.0%
! TAAGGAGGTGTATGAGAAGA+AGG - chr1.4:4668235-4668254 MS.gene66440:CDS 40.0%
! TGACTTTGTTGTCTAGAGTG+AGG + chr1.4:4666442-4666461 None:intergenic 40.0%
! TGGAAAGGTGTATGTGAAAC+CGG - chr1.4:4666547-4666566 MS.gene66440:CDS 40.0%
!! ACTCCCTTTGATTTTGGATC+TGG - chr1.4:4667849-4667868 MS.gene66440:intron 40.0%
!! ATCAGTGAATGTTTCTGGCA+TGG + chr1.4:4666191-4666210 None:intergenic 40.0%
!! GTGTAAACATTTTAGCCGGT+TGG - chr1.4:4667595-4667614 MS.gene66440:intron 40.0%
!! TGTTGCTTTGGAAACTGCTT+CGG - chr1.4:4668058-4668077 MS.gene66440:intron 40.0%
!! TGTTTGTCCGTTTTTGTACG+AGG + chr1.4:4667799-4667818 None:intergenic 40.0%
!! TTGAAAGTGTTTCGGCTTCT+TGG + chr1.4:4666318-4666337 None:intergenic 40.0%
!!! CCTTCTGGAACTAAGAGTTT+TGG - chr1.4:4668290-4668309 MS.gene66440:CDS 40.0%
!!! CGGCTGTTTTGAAAGTGTTT+CGG + chr1.4:4666326-4666345 None:intergenic 40.0%
!!! TCCTTCTTTTGCTGTTGCTT+TGG - chr1.4:4668046-4668065 MS.gene66440:intron 40.0%
ACAAGAACACCACAGTTCCT+TGG - chr1.4:4666391-4666410 MS.gene66440:CDS 45.0%
ACAAGTTCAACCTTCACCAG+TGG - chr1.4:4667500-4667519 MS.gene66440:intron 45.0%
ACACCGGGAGCTATTAAATC+CGG + chr1.4:4667579-4667598 None:intergenic 45.0%
ACTGGTGCATCACTTTACAG+TGG - chr1.4:4667126-4667145 MS.gene66440:CDS 45.0%
AGCTTAGATGACACAGGACT+TGG - chr1.4:4666508-4666527 MS.gene66440:CDS 45.0%
ATCTTATCGATGTCCATCGG+TGG - chr1.4:4666895-4666914 MS.gene66440:CDS 45.0%
ATTTGTGGCTCAATGCCTTC+TGG - chr1.4:4668275-4668294 MS.gene66440:CDS 45.0%
CACACATTAACAACAGCAGC+AGG - chr1.4:4666709-4666728 MS.gene66440:CDS 45.0%
CCAAAATCAAAGGGAGTAGC+TGG + chr1.4:4667846-4667865 None:intergenic 45.0%
CCGGCTAAAATGTTTACACC+GGG + chr1.4:4667594-4667613 None:intergenic 45.0%
CCTCTTATCAAGAGCTAAGC+CGG + chr1.4:4667640-4667659 None:intergenic 45.0%
GCTTTCACAGCAATGTCTCA+TGG - chr1.4:4666958-4666977 MS.gene66440:CDS 45.0%
GTAGCAGCATTCAGTTCAAG+AGG - chr1.4:4667522-4667541 MS.gene66440:intron 45.0%
TCATCTTCAGCAGGAAATGG+TGG - chr1.4:4666991-4667010 MS.gene66440:CDS 45.0%
TCTTACAAACGTGGGAACTC+CGG - chr1.4:4668130-4668149 MS.gene66440:intron 45.0%
TCTTATCGATGTCCATCGGT+GGG - chr1.4:4666896-4666915 MS.gene66440:CDS 45.0%
TTAGCTTCTGGTACAGCAAG+AGG - chr1.4:4666763-4666782 MS.gene66440:CDS 45.0%
TTATCAAGAGCTAAGCCGGT+TGG + chr1.4:4667636-4667655 None:intergenic 45.0%
TTCACTTCAGACATAGCTGC+TGG - chr1.4:4666841-4666860 MS.gene66440:CDS 45.0%
TTCAGACATAGCTGCTGGAA+TGG - chr1.4:4666846-4666865 MS.gene66440:CDS 45.0%
TTGGAAACTGCTTCGGGAAT+TGG - chr1.4:4668065-4668084 MS.gene66440:intron 45.0%
TTTGGCAAACCAAGGAACTG+TGG + chr1.4:4666403-4666422 None:intergenic 45.0%
TTTGTACGAGGTGTATGCTG+TGG + chr1.4:4667787-4667806 None:intergenic 45.0%
! AAAGGGTATGAAGCAGCACT+TGG - chr1.4:4666628-4666647 MS.gene66440:CDS 45.0%
! TGATTTTGGATCTGGTCACG+TGG - chr1.4:4667857-4667876 MS.gene66440:intron 45.0%
!! AACATTTTAGCCGGTTGGAC+TGG - chr1.4:4667600-4667619 MS.gene66440:intron 45.0%
!! AGTGAATGTTTCTGGCATGG+TGG + chr1.4:4666188-4666207 None:intergenic 45.0%
!! ATCAGATCAAACTTGCTGCG+AGG - chr1.4:4667970-4667989 MS.gene66440:intron 45.0%
!! CCAGCTACTCCCTTTGATTT+TGG - chr1.4:4667843-4667862 MS.gene66440:intron 45.0%
!! CCCGGTGTAAACATTTTAGC+CGG - chr1.4:4667591-4667610 MS.gene66440:intron 45.0%
!! GCTAGAGATGATGATGGACA+TGG - chr1.4:4666682-4666701 MS.gene66440:CDS 45.0%
!! GTTGCTTTGGAAACTGCTTC+GGG - chr1.4:4668059-4668078 MS.gene66440:intron 45.0%
!! TACAAAGTGTGCTGGCTTAG+TGG - chr1.4:4666814-4666833 MS.gene66440:CDS 45.0%
!! TGCTTCAGTGGTGTTGTCAT+CGG - chr1.4:4668163-4668182 MS.gene66440:CDS 45.0%
!! TTAAAGGTGCTTACCCCGAA+TGG - chr1.4:4667730-4667749 MS.gene66440:intron 45.0%
AATGCTGCTACCACTGGTGA+AGG + chr1.4:4667513-4667532 None:intergenic 50.0%
AATGGAGCCCTGCTGCTATA+CGG - chr1.4:4667748-4667767 MS.gene66440:intron 50.0%
CTTACAAACGTGGGAACTCC+GGG - chr1.4:4668131-4668150 MS.gene66440:intron 50.0%
CTTCTACCAGCAGCAGCATT+GGG - chr1.4:4667393-4667412 MS.gene66440:intron 50.0%
GAAACTGCTTCGGGAATTGG+TGG - chr1.4:4668068-4668087 MS.gene66440:intron 50.0%
GAACTGAATGCTGCTACCAC+TGG + chr1.4:4667519-4667538 None:intergenic 50.0%
GCACCAACGGTTGTTATCCA+TGG + chr1.4:4667048-4667067 None:intergenic 50.0%
GCACCATGGATAACAACCGT+TGG - chr1.4:4667042-4667061 MS.gene66440:CDS 50.0%
GCGATGTGTCGAACCAGTTA+AGG + chr1.4:4666216-4666235 None:intergenic 50.0%
GCTTGTCAAATGTGGCACCA+TGG - chr1.4:4667028-4667047 MS.gene66440:CDS 50.0%
GTCAATTGTTCCGGCACCAA+CGG + chr1.4:4667061-4667080 None:intergenic 50.0%
TATAGCAGCAGGGCTCCATT+CGG + chr1.4:4667748-4667767 None:intergenic 50.0%
TCTTCTACCAGCAGCAGCAT+TGG - chr1.4:4667392-4667411 MS.gene66440:intron 50.0%
TGGATAACAACCGTTGGTGC+CGG - chr1.4:4667048-4667067 MS.gene66440:CDS 50.0%
TTCTGGTACAGCAAGAGGCA+TGG - chr1.4:4666768-4666787 MS.gene66440:CDS 50.0%
TTCTTCGTCGGTGAAGGTTG+TGG - chr1.4:4668190-4668209 MS.gene66440:CDS 50.0%
! AAAGGGAGTAGCTGGTTTCC+CGG + chr1.4:4667838-4667857 None:intergenic 50.0%
! CCGGCTTAGCTCTTGATAAG+AGG - chr1.4:4667637-4667656 MS.gene66440:intron 50.0%
! GTCATCGGTGGATTCTTCGT+CGG - chr1.4:4668178-4668197 MS.gene66440:CDS 50.0%
! TTTTGACCCAATGCTGCTGC+TGG + chr1.4:4667402-4667421 None:intergenic 50.0%
!! TTCAGTGGTGTTGTCATCGG+TGG - chr1.4:4668166-4668185 MS.gene66440:CDS 50.0%
ACTCGCGTGAGGACATGACA+TGG + chr1.4:4667694-4667713 None:intergenic 55.0%
ACTGCTTCGGGAATTGGTGG+TGG - chr1.4:4668071-4668090 MS.gene66440:intron 55.0%
ATAGCAGCAGGGCTCCATTC+GGG + chr1.4:4667747-4667766 None:intergenic 55.0%
ATCCATCATGCTCCCACCGA+TGG + chr1.4:4666911-4666930 None:intergenic 55.0%
ATGTCATGTCCTCACGCGAG+TGG - chr1.4:4667693-4667712 MS.gene66440:intron 55.0%
CCAGGATCAAGGGCAGATAC+AGG + chr1.4:4667885-4667904 None:intergenic 55.0%
CCTGTATCTGCCCTTGATCC+TGG - chr1.4:4667882-4667901 MS.gene66440:intron 55.0%
TCGCGGCTTACAAAGTGTGC+TGG - chr1.4:4666806-4666825 MS.gene66440:CDS 55.0%
TTCGTCGGTGAAGGTTGTGG+TGG - chr1.4:4668193-4668212 MS.gene66440:CDS 55.0%
! GGTGAAGGTTGTGGTGGAAC+CGG - chr1.4:4668199-4668218 MS.gene66440:CDS 55.0%
! GGTGGATTCTTCGTCGGTGA+AGG - chr1.4:4668184-4668203 MS.gene66440:CDS 55.0%
! GTGCTGACCGTATAGCAGCA+GGG + chr1.4:4667758-4667777 None:intergenic 55.0%
!! AGTGCTGACCGTATAGCAGC+AGG + chr1.4:4667759-4667778 None:intergenic 55.0%
!! TTTAGCCGGTTGGACTGGTG+CGG - chr1.4:4667605-4667624 MS.gene66440:intron 55.0%
ACCAACCGCACCAGTCCAAC+CGG + chr1.4:4667613-4667632 None:intergenic 60.0%
GCAGCTAAACCACTCGCGTG+AGG + chr1.4:4667705-4667724 None:intergenic 60.0%
TAGCAGCAGGGCTCCATTCG+GGG + chr1.4:4667746-4667765 None:intergenic 60.0%
! ACTGGTGCGGTTGGTCCAAC+CGG - chr1.4:4667618-4667637 MS.gene66440:intron 60.0%
! GTCCATCGGTGGGAGCATGA+TGG - chr1.4:4666906-4666925 MS.gene66440:CDS 60.0%
! GGCTACAGAAGCGCGTGTCG+CGG - chr1.4:4666789-4666808 MS.gene66440:CDS 65.0%
!! GCCGGTTGGACTGGTGCGGT+TGG - chr1.4:4667609-4667628 MS.gene66440:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 4666175 4668376 4666175 ID=MS.gene66440
chr1.4 mRNA 4666175 4668376 4666175 ID=MS.gene66440.t1;Parent=MS.gene66440
chr1.4 exon 4668139 4668376 4668139 ID=MS.gene66440.t1.exon1;Parent=MS.gene66440.t1
chr1.4 CDS 4668139 4668376 4668139 ID=cds.MS.gene66440.t1;Parent=MS.gene66440.t1
chr1.4 exon 4666175 4667361 4666175 ID=MS.gene66440.t1.exon2;Parent=MS.gene66440.t1
chr1.4 CDS 4666175 4667361 4666175 ID=cds.MS.gene66440.t1;Parent=MS.gene66440.t1
Gene Sequence

>MS.gene66440

ATGGACAAATCCACCATGCCAGAAACATTCACTGATCACCTTAACTGGTTCGACACATCGCTAAAATCAGTATCAGAAACAGCAGAGATTCTATACACATACAAACACATAGCTCATGGATACTCCACAAGACTAACTAACCAAGAAGCCGAAACACTTTCAAAACAGCCGGGAATTCTCGATGTTATACCTGAACTTAGATACCAACTTCACACAACAAGAACACCACAGTTCCTTGGTTTGCCAAAAACAAACACTCTTTTACCTCACTCTAGACAACAAAGTCAAGTAATTATTGGTATTCTTGACACTGGTATATGGCCAGAGCTAAAAAGCTTAGATGACACAGGACTTGGTCCAATACCAAGTAATTGGAAAGGTGTATGTGAAACCGGTAACAACATGAATTCATCACACTGCAACAGAAAACTCATAGGTGCAAGGTTTTTCTTAAAAGGGTATGAAGCAGCACTTGGTCCAATAGATGAAACAACAGAATCAAGATCAGCTAGAGATGATGATGGACATGGAAGTCACACATTAACAACAGCAGCAGGTTCTGTTGTAGCAGAAGCTAGCTTATTCGGTTTAGCTTCTGGTACAGCAAGAGGCATGGCTACAGAAGCGCGTGTCGCGGCTTACAAAGTGTGCTGGCTTAGTGGTTGTTTCACTTCAGACATAGCTGCTGGAATGGATAAAGCTATAGAAGACGGTGTTAACATCTTATCGATGTCCATCGGTGGGAGCATGATGGATTACTACAGAGACATCATTGCAATTGGTGCTTTCACAGCAATGTCTCATGGAATTCTAGTTTCATCTTCAGCAGGAAATGGTGGACCAAGTGCTGAAAGCTTGTCAAATGTGGCACCATGGATAACAACCGTTGGTGCCGGAACAATTGACCGCGATTTTCCTAGTTATATAACACTTGGAAATGGAAAAACTTACACTGGTGCATCACTTTACAGTGGAAAGCCTTTAACTGATTCATTGCTACCACTTGTTTATGCAGGTAATGTTAGTGATTCCTCAGTTGGGTATCTTTGTATACCTGATTCTTTAACAAGTTCAAAAGTTATAGGTAAAATTGTGATATGTGAAAGAGGTGGAAACTCAAGAGTTGAAAAGGGTCTTGTTGTAAAAAAAGCTGGTGGAATTGGAATGATTTTGGTAAACAATGAAGCATATGGTGAAGAGTTAATTGCTGATTCTCATCTTCTACCAGCAGCAGCATTGGGTCAAAAATCAAGCACTGTTTTAAAAGACTACGTTTTTACTACGAAAAATCCAAGAGCTAAACTTGTTTTTGGGGGCACACACTTACAAGTTCAACCTTCACCAGTGGTAGCAGCATTCAGTTCAAGAGGACCAAATAGTTTAACACCGAAGATTCTTAAACCGGATTTAATAGCTCCCGGTGTAAACATTTTAGCCGGTTGGACTGGTGCGGTTGGTCCAACCGGCTTAGCTCTTGATAAGAGGCACGTGAATTTCAACATTATATCAGGAACATCCATGTCATGTCCTCACGCGAGTGGTTTAGCTGCTATAGTTAAAGGTGCTTACCCCGAATGGAGCCCTGCTGCTATACGGTCAGCACTAATGACCACAGCATACACCTCGTACAAAAACGGACAAACAATTGTAGATGTTGCAACCGGGAAACCAGCTACTCCCTTTGATTTTGGATCTGGTCACGTGGATCCTGTATCTGCCCTTGATCCTGGTCTTGTTTATGACATCAACGTCGATGACTATCTTGGATTTTTCTGTGCCTTAAACTACACTTCGTATCAGATCAAACTTGCTGCGAGGAGAGAGTTTACTTGTGATGCAAGGAAGAAATACAGGGTTGAAGATTTTAACTATCCTTCTTTTGCTGTTGCTTTGGAAACTGCTTCGGGAATTGGTGGTGGTTCTGATAAACCGATAATTGTTGAATACAATAGGGTTCTTACAAACGTGGGAACTCCGGGAACTTATAATGCTTCAGTGGTGTTGTCATCGGTGGATTCTTCGTCGGTGAAGGTTGTGGTGGAACCGGAGACTATTAGTTTTAAGGAGGTGTATGAGAAGAAGGTTTATAAAGTGAGGTTTATTTGTGGCTCAATGCCTTCTGGAACTAAGAGTTTTGGCTATTTGGAATGGAATGATGGGAAGCATAAGGTTGGGAGTCCAATTGCATTTAGTTGGACTTGA
Protein sequence

>MS.gene66440.t1

MDKSTMPETFTDHLNWFDTSLKSVSETAEILYTYKHIAHGYSTRLTNQEAETLSKQPGILDVIPELRYQLHTTRTPQFLGNVSDSSVGYLCIPDSLTSSKVIGKIVICERGGNSRVEKGLVVKKAGGIGMILVNNEAYGEELIADSHLLPAAALGQKSSTVLKDYVFTTKNPRAKLVFGGTHLQVQPSPVVAAFSSRGPNSLTPKILKPDLIAPGVNILAGWTGAVGPTGLALDKRHVNFNIISGTSMSCPHASGLAAIVKGAYPEWSPAAIRSALMTTAYTSYKNGQTIVDVATGKPATPFDFGSGHVDPVSALDPGLVYDINVDDYLGFFCALNYTSYQIKLAARREFTCDARKKYRVEDFNYPSFAVALETASGIGGGSDKPIIVEYNRVLTNVGTPGTYNASVVLSSVDSSSVKVVVEPETISFKEVYEKKVYKVRFICGSMPSGTKSFGYLEWNDGKHKVGSPIAFSWT