Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055892.t1 | XP_013452470.1 | 98.9 | 378 | 4 | 0 | 1 | 378 | 150 | 527 | 3.10E-216 | 760.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055892.t1 | Q8GYY0 | 61.4 | 378 | 146 | 0 | 1 | 378 | 115 | 492 | 7.4e-142 | 505.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055892.t1 | A0A072UBT9 | 98.9 | 378 | 4 | 0 | 1 | 378 | 150 | 527 | 2.2e-216 | 760.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050625 | MS.gene055892 | 0.803267 | 3.78E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene055892 | 0.818966 | 1.49E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene055892 | 0.821765 | 3.39E-53 | -1.69E-46 |
| MS.gene053318 | MS.gene055892 | 0.803595 | 3.23E-49 | -1.69E-46 |
| MS.gene055892 | MS.gene055893 | 0.971117 | 1.16E-132 | -1.69E-46 |
| MS.gene055892 | MS.gene055894 | 0.927663 | 8.58E-92 | -1.69E-46 |
| MS.gene055892 | MS.gene055895 | 0.855772 | 5.04E-62 | -1.69E-46 |
| MS.gene055892 | MS.gene057124 | 0.816478 | 5.42E-52 | -1.69E-46 |
| MS.gene055892 | MS.gene059420 | 0.810667 | 1.03E-50 | -1.69E-46 |
| MS.gene055892 | MS.gene059946 | 0.830815 | 2.37E-55 | -1.69E-46 |
| MS.gene055892 | MS.gene060837 | 0.808573 | 2.90E-50 | -1.69E-46 |
| MS.gene055892 | MS.gene06897 | 0.800078 | 1.71E-48 | -1.69E-46 |
| MS.gene055892 | MS.gene07137 | 0.807074 | 6.04E-50 | -1.69E-46 |
| MS.gene055892 | MS.gene07139 | 0.805833 | 1.10E-49 | -1.69E-46 |
| MS.gene055892 | MS.gene07621 | 0.802809 | 4.70E-49 | -1.69E-46 |
| MS.gene055892 | MS.gene07871 | 0.806813 | 6.85E-50 | -1.69E-46 |
| MS.gene055892 | MS.gene09570 | 0.817738 | 2.82E-52 | -1.69E-46 |
| MS.gene055892 | MS.gene30427 | 0.80571 | 1.17E-49 | -1.69E-46 |
| MS.gene055892 | MS.gene33017 | 0.802506 | 5.43E-49 | -1.69E-46 |
| MS.gene055892 | MS.gene33072 | 0.813268 | 2.79E-51 | -1.69E-46 |
| MS.gene055892 | MS.gene33218 | 0.882333 | 1.14E-70 | -1.69E-46 |
| MS.gene055892 | MS.gene37408 | 0.850239 | 1.93E-60 | -1.69E-46 |
| MS.gene055892 | MS.gene38232 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene055892 | MS.gene39277 | 0.811907 | 5.53E-51 | -1.69E-46 |
| MS.gene055892 | MS.gene42899 | 0.967925 | 5.92E-128 | -1.69E-46 |
| MS.gene055892 | MS.gene42900 | 0.968317 | 1.66E-128 | -1.69E-46 |
| MS.gene055892 | MS.gene43482 | 0.802806 | 4.71E-49 | -1.69E-46 |
| MS.gene055892 | MS.gene48312 | 0.813578 | 2.38E-51 | -1.69E-46 |
| MS.gene055892 | MS.gene49436 | 0.817971 | 2.50E-52 | -1.69E-46 |
| MS.gene055892 | MS.gene50985 | 0.816157 | 6.39E-52 | -1.69E-46 |
| MS.gene055892 | MS.gene53419 | 0.814701 | 1.35E-51 | -1.69E-46 |
| MS.gene055892 | MS.gene54795 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene055892 | MS.gene55868 | 0.833725 | 4.52E-56 | -1.69E-46 |
| MS.gene055892 | MS.gene61160 | 0.806445 | 8.20E-50 | -1.69E-46 |
| MS.gene055892 | MS.gene66440 | 0.836737 | 7.85E-57 | -1.69E-46 |
| MS.gene055892 | MS.gene67279 | 0.801119 | 1.05E-48 | -1.69E-46 |
| MS.gene055892 | MS.gene73228 | 0.805677 | 1.19E-49 | -1.69E-46 |
| MS.gene055892 | MS.gene81254 | 0.818641 | 1.76E-52 | -1.69E-46 |
| MS.gene055892 | MS.gene90462 | 0.823558 | 1.30E-53 | -1.69E-46 |
| MS.gene055892 | MS.gene90772 | 0.810714 | 1.00E-50 | -1.69E-46 |
| MS.gene055892 | MS.gene92549 | 0.800016 | 1.76E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048867 | MS.gene055892 | PPI |
| MS.gene89714 | MS.gene055892 | PPI |
| MS.gene06009 | MS.gene055892 | PPI |
| MS.gene55742 | MS.gene055892 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055892.t1 | MTR_6g463260 | 98.942 | 378 | 4 | 0 | 1 | 378 | 150 | 527 | 0.0 | 783 |
| MS.gene055892.t1 | MTR_5g011400 | 56.614 | 378 | 163 | 1 | 1 | 378 | 118 | 494 | 2.07e-165 | 472 |
| MS.gene055892.t1 | MTR_4g097540 | 46.015 | 389 | 198 | 5 | 1 | 378 | 50 | 437 | 1.93e-133 | 390 |
| MS.gene055892.t1 | MTR_6g091760 | 46.791 | 374 | 196 | 2 | 1 | 373 | 60 | 431 | 3.53e-133 | 388 |
| MS.gene055892.t1 | MTR_8g101750 | 46.524 | 374 | 191 | 3 | 1 | 373 | 58 | 423 | 9.55e-132 | 384 |
| MS.gene055892.t1 | MTR_5g015020 | 44.416 | 385 | 204 | 5 | 1 | 376 | 50 | 433 | 4.24e-128 | 377 |
| MS.gene055892.t1 | MTR_3g103550 | 45.550 | 382 | 204 | 1 | 1 | 378 | 48 | 429 | 1.58e-127 | 375 |
| MS.gene055892.t1 | MTR_8g098930 | 43.008 | 379 | 212 | 2 | 1 | 376 | 58 | 435 | 4.60e-123 | 364 |
| MS.gene055892.t1 | MTR_8g028600 | 41.755 | 376 | 218 | 1 | 1 | 376 | 57 | 431 | 9.76e-116 | 345 |
| MS.gene055892.t1 | MTR_8g101820 | 42.781 | 374 | 192 | 5 | 1 | 373 | 58 | 410 | 1.09e-115 | 343 |
| MS.gene055892.t1 | MTR_7g079080 | 41.910 | 377 | 217 | 2 | 1 | 376 | 57 | 432 | 8.43e-114 | 340 |
| MS.gene055892.t1 | MTR_7g079080 | 42.202 | 327 | 188 | 1 | 51 | 376 | 1 | 327 | 2.48e-101 | 305 |
| MS.gene055892.t1 | MTR_5g033230 | 24.289 | 387 | 241 | 13 | 24 | 374 | 93 | 463 | 2.19e-21 | 95.9 |
| MS.gene055892.t1 | MTR_5g033230 | 25.157 | 318 | 194 | 10 | 24 | 312 | 93 | 395 | 3.58e-19 | 89.4 |
| MS.gene055892.t1 | MTR_2g090730 | 44.086 | 93 | 47 | 2 | 9 | 101 | 13 | 100 | 5.46e-17 | 79.3 |
| MS.gene055892.t1 | MTR_8g023140 | 20.994 | 362 | 259 | 12 | 34 | 372 | 154 | 511 | 3.00e-14 | 74.3 |
| MS.gene055892.t1 | MTR_2g090615 | 28.846 | 208 | 120 | 6 | 34 | 234 | 81 | 267 | 1.62e-13 | 72.0 |
| MS.gene055892.t1 | MTR_7g106830 | 20.912 | 373 | 261 | 13 | 17 | 376 | 113 | 464 | 8.24e-13 | 69.7 |
| MS.gene055892.t1 | MTR_8g091280 | 20.833 | 336 | 245 | 9 | 17 | 344 | 115 | 437 | 5.23e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055892.t1 | AT5G51690 | 61.376 | 378 | 146 | 0 | 1 | 378 | 115 | 492 | 0.0 | 514 |
| MS.gene055892.t1 | AT5G51690 | 61.789 | 369 | 141 | 0 | 10 | 378 | 1 | 369 | 1.94e-179 | 503 |
| MS.gene055892.t1 | AT1G62960 | 55.789 | 380 | 159 | 4 | 1 | 378 | 180 | 552 | 2.92e-157 | 454 |
| MS.gene055892.t1 | AT4G37770 | 47.769 | 381 | 194 | 2 | 1 | 377 | 50 | 429 | 1.72e-135 | 395 |
| MS.gene055892.t1 | AT2G22810 | 46.073 | 382 | 200 | 3 | 1 | 377 | 50 | 430 | 7.82e-131 | 384 |
| MS.gene055892.t1 | AT3G49700 | 47.382 | 382 | 196 | 2 | 1 | 378 | 50 | 430 | 2.40e-130 | 382 |
| MS.gene055892.t1 | AT5G65800 | 45.288 | 382 | 204 | 2 | 1 | 378 | 50 | 430 | 1.67e-127 | 375 |
| MS.gene055892.t1 | AT4G26200 | 46.597 | 382 | 196 | 4 | 1 | 377 | 64 | 442 | 3.34e-125 | 368 |
| MS.gene055892.t1 | AT4G08040 | 44.327 | 379 | 209 | 2 | 1 | 378 | 48 | 425 | 5.72e-124 | 365 |
| MS.gene055892.t1 | AT4G11280 | 44.474 | 371 | 204 | 2 | 4 | 373 | 64 | 433 | 1.52e-123 | 365 |
| MS.gene055892.t1 | AT3G61510 | 40.849 | 377 | 218 | 3 | 1 | 376 | 57 | 429 | 7.68e-114 | 340 |
| MS.gene055892.t1 | AT1G01480 | 42.105 | 380 | 215 | 3 | 1 | 376 | 58 | 436 | 2.02e-113 | 340 |
| MS.gene055892.t1 | AT1G01480 | 42.424 | 330 | 186 | 2 | 51 | 376 | 1 | 330 | 5.69e-102 | 307 |
| MS.gene055892.t1 | AT1G70580 | 25.661 | 378 | 247 | 15 | 24 | 374 | 93 | 463 | 1.34e-22 | 99.4 |
| MS.gene055892.t1 | AT1G70580 | 25.661 | 378 | 247 | 15 | 24 | 374 | 93 | 463 | 1.34e-22 | 99.4 |
| MS.gene055892.t1 | AT1G70580 | 25.661 | 378 | 247 | 15 | 24 | 374 | 93 | 463 | 1.34e-22 | 99.4 |
| MS.gene055892.t1 | AT1G70580 | 25.661 | 378 | 247 | 15 | 24 | 374 | 93 | 463 | 1.34e-22 | 99.4 |
| MS.gene055892.t1 | AT1G23310 | 24.868 | 378 | 250 | 14 | 24 | 374 | 93 | 463 | 1.53e-22 | 99.4 |
| MS.gene055892.t1 | AT1G23310 | 29.834 | 181 | 122 | 4 | 24 | 202 | 93 | 270 | 3.30e-21 | 95.1 |
| MS.gene055892.t1 | AT1G72330 | 22.000 | 350 | 228 | 12 | 62 | 378 | 196 | 533 | 2.91e-18 | 86.7 |
| MS.gene055892.t1 | AT1G17290 | 21.693 | 378 | 249 | 12 | 34 | 378 | 173 | 536 | 1.12e-17 | 85.1 |
| MS.gene055892.t1 | AT1G72330 | 28.402 | 169 | 108 | 5 | 62 | 228 | 196 | 353 | 1.62e-17 | 84.0 |
| MS.gene055892.t1 | AT1G72330 | 21.488 | 363 | 227 | 12 | 62 | 378 | 196 | 546 | 8.21e-17 | 82.4 |
| MS.gene055892.t1 | AT5G36160 | 28.431 | 204 | 118 | 6 | 34 | 230 | 80 | 262 | 1.24e-14 | 75.5 |
| MS.gene055892.t1 | AT2G22250 | 21.011 | 376 | 257 | 13 | 18 | 377 | 69 | 420 | 2.62e-13 | 71.2 |
| MS.gene055892.t1 | AT2G22250 | 21.011 | 376 | 257 | 13 | 18 | 377 | 116 | 467 | 3.55e-13 | 71.2 |
| MS.gene055892.t1 | AT2G22250 | 21.011 | 376 | 257 | 13 | 18 | 377 | 116 | 467 | 3.55e-13 | 71.2 |
| MS.gene055892.t1 | AT2G24850 | 21.958 | 337 | 233 | 9 | 34 | 359 | 87 | 404 | 1.20e-11 | 66.2 |
| MS.gene055892.t1 | AT4G28420 | 24.121 | 199 | 137 | 5 | 34 | 232 | 98 | 282 | 2.17e-11 | 65.1 |
| MS.gene055892.t1 | AT4G28420 | 24.121 | 199 | 137 | 5 | 34 | 232 | 98 | 282 | 2.28e-11 | 65.5 |
| MS.gene055892.t1 | AT2G20610 | 23.116 | 199 | 139 | 4 | 34 | 232 | 104 | 288 | 6.75e-11 | 63.9 |
| MS.gene055892.t1 | AT2G20610 | 23.116 | 199 | 139 | 4 | 34 | 232 | 104 | 288 | 8.06e-11 | 63.5 |
Find 86 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATCAATTTGAGTATAAA+TGG | 0.236641 | 6.2:+64246392 | MS.gene055892:CDS |
| AGAAGACTGAAAAGCATTTC+TGG | 0.240255 | 6.2:-64249391 | None:intergenic |
| AGAAAGGAGAACTTGAATTA+TGG | 0.243969 | 6.2:+64249869 | MS.gene055892:CDS |
| TTCACACAACAAAACTGTTT+TGG | 0.255365 | 6.2:+64249606 | MS.gene055892:CDS |
| TCAAAAGACCTTTCGATTGC+TGG | 0.288659 | 6.2:+64249562 | MS.gene055892:CDS |
| AGCACACTTGATTCCTAGTT+TGG | 0.291076 | 6.2:-64249785 | None:intergenic |
| TTGTGTGGTGCAGTTGAGTT+TGG | 0.314151 | 6.2:+64246313 | None:intergenic |
| TTCCGATAAACGATTCATTC+AGG | 0.315188 | 6.2:+64249699 | MS.gene055892:CDS |
| GTCGATTACCCTGGATAATA+AGG | 0.320746 | 6.2:-64248935 | None:intergenic |
| AGAATTTGACCCGTCAAATA+TGG | 0.338798 | 6.2:+64248829 | MS.gene055892:CDS |
| GCGCCTTATCAATCATTTCA+TGG | 0.351831 | 6.2:+64246419 | MS.gene055892:CDS |
| TTCCTGAATGAATCGTTTAT+CGG | 0.368687 | 6.2:-64249701 | None:intergenic |
| GAAAGGAGAACTTGAATTAT+GGG | 0.372458 | 6.2:+64249870 | MS.gene055892:CDS |
| AACGATAGTATCTCAATTGC+AGG | 0.378929 | 6.2:-64248872 | None:intergenic |
| AGTTCTCCTTTCTCGCTATA+AGG | 0.388101 | 6.2:-64249859 | None:intergenic |
| GCACCCGTCTTATTCTATTT+CGG | 0.391124 | 6.2:-64249738 | None:intergenic |
| AAATCCCTCTAGTTATTGAT+AGG | 0.392176 | 6.2:+64249998 | MS.gene055892:CDS |
| CTCTAGTTATTGATAGGATT+CGG | 0.409149 | 6.2:+64250004 | MS.gene055892:CDS |
| CTTGACTAAATGCTTGTTCA+AGG | 0.411999 | 6.2:-64249294 | None:intergenic |
| GTCCCTACACCTTATTATCC+AGG | 0.416731 | 6.2:+64248926 | MS.gene055892:CDS |
| ATTGCTGACGAAGTATTTGC+AGG | 0.422387 | 6.2:+64249445 | MS.gene055892:CDS |
| AGTGATTATGCAGCTTTGAC+AGG | 0.425900 | 6.2:+64249191 | MS.gene055892:intron |
| ATCAGACCTTATAGCGAGAA+AGG | 0.438192 | 6.2:+64249853 | MS.gene055892:CDS |
| GCAGCGCCGGTATGTTCTGT+TGG | 0.448478 | 6.2:+64249812 | MS.gene055892:CDS |
| CAGCGCCGGTATGTTCTGTT+GGG | 0.459303 | 6.2:+64249813 | MS.gene055892:CDS |
| AATCCATGAAATGATTGATA+AGG | 0.464480 | 6.2:-64246422 | None:intergenic |
| ATGCAATGGCAAGCCGATCC+AGG | 0.473529 | 6.2:-64249928 | None:intergenic |
| GAACTTGGAGGGATCAATGA+TGG | 0.475995 | 6.2:+64246361 | MS.gene055892:CDS |
| GCTAAGATAAATATAACTCC+TGG | 0.479435 | 6.2:+64249910 | MS.gene055892:CDS |
| CCGTCTTATTCTATTTCGGT+TGG | 0.485045 | 6.2:-64249734 | None:intergenic |
| GGTGTCAGAATATTGCCAAC+AGG | 0.485404 | 6.2:-64249370 | None:intergenic |
| TCAGTACTTCGACAGTGAAC+AGG | 0.488659 | 6.2:-64249247 | None:intergenic |
| ATATTGCCAACAGGATTTGA+AGG | 0.489937 | 6.2:-64249361 | None:intergenic |
| ACGGGTGCACAATGAGTTTG+TGG | 0.494025 | 6.2:+64249753 | MS.gene055892:CDS |
| AGGGACGTAAGATGGCGTCC+AGG | 0.510730 | 6.2:+64249211 | MS.gene055892:CDS |
| GATGTTAGTACCATATTTGA+CGG | 0.511266 | 6.2:-64248839 | None:intergenic |
| TCAAATATGGTACTAACATC+GGG | 0.513697 | 6.2:+64248842 | MS.gene055892:CDS |
| GTTTGGATTTGATTGAGAAA+TGG | 0.516654 | 6.2:+64246330 | MS.gene055892:CDS |
| GAAATGGTTGGTGAAGAACT+TGG | 0.517138 | 6.2:+64246346 | MS.gene055892:CDS |
| AACTTGGAGGGATCAATGAT+GGG | 0.518854 | 6.2:+64246362 | MS.gene055892:CDS |
| TGAGATACTATCGTTCTGCT+TGG | 0.519831 | 6.2:+64248880 | MS.gene055892:CDS |
| GTGGATTGTTTAACCAAACT+AGG | 0.523731 | 6.2:+64249772 | MS.gene055892:CDS |
| GTATTTGCAGGCTCCACGTA+CGG | 0.524369 | 6.2:+64249457 | MS.gene055892:CDS |
| GCTTTGACAGGGACGTAAGA+TGG | 0.539978 | 6.2:+64249203 | MS.gene055892:intron |
| GATAAATATAACTCCTGGAT+CGG | 0.540003 | 6.2:+64249915 | MS.gene055892:CDS |
| TCGATTGCTGGATTTAGAGT+CGG | 0.540691 | 6.2:+64249574 | MS.gene055892:CDS |
| ACCATCCTGGTTCTATGCAA+TGG | 0.546338 | 6.2:-64249942 | None:intergenic |
| GATAATAAGGTGTAGGGACA+AGG | 0.549163 | 6.2:-64248922 | None:intergenic |
| CTCTAAATCCAGCAATCGAA+AGG | 0.554066 | 6.2:-64249570 | None:intergenic |
| TATTGCCAACAGGATTTGAA+GGG | 0.556392 | 6.2:-64249360 | None:intergenic |
| GTCAAATATGGTACTAACAT+CGG | 0.563753 | 6.2:+64248841 | MS.gene055892:CDS |
| ACAGGTATTAAGTCTATCCC+TGG | 0.566102 | 6.2:-64249229 | None:intergenic |
| TCCCTACACCTTATTATCCA+GGG | 0.567075 | 6.2:+64248927 | MS.gene055892:CDS |
| GGATTTGATTGAGAAATGGT+TGG | 0.569337 | 6.2:+64246334 | MS.gene055892:CDS |
| AAGTGTGCTAAGAGCAGCGC+CGG | 0.573828 | 6.2:+64249799 | MS.gene055892:CDS |
| GAAGTAACTAACCTCTGTGT+TGG | 0.575820 | 6.2:-64249670 | None:intergenic |
| GCCATTGCATAGAACCAGGA+TGG | 0.576139 | 6.2:+64249941 | MS.gene055892:CDS |
| ATATTCTGAATCGAGAACTT+CGG | 0.576552 | 6.2:-64249503 | None:intergenic |
| TTCTGTTGGGCTGATATGAG+TGG | 0.577234 | 6.2:+64249826 | MS.gene055892:CDS |
| GTGATTATGCAGCTTTGACA+GGG | 0.578099 | 6.2:+64249192 | MS.gene055892:intron |
| ATGTTAGTACCATATTTGAC+GGG | 0.579929 | 6.2:-64248838 | None:intergenic |
| AAACTCCTCGCTTCCGTACG+TGG | 0.582162 | 6.2:-64249470 | None:intergenic |
| ATGGTTGGTGAAGAACTTGG+AGG | 0.582724 | 6.2:+64246349 | MS.gene055892:CDS |
| ACCCTGGATAATAAGGTGTA+GGG | 0.583042 | 6.2:-64248928 | None:intergenic |
| CGAATCCTATCAATAACTAG+AGG | 0.584201 | 6.2:-64250003 | None:intergenic |
| TCGTTCTGCTTGGCAGACCA+TGG | 0.585867 | 6.2:+64248890 | MS.gene055892:CDS |
| AGCCGCGTTCATATAGTGTA+CGG | 0.586505 | 6.2:+64249535 | MS.gene055892:CDS |
| AAACGAGGAGTCAAAGTTCG+CGG | 0.587306 | 6.2:+64249322 | MS.gene055892:CDS |
| TACCCTGGATAATAAGGTGT+AGG | 0.592046 | 6.2:-64248929 | None:intergenic |
| CAACCGAAATAGAATAAGAC+GGG | 0.592241 | 6.2:+64249735 | MS.gene055892:CDS |
| AAACAAATACGAAACCATCC+TGG | 0.595378 | 6.2:-64249955 | None:intergenic |
| GGGACGTAAGATGGCGTCCA+GGG | 0.596829 | 6.2:+64249212 | MS.gene055892:CDS |
| TTGACTAAATGCTTGTTCAA+GGG | 0.597175 | 6.2:-64249293 | None:intergenic |
| TCGAACCCTTCAAATCCTGT+TGG | 0.599882 | 6.2:+64249355 | MS.gene055892:CDS |
| GGACAAGGAATGCATTTCCA+TGG | 0.601989 | 6.2:-64248907 | None:intergenic |
| GCTTGCCATTGCATAGAACC+AGG | 0.608825 | 6.2:+64249937 | MS.gene055892:CDS |
| TTTATGCATCAGGTTATGGG+AGG | 0.621158 | 6.2:+64248800 | MS.gene055892:CDS |
| AGGCTCCACGTACGGAAGCG+AGG | 0.623216 | 6.2:+64249465 | MS.gene055892:CDS |
| CCAACCGAAATAGAATAAGA+CGG | 0.633080 | 6.2:+64249734 | MS.gene055892:CDS |
| TGGTTGGTGAAGAACTTGGA+GGG | 0.633885 | 6.2:+64246350 | MS.gene055892:CDS |
| ATCAGCCCAACAGAACATAC+CGG | 0.634233 | 6.2:-64249818 | None:intergenic |
| GAATCCTATCAATAACTAGA+GGG | 0.646614 | 6.2:-64250002 | None:intergenic |
| TTTAGTCAAGCAAGAAAACG+AGG | 0.661177 | 6.2:+64249307 | MS.gene055892:CDS |
| ACTTGGAGGGATCAATGATG+GGG | 0.673771 | 6.2:+64246363 | MS.gene055892:CDS |
| GGCCGTACACTATATGAACG+CGG | 0.742883 | 6.2:-64249537 | None:intergenic |
| CTATATCTGCACCAACACAG+AGG | 0.756871 | 6.2:+64249659 | MS.gene055892:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAAGTTTATATTTAAA+TGG | + | chr6.2:64248439-64248458 | MS.gene055892:intron | 10.0% |
| !! | ATGTATAAAAACTATTTATA+AGG | + | chr6.2:64249089-64249108 | MS.gene055892:intron | 10.0% |
| !!! | TTTAAGATGAATAATTTTAT+AGG | + | chr6.2:64247696-64247715 | MS.gene055892:intron | 10.0% |
| !! | TGTTATCATTAAATATTAAG+TGG | + | chr6.2:64247384-64247403 | MS.gene055892:intron | 15.0% |
| !!! | TGATGATGATTTTTAAATTT+TGG | + | chr6.2:64247577-64247596 | MS.gene055892:intron | 15.0% |
| !! | AATAAAATGTTGTCAAATAG+CGG | - | chr6.2:64247212-64247231 | None:intergenic | 20.0% |
| !! | AATCAAATTAGATAGAAAGT+TGG | + | chr6.2:64248256-64248275 | MS.gene055892:intron | 20.0% |
| !! | AATTATTCATCTTAAACTTC+TGG | - | chr6.2:64247692-64247711 | None:intergenic | 20.0% |
| !! | ACAAAATTGCTAAAACTTAT+GGG | - | chr6.2:64247481-64247500 | None:intergenic | 20.0% |
| !! | ACAATATTAGAAAAAGAGTT+GGG | + | chr6.2:64246769-64246788 | MS.gene055892:intron | 20.0% |
| !! | AGAGATTAATGAGTTATATA+GGG | + | chr6.2:64246963-64246982 | MS.gene055892:intron | 20.0% |
| !! | GAAAATATGGATATTATTAG+AGG | - | chr6.2:64247747-64247766 | None:intergenic | 20.0% |
| !! | GATATCAATTTGAGTATAAA+TGG | + | chr6.2:64246392-64246411 | MS.gene055892:CDS | 20.0% |
| !! | TAATTAAAATTAAGCACAAG+AGG | - | chr6.2:64247535-64247554 | None:intergenic | 20.0% |
| !! | TACAAAATTGCTAAAACTTA+TGG | - | chr6.2:64247482-64247501 | None:intergenic | 20.0% |
| !! | TAGAGATTAATGAGTTATAT+AGG | + | chr6.2:64246962-64246981 | MS.gene055892:intron | 20.0% |
| !! | TGATACATAATAAGACATTA+TGG | + | chr6.2:64248585-64248604 | MS.gene055892:intron | 20.0% |
| !! | TGATATATCATTGAACATTA+TGG | + | chr6.2:64246989-64247008 | MS.gene055892:intron | 20.0% |
| !! | TTATTCTAAATAGTGTATCA+CGG | + | chr6.2:64247227-64247246 | MS.gene055892:intron | 20.0% |
| !!! | AACTAAAGGTTAAAGTATTA+AGG | + | chr6.2:64246936-64246955 | MS.gene055892:intron | 20.0% |
| !!! | GAACTCTAAAATTAAAATGT+CGG | - | chr6.2:64248160-64248179 | None:intergenic | 20.0% |
| !!! | TAAACTATTGATTCCTATTT+GGG | + | chr6.2:64248968-64248987 | MS.gene055892:intron | 20.0% |
| !!! | TAACTAAACTGCTTATTTTA+AGG | + | chr6.2:64247295-64247314 | MS.gene055892:intron | 20.0% |
| !!! | TGAATTTTGTTGATTTAGTT+AGG | + | chr6.2:64248709-64248728 | MS.gene055892:intron | 20.0% |
| !!! | TTAAACTATTGATTCCTATT+TGG | + | chr6.2:64248967-64248986 | MS.gene055892:intron | 20.0% |
| !!! | TTAATTTTGTTACAACTGAT+GGG | + | chr6.2:64248206-64248225 | MS.gene055892:intron | 20.0% |
| !!! | TTTAACCTTTAGTTTTTTCT+AGG | - | chr6.2:64246930-64246949 | None:intergenic | 20.0% |
| ! | AATCCATGAAATGATTGATA+AGG | - | chr6.2:64246425-64246444 | None:intergenic | 25.0% |
| ! | ACTTTGTACTAAATAGTGTA+CGG | + | chr6.2:64247856-64247875 | MS.gene055892:intron | 25.0% |
| ! | AGATCAAATAAAACCCAAAT+AGG | - | chr6.2:64248984-64249003 | None:intergenic | 25.0% |
| ! | ATCAACAACACTTAAATAAG+TGG | - | chr6.2:64247122-64247141 | None:intergenic | 25.0% |
| ! | ATTTATAATTCTATCACGTC+TGG | - | chr6.2:64246748-64246767 | None:intergenic | 25.0% |
| ! | CAACTATGTATAGGAAAATA+TGG | - | chr6.2:64247760-64247779 | None:intergenic | 25.0% |
| ! | CAATATTAGAAAAAGAGTTG+GGG | + | chr6.2:64246770-64246789 | MS.gene055892:intron | 25.0% |
| ! | CATTTCTCTTAAAAGAAGTT+AGG | + | chr6.2:64249017-64249036 | MS.gene055892:intron | 25.0% |
| ! | GACAATATTAGAAAAAGAGT+TGG | + | chr6.2:64246768-64246787 | MS.gene055892:intron | 25.0% |
| ! | TATATCATTGAACATTATGG+TGG | + | chr6.2:64246992-64247011 | MS.gene055892:intron | 25.0% |
| ! | TTAACAGACAAACAAAACAA+CGG | - | chr6.2:64248740-64248759 | None:intergenic | 25.0% |
| ! | TTATAGGATTTCTAACATTC+TGG | + | chr6.2:64247712-64247731 | MS.gene055892:intron | 25.0% |
| ! | TTTGTTTGTCTGTTAAACTT+TGG | + | chr6.2:64248744-64248763 | MS.gene055892:intron | 25.0% |
| !! | GTTAATTTTGTTACAACTGA+TGG | + | chr6.2:64248205-64248224 | MS.gene055892:intron | 25.0% |
| !! | TAATTTTGTTACAACTGATG+GGG | + | chr6.2:64248207-64248226 | MS.gene055892:intron | 25.0% |
| !! | TATTTAAGTGTTGTTGATCT+TGG | + | chr6.2:64247124-64247143 | MS.gene055892:intron | 25.0% |
| !!! | TGAAAATCTGCTCATTTTTT+TGG | - | chr6.2:64249638-64249657 | None:intergenic | 25.0% |
| !!! | TGTGTTGATATTTAGCTTTT+AGG | + | chr6.2:64247337-64247356 | MS.gene055892:intron | 25.0% |
| AAATCCCTCTAGTTATTGAT+AGG | + | chr6.2:64249998-64250017 | MS.gene055892:CDS | 30.0% | |
| AATAAGGAGAGTAGATAAGA+TGG | + | chr6.2:64246872-64246891 | MS.gene055892:intron | 30.0% | |
| ACAAGTCATTCTTGAAAAGA+TGG | + | chr6.2:64248283-64248302 | MS.gene055892:intron | 30.0% | |
| ACACAAAACAAGTTAGCATT+AGG | + | chr6.2:64248233-64248252 | MS.gene055892:intron | 30.0% | |
| AGAAAGGAGAACTTGAATTA+TGG | + | chr6.2:64249869-64249888 | MS.gene055892:CDS | 30.0% | |
| AGTTCAATAGTTAGAGAAAG+AGG | + | chr6.2:64248385-64248404 | MS.gene055892:intron | 30.0% | |
| ATATAACCTTGTTAGCTGAA+TGG | + | chr6.2:64247968-64247987 | MS.gene055892:intron | 30.0% | |
| ATATTCTGAATCGAGAACTT+CGG | - | chr6.2:64249506-64249525 | None:intergenic | 30.0% | |
| ATGTTAGTACCATATTTGAC+GGG | - | chr6.2:64248841-64248860 | None:intergenic | 30.0% | |
| CTCTAGTTATTGATAGGATT+CGG | + | chr6.2:64250004-64250023 | MS.gene055892:CDS | 30.0% | |
| CTTCTGGTATAACTGATTAA+AGG | - | chr6.2:64247676-64247695 | None:intergenic | 30.0% | |
| GAAAGGAGAACTTGAATTAT+GGG | + | chr6.2:64249870-64249889 | MS.gene055892:CDS | 30.0% | |
| GAAGACCTAGAAAAAACTAA+AGG | + | chr6.2:64246922-64246941 | MS.gene055892:intron | 30.0% | |
| GAATCCTATCAATAACTAGA+GGG | - | chr6.2:64250005-64250024 | None:intergenic | 30.0% | |
| GATAAATATAACTCCTGGAT+CGG | + | chr6.2:64249915-64249934 | MS.gene055892:CDS | 30.0% | |
| GATGTTAGTACCATATTTGA+CGG | - | chr6.2:64248842-64248861 | None:intergenic | 30.0% | |
| GCTAAGATAAATATAACTCC+TGG | + | chr6.2:64249910-64249929 | MS.gene055892:CDS | 30.0% | |
| GTCAAATATGGTACTAACAT+CGG | + | chr6.2:64248841-64248860 | MS.gene055892:CDS | 30.0% | |
| GTTATACAAAAATGTTGCTC+AGG | + | chr6.2:64246523-64246542 | MS.gene055892:intron | 30.0% | |
| GTTTGGATTTGATTGAGAAA+TGG | + | chr6.2:64246330-64246349 | MS.gene055892:CDS | 30.0% | |
| TAAAAACCATTCAGCTAACA+AGG | - | chr6.2:64247977-64247996 | None:intergenic | 30.0% | |
| TAAAACCGGTAATGTTGTAT+GGG | + | chr6.2:64246575-64246594 | MS.gene055892:intron | 30.0% | |
| TACCTGTAGATTCTGTAATA+AGG | + | chr6.2:64246856-64246875 | MS.gene055892:intron | 30.0% | |
| TCAAATATGGTACTAACATC+GGG | + | chr6.2:64248842-64248861 | MS.gene055892:CDS | 30.0% | |
| TGTCTAATGATCACAGAAAA+TGG | - | chr6.2:64248565-64248584 | None:intergenic | 30.0% | |
| TTATCATACAGCTGTAAAAC+CGG | + | chr6.2:64246561-64246580 | MS.gene055892:intron | 30.0% | |
| TTCCTGAATGAATCGTTTAT+CGG | - | chr6.2:64249704-64249723 | None:intergenic | 30.0% | |
| TTGACTAAATGCTTGTTCAA+GGG | - | chr6.2:64249296-64249315 | None:intergenic | 30.0% | |
| TTGTCAAATAGCTACTATTG+TGG | + | chr6.2:64248508-64248527 | MS.gene055892:intron | 30.0% | |
| ! | AATTTTGTTACAACTGATGG+GGG | + | chr6.2:64248208-64248227 | MS.gene055892:intron | 30.0% |
| ! | AGATTTTATGCATCAGGTTA+TGG | + | chr6.2:64248796-64248815 | MS.gene055892:CDS | 30.0% |
| ! | ATCTAACCTATAGTTTTCCA+TGG | - | chr6.2:64248415-64248434 | None:intergenic | 30.0% |
| ! | GATTTTATGCATCAGGTTAT+GGG | + | chr6.2:64248797-64248816 | MS.gene055892:CDS | 30.0% |
| ! | TGCATTGTATTTTGCTTAGA+GGG | + | chr6.2:64247071-64247090 | MS.gene055892:intron | 30.0% |
| ! | TTCACACAACAAAACTGTTT+TGG | + | chr6.2:64249606-64249625 | MS.gene055892:CDS | 30.0% |
| ! | TTTTACAACTATATCGTTCG+AGG | + | chr6.2:64249975-64249994 | MS.gene055892:CDS | 30.0% |
| !!! | CACTTATTTTACTCTCATGT+TGG | - | chr6.2:64246693-64246712 | None:intergenic | 30.0% |
| AAACAAATACGAAACCATCC+TGG | - | chr6.2:64249958-64249977 | None:intergenic | 35.0% | |
| AACGATAGTATCTCAATTGC+AGG | - | chr6.2:64248875-64248894 | None:intergenic | 35.0% | |
| AAGGTTAAACCACTAATGTG+TGG | - | chr6.2:64247182-64247201 | None:intergenic | 35.0% | |
| AATAGCGACTATAGCACTAT+AGG | - | chr6.2:64247829-64247848 | None:intergenic | 35.0% | |
| AGAATTTGACCCGTCAAATA+TGG | + | chr6.2:64248829-64248848 | MS.gene055892:CDS | 35.0% | |
| AGCACCTATAGTACAAAAGA+CGG | + | chr6.2:64246794-64246813 | MS.gene055892:intron | 35.0% | |
| AGTCAAATCACTATAGGCAA+AGG | + | chr6.2:64246900-64246919 | MS.gene055892:intron | 35.0% | |
| ATATTGCCAACAGGATTTGA+AGG | - | chr6.2:64249364-64249383 | None:intergenic | 35.0% | |
| CAACCGAAATAGAATAAGAC+GGG | + | chr6.2:64249735-64249754 | MS.gene055892:CDS | 35.0% | |
| CACAATGAGAATAGGTGTTA+TGG | + | chr6.2:64247429-64247448 | MS.gene055892:intron | 35.0% | |
| CACGATTCACAACTATGTAT+AGG | - | chr6.2:64247769-64247788 | None:intergenic | 35.0% | |
| CACTATTAAGGTAGACTAGA+TGG | + | chr6.2:64248357-64248376 | MS.gene055892:intron | 35.0% | |
| CCAACCGAAATAGAATAAGA+CGG | + | chr6.2:64249734-64249753 | MS.gene055892:CDS | 35.0% | |
| CGAATCCTATCAATAACTAG+AGG | - | chr6.2:64250006-64250025 | None:intergenic | 35.0% | |
| CGATAGTAAAATAAGCGTAG+AGG | + | chr6.2:64246627-64246646 | MS.gene055892:intron | 35.0% | |
| CTATACATAGTTGTGAATCG+TGG | + | chr6.2:64247767-64247786 | MS.gene055892:intron | 35.0% | |
| CTCCTTATTACAGAATCTAC+AGG | - | chr6.2:64246861-64246880 | None:intergenic | 35.0% | |
| CTTGACTAAATGCTTGTTCA+AGG | - | chr6.2:64249297-64249316 | None:intergenic | 35.0% | |
| GGATTTGATTGAGAAATGGT+TGG | + | chr6.2:64246334-64246353 | MS.gene055892:CDS | 35.0% | |
| GGTTATATCTCAACTAGCAT+TGG | - | chr6.2:64247956-64247975 | None:intergenic | 35.0% | |
| GTAAAACCGGTAATGTTGTA+TGG | + | chr6.2:64246574-64246593 | MS.gene055892:intron | 35.0% | |
| TAGAGATGAAAATGTTGCGT+TGG | + | chr6.2:64246713-64246732 | MS.gene055892:intron | 35.0% | |
| TATTGCCAACAGGATTTGAA+GGG | - | chr6.2:64249363-64249382 | None:intergenic | 35.0% | |
| TGTTGTCAAATAGTGGCTAT+AGG | - | chr6.2:64247916-64247935 | None:intergenic | 35.0% | |
| TTATTATCCAGGGTAATCGA+CGG | + | chr6.2:64248937-64248956 | MS.gene055892:intron | 35.0% | |
| TTCCGATAAACGATTCATTC+AGG | + | chr6.2:64249699-64249718 | MS.gene055892:CDS | 35.0% | |
| TTGGAGAATTGAAGTGTGAA+GGG | + | chr6.2:64247596-64247615 | MS.gene055892:intron | 35.0% | |
| TTGTACTAAATAGTGTACGG+CGG | + | chr6.2:64247859-64247878 | MS.gene055892:intron | 35.0% | |
| TTTAGTCAAGCAAGAAAACG+AGG | + | chr6.2:64249307-64249326 | MS.gene055892:CDS | 35.0% | |
| TTTGGAGAATTGAAGTGTGA+AGG | + | chr6.2:64247595-64247614 | MS.gene055892:intron | 35.0% | |
| TTTGTCCCATACAACATTAC+CGG | - | chr6.2:64246583-64246602 | None:intergenic | 35.0% | |
| ! | AAAACCTTTTCGCACTAGAT+AGG | - | chr6.2:64248622-64248641 | None:intergenic | 35.0% |
| ! | AAACCTTTTCGCACTAGATA+GGG | - | chr6.2:64248621-64248640 | None:intergenic | 35.0% |
| ! | CAATCGAAAGGTCTTTTGAT+AGG | - | chr6.2:64249561-64249580 | None:intergenic | 35.0% |
| ! | CTGCATTGTATTTTGCTTAG+AGG | + | chr6.2:64247070-64247089 | MS.gene055892:intron | 35.0% |
| ! | GTGGATTGTTTAACCAAACT+AGG | + | chr6.2:64249772-64249791 | MS.gene055892:CDS | 35.0% |
| ! | TAGTGCGAAAAGGTTTTTGA+CGG | + | chr6.2:64248625-64248644 | MS.gene055892:intron | 35.0% |
| ! | TCTACCGTCTTTTGTACTAT+AGG | - | chr6.2:64246801-64246820 | None:intergenic | 35.0% |
| !! | AACTAGCATTGGCTCAAATA+TGG | - | chr6.2:64247945-64247964 | None:intergenic | 35.0% |
| !! | ACTAGCATTGGCTCAAATAT+GGG | - | chr6.2:64247944-64247963 | None:intergenic | 35.0% |
| !! | AGAAGACTGAAAAGCATTTC+TGG | - | chr6.2:64249394-64249413 | None:intergenic | 35.0% |
| !! | GGTTTGTTGCATCAAGATAA+AGG | - | chr6.2:64248139-64248158 | None:intergenic | 35.0% |
| !!! | GTTGTTTGCTATGATTTTGC+AGG | + | chr6.2:64248766-64248785 | MS.gene055892:intron | 35.0% |
| AAAAATGTTGCTCAGGCTGA+AGG | + | chr6.2:64246530-64246549 | MS.gene055892:intron | 40.0% | |
| AAAATGTTGCTCAGGCTGAA+GGG | + | chr6.2:64246531-64246550 | MS.gene055892:intron | 40.0% | |
| AACTTGGAGGGATCAATGAT+GGG | + | chr6.2:64246362-64246381 | MS.gene055892:CDS | 40.0% | |
| ACAGGTATTAAGTCTATCCC+TGG | - | chr6.2:64249232-64249251 | None:intergenic | 40.0% | |
| ACCCTGGATAATAAGGTGTA+GGG | - | chr6.2:64248931-64248950 | None:intergenic | 40.0% | |
| AGACGGTAGAAACTTTGCTT+AGG | + | chr6.2:64246811-64246830 | MS.gene055892:intron | 40.0% | |
| AGCACACTTGATTCCTAGTT+TGG | - | chr6.2:64249788-64249807 | None:intergenic | 40.0% | |
| AGTTCTCCTTTCTCGCTATA+AGG | - | chr6.2:64249862-64249881 | None:intergenic | 40.0% | |
| ATCAGACCTTATAGCGAGAA+AGG | + | chr6.2:64249853-64249872 | MS.gene055892:CDS | 40.0% | |
| CAAATTGCACCACACATTAG+TGG | + | chr6.2:64247170-64247189 | MS.gene055892:intron | 40.0% | |
| CTCTAAATCCAGCAATCGAA+AGG | - | chr6.2:64249573-64249592 | None:intergenic | 40.0% | |
| CTTATCTCACTAAGTGAGGT+CGG | - | chr6.2:64247034-64247053 | None:intergenic | 40.0% | |
| GAAACTTTGCTTAGGTGGTT+TGG | + | chr6.2:64246819-64246838 | MS.gene055892:intron | 40.0% | |
| GAAGTAACTAACCTCTGTGT+TGG | - | chr6.2:64249673-64249692 | None:intergenic | 40.0% | |
| GAATCGTGGAAAATAGCGAT+TGG | + | chr6.2:64247781-64247800 | MS.gene055892:intron | 40.0% | |
| GAGAGCAGTCAAATCACTAT+AGG | + | chr6.2:64246894-64246913 | MS.gene055892:intron | 40.0% | |
| GATAATAAGGTGTAGGGACA+AGG | - | chr6.2:64248925-64248944 | None:intergenic | 40.0% | |
| GATGAAAATGTTGCGTTGGA+TGG | + | chr6.2:64246717-64246736 | MS.gene055892:intron | 40.0% | |
| GCGCCTTATCAATCATTTCA+TGG | + | chr6.2:64246419-64246438 | MS.gene055892:CDS | 40.0% | |
| GGAAGACCATGGAAAACTAT+AGG | + | chr6.2:64248406-64248425 | MS.gene055892:intron | 40.0% | |
| GTCGATTACCCTGGATAATA+AGG | - | chr6.2:64248938-64248957 | None:intergenic | 40.0% | |
| GTGTGTAGCACAATGAGAAT+AGG | + | chr6.2:64247421-64247440 | MS.gene055892:intron | 40.0% | |
| TACCCTGGATAATAAGGTGT+AGG | - | chr6.2:64248932-64248951 | None:intergenic | 40.0% | |
| TCAAAAGACCTTTCGATTGC+TGG | + | chr6.2:64249562-64249581 | MS.gene055892:CDS | 40.0% | |
| TCACTTAGTGAGATAAGGCT+TGG | + | chr6.2:64247037-64247056 | MS.gene055892:intron | 40.0% | |
| TCCCTACACCTTATTATCCA+GGG | + | chr6.2:64248927-64248946 | MS.gene055892:CDS | 40.0% | |
| TGAGATACTATCGTTCTGCT+TGG | + | chr6.2:64248880-64248899 | MS.gene055892:CDS | 40.0% | |
| TGTTGTATGGGACAAAGTGT+TGG | + | chr6.2:64246587-64246606 | MS.gene055892:intron | 40.0% | |
| TTAGAGAAAGAGGAAGACCA+TGG | + | chr6.2:64248395-64248414 | MS.gene055892:intron | 40.0% | |
| TTTATGCATCAGGTTATGGG+AGG | + | chr6.2:64248800-64248819 | MS.gene055892:CDS | 40.0% | |
| ! | AAGCCTTATCTCACTAAGTG+AGG | - | chr6.2:64247038-64247057 | None:intergenic | 40.0% |
| ! | AGTGATTATGCAGCTTTGAC+AGG | + | chr6.2:64249191-64249210 | MS.gene055892:intron | 40.0% |
| ! | ATTGCTGACGAAGTATTTGC+AGG | + | chr6.2:64249445-64249464 | MS.gene055892:CDS | 40.0% |
| ! | CCGTCTTATTCTATTTCGGT+TGG | - | chr6.2:64249737-64249756 | None:intergenic | 40.0% |
| ! | GCACCCGTCTTATTCTATTT+CGG | - | chr6.2:64249741-64249760 | None:intergenic | 40.0% |
| ! | GTGATTATGCAGCTTTGACA+GGG | + | chr6.2:64249192-64249211 | MS.gene055892:intron | 40.0% |
| ! | GTTCTTTGTTGTCTTCGTAC+AGG | + | chr6.2:64248176-64248195 | MS.gene055892:intron | 40.0% |
| ! | GTTGGCAGATTTTATGCATC+AGG | + | chr6.2:64248790-64248809 | MS.gene055892:CDS | 40.0% |
| ! | TCGATTGCTGGATTTAGAGT+CGG | + | chr6.2:64249574-64249593 | MS.gene055892:CDS | 40.0% |
| !! | GAAATGGTTGGTGAAGAACT+TGG | + | chr6.2:64246346-64246365 | MS.gene055892:CDS | 40.0% |
| !! | GACTCGTAGAAGCACTATTA+AGG | + | chr6.2:64248345-64248364 | MS.gene055892:intron | 40.0% |
| AAACCACCCAAGACAAGACT+CGG | - | chr6.2:64248309-64248328 | None:intergenic | 45.0% | |
| AAACGAGGAGTCAAAGTTCG+CGG | + | chr6.2:64249322-64249341 | MS.gene055892:CDS | 45.0% | |
| ACTTGGAGGGATCAATGATG+GGG | + | chr6.2:64246363-64246382 | MS.gene055892:CDS | 45.0% | |
| AGCCGCGTTCATATAGTGTA+CGG | + | chr6.2:64249535-64249554 | MS.gene055892:CDS | 45.0% | |
| ATCAGCCCAACAGAACATAC+CGG | - | chr6.2:64249821-64249840 | None:intergenic | 45.0% | |
| CGACCTCACTTAGTGAGATA+AGG | + | chr6.2:64247032-64247051 | MS.gene055892:intron | 45.0% | |
| CGGTAGAAACTTTGCTTAGG+TGG | + | chr6.2:64246814-64246833 | MS.gene055892:intron | 45.0% | |
| CTATATCTGCACCAACACAG+AGG | + | chr6.2:64249659-64249678 | MS.gene055892:CDS | 45.0% | |
| GAACTTGGAGGGATCAATGA+TGG | + | chr6.2:64246361-64246380 | MS.gene055892:CDS | 45.0% | |
| GCTATAGCGCATCGAACATT+AGG | - | chr6.2:64248465-64248484 | None:intergenic | 45.0% | |
| GGACAAGGAATGCATTTCCA+TGG | - | chr6.2:64248910-64248929 | None:intergenic | 45.0% | |
| GGAGCAGTGTTGTCAAATAG+TGG | - | chr6.2:64247923-64247942 | None:intergenic | 45.0% | |
| GGTGTCAGAATATTGCCAAC+AGG | - | chr6.2:64249373-64249392 | None:intergenic | 45.0% | |
| GTCAAATAGCGGTTAGAGCA+AGG | - | chr6.2:64247201-64247220 | None:intergenic | 45.0% | |
| GTCCCTACACCTTATTATCC+AGG | + | chr6.2:64248926-64248945 | MS.gene055892:CDS | 45.0% | |
| GTTGTCTTCGTACAGGAAAC+AGG | + | chr6.2:64248183-64248202 | MS.gene055892:intron | 45.0% | |
| TAGAGGGAATGCATGTGTTG+TGG | + | chr6.2:64247087-64247106 | MS.gene055892:intron | 45.0% | |
| TCAGTACTTCGACAGTGAAC+AGG | - | chr6.2:64249250-64249269 | None:intergenic | 45.0% | |
| TCGAACCCTTCAAATCCTGT+TGG | + | chr6.2:64249355-64249374 | MS.gene055892:CDS | 45.0% | |
| TGACCCTATCTAGTGCGAAA+AGG | + | chr6.2:64248615-64248634 | MS.gene055892:intron | 45.0% | |
| TTCTGTTGGGCTGATATGAG+TGG | + | chr6.2:64249826-64249845 | MS.gene055892:CDS | 45.0% | |
| ! | GATGTTGCATTGGAGAGTGT+TGG | + | chr6.2:64246656-64246675 | MS.gene055892:intron | 45.0% |
| ! | GTGTTGTTGATCTTGGATCG+CGG | + | chr6.2:64247131-64247150 | MS.gene055892:intron | 45.0% |
| ! | TGCGAAAAGGTTTTTGACGG+TGG | + | chr6.2:64248628-64248647 | MS.gene055892:intron | 45.0% |
| ! | TGCTATGATTTTGCAGGCGT+TGG | + | chr6.2:64248772-64248791 | MS.gene055892:intron | 45.0% |
| !! | ACCATCCTGGTTCTATGCAA+TGG | - | chr6.2:64249945-64249964 | None:intergenic | 45.0% |
| !! | ATGGTTGGTGAAGAACTTGG+AGG | + | chr6.2:64246349-64246368 | MS.gene055892:CDS | 45.0% |
| !! | GTATGGGACAAAGTGTTGGT+CGG | + | chr6.2:64246591-64246610 | MS.gene055892:intron | 45.0% |
| !! | TATGGGACAAAGTGTTGGTC+GGG | + | chr6.2:64246592-64246611 | MS.gene055892:intron | 45.0% |
| !! | TGGTTGGTGAAGAACTTGGA+GGG | + | chr6.2:64246350-64246369 | MS.gene055892:CDS | 45.0% |
| !! | TTGCATTGGAGAGTGTTGGT+CGG | + | chr6.2:64246660-64246679 | MS.gene055892:intron | 45.0% |
| !!! | TGGGTGGTTTTGACATCTGT+GGG | + | chr6.2:64248319-64248338 | MS.gene055892:intron | 45.0% |
| !!! | TTGGGTGGTTTTGACATCTG+TGG | + | chr6.2:64248318-64248337 | MS.gene055892:intron | 45.0% |
| !! | TAAAAATATCTTAATTAAAA+AGG | + | chr6.2:64249054-64249073 | MS.gene055892:intron | 5.0% |
| !!! | CTTAATTTTAATTATTATTA+CGG | + | chr6.2:64247541-64247560 | MS.gene055892:intron | 5.0% |
| ACGGGTGCACAATGAGTTTG+TGG | + | chr6.2:64249753-64249772 | MS.gene055892:CDS | 50.0% | |
| AGAGTGCAGACCACATCACT+TGG | + | chr6.2:64247635-64247654 | MS.gene055892:intron | 50.0% | |
| CAGACCACATCACTTGGTCA+TGG | + | chr6.2:64247641-64247660 | MS.gene055892:intron | 50.0% | |
| GAGGAGATGCGATGTTGCAT+TGG | + | chr6.2:64246646-64246665 | MS.gene055892:intron | 50.0% | |
| GCCATTGCATAGAACCAGGA+TGG | + | chr6.2:64249941-64249960 | MS.gene055892:CDS | 50.0% | |
| GCTTGCCATTGCATAGAACC+AGG | + | chr6.2:64249937-64249956 | MS.gene055892:CDS | 50.0% | |
| GCTTTGACAGGGACGTAAGA+TGG | + | chr6.2:64249203-64249222 | MS.gene055892:intron | 50.0% | |
| GGCCGTACACTATATGAACG+CGG | - | chr6.2:64249540-64249559 | None:intergenic | 50.0% | |
| GTATTTGCAGGCTCCACGTA+CGG | + | chr6.2:64249457-64249476 | MS.gene055892:CDS | 50.0% | |
| GTCTCCATGACCAAGTGATG+TGG | - | chr6.2:64247648-64247667 | None:intergenic | 50.0% | |
| ! | AAGATGGCCGAGTCTTGTCT+TGG | + | chr6.2:64248299-64248318 | MS.gene055892:intron | 50.0% |
| ! | AGATGGCCGAGTCTTGTCTT+GGG | + | chr6.2:64248300-64248319 | MS.gene055892:intron | 50.0% |
| !!! | GGGTGGTTTTGACATCTGTG+GGG | + | chr6.2:64248320-64248339 | MS.gene055892:intron | 50.0% |
| AAACTCCTCGCTTCCGTACG+TGG | - | chr6.2:64249473-64249492 | None:intergenic | 55.0% | |
| AAGTGTGCTAAGAGCAGCGC+CGG | + | chr6.2:64249799-64249818 | MS.gene055892:CDS | 55.0% | |
| ACTAAGTGAGGTCGGCTACG+TGG | - | chr6.2:64247026-64247045 | None:intergenic | 55.0% | |
| ATGCAATGGCAAGCCGATCC+AGG | - | chr6.2:64249931-64249950 | None:intergenic | 55.0% | |
| TCGTTCTGCTTGGCAGACCA+TGG | + | chr6.2:64248890-64248909 | MS.gene055892:CDS | 55.0% | |
| !! | CAGCGCCGGTATGTTCTGTT+GGG | + | chr6.2:64249813-64249832 | MS.gene055892:CDS | 55.0% |
| !! | GAAAGTGCCGTCGATTACCC+TGG | - | chr6.2:64248947-64248966 | None:intergenic | 55.0% |
| AGGGACGTAAGATGGCGTCC+AGG | + | chr6.2:64249211-64249230 | MS.gene055892:CDS | 60.0% | |
| GGGACGTAAGATGGCGTCCA+GGG | + | chr6.2:64249212-64249231 | MS.gene055892:CDS | 60.0% | |
| ! | TGGCCGAGTCTTGTCTTGGG+TGG | + | chr6.2:64248303-64248322 | MS.gene055892:intron | 60.0% |
| !! | GCAGCGCCGGTATGTTCTGT+TGG | + | chr6.2:64249812-64249831 | MS.gene055892:CDS | 60.0% |
| AGGCTCCACGTACGGAAGCG+AGG | + | chr6.2:64249465-64249484 | MS.gene055892:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 64246326 | 64250042 | 64246326 | ID=MS.gene055892 |
| chr6.2 | mRNA | 64246326 | 64250042 | 64246326 | ID=MS.gene055892.t1;Parent=MS.gene055892 |
| chr6.2 | exon | 64246326 | 64246460 | 64246326 | ID=MS.gene055892.t1.exon1;Parent=MS.gene055892.t1 |
| chr6.2 | CDS | 64246326 | 64246460 | 64246326 | ID=cds.MS.gene055892.t1;Parent=MS.gene055892.t1 |
| chr6.2 | exon | 64248788 | 64248948 | 64248788 | ID=MS.gene055892.t1.exon2;Parent=MS.gene055892.t1 |
| chr6.2 | CDS | 64248788 | 64248948 | 64248788 | ID=cds.MS.gene055892.t1;Parent=MS.gene055892.t1 |
| chr6.2 | exon | 64249204 | 64250042 | 64249204 | ID=MS.gene055892.t1.exon3;Parent=MS.gene055892.t1 |
| chr6.2 | CDS | 64249204 | 64250042 | 64249204 | ID=cds.MS.gene055892.t1;Parent=MS.gene055892.t1 |
| Gene Sequence |
| Protein sequence |
