Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66443.t1 | XP_003618118.2 | 70.9 | 962 | 116 | 13 | 28 | 836 | 51 | 1001 | 0.00E+00 | 1188.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66443.t1 | Q9HGL2 | 36.6 | 101 | 56 | 1 | 248 | 340 | 242 | 342 | 3.5e-11 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66443.t1 | G7KFG0 | 70.9 | 962 | 116 | 13 | 28 | 836 | 51 | 1001 | 0.0e+00 | 1188.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66443 | MS.gene071439 | PPI |
| MS.gene071437 | MS.gene66443 | PPI |
| MS.gene34936 | MS.gene66443 | PPI |
| MS.gene023295 | MS.gene66443 | PPI |
| MS.gene66443 | MS.gene08324 | PPI |
| MS.gene66443 | MS.gene071438 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66443.t1 | MTR_5g099170 | 70.894 | 962 | 116 | 13 | 28 | 836 | 51 | 1001 | 0.0 | 1209 |
| MS.gene66443.t1 | MTR_1g018480 | 76.806 | 789 | 79 | 7 | 126 | 836 | 1 | 763 | 0.0 | 1150 |
| MS.gene66443.t1 | MTR_3g115640 | 31.766 | 957 | 402 | 33 | 79 | 836 | 276 | 1180 | 1.44e-94 | 322 |
| MS.gene66443.t1 | MTR_3g115640 | 59.420 | 69 | 25 | 1 | 28 | 96 | 47 | 112 | 2.75e-15 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66443.t1 | AT1G20760 | 32.945 | 1029 | 413 | 31 | 28 | 836 | 48 | 1019 | 5.17e-117 | 380 |
| MS.gene66443.t1 | AT1G21630 | 33.048 | 1050 | 409 | 37 | 28 | 832 | 50 | 1050 | 1.03e-103 | 347 |
| MS.gene66443.t1 | AT1G21630 | 33.542 | 957 | 375 | 30 | 28 | 755 | 50 | 974 | 2.74e-103 | 346 |
| MS.gene66443.t1 | AT1G21630 | 32.063 | 630 | 261 | 23 | 28 | 496 | 50 | 673 | 1.20e-53 | 202 |
| MS.gene66443.t1 | AT1G21630 | 36.324 | 457 | 201 | 18 | 423 | 832 | 666 | 1079 | 5.78e-43 | 169 |
| MS.gene66443.t1 | AT1G21630 | 32.063 | 630 | 261 | 23 | 28 | 496 | 50 | 673 | 1.99e-53 | 202 |
| MS.gene66443.t1 | AT1G21630 | 38.462 | 364 | 167 | 11 | 423 | 755 | 666 | 1003 | 1.48e-42 | 168 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCCATGACTGGAATTT+TGG | 0.071310 | 1.4:+4741058 | None:intergenic |
| TTAGGCGACGCTACAAATTT+TGG | 0.153429 | 1.4:+4737007 | None:intergenic |
| GACTGATTTCCCCAAGTTAA+AGG | 0.200006 | 1.4:+4741307 | None:intergenic |
| ATCCATACCTTTGGGTTTCT+TGG | 0.207896 | 1.4:+4736771 | None:intergenic |
| CCCAATCAGCAGCTCCTTCT+TGG | 0.235708 | 1.4:+4738344 | None:intergenic |
| TCTGCCATTCTTCCTGTATC+TGG | 0.243803 | 1.4:-4741956 | MS.gene66443:CDS |
| AAATCAAGAAGAATGTTATT+TGG | 0.245195 | 1.4:+4741364 | None:intergenic |
| GACAACTATTTCTTTAGTTC+TGG | 0.248675 | 1.4:-4734642 | MS.gene66443:CDS |
| CTAGAAAAGGATCTGATAAT+TGG | 0.254950 | 1.4:-4734272 | MS.gene66443:CDS |
| CTTGGGTGTCATCTTGATTA+CGG | 0.274367 | 1.4:+4736789 | None:intergenic |
| CCAGGCGAACTGTGCATATT+AGG | 0.275868 | 1.4:+4741833 | None:intergenic |
| GTGTCGAAGGTTCCCCAATT+AGG | 0.276032 | 1.4:+4735865 | None:intergenic |
| GACTCGGATCTCTTTGGCTC+TGG | 0.276366 | 1.4:-4734327 | MS.gene66443:CDS |
| TACAGTAGTTACCTTCTTAT+CGG | 0.283458 | 1.4:+4740965 | None:intergenic |
| GTCTCCTTCTTCCAAGGTTC+CGG | 0.300179 | 1.4:-4742698 | MS.gene66443:intron |
| TTGGGTGTCATCTTGATTAC+GGG | 0.301965 | 1.4:+4736790 | None:intergenic |
| ATGATGATATCGATTCAGTT+TGG | 0.302385 | 1.4:-4735840 | MS.gene66443:CDS |
| AACTGAAACCACTGGTCTTC+AGG | 0.302436 | 1.4:+4734565 | None:intergenic |
| CTCTCTAATGAAGTCCTAAA+AGG | 0.304432 | 1.4:+4734303 | None:intergenic |
| TTTGATGACTCGGATCTCTT+TGG | 0.311897 | 1.4:-4734333 | MS.gene66443:CDS |
| TCTGACTTATCATCACTCTT+AGG | 0.312494 | 1.4:+4736989 | None:intergenic |
| AACTACTTTCCTGCTGTTGC+TGG | 0.321396 | 1.4:-4742274 | MS.gene66443:CDS |
| TCTGACATTCGAAAGACTTC+TGG | 0.321969 | 1.4:-4736827 | MS.gene66443:CDS |
| GTCCAACAGGTGCGGATGGC+GGG | 0.322403 | 1.4:+4742311 | None:intergenic |
| TCCTCCGCCTTGCCTGCTTA+TGG | 0.325960 | 1.4:-4742235 | MS.gene66443:CDS |
| TGTGCAACCGTGACAAGTTT+AGG | 0.327560 | 1.4:+4742439 | None:intergenic |
| TGATGATATCGATTCAGTTT+GGG | 0.337637 | 1.4:-4735839 | MS.gene66443:CDS |
| GGCAAGGCGGAGGAAGTTGC+AGG | 0.341202 | 1.4:+4742244 | None:intergenic |
| AATGAACTGTGCAAGAAGTA+TGG | 0.345060 | 1.4:-4739364 | MS.gene66443:CDS |
| ACCAGTCTCTAGGCCTTTGC+GGG | 0.349117 | 1.4:+4734496 | None:intergenic |
| CCTCCCTGTGTCGCTCCATT+AGG | 0.351212 | 1.4:+4741410 | None:intergenic |
| TTGTATTGCATTGCACCTAA+TGG | 0.351676 | 1.4:-4741425 | MS.gene66443:CDS |
| AATGCACTGTAGACTATTTC+AGG | 0.357919 | 1.4:+4742397 | None:intergenic |
| TCCATACCTTTGGGTTTCTT+GGG | 0.362856 | 1.4:+4736772 | None:intergenic |
| CAGCAAGTGATGACTGGATC+TGG | 0.364695 | 1.4:-4741173 | MS.gene66443:CDS |
| CTCCAACGACCACACGTTAG+AGG | 0.367571 | 1.4:-4742190 | MS.gene66443:CDS |
| CGATGGACATGTTTCTTAGT+TGG | 0.371155 | 1.4:-4741675 | MS.gene66443:CDS |
| CGGACAGAATCAAAACTTAC+TGG | 0.372848 | 1.4:+4734390 | None:intergenic |
| GAACCAGCATGCCTCCATTC+AGG | 0.374679 | 1.4:-4741858 | MS.gene66443:CDS |
| GCTTCAACTCAGGAGGAGTT+TGG | 0.378393 | 1.4:-4742154 | MS.gene66443:CDS |
| TGGACTTTCAGTCAGATTGC+AGG | 0.382374 | 1.4:-4741813 | MS.gene66443:CDS |
| CAATTCTATCCTTGATGAAC+TGG | 0.388302 | 1.4:-4739398 | MS.gene66443:CDS |
| GGTTGTGAACACAAAAGCTT+TGG | 0.390128 | 1.4:-4737041 | MS.gene66443:CDS |
| TGCTGATTGGGATGAGGATT+GGG | 0.390477 | 1.4:-4738332 | MS.gene66443:CDS |
| ATCTCCTTAGTCCTTTAACT+TGG | 0.394574 | 1.4:-4741318 | MS.gene66443:CDS |
| CCTGCTTATGGCAACATGGC+TGG | 0.406565 | 1.4:-4742223 | MS.gene66443:CDS |
| TCTCCTTAGTCCTTTAACTT+GGG | 0.407046 | 1.4:-4741317 | MS.gene66443:CDS |
| GGCTTCCTCGGTTATCAACT+TGG | 0.408259 | 1.4:+4739712 | None:intergenic |
| TTTCTTTAGTTCTGGAGACC+TGG | 0.408705 | 1.4:-4734634 | MS.gene66443:CDS |
| TGATTTGGAAATGGTCCAAC+AGG | 0.410429 | 1.4:+4742298 | None:intergenic |
| ACATTAGTAGAGCTACCTTT+TGG | 0.412296 | 1.4:-4739322 | MS.gene66443:intron |
| CCTAATATGCACAGTTCGCC+TGG | 0.414066 | 1.4:-4741833 | MS.gene66443:CDS |
| CCAAGAAGGAGCTGCTGATT+GGG | 0.414207 | 1.4:-4738344 | MS.gene66443:CDS |
| CTCTGGTTCCCTCCAGATAC+AGG | 0.426137 | 1.4:+4741944 | None:intergenic |
| GAGGGAACCAGAGTTCTATT+AGG | 0.427729 | 1.4:-4741934 | MS.gene66443:CDS |
| TGGGACAAGCTTGAAGATAA+AGG | 0.428074 | 1.4:-4738313 | MS.gene66443:intron |
| CTGCTGATTGGGATGAGGAT+TGG | 0.428599 | 1.4:-4738333 | MS.gene66443:CDS |
| TTCTGAGGTCCTTCGTCAGA+TGG | 0.429930 | 1.4:+4741095 | None:intergenic |
| AACCAGTCTCTAGGCCTTTG+CGG | 0.430545 | 1.4:+4734495 | None:intergenic |
| CTTGGTGGCCGACCTGCAGT+AGG | 0.432092 | 1.4:+4741134 | None:intergenic |
| TCCAAGAAGGAGCTGCTGAT+TGG | 0.435562 | 1.4:-4738345 | MS.gene66443:CDS |
| TGTTATTGGACCTGTATGTC+AGG | 0.437076 | 1.4:+4739683 | None:intergenic |
| ACTCGGATCTCTTTGGCTCT+GGG | 0.438429 | 1.4:-4734326 | MS.gene66443:CDS |
| GATGGACATGTTTCTTAGTT+GGG | 0.441697 | 1.4:-4741674 | MS.gene66443:CDS |
| TTCCCCAAGTTAAAGGACTA+AGG | 0.443179 | 1.4:+4741314 | None:intergenic |
| GAAGATAAATATAAGCAAGT+TGG | 0.450494 | 1.4:-4739746 | MS.gene66443:CDS |
| TAATGTATCTTTACCTGCTC+GGG | 0.450789 | 1.4:-4734424 | MS.gene66443:CDS |
| ATCCTCGTGGAGAAGAATCT+TGG | 0.453009 | 1.4:+4741984 | None:intergenic |
| TGTGATTGTGTAGGCCATGT+GGG | 0.453274 | 1.4:+4742094 | None:intergenic |
| CTTGCATACCTCTTTGCTAC+TGG | 0.456702 | 1.4:+4735807 | None:intergenic |
| CTCCTTAGTCCTTTAACTTG+GGG | 0.457594 | 1.4:-4741316 | MS.gene66443:CDS |
| TGGGAAAATCACAAGGGAAC+AGG | 0.457949 | 1.4:-4741698 | MS.gene66443:CDS |
| TTCTTTAGTTCTGGAGACCT+GGG | 0.461210 | 1.4:-4734633 | MS.gene66443:CDS |
| CAACATCAGCAAGTGATGAC+TGG | 0.461510 | 1.4:-4741179 | MS.gene66443:CDS |
| AAGAATGTTATTTGGAAGTA+CGG | 0.461568 | 1.4:+4741372 | None:intergenic |
| CCAACAGGTGCGGATGGCGG+GGG | 0.462189 | 1.4:+4742313 | None:intergenic |
| AGCAAGTGATGACTGGATCT+GGG | 0.467888 | 1.4:-4741172 | MS.gene66443:CDS |
| GAGCTGAAAAGTGGGGTGCT+TGG | 0.470554 | 1.4:+4734528 | None:intergenic |
| GTCAGGGAATGTGGCTTCCT+CGG | 0.471464 | 1.4:+4739700 | None:intergenic |
| ATGTTATTTGGAAGTACGGC+TGG | 0.471488 | 1.4:+4741376 | None:intergenic |
| TTAACTTGGGGAAATCAGTC+AGG | 0.472403 | 1.4:-4741304 | MS.gene66443:intron |
| CGTGGAGAAGAATCTTGGTT+GGG | 0.472806 | 1.4:+4741989 | None:intergenic |
| GGTGGTTGTGCTTCCCGAGC+AGG | 0.473964 | 1.4:+4734411 | None:intergenic |
| GGAGGGACAGCAGCCGTCCT+TGG | 0.475788 | 1.4:+4741116 | None:intergenic |
| TCCAACAGGTGCGGATGGCG+GGG | 0.476045 | 1.4:+4742312 | None:intergenic |
| GAGAGAGAGCTGGATGGAGC+TGG | 0.476810 | 1.4:-4734666 | MS.gene66443:CDS |
| GAGAGTCAAACTCCTAGAAA+AGG | 0.478375 | 1.4:-4734285 | MS.gene66443:CDS |
| AGCCACATTCCCTGACATAC+AGG | 0.483110 | 1.4:-4739693 | MS.gene66443:intron |
| ATGAGATGCTTCTCCATGAC+TGG | 0.483738 | 1.4:+4741050 | None:intergenic |
| GGTCCAACAGGTGCGGATGG+CGG | 0.486394 | 1.4:+4742310 | None:intergenic |
| GGGACAGCAGCCGTCCTTGG+TGG | 0.487192 | 1.4:+4741119 | None:intergenic |
| AGCAACAGAAGCCGATAAGA+AGG | 0.488269 | 1.4:-4740976 | MS.gene66443:intron |
| AGATTGCAGGATTCTGCGTC+AGG | 0.488541 | 1.4:-4741800 | MS.gene66443:intron |
| GGGAAATTGATCTGAGGAGC+AGG | 0.488902 | 1.4:+4742349 | None:intergenic |
| AACTGCTTGAGCTGAAAAGT+GGG | 0.491275 | 1.4:+4734520 | None:intergenic |
| CTGCTTGCAAATGGACGGTT+AGG | 0.491492 | 1.4:+4736884 | None:intergenic |
| TACTATCGGAAGTCCACATA+GGG | 0.492381 | 1.4:-4736861 | MS.gene66443:CDS |
| CCCCGCAAAGGCCTAGAGAC+TGG | 0.496157 | 1.4:-4734497 | MS.gene66443:CDS |
| CCAGCCATGTTGCCATAAGC+AGG | 0.496487 | 1.4:+4742223 | None:intergenic |
| CCCTCCAGATACAGGAAGAA+TGG | 0.497277 | 1.4:+4741952 | None:intergenic |
| TCAAGAGTGTATTCTTTGAC+AGG | 0.499945 | 1.4:+4737106 | None:intergenic |
| CCGATAGTACTGCTTGCAAA+TGG | 0.504423 | 1.4:+4736875 | None:intergenic |
| CATGCTATCATTATCTTGAT+CGG | 0.505568 | 1.4:+4741465 | None:intergenic |
| GAACTGCTTGAGCTGAAAAG+TGG | 0.506973 | 1.4:+4734519 | None:intergenic |
| AAGTAGACAAGGATAGAGAT+GGG | 0.507931 | 1.4:-4741717 | MS.gene66443:intron |
| ACGACCGTCGCAATCCAAAT+CGG | 0.511349 | 1.4:+4742739 | None:intergenic |
| TTCCTCTAACGTGTGGTCGT+TGG | 0.511906 | 1.4:+4742188 | None:intergenic |
| GATTTCTGCTGCTTGTTCTG+AGG | 0.514331 | 1.4:+4741080 | None:intergenic |
| ATAATGTATCTTTACCTGCT+CGG | 0.515163 | 1.4:-4734425 | MS.gene66443:CDS |
| TGCACCTAATGGAGCGACAC+AGG | 0.516922 | 1.4:-4741414 | MS.gene66443:CDS |
| CAATATCCTACCTCTGTCAA+TGG | 0.520393 | 1.4:-4742073 | MS.gene66443:CDS |
| AGTTAAAGGACTAAGGAGAT+TGG | 0.520793 | 1.4:+4741321 | None:intergenic |
| GGGCGAAGTCCAGCAACAGC+AGG | 0.521376 | 1.4:+4742265 | None:intergenic |
| GCAGCTCCTTCTTGGATACC+AGG | 0.522331 | 1.4:+4738352 | None:intergenic |
| CTTCTTGATTTACTGACTAG+TGG | 0.522839 | 1.4:-4741352 | MS.gene66443:CDS |
| TAGTCCTACTGCTTCAACTC+AGG | 0.522846 | 1.4:-4742164 | MS.gene66443:CDS |
| ATAGTCTACAGTGCATTGTA+TGG | 0.523125 | 1.4:-4742391 | MS.gene66443:CDS |
| GAAGCCGTCTCCTTCTTCCA+AGG | 0.523721 | 1.4:-4742704 | MS.gene66443:CDS |
| GAGATTTCACCAGTTCATCA+AGG | 0.530082 | 1.4:+4739389 | None:intergenic |
| GAAATCCAAAATTCCAGTCA+TGG | 0.530741 | 1.4:-4741063 | MS.gene66443:CDS |
| GAAGTAGACAAGGATAGAGA+TGG | 0.531578 | 1.4:-4741718 | MS.gene66443:intron |
| AAAGGACTAAGGAGATTGGC+AGG | 0.533429 | 1.4:+4741325 | None:intergenic |
| GTGCATATTAGGTGCCTGAA+TGG | 0.533486 | 1.4:+4741844 | None:intergenic |
| GTGTTCTCCAACCAGTCTCT+AGG | 0.536289 | 1.4:+4734486 | None:intergenic |
| CTTGCCTGCTTATGGCAACA+TGG | 0.540907 | 1.4:-4742227 | MS.gene66443:CDS |
| TGCAATCTGACTGAAAGTCC+AGG | 0.547653 | 1.4:+4741815 | None:intergenic |
| GTGATTGTGTAGGCCATGTG+GGG | 0.548388 | 1.4:+4742095 | None:intergenic |
| GTGCCTGAATGGAGGCATGC+TGG | 0.550485 | 1.4:+4741855 | None:intergenic |
| GTTGGGGCAAACCGGAACCT+TGG | 0.552590 | 1.4:+4742687 | None:intergenic |
| CTGCAAAGAATCAGAGGTGG+TGG | 0.554201 | 1.4:+4741910 | None:intergenic |
| GCCATTCTTCCTGTATCTGG+AGG | 0.554937 | 1.4:-4741953 | MS.gene66443:CDS |
| TGAGGTCCTTCGTCAGATGG+AGG | 0.555421 | 1.4:+4741098 | None:intergenic |
| TGATTGTGTAGGCCATGTGG+GGG | 0.556489 | 1.4:+4742096 | None:intergenic |
| CATGTTGCCATAAGCAGGCA+AGG | 0.556940 | 1.4:+4742228 | None:intergenic |
| AATCACAAGGGAACAGGCGA+TGG | 0.560183 | 1.4:-4741692 | MS.gene66443:CDS |
| TTGGTTGGGCTGAGATGAGG+TGG | 0.560528 | 1.4:+4742003 | None:intergenic |
| AATGGTCCAACAGGTGCGGA+TGG | 0.560586 | 1.4:+4742307 | None:intergenic |
| TGGTGGTCCTAATAGAACTC+TGG | 0.561930 | 1.4:+4741927 | None:intergenic |
| GATGATATCGATTCAGTTTG+GGG | 0.565888 | 1.4:-4735838 | MS.gene66443:CDS |
| GATATCATCATTTGTGTCGA+AGG | 0.566001 | 1.4:+4735852 | None:intergenic |
| GCAAAGGCCTAGAGACTGGT+TGG | 0.566136 | 1.4:-4734493 | MS.gene66443:CDS |
| TATGGCAACATGGCTGGAGG+AGG | 0.567647 | 1.4:-4742217 | MS.gene66443:CDS |
| AGGTAGCTCTACTAATGTCG+TGG | 0.568076 | 1.4:+4739327 | None:intergenic |
| TTGGTGGCCGACCTGCAGTA+GGG | 0.569666 | 1.4:+4741135 | None:intergenic |
| ATCATCAAAACTGAAACCAC+TGG | 0.572900 | 1.4:+4734557 | None:intergenic |
| CGACATGTCAACCCTACTGC+AGG | 0.573256 | 1.4:-4741146 | MS.gene66443:CDS |
| TGCAGGTCGGCCACCAAGGA+CGG | 0.573659 | 1.4:-4741129 | MS.gene66443:CDS |
| TATCATTATCTTGATCGGAT+AGG | 0.573737 | 1.4:+4741470 | None:intergenic |
| CCATTTGCAAGCAGTACTAT+CGG | 0.574980 | 1.4:-4736875 | MS.gene66443:CDS |
| GCCATAAGCAGGCAAGGCGG+AGG | 0.576502 | 1.4:+4742234 | None:intergenic |
| AGGAGCTGCTGATTGGGATG+AGG | 0.578287 | 1.4:-4738338 | MS.gene66443:CDS |
| ACAATACCATTGACAGAGGT+AGG | 0.578660 | 1.4:+4742067 | None:intergenic |
| CAAACCGGAACCTTGGAAGA+AGG | 0.579844 | 1.4:+4742694 | None:intergenic |
| CCATTCTTCCTGTATCTGGA+GGG | 0.582597 | 1.4:-4741952 | MS.gene66443:CDS |
| TCTTGCATATGCAGTGATCA+TGG | 0.583093 | 1.4:-4735931 | MS.gene66443:intron |
| CTACTGCAGGTCGGCCACCA+AGG | 0.583234 | 1.4:-4741133 | MS.gene66443:CDS |
| AATCCTTTAGGCTGGCAACC+TGG | 0.583706 | 1.4:-4738370 | MS.gene66443:intron |
| GCTCAAGCAGTTCCCCGCAA+AGG | 0.583752 | 1.4:-4734509 | MS.gene66443:CDS |
| GATCTCTTCCTGAAGACCAG+TGG | 0.584662 | 1.4:-4734573 | MS.gene66443:CDS |
| GAATGAACAAAGCCCCTATG+TGG | 0.584763 | 1.4:+4736848 | None:intergenic |
| TTACAGGAGAGAGAGCTGGA+TGG | 0.585980 | 1.4:-4734672 | MS.gene66443:intron |
| GGTAGCTCTACTAATGTCGT+GGG | 0.588321 | 1.4:+4739328 | None:intergenic |
| TCGTGGAGAAGAATCTTGGT+TGG | 0.589465 | 1.4:+4741988 | None:intergenic |
| GACCTGTATGTCAGGGAATG+TGG | 0.595549 | 1.4:+4739691 | None:intergenic |
| AAAACATCTTCACCACAGGC+TGG | 0.596872 | 1.4:-4734597 | MS.gene66443:CDS |
| CATTAAAACATCTTCACCAC+AGG | 0.599364 | 1.4:-4734601 | MS.gene66443:CDS |
| TTGTGATTGTGTAGGCCATG+TGG | 0.600604 | 1.4:+4742093 | None:intergenic |
| CAATGCACCTAAACTTGTCA+CGG | 0.600819 | 1.4:-4742446 | MS.gene66443:CDS |
| GAGGTCCTTCGTCAGATGGA+GGG | 0.603769 | 1.4:+4741099 | None:intergenic |
| CTAACGTGTGGTCGTTGGAG+AGG | 0.605972 | 1.4:+4742193 | None:intergenic |
| CGTGCCGATTTGGATTGCGA+CGG | 0.608028 | 1.4:-4742743 | MS.gene66443:CDS |
| TGGCAACCTGGTATCCAAGA+AGG | 0.611414 | 1.4:-4738358 | MS.gene66443:CDS |
| GCACCTAATGGAGCGACACA+GGG | 0.613982 | 1.4:-4741413 | MS.gene66443:CDS |
| GTAGGATATTGTGATTGTGT+AGG | 0.618275 | 1.4:+4742085 | None:intergenic |
| GTACTATCGGAAGTCCACAT+AGG | 0.618358 | 1.4:-4736862 | MS.gene66443:CDS |
| GTTATTGGACCTGTATGTCA+GGG | 0.619557 | 1.4:+4739684 | None:intergenic |
| TCCTACTGCTTCAACTCAGG+AGG | 0.619831 | 1.4:-4742161 | MS.gene66443:CDS |
| TAGAATTGATTTGATCAGCA+CGG | 0.625354 | 1.4:+4739413 | None:intergenic |
| GATTGCGACGGTCGTATCAG+CGG | 0.625790 | 1.4:-4742731 | MS.gene66443:CDS |
| ACTACAAATGAACAAGGAGT+AGG | 0.626367 | 1.4:-4736956 | MS.gene66443:CDS |
| TAGTACTGCTTGCAAATGGA+CGG | 0.626855 | 1.4:+4736879 | None:intergenic |
| TGAGCTCTGCAAAGAATCAG+AGG | 0.631063 | 1.4:+4741904 | None:intergenic |
| CGCAATCCAAATCGGCACGA+CGG | 0.634413 | 1.4:+4742747 | None:intergenic |
| TGGAAATGGTCCAACAGGTG+CGG | 0.635643 | 1.4:+4742303 | None:intergenic |
| GCAAGTGATGACTGGATCTG+GGG | 0.637744 | 1.4:-4741171 | MS.gene66443:CDS |
| ATAGAGATGGGAAAATCACA+AGG | 0.644134 | 1.4:-4741705 | MS.gene66443:CDS |
| GCTTATGGCAACATGGCTGG+AGG | 0.644176 | 1.4:-4742220 | MS.gene66443:CDS |
| GCAAGGCGGAGGAAGTTGCA+GGG | 0.644535 | 1.4:+4742245 | None:intergenic |
| TGGGTGTCATCTTGATTACG+GGG | 0.644709 | 1.4:+4736791 | None:intergenic |
| CTAATGGAGCGACACAGGGA+GGG | 0.649839 | 1.4:-4741409 | MS.gene66443:CDS |
| TCCAAAACAAAAGCAACCAA+AGG | 0.650907 | 1.4:-4737062 | MS.gene66443:CDS |
| GCTGTCCCTCCATCTGACGA+AGG | 0.652200 | 1.4:-4741104 | MS.gene66443:CDS |
| CTTAGTTGGGCATTACCAAG+AGG | 0.652440 | 1.4:-4741661 | MS.gene66443:intron |
| ATCTTGGTTGGGCTGAGATG+AGG | 0.653612 | 1.4:+4742000 | None:intergenic |
| TGTAGACTATTTCAGGAGTG+AGG | 0.661834 | 1.4:+4742404 | None:intergenic |
| TCTCAGACTACAAATGAACA+AGG | 0.664499 | 1.4:-4736962 | MS.gene66443:CDS |
| TCCTCCTGAGTTGAAGCAGT+AGG | 0.666830 | 1.4:+4742160 | None:intergenic |
| ATTCAATGCCAGTAGCAAAG+AGG | 0.669713 | 1.4:-4735815 | MS.gene66443:intron |
| AATGAACAAGGAGTAGGCAA+CGG | 0.671842 | 1.4:-4736950 | MS.gene66443:CDS |
| GGAACCTTGGAAGAAGGAGA+CGG | 0.672275 | 1.4:+4742700 | None:intergenic |
| GATCAAAATTCGCACTACTG+CGG | 0.674396 | 1.4:+4734370 | None:intergenic |
| GATTGTGTAGGCCATGTGGG+GGG | 0.676472 | 1.4:+4742097 | None:intergenic |
| GTGGCAGGGAAATTGATCTG+AGG | 0.681520 | 1.4:+4742343 | None:intergenic |
| AGGAAGAGATCACCAGCCTG+TGG | 0.681624 | 1.4:+4734585 | None:intergenic |
| GGACTAGTTCCTCTAACGTG+TGG | 0.682564 | 1.4:+4742181 | None:intergenic |
| CATATTAGGTGCCTGAATGG+AGG | 0.684163 | 1.4:+4741847 | None:intergenic |
| CCTAATGGAGCGACACAGGG+AGG | 0.684554 | 1.4:-4741410 | MS.gene66443:CDS |
| ATGACACCCAAGAAACCCAA+AGG | 0.686402 | 1.4:-4736778 | MS.gene66443:intron |
| ATCATCCAAGTTGATAACCG+AGG | 0.694322 | 1.4:-4739717 | MS.gene66443:CDS |
| ACAGAATCAAAACTTACTGG+TGG | 0.696501 | 1.4:+4734393 | None:intergenic |
| AGCAACAATACCATTGACAG+AGG | 0.702416 | 1.4:+4742063 | None:intergenic |
| ATGTCAACCCTACTGCAGGT+CGG | 0.704032 | 1.4:-4741142 | MS.gene66443:CDS |
| ATGGCAGATGAAAATCCTCG+TGG | 0.714682 | 1.4:+4741971 | None:intergenic |
| TAGAGATGGGAAAATCACAA+GGG | 0.716741 | 1.4:-4741704 | MS.gene66443:CDS |
| AACCAAGATTCTTCTCCACG+AGG | 0.717979 | 1.4:-4741986 | MS.gene66443:CDS |
| CCAGTCTCTAGGCCTTTGCG+GGG | 0.721359 | 1.4:+4734497 | None:intergenic |
| ACTGCTTGAGCTGAAAAGTG+GGG | 0.724007 | 1.4:+4734521 | None:intergenic |
| GCTCTGCAAAGAATCAGAGG+TGG | 0.735278 | 1.4:+4741907 | None:intergenic |
| ACTATCGGAAGTCCACATAG+GGG | 0.740160 | 1.4:-4736860 | MS.gene66443:CDS |
| GTTGCCATAAGCAGGCAAGG+CGG | 0.769229 | 1.4:+4742231 | None:intergenic |
| TGCATATGCAGTGATCATGG+TGG | 0.802888 | 1.4:-4735928 | MS.gene66443:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4734260 | 4742779 | 4734260 | ID=MS.gene66443 |
| chr1.4 | mRNA | 4734260 | 4742779 | 4734260 | ID=MS.gene66443.t1;Parent=MS.gene66443 |
| chr1.4 | exon | 4742699 | 4742779 | 4742699 | ID=MS.gene66443.t1.exon1;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4742699 | 4742779 | 4742699 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4741801 | 4742524 | 4741801 | ID=MS.gene66443.t1.exon2;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4741801 | 4742524 | 4741801 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4741662 | 4741733 | 4741662 | ID=MS.gene66443.t1.exon3;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4741662 | 4741733 | 4741662 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4741305 | 4741514 | 4741305 | ID=MS.gene66443.t1.exon4;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4741305 | 4741514 | 4741305 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4740977 | 4741206 | 4740977 | ID=MS.gene66443.t1.exon5;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4740977 | 4741206 | 4740977 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4739694 | 4739792 | 4739694 | ID=MS.gene66443.t1.exon6;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4739694 | 4739792 | 4739694 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4739323 | 4739437 | 4739323 | ID=MS.gene66443.t1.exon7;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4739323 | 4739437 | 4739323 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4738314 | 4738382 | 4738314 | ID=MS.gene66443.t1.exon8;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4738314 | 4738382 | 4738314 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4736779 | 4737136 | 4736779 | ID=MS.gene66443.t1.exon9;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4736779 | 4737136 | 4736779 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4735816 | 4735939 | 4735816 | ID=MS.gene66443.t1.exon10;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4735816 | 4735939 | 4735816 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| chr1.4 | exon | 4734260 | 4734688 | 4734260 | ID=MS.gene66443.t1.exon11;Parent=MS.gene66443.t1 |
| chr1.4 | CDS | 4734260 | 4734688 | 4734260 | ID=cds.MS.gene66443.t1;Parent=MS.gene66443.t1 |
| Gene Sequence |
| Protein sequence |
