Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66586.t1 | XP_013452513.1 | 96.2 | 211 | 8 | 0 | 1 | 211 | 108 | 318 | 3.60E-113 | 417.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66586.t1 | Q0ZPV7 | 56.0 | 209 | 92 | 0 | 1 | 209 | 111 | 319 | 2.1e-61 | 236.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66586.t1 | B7FI17 | 96.2 | 211 | 8 | 0 | 1 | 211 | 108 | 318 | 2.6e-113 | 417.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87835 | MS.gene66586 | PPI |
| MS.gene66586 | MS.gene019398 | PPI |
| MS.gene23638 | MS.gene66586 | PPI |
| MS.gene66586 | MS.gene37505 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66586.t1 | MTR_6g464280 | 96.209 | 211 | 8 | 0 | 1 | 211 | 108 | 318 | 3.31e-150 | 420 |
| MS.gene66586.t1 | MTR_6g464320 | 85.782 | 211 | 30 | 0 | 1 | 211 | 109 | 319 | 1.83e-132 | 375 |
| MS.gene66586.t1 | MTR_6g464510 | 72.512 | 211 | 57 | 1 | 1 | 211 | 111 | 320 | 4.78e-110 | 318 |
| MS.gene66586.t1 | MTR_1g102160 | 54.460 | 213 | 92 | 2 | 1 | 209 | 106 | 317 | 7.40e-76 | 231 |
| MS.gene66586.t1 | MTR_0007s0520 | 54.327 | 208 | 91 | 3 | 1 | 205 | 106 | 312 | 6.09e-72 | 221 |
| MS.gene66586.t1 | MTR_8g035520 | 52.752 | 218 | 90 | 4 | 1 | 211 | 107 | 318 | 6.24e-71 | 219 |
| MS.gene66586.t1 | MTR_1g102170 | 55.051 | 198 | 88 | 1 | 1 | 198 | 123 | 319 | 3.78e-70 | 217 |
| MS.gene66586.t1 | MTR_8g035540 | 51.835 | 218 | 92 | 4 | 1 | 211 | 99 | 310 | 2.78e-68 | 212 |
| MS.gene66586.t1 | MTR_6g464120 | 53.846 | 208 | 93 | 3 | 1 | 207 | 110 | 315 | 2.15e-66 | 213 |
| MS.gene66586.t1 | MTR_0007s0480 | 54.430 | 158 | 68 | 3 | 51 | 205 | 2 | 158 | 1.21e-51 | 164 |
| MS.gene66586.t1 | MTR_8g035500 | 38.889 | 216 | 121 | 3 | 1 | 211 | 102 | 311 | 4.80e-48 | 160 |
| MS.gene66586.t1 | MTR_6g065430 | 41.848 | 184 | 98 | 4 | 4 | 186 | 120 | 295 | 5.73e-40 | 139 |
| MS.gene66586.t1 | MTR_7g406880 | 41.117 | 197 | 95 | 8 | 6 | 186 | 122 | 313 | 1.21e-34 | 126 |
| MS.gene66586.t1 | MTR_6g065120 | 39.106 | 179 | 102 | 3 | 5 | 183 | 129 | 300 | 1.90e-33 | 122 |
| MS.gene66586.t1 | MTR_1g111280 | 38.679 | 212 | 113 | 4 | 5 | 205 | 120 | 325 | 4.13e-33 | 122 |
| MS.gene66586.t1 | MTR_6g065270 | 39.106 | 179 | 102 | 4 | 5 | 183 | 129 | 300 | 6.22e-33 | 121 |
| MS.gene66586.t1 | MTR_6g065400 | 39.106 | 179 | 102 | 3 | 5 | 183 | 127 | 298 | 1.65e-32 | 120 |
| MS.gene66586.t1 | MTR_6g065110 | 37.989 | 179 | 104 | 3 | 5 | 183 | 128 | 299 | 2.00e-31 | 117 |
| MS.gene66586.t1 | MTR_7g107040 | 38.049 | 205 | 112 | 6 | 1 | 199 | 97 | 292 | 2.31e-31 | 117 |
| MS.gene66586.t1 | MTR_6g065370 | 37.430 | 179 | 105 | 3 | 5 | 183 | 127 | 298 | 2.70e-30 | 114 |
| MS.gene66586.t1 | MTR_4g050140 | 35.556 | 225 | 127 | 7 | 1 | 211 | 96 | 316 | 3.73e-28 | 108 |
| MS.gene66586.t1 | MTR_6g065340 | 34.973 | 183 | 96 | 4 | 1 | 183 | 134 | 293 | 8.24e-26 | 102 |
| MS.gene66586.t1 | MTR_4g086510 | 33.333 | 213 | 120 | 7 | 1 | 204 | 103 | 302 | 6.24e-25 | 99.8 |
| MS.gene66586.t1 | MTR_7g056207 | 33.178 | 214 | 125 | 7 | 1 | 207 | 135 | 337 | 1.49e-23 | 96.7 |
| MS.gene66586.t1 | MTR_1g089310 | 36.702 | 188 | 105 | 6 | 1 | 186 | 133 | 308 | 1.02e-22 | 94.4 |
| MS.gene66586.t1 | MTR_1g089310 | 36.702 | 188 | 105 | 6 | 1 | 186 | 149 | 324 | 1.29e-22 | 94.0 |
| MS.gene66586.t1 | MTR_4g086480 | 34.975 | 203 | 109 | 8 | 11 | 204 | 115 | 303 | 4.94e-22 | 92.0 |
| MS.gene66586.t1 | MTR_1g012430 | 32.961 | 179 | 113 | 4 | 6 | 183 | 98 | 270 | 8.89e-22 | 91.3 |
| MS.gene66586.t1 | MTR_7g093950 | 33.854 | 192 | 110 | 5 | 1 | 186 | 134 | 314 | 3.48e-21 | 90.1 |
| MS.gene66586.t1 | MTR_3g012440 | 34.752 | 141 | 85 | 2 | 1 | 136 | 116 | 254 | 6.81e-20 | 86.3 |
| MS.gene66586.t1 | MTR_1g082210 | 36.232 | 138 | 80 | 3 | 1 | 137 | 133 | 263 | 2.32e-19 | 85.1 |
| MS.gene66586.t1 | MTR_4g086470 | 34.270 | 178 | 100 | 6 | 11 | 183 | 114 | 279 | 1.44e-18 | 82.4 |
| MS.gene66586.t1 | MTR_6g022710 | 29.592 | 196 | 98 | 5 | 1 | 156 | 188 | 383 | 3.02e-18 | 82.4 |
| MS.gene66586.t1 | MTR_3g101420 | 32.895 | 228 | 105 | 9 | 8 | 211 | 105 | 308 | 2.73e-17 | 79.0 |
| MS.gene66586.t1 | MTR_4g086540 | 30.244 | 205 | 111 | 6 | 8 | 208 | 117 | 293 | 3.21e-17 | 78.6 |
| MS.gene66586.t1 | MTR_1g105020 | 41.441 | 111 | 57 | 2 | 1 | 103 | 101 | 211 | 1.41e-16 | 77.0 |
| MS.gene66586.t1 | MTR_3g450680 | 31.308 | 214 | 115 | 8 | 1 | 202 | 109 | 302 | 4.07e-16 | 75.9 |
| MS.gene66586.t1 | MTR_1g104930 | 37.500 | 96 | 52 | 2 | 6 | 94 | 106 | 200 | 5.81e-15 | 72.4 |
| MS.gene66586.t1 | MTR_5g005850 | 29.279 | 222 | 127 | 9 | 8 | 211 | 113 | 322 | 1.34e-14 | 71.6 |
| MS.gene66586.t1 | MTR_7g051020 | 38.144 | 97 | 48 | 3 | 7 | 94 | 110 | 203 | 1.46e-14 | 71.2 |
| MS.gene66586.t1 | MTR_1g104933 | 37.755 | 98 | 49 | 3 | 6 | 94 | 104 | 198 | 4.53e-14 | 70.1 |
| MS.gene66586.t1 | MTR_8g040860 | 27.907 | 215 | 118 | 9 | 1 | 202 | 109 | 299 | 1.05e-13 | 68.9 |
| MS.gene66586.t1 | MTR_5g005920 | 28.505 | 214 | 120 | 12 | 1 | 202 | 109 | 301 | 1.99e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66586.t1 | AT5G62180 | 54.067 | 209 | 95 | 1 | 1 | 209 | 108 | 315 | 3.39e-76 | 232 |
| MS.gene66586.t1 | AT2G45600 | 46.188 | 223 | 101 | 4 | 1 | 211 | 94 | 309 | 1.31e-60 | 192 |
| MS.gene66586.t1 | AT2G45610 | 43.868 | 212 | 107 | 3 | 1 | 206 | 107 | 312 | 2.53e-54 | 176 |
| MS.gene66586.t1 | AT5G16080 | 37.436 | 195 | 104 | 5 | 1 | 186 | 120 | 305 | 3.51e-31 | 117 |
| MS.gene66586.t1 | AT5G23530 | 35.644 | 202 | 122 | 4 | 1 | 201 | 115 | 309 | 4.91e-31 | 116 |
| MS.gene66586.t1 | AT1G68620 | 38.172 | 186 | 102 | 6 | 6 | 184 | 122 | 301 | 2.57e-27 | 106 |
| MS.gene66586.t1 | AT5G06570 | 35.185 | 216 | 121 | 7 | 1 | 205 | 104 | 311 | 2.04e-26 | 103 |
| MS.gene66586.t1 | AT5G06570 | 35.185 | 216 | 121 | 7 | 1 | 205 | 104 | 311 | 2.04e-26 | 103 |
| MS.gene66586.t1 | AT5G06570 | 35.185 | 216 | 121 | 7 | 1 | 205 | 119 | 326 | 2.54e-26 | 103 |
| MS.gene66586.t1 | AT5G06570 | 35.185 | 216 | 121 | 7 | 1 | 205 | 119 | 326 | 2.54e-26 | 103 |
| MS.gene66586.t1 | AT1G19190 | 33.333 | 192 | 99 | 4 | 3 | 183 | 102 | 275 | 5.92e-22 | 91.7 |
| MS.gene66586.t1 | AT3G63010 | 36.111 | 180 | 103 | 4 | 8 | 186 | 141 | 309 | 1.91e-21 | 90.9 |
| MS.gene66586.t1 | AT1G47480 | 30.918 | 207 | 126 | 5 | 1 | 203 | 100 | 293 | 4.26e-21 | 89.4 |
| MS.gene66586.t1 | AT5G27320 | 42.188 | 128 | 66 | 3 | 7 | 133 | 138 | 258 | 1.34e-20 | 88.6 |
| MS.gene66586.t1 | AT1G49640 | 44.086 | 93 | 49 | 2 | 4 | 96 | 105 | 194 | 2.70e-20 | 87.0 |
| MS.gene66586.t1 | AT5G14310 | 30.675 | 163 | 76 | 1 | 1 | 126 | 179 | 341 | 2.10e-18 | 83.2 |
| MS.gene66586.t1 | AT3G05120 | 38.806 | 134 | 74 | 3 | 5 | 137 | 138 | 264 | 1.51e-17 | 80.1 |
| MS.gene66586.t1 | AT3G48700 | 42.268 | 97 | 48 | 2 | 6 | 94 | 107 | 203 | 2.86e-17 | 79.0 |
| MS.gene66586.t1 | AT3G27320 | 27.228 | 202 | 99 | 6 | 1 | 156 | 162 | 361 | 7.51e-17 | 78.6 |
| MS.gene66586.t1 | AT3G27320 | 27.228 | 202 | 99 | 6 | 1 | 156 | 194 | 393 | 7.87e-17 | 78.6 |
| MS.gene66586.t1 | AT3G48690 | 40.000 | 95 | 50 | 2 | 7 | 94 | 105 | 199 | 5.85e-15 | 72.4 |
| MS.gene66586.t1 | AT1G49650 | 35.714 | 98 | 55 | 3 | 4 | 96 | 159 | 253 | 7.09e-13 | 67.0 |
| MS.gene66586.t1 | AT1G49660 | 37.000 | 100 | 56 | 3 | 4 | 98 | 103 | 200 | 1.04e-12 | 66.2 |
Find 51 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATGAAATTCTTTGCTT+TGG | 0.269748 | 6.4:+39771566 | None:intergenic |
| ATCATGAGTATTCCAATCTA+AGG | 0.274329 | 6.4:-39771782 | MS.gene66586:CDS |
| CTTGAGCCGTTGAAAATTCT+AGG | 0.274915 | 6.4:-39771942 | MS.gene66586:CDS |
| TAAGGAGTTGGTTAAATTGT+TGG | 0.354633 | 6.4:-39771661 | MS.gene66586:CDS |
| TCCATTGGTTGATCGTAATA+AGG | 0.354913 | 6.4:-39771679 | MS.gene66586:CDS |
| TGGAAGCATTGAGTTTGATT+AGG | 0.366794 | 6.4:-39772088 | MS.gene66586:CDS |
| ACCATTCCCAACCCTTAGAT+TGG | 0.372685 | 6.4:+39771770 | None:intergenic |
| ATGAAATTCTTTGCTTTGGA+TGG | 0.390861 | 6.4:+39771570 | None:intergenic |
| GGTTAAATTGTTGGAGGAGA+AGG | 0.419389 | 6.4:-39771652 | MS.gene66586:CDS |
| TGATCACGTTTAACACCAAT+TGG | 0.432249 | 6.4:+39771801 | None:intergenic |
| GCCGCCGGTAGCCGGTGCTC+CGG | 0.443546 | 6.4:+39772125 | None:intergenic |
| TAACTCTGACTCAGTCCTAT+TGG | 0.451589 | 6.4:+39771887 | None:intergenic |
| CATCATATGCCGCCGGTAGC+CGG | 0.451594 | 6.4:+39772117 | None:intergenic |
| AGGGTGTTGGTGAGTATGAA+TGG | 0.462381 | 6.4:-39771708 | MS.gene66586:CDS |
| GAAGGGTGTGGAAGTGGTGA+AGG | 0.466496 | 6.4:-39771634 | MS.gene66586:CDS |
| AGTATTCCAATCTAAGGGTT+GGG | 0.474229 | 6.4:-39771776 | MS.gene66586:CDS |
| GTTAAATTGTTGGAGGAGAA+GGG | 0.476633 | 6.4:-39771651 | MS.gene66586:CDS |
| CGCACCGGAGCACCGGCTAC+CGG | 0.478223 | 6.4:-39772129 | MS.gene66586:CDS |
| GGAGGAGAAGGGTGTGGAAG+TGG | 0.478996 | 6.4:-39771640 | MS.gene66586:CDS |
| TTTCTAATGGGAAATAGTGC+TGG | 0.493645 | 6.4:-39772017 | MS.gene66586:CDS |
| ATCGCCTCGCACCGGAGCAC+CGG | 0.497130 | 6.4:-39772136 | MS.gene66586:CDS |
| GTGTGTTAGTGATTTGATGT+GGG | 0.504249 | 6.4:-39771835 | MS.gene66586:CDS |
| GGTTGATCGTAATAAGGAGT+TGG | 0.507526 | 6.4:-39771673 | MS.gene66586:CDS |
| TGGGAGTTAGCGTTACCAAT+TGG | 0.507682 | 6.4:-39771816 | MS.gene66586:CDS |
| CGTCGAAGCAGTTGTCGCCT+CGG | 0.508826 | 6.4:-39772165 | MS.gene66586:CDS |
| GGAGTTGGTTAAATTGTTGG+AGG | 0.511533 | 6.4:-39771658 | MS.gene66586:CDS |
| ATTGTTGGAGGAGAAGGGTG+TGG | 0.514825 | 6.4:-39771646 | MS.gene66586:CDS |
| CGAGGCGACAACTGCTTCGA+CGG | 0.523045 | 6.4:+39772166 | None:intergenic |
| AGGACTACGTGTAGTTCAAA+AGG | 0.533022 | 6.4:-39771973 | MS.gene66586:CDS |
| TGTGTGTTAGTGATTTGATG+TGG | 0.546036 | 6.4:-39771836 | MS.gene66586:CDS |
| TTGAGCCGTTGAAAATTCTA+GGG | 0.552613 | 6.4:-39771941 | MS.gene66586:CDS |
| GAGTATTCCAATCTAAGGGT+TGG | 0.553194 | 6.4:-39771777 | MS.gene66586:CDS |
| CAAAGCAAAGAATTTCATTG+AGG | 0.554638 | 6.4:-39771565 | None:intergenic |
| GGTCGATTATCGCCTCGCAC+CGG | 0.575927 | 6.4:-39772144 | MS.gene66586:CDS |
| GTAGCCGGTGCTCCGGTGCG+AGG | 0.576122 | 6.4:+39772132 | None:intergenic |
| GCTACAATTGCATATCATGC+AGG | 0.576937 | 6.4:-39771993 | MS.gene66586:CDS |
| GGCGGCATATGATGATGCTA+TGG | 0.579015 | 6.4:-39772108 | MS.gene66586:CDS |
| TTAGGTCAAGTGATGATGAA+TGG | 0.579905 | 6.4:-39772070 | MS.gene66586:CDS |
| TCCAATCTAAGGGTTGGGAA+TGG | 0.580920 | 6.4:-39771771 | MS.gene66586:CDS |
| GGATCATGAGTGGAGGGTGT+TGG | 0.586722 | 6.4:-39771721 | MS.gene66586:CDS |
| TATGAATGGTGGAGATCCAT+TGG | 0.590004 | 6.4:-39771694 | MS.gene66586:CDS |
| ACCGGAGCACCGGCTACCGG+CGG | 0.597839 | 6.4:-39772126 | MS.gene66586:CDS |
| AGATTAAGGATCATGAGTGG+AGG | 0.598392 | 6.4:-39771728 | MS.gene66586:CDS |
| GATTAAGGATCATGAGTGGA+GGG | 0.601559 | 6.4:-39771727 | MS.gene66586:CDS |
| TCATGAGTATTCCAATCTAA+GGG | 0.620597 | 6.4:-39771781 | MS.gene66586:CDS |
| ATCAAATCACTAACACACAA+AGG | 0.629463 | 6.4:+39771840 | None:intergenic |
| TCCTTATTACGATCAACCAA+TGG | 0.629948 | 6.4:+39771678 | None:intergenic |
| CTAAGATTAAGGATCATGAG+TGG | 0.641493 | 6.4:-39771731 | MS.gene66586:CDS |
| ATAGCATCATCATATGCCGC+CGG | 0.642105 | 6.4:+39772110 | None:intergenic |
| GTGTTGGTGAGTATGAATGG+TGG | 0.677117 | 6.4:-39771705 | MS.gene66586:CDS |
| TGCGAGGCGATAATCGACCG+AGG | 0.723884 | 6.4:+39772148 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAAAATGTTTTCTAAT+GGG | - | chr6.4:39771713-39771732 | MS.gene66586:CDS | 15.0% |
| !!! | CTTTTCAAAATGTTTTCTAA+TGG | - | chr6.4:39771712-39771731 | MS.gene66586:CDS | 20.0% |
| !!! | TGAAAAACTTGCTAAGATTA+AGG | - | chr6.4:39772000-39772019 | MS.gene66586:CDS | 25.0% |
| ATCAAATCACTAACACACAA+AGG | + | chr6.4:39771905-39771924 | None:intergenic | 30.0% | |
| ATCATGAGTATTCCAATCTA+AGG | - | chr6.4:39771960-39771979 | MS.gene66586:CDS | 30.0% | |
| CTCAATGAAATTCTTTGCTT+TGG | + | chr6.4:39772179-39772198 | None:intergenic | 30.0% | |
| TCATGAGTATTCCAATCTAA+GGG | - | chr6.4:39771961-39771980 | MS.gene66586:CDS | 30.0% | |
| ! | ATCATCCCTAGAATTTTCAA+CGG | + | chr6.4:39771809-39771828 | None:intergenic | 30.0% |
| ! | ATGAAATTCTTTGCTTTGGA+TGG | + | chr6.4:39772175-39772194 | None:intergenic | 30.0% |
| ! | TAAGGAGTTGGTTAAATTGT+TGG | - | chr6.4:39772081-39772100 | MS.gene66586:CDS | 30.0% |
| ! | TTCAAGAAGATGGTTTTCAT+GGG | - | chr6.4:39772134-39772153 | MS.gene66586:CDS | 30.0% |
| ! | TTTCAAGAAGATGGTTTTCA+TGG | - | chr6.4:39772133-39772152 | MS.gene66586:CDS | 30.0% |
| !!! | ATATTGCGTCAACCATTTTT+TGG | - | chr6.4:39771827-39771846 | MS.gene66586:CDS | 30.0% |
| AGTATTCCAATCTAAGGGTT+GGG | - | chr6.4:39771966-39771985 | MS.gene66586:CDS | 35.0% | |
| CTAACACACAAAGGAAAAAC+AGG | + | chr6.4:39771896-39771915 | None:intergenic | 35.0% | |
| CTAAGATTAAGGATCATGAG+TGG | - | chr6.4:39772011-39772030 | MS.gene66586:CDS | 35.0% | |
| GTGTGTTAGTGATTTGATGT+GGG | - | chr6.4:39771907-39771926 | MS.gene66586:CDS | 35.0% | |
| GTTAAATTGTTGGAGGAGAA+GGG | - | chr6.4:39772091-39772110 | MS.gene66586:CDS | 35.0% | |
| TCCTTATTACGATCAACCAA+TGG | + | chr6.4:39772067-39772086 | None:intergenic | 35.0% | |
| TGATCACGTTTAACACCAAT+TGG | + | chr6.4:39771944-39771963 | None:intergenic | 35.0% | |
| TGTGTGTTAGTGATTTGATG+TGG | - | chr6.4:39771906-39771925 | MS.gene66586:CDS | 35.0% | |
| TTGAGCCGTTGAAAATTCTA+GGG | - | chr6.4:39771801-39771820 | MS.gene66586:CDS | 35.0% | |
| TTTCTAATGGGAAATAGTGC+TGG | - | chr6.4:39771725-39771744 | MS.gene66586:CDS | 35.0% | |
| ! | TCAAGAAGATGGTTTTCATG+GGG | - | chr6.4:39772135-39772154 | MS.gene66586:CDS | 35.0% |
| ! | TCCATTGGTTGATCGTAATA+AGG | - | chr6.4:39772063-39772082 | MS.gene66586:CDS | 35.0% |
| ! | TTAGGTCAAGTGATGATGAA+TGG | - | chr6.4:39771672-39771691 | MS.gene66586:CDS | 35.0% |
| !! | GTGAAGGATTTTCAAGAAGA+TGG | - | chr6.4:39772124-39772143 | MS.gene66586:CDS | 35.0% |
| !! | TGGAAGCATTGAGTTTGATT+AGG | - | chr6.4:39771654-39771673 | MS.gene66586:CDS | 35.0% |
| AGATTAAGGATCATGAGTGG+AGG | - | chr6.4:39772014-39772033 | MS.gene66586:CDS | 40.0% | |
| AGGACTACGTGTAGTTCAAA+AGG | - | chr6.4:39771769-39771788 | MS.gene66586:CDS | 40.0% | |
| CTATTGGTCCCACCAAAAAA+TGG | + | chr6.4:39771842-39771861 | None:intergenic | 40.0% | |
| CTTGAGCCGTTGAAAATTCT+AGG | - | chr6.4:39771800-39771819 | MS.gene66586:CDS | 40.0% | |
| GAGTATTCCAATCTAAGGGT+TGG | - | chr6.4:39771965-39771984 | MS.gene66586:CDS | 40.0% | |
| GATTAAGGATCATGAGTGGA+GGG | - | chr6.4:39772015-39772034 | MS.gene66586:CDS | 40.0% | |
| GCTACAATTGCATATCATGC+AGG | - | chr6.4:39771749-39771768 | MS.gene66586:CDS | 40.0% | |
| GGTTAAATTGTTGGAGGAGA+AGG | - | chr6.4:39772090-39772109 | MS.gene66586:CDS | 40.0% | |
| GGTTGATCGTAATAAGGAGT+TGG | - | chr6.4:39772069-39772088 | MS.gene66586:CDS | 40.0% | |
| TAACTCTGACTCAGTCCTAT+TGG | + | chr6.4:39771858-39771877 | None:intergenic | 40.0% | |
| ! | GGAGTTGGTTAAATTGTTGG+AGG | - | chr6.4:39772084-39772103 | MS.gene66586:CDS | 40.0% |
| ! | TATGAATGGTGGAGATCCAT+TGG | - | chr6.4:39772048-39772067 | MS.gene66586:CDS | 40.0% |
| !!! | CATTTTTTGGTGGGACCAAT+AGG | - | chr6.4:39771840-39771859 | MS.gene66586:CDS | 40.0% |
| !!! | TGCGTCAACCATTTTTTGGT+GGG | - | chr6.4:39771831-39771850 | MS.gene66586:CDS | 40.0% |
| !!! | TTGCGTCAACCATTTTTTGG+TGG | - | chr6.4:39771830-39771849 | MS.gene66586:CDS | 40.0% |
| ACCATTCCCAACCCTTAGAT+TGG | + | chr6.4:39771975-39771994 | None:intergenic | 45.0% | |
| ATAGCATCATCATATGCCGC+CGG | + | chr6.4:39771635-39771654 | None:intergenic | 45.0% | |
| TCCAATCTAAGGGTTGGGAA+TGG | - | chr6.4:39771971-39771990 | MS.gene66586:CDS | 45.0% | |
| TGGGAGTTAGCGTTACCAAT+TGG | - | chr6.4:39771926-39771945 | MS.gene66586:CDS | 45.0% | |
| ! | GTGTTGGTGAGTATGAATGG+TGG | - | chr6.4:39772037-39772056 | MS.gene66586:CDS | 45.0% |
| !! | AGGGTGTTGGTGAGTATGAA+TGG | - | chr6.4:39772034-39772053 | MS.gene66586:CDS | 45.0% |
| ATTGTTGGAGGAGAAGGGTG+TGG | - | chr6.4:39772096-39772115 | MS.gene66586:CDS | 50.0% | |
| ! | GGCGGCATATGATGATGCTA+TGG | - | chr6.4:39771634-39771653 | MS.gene66586:CDS | 50.0% |
| ! | GAAGGGTGTGGAAGTGGTGA+AGG | - | chr6.4:39772108-39772127 | MS.gene66586:CDS | 55.0% |
| ! | GGATCATGAGTGGAGGGTGT+TGG | - | chr6.4:39772021-39772040 | MS.gene66586:CDS | 55.0% |
| CATCATATGCCGCCGGTAGC+CGG | + | chr6.4:39771628-39771647 | None:intergenic | 60.0% | |
| CGAGGCGACAACTGCTTCGA+CGG | + | chr6.4:39771579-39771598 | None:intergenic | 60.0% | |
| CGTCGAAGCAGTTGTCGCCT+CGG | - | chr6.4:39771577-39771596 | MS.gene66586:CDS | 60.0% | |
| GGTCGATTATCGCCTCGCAC+CGG | - | chr6.4:39771598-39771617 | MS.gene66586:CDS | 60.0% | |
| TGCGAGGCGATAATCGACCG+AGG | + | chr6.4:39771597-39771616 | None:intergenic | 60.0% | |
| ! | GGAGGAGAAGGGTGTGGAAG+TGG | - | chr6.4:39772102-39772121 | MS.gene66586:CDS | 60.0% |
| ATCGCCTCGCACCGGAGCAC+CGG | - | chr6.4:39771606-39771625 | MS.gene66586:CDS | 70.0% | |
| GTAGCCGGTGCTCCGGTGCG+AGG | + | chr6.4:39771613-39771632 | None:intergenic | 75.0% | |
| !! | ACCGGAGCACCGGCTACCGG+CGG | - | chr6.4:39771616-39771635 | MS.gene66586:CDS | 75.0% |
| !! | CGCACCGGAGCACCGGCTAC+CGG | - | chr6.4:39771613-39771632 | MS.gene66586:CDS | 75.0% |
| ! | GCCGCCGGTAGCCGGTGCTC+CGG | + | chr6.4:39771620-39771639 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 39771566 | 39772198 | 39771566 | ID=MS.gene66586 |
| chr6.4 | mRNA | 39771566 | 39772198 | 39771566 | ID=MS.gene66586.t1;Parent=MS.gene66586 |
| chr6.4 | exon | 39771566 | 39772198 | 39771566 | ID=MS.gene66586.t1.exon1;Parent=MS.gene66586.t1 |
| chr6.4 | CDS | 39771566 | 39772198 | 39771566 | ID=cds.MS.gene66586.t1;Parent=MS.gene66586.t1 |
| Gene Sequence |
| Protein sequence |
