AlfalfaGEDB | MS.gene053331

M. sativa cultivar XinJiangDaYe / MS.gene053331

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053331.t1	TQD99108.1	53.8	260	102	4	5	262	107	350	4.80E-46	194.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053331.t1	Q8W4K5	44.9	265	123	7	6	262	124	373	1.2e-26	121.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053331.t1	A0A540MJZ5	53.8	260	102	4	5	262	107	350	3.4e-46	194.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049501	MS.gene053331	0.806095	9.71E-50	-1.69E-46
MS.gene050807	MS.gene053331	0.816143	6.44E-52	-1.69E-46
MS.gene051388	MS.gene053331	0.800942	1.14E-48	-1.69E-46
MS.gene053331	MS.gene061333	0.81818	2.24E-52	-1.69E-46
MS.gene053331	MS.gene061334	0.806868	6.67E-50	-1.69E-46
MS.gene053331	MS.gene063197	0.842209	2.97E-58	-1.69E-46
MS.gene053331	MS.gene064944	0.813068	3.09E-51	-1.69E-46
MS.gene053331	MS.gene09051	0.803592	3.24E-49	-1.69E-46
MS.gene053331	MS.gene21960	0.80777	4.30E-50	-1.69E-46
MS.gene053331	MS.gene23105	0.814027	1.90E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 95 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCAAGGGCCCTTAAAGA+AGG	0.492777	1.3:+24566631	MS.gene053331:CDS
AAGGGCCCTTAAAGAAGGTT+TGG	0.436320	1.3:+24566636	MS.gene053331:CDS
AATGGTAAGGTAATGGTGGT+GGG	0.503707	1.3:+24566700	MS.gene053331:CDS
AATTCCTGTGGAGAAGAATT+TGG	0.302301	1.3:+24566672	MS.gene053331:CDS
AATTGCTGCTGTAATTCCTG+TGG	0.656373	1.3:+24566660	MS.gene053331:CDS
AATTTCCAAACCTTCTTTAA+GGG	0.339620	1.3:-24566641	None:intergenic
ACAGAGTCTCTGCCACCGGC+GGG	0.572238	1.3:+24565968	MS.gene053331:CDS
ACATTGAGCCGCCACCAATG+TGG	0.704591	1.3:-24566208	None:intergenic
ACCAGTTTCACCTTCTGAAA+TGG	0.365421	1.3:+24564662	MS.gene053331:CDS
AGACGGTGGGGAGGTGCTGA+AGG	0.520911	1.3:+24566008	MS.gene053331:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACCAAACAAACCAACA+TGG	-	chr1.3:24564763-24564782	None:intergenic	30.0%
AAACCATGTTTATCCATAAG+GGG	-	chr1.3:24565654-24565673	None:intergenic	30.0%
AAAGAAAAAGGAGGAAACAA+GGG	+	chr1.3:24566041-24566060	MS.gene053331:CDS	30.0%
AGTCACAGCTTCATTAAAAT+TGG	+	chr1.3:24565515-24565534	MS.gene053331:intron	30.0%
ATGGCTAAATAAGGAATCAA+AGG	-	chr1.3:24565564-24565583	None:intergenic	30.0%
CAATTTCCAAACCTTCTTTA+AGG	-	chr1.3:24566645-24566664	None:intergenic	30.0%
GCAATTGCATTTATTGCTAA+TGG	+	chr1.3:24565627-24565646	MS.gene053331:intron	30.0%
GTCATCCAATTTATGTTGTT+TGG	-	chr1.3:24564887-24564906	None:intergenic	30.0%
GTGCCTAAAAACAAAAACTT+TGG	-	chr1.3:24565037-24565056	None:intergenic	30.0%
TGGCTAAATAAGGAATCAAA+GGG	-	chr1.3:24565563-24565582	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	24564586	24566831	24564586	ID=MS.gene053331
chr1.3	mRNA	24564586	24566831	24564586	ID=MS.gene053331.t1;Parent=MS.gene053331
chr1.3	exon	24564586	24564695	24564586	ID=MS.gene053331.t1.exon1;Parent=MS.gene053331.t1
chr1.3	CDS	24564586	24564695	24564586	ID=cds.MS.gene053331.t1;Parent=MS.gene053331.t1
chr1.3	exon	24565907	24566378	24565907	ID=MS.gene053331.t1.exon2;Parent=MS.gene053331.t1
chr1.3	CDS	24565907	24566378	24565907	ID=cds.MS.gene053331.t1;Parent=MS.gene053331.t1
chr1.3	exon	24566608	24566831	24566608	ID=MS.gene053331.t1.exon3;Parent=MS.gene053331.t1
chr1.3	CDS	24566608	24566831	24566608	ID=cds.MS.gene053331.t1;Parent=MS.gene053331.t1

Gene Sequence

>MS.gene053331

CAGGAGGTATCTCAAGAACATCAGGAAGACTATCACACAGCAGTGGACCTCTGAATGGATCTTTAACAGATAGTCCACCAGTTTCACCTTCTGAAATGGATGATTTCAAGGTATATACATCTTTCTTAATTTCATAGGGTGCTTTAATTTGACATTAAAAACCTTAACAAACAACCATGTTGGTTTGTTTGGTTTTTGTTTTTCTCAAACTTTTTGGGTACAAAGCACGAAACACTGACCTCACTGTACTGTGTACTGTTAGAACCACTAGTAGTACCAATTTCAGCTTTCTCTGTTACCAAACAACATAAATTGGATGACACCCAGAGAACAGTAAAAATCAGTAATCTGCTTTGTTTTTTCTTTCTTCAATGCAAACAGCCAAACATAACTTGAATTTTAAAATGAATTGTTTTTTATTTTATTTTACTATTTTTGTTTTTGTTATCCAAAGTTTTTGTTTTTAGGCACTATCCATTGCTTATAATTTTACTAAATTAATTAAAGCTTCATTAAAGAACATATTCAACAGTTTCCAAATTAGCTTGAATTAAAGTGATCGAAGACATGTTCCATGTCTCACACGAGTCAATGTTCGACATTGCCACATATTGTTATATATATTGAATTATGTTATTTTTTTAAAATTATTATCTACGTCGACGTTTTCAGTGTTCAGTATGTGTCCATGTTTCATAAGAAACAATGAATTCATTTTGATAGAAACAATTTTTAACTCGACTTTAGTTACCTTTAAGAATCAAATGGGTTAAGAAAAAAGTCTAATTAATAATAAATAATGAAATTTATTTTAAGCCTTTAAAAGTGAAAAATTTCACAATTTAGACCTCTTTATGTGTAATTATAGTTTCCCTTTACAAAAATAAAACAGCAATTGTTTTGTTTTCTACAACTAATTTTACAAGATTAGTCACAGCTTCATTAAAATTGGTTAACAATACCAACCAAAATTACCCTTTGATTCCTTATTTAGCCATCAAGGAAACAAAAAAAAGCTGTTAAGTTTCTCTTTCTTAGATTGCAATTGCATTTATTGCTAATGGACCCCTTATGGATAAACATGGTTTTTTTAGCAAATACCAATACAAAGTTTGTTATTGCTTTGTTCAGAATCTCAGGACCTATAGTTGTAACAGCTAACAACACAGTTACTTTAACAAATATGAACAAATACCCACCAATATATATCACAAAAAATGCATCTTTTTAGTTTAAATTTGATCAAATAAGAATTAGAAAACGAAGAAGAAAGATACATACATAATTTATTATGGCTTATTATTATAATTATTCTATGCAGTATAACCGTTCAAGCAACAATCACAACAATAACAGCATTATCAACAGCTTGAACAACCATTACAGAGTCTCTGCCACCGGCGGGTGGCGGAGGCGGAGGGAAGACGGTGGGGAGGTGCTGAAGGAAGAGGAAGGAAAGAAAAAGGAGGAAACAAGGGCCACAATGCTCAGCTCCATGCTGCAGTTTCGGTTGCTGGAGTTGCAGCCGCTGTTGCGGCTATTGCAGCCGCAACTGCTGCTTCGGTCAGGTGCTCGTAAAGACGAGCAGATGGCGAAGACAGACATGGCGGTAGCGTCGGCTGCCACATTGGTGGCGGCTCAATGTGTTGAGGCTGCTGAGGCTATGGGGGCTGAGCGTGATCACCTTGCTTCGGTCGTTAGCTCTGCCGTGAATGTGAGGTCTGCCGGGGATATTACAACGTTGACGGCGCTGCTGCGACAGGTATGCGGCAACATAATTTTTTTCCTTTATTGTGATTGTTTACATGAAATTAATCATAAAAAGGATTTATTCAGAAGCATAGTTTTTCATTTATTAAATGTGTTGAATTATTAGCATTTTCAGGTCTCATTGGAATGTTGGTTAATTAATTATTTCATGAAAATGACTGACTTAAATAAAGAAAGGAAAAAAAAAAACAATGGTGGTTGTTTTTTTATATAGTTGTTGATTAATTTATGGTTTGTGGTTTGAATTCGTAGCATTGCGTGGGGCTGCAACATTGAAGGCAAGGGCCCTTAAAGAAGGTTTGGAAATTGCTGCTGTAATTCCTGTGGAGAAGAATTTGGTAGGTAATGGTAAGGTAATGGTGGTGGGGGGCAGTGGTAGTAATGGCAGCTCCAATAGTAGCTTCAGTGGCGAACTTGCACCTGAAGAAAATTTCTTGGGCATTTGTAGTAGAGAAATTGCTTGCCAGAGGTTGTGA

Protein sequence

>MS.gene053331.t1

QEVSQEHQEDYHTAVDLUMDLUQIVHQFHLLKWMISSITVQATITTITALSTAUTTITESLPPAGGGGGGKTVGRCURKRKERKRRKQGPQCSAPCCSFGCWSCSRCCGYCSRNCCFGQVLVKTSRWRRQTWRURRLPHWWRLNVLRLLRLWGLSVITLLRSLALPUMUGLPGILQRURRCCDRYAATUFFSFIHCVGLQHURQGPLKKVWKLLLUFLWRRIWUVMVRUWWWGAVVVMAAPIVASVANLHLKKISWAFVVEKLLARGC