Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053331.t1 | TQD99108.1 | 53.8 | 260 | 102 | 4 | 5 | 262 | 107 | 350 | 4.80E-46 | 194.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053331.t1 | Q8W4K5 | 44.9 | 265 | 123 | 7 | 6 | 262 | 124 | 373 | 1.2e-26 | 121.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053331.t1 | A0A540MJZ5 | 53.8 | 260 | 102 | 4 | 5 | 262 | 107 | 350 | 3.4e-46 | 194.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049501 | MS.gene053331 | 0.806095 | 9.71E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene053331 | 0.816143 | 6.44E-52 | -1.69E-46 |
| MS.gene051388 | MS.gene053331 | 0.800942 | 1.14E-48 | -1.69E-46 |
| MS.gene053331 | MS.gene061333 | 0.81818 | 2.24E-52 | -1.69E-46 |
| MS.gene053331 | MS.gene061334 | 0.806868 | 6.67E-50 | -1.69E-46 |
| MS.gene053331 | MS.gene063197 | 0.842209 | 2.97E-58 | -1.69E-46 |
| MS.gene053331 | MS.gene064944 | 0.813068 | 3.09E-51 | -1.69E-46 |
| MS.gene053331 | MS.gene09051 | 0.803592 | 3.24E-49 | -1.69E-46 |
| MS.gene053331 | MS.gene21960 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene053331 | MS.gene23105 | 0.814027 | 1.90E-51 | -1.69E-46 |
| MS.gene053331 | MS.gene23893 | 0.801479 | 8.83E-49 | -1.69E-46 |
| MS.gene053331 | MS.gene25810 | 0.806047 | 9.94E-50 | -1.69E-46 |
| MS.gene053331 | MS.gene27573 | 0.805406 | 1.36E-49 | -1.69E-46 |
| MS.gene053331 | MS.gene30739 | 0.816757 | 4.69E-52 | -1.69E-46 |
| MS.gene053331 | MS.gene35631 | 0.821831 | 3.27E-53 | -1.69E-46 |
| MS.gene053331 | MS.gene45193 | 0.843879 | 1.07E-58 | -1.69E-46 |
| MS.gene053331 | MS.gene45194 | 0.827515 | 1.50E-54 | -1.69E-46 |
| MS.gene053331 | MS.gene45609 | 0.800395 | 1.47E-48 | -1.69E-46 |
| MS.gene053331 | MS.gene49665 | 0.823248 | 1.53E-53 | -1.69E-46 |
| MS.gene053331 | MS.gene50163 | 0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene053331 | MS.gene53321 | 0.805472 | 1.31E-49 | -1.69E-46 |
| MS.gene053331 | MS.gene53586 | 0.8198 | 9.60E-53 | -1.69E-46 |
| MS.gene053331 | MS.gene57486 | 0.804543 | 2.05E-49 | -1.69E-46 |
| MS.gene053331 | MS.gene59840 | 0.815157 | 1.07E-51 | -1.69E-46 |
| MS.gene053331 | MS.gene62214 | 0.823593 | 1.27E-53 | -1.69E-46 |
| MS.gene053331 | MS.gene63327 | 0.812623 | 3.86E-51 | -1.69E-46 |
| MS.gene053331 | MS.gene64249 | 0.820565 | 6.41E-53 | -1.69E-46 |
| MS.gene053331 | MS.gene64671 | 0.803536 | 3.33E-49 | -1.69E-46 |
| MS.gene053331 | MS.gene65172 | 0.801544 | 8.56E-49 | -1.69E-46 |
| MS.gene053331 | MS.gene66923 | 0.842252 | 2.90E-58 | -1.69E-46 |
| MS.gene053331 | MS.gene69794 | 0.803039 | 4.22E-49 | -1.69E-46 |
| MS.gene053331 | MS.gene72268 | 0.839813 | 1.27E-57 | -1.69E-46 |
| MS.gene053331 | MS.gene74367 | 0.815503 | 8.94E-52 | -1.69E-46 |
| MS.gene053331 | MS.gene77781 | 0.827285 | 1.70E-54 | -1.69E-46 |
| MS.gene053331 | MS.gene81370 | 0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene053331 | MS.gene84388 | 0.8006 | 1.34E-48 | -1.69E-46 |
| MS.gene053331 | MS.gene91809 | 0.805345 | 1.40E-49 | -1.69E-46 |
| MS.gene053331 | MS.gene98089 | 0.800494 | 1.40E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCCAAACCTTCTTTA+AGG | 0.194950 | 1.3:-24566642 | None:intergenic |
| CATGCTGCAGTTTCGGTTGC+TGG | 0.221538 | 1.3:+24566080 | MS.gene053331:CDS |
| CCGGCGGGTGGCGGAGGCGG+AGG | 0.235938 | 1.3:+24565983 | MS.gene053331:CDS |
| GGAAGAGGAAGGAAAGAAAA+AGG | 0.278964 | 1.3:+24566029 | MS.gene053331:CDS |
| CCACCGGCGGGTGGCGGAGG+CGG | 0.290573 | 1.3:+24565980 | MS.gene053331:CDS |
| TGCACCTGAAGAAAATTTCT+TGG | 0.293086 | 1.3:+24566771 | MS.gene053331:CDS |
| AATTCCTGTGGAGAAGAATT+TGG | 0.302301 | 1.3:+24566672 | MS.gene053331:CDS |
| AATTTCCAAACCTTCTTTAA+GGG | 0.339620 | 1.3:-24566641 | None:intergenic |
| CTGCCACCGGCGGGTGGCGG+AGG | 0.358301 | 1.3:+24565977 | MS.gene053331:CDS |
| TCAGCTCCATGCTGCAGTTT+CGG | 0.359795 | 1.3:+24566073 | MS.gene053331:CDS |
| GCCGTGAATGTGAGGTCTGC+CGG | 0.362149 | 1.3:+24566291 | MS.gene053331:CDS |
| ACCAGTTTCACCTTCTGAAA+TGG | 0.365421 | 1.3:+24564662 | MS.gene053331:CDS |
| TGTTGAGGCTGCTGAGGCTA+TGG | 0.367362 | 1.3:+24566230 | MS.gene053331:CDS |
| CCGCAACTGCTGCTTCGGTC+AGG | 0.376531 | 1.3:+24566132 | MS.gene053331:CDS |
| TGCAGCCGCAACTGCTGCTT+CGG | 0.377227 | 1.3:+24566127 | MS.gene053331:CDS |
| TTCTGAAATGGATGATTTCA+AGG | 0.395872 | 1.3:+24564674 | MS.gene053331:CDS |
| TCCATTTCAGAAGGTGAAAC+TGG | 0.405672 | 1.3:-24564663 | None:intergenic |
| TTCGCCACTGAAGCTACTAT+TGG | 0.406875 | 1.3:-24566746 | None:intergenic |
| GGTAGCGTCGGCTGCCACAT+TGG | 0.419914 | 1.3:+24566194 | MS.gene053331:CDS |
| GCACCTGAAGAAAATTTCTT+GGG | 0.433850 | 1.3:+24566772 | MS.gene053331:CDS |
| TAATGGTAAGGTAATGGTGG+TGG | 0.434451 | 1.3:+24566699 | MS.gene053331:CDS |
| GTTGAGGCTGCTGAGGCTAT+GGG | 0.435850 | 1.3:+24566231 | MS.gene053331:CDS |
| AAGGGCCCTTAAAGAAGGTT+TGG | 0.436320 | 1.3:+24566636 | MS.gene053331:CDS |
| CATGTAAACAATCACAATAA+AGG | 0.441095 | 1.3:-24566371 | None:intergenic |
| GGAGGTATCTCAAGAACATC+AGG | 0.446813 | 1.3:+24564588 | MS.gene053331:CDS |
| TGGTAAGGTAATGGTGGTGG+GGG | 0.455776 | 1.3:+24566702 | MS.gene053331:CDS |
| TCTCTGCCACCGGCGGGTGG+CGG | 0.456572 | 1.3:+24565974 | MS.gene053331:CDS |
| GCGGAGGGAAGACGGTGGGG+AGG | 0.464521 | 1.3:+24565999 | MS.gene053331:CDS |
| CCGTGAATGTGAGGTCTGCC+GGG | 0.466362 | 1.3:+24566292 | MS.gene053331:CDS |
| CGGCGGGTGGCGGAGGCGGA+GGG | 0.466690 | 1.3:+24565984 | MS.gene053331:CDS |
| GAGAAGAATTTGGTAGGTAA+TGG | 0.471793 | 1.3:+24566682 | MS.gene053331:CDS |
| TGGCGGAGGCGGAGGGAAGA+CGG | 0.479655 | 1.3:+24565991 | MS.gene053331:CDS |
| TTTAAGAAGCTCACAACCTC+TGG | 0.486012 | 1.3:-24566819 | None:intergenic |
| GGTAGGTAATGGTAAGGTAA+TGG | 0.489239 | 1.3:+24566693 | MS.gene053331:CDS |
| TGAGCGTGATCACCTTGCTT+CGG | 0.492692 | 1.3:+24566257 | MS.gene053331:CDS |
| AAGGCAAGGGCCCTTAAAGA+AGG | 0.492777 | 1.3:+24566631 | MS.gene053331:CDS |
| GAGGCGGAGGGAAGACGGTG+GGG | 0.498373 | 1.3:+24565996 | MS.gene053331:CDS |
| TGGGGAGGTGCTGAAGGAAG+AGG | 0.501697 | 1.3:+24566014 | MS.gene053331:CDS |
| TTGAATTCGTAGCATTGCGT+GGG | 0.502451 | 1.3:+24566596 | MS.gene053331:intron |
| AATGGTAAGGTAATGGTGGT+GGG | 0.503707 | 1.3:+24566700 | MS.gene053331:CDS |
| CCCGGCAGACCTCACATTCA+CGG | 0.504849 | 1.3:-24566292 | None:intergenic |
| TTTGAATTCGTAGCATTGCG+TGG | 0.505388 | 1.3:+24566595 | MS.gene053331:intron |
| GCGTGGGGCTGCAACATTGA+AGG | 0.507167 | 1.3:+24566612 | MS.gene053331:CDS |
| CCGCCTCCGCCACCCGCCGG+TGG | 0.507308 | 1.3:-24565980 | None:intergenic |
| CGGAGGCGGAGGGAAGACGG+TGG | 0.509388 | 1.3:+24565994 | MS.gene053331:CDS |
| TTGAGGCTGCTGAGGCTATG+GGG | 0.510751 | 1.3:+24566232 | MS.gene053331:CDS |
| GACAGACATGGCGGTAGCGT+CGG | 0.513746 | 1.3:+24566182 | MS.gene053331:CDS |
| CACAGCAGTGGACCTCTGAA+TGG | 0.517311 | 1.3:+24564621 | MS.gene053331:CDS |
| GTTGACGGCGCTGCTGCGAC+AGG | 0.519628 | 1.3:+24566326 | MS.gene053331:CDS |
| AGACGGTGGGGAGGTGCTGA+AGG | 0.520911 | 1.3:+24566008 | MS.gene053331:CDS |
| CCTCCGCCTCCGCCACCCGC+CGG | 0.520933 | 1.3:-24565983 | None:intergenic |
| GGAGGCGGAGGGAAGACGGT+GGG | 0.523154 | 1.3:+24565995 | MS.gene053331:CDS |
| GTCGGCTGCCACATTGGTGG+CGG | 0.524542 | 1.3:+24566200 | MS.gene053331:CDS |
| CCTACCAAATTCTTCTCCAC+AGG | 0.525363 | 1.3:-24566676 | None:intergenic |
| TGTTGTGATTGTTGCTTGAA+CGG | 0.529425 | 1.3:-24565912 | None:intergenic |
| ATGGTAAGGTAATGGTGGTG+GGG | 0.530333 | 1.3:+24566701 | MS.gene053331:CDS |
| TACAGAGTCTCTGCCACCGG+CGG | 0.530904 | 1.3:+24565967 | MS.gene053331:CDS |
| GGTAAGGTAATGGTGGTGGG+GGG | 0.533238 | 1.3:+24566703 | MS.gene053331:CDS |
| GGGCTGCAACATTGAAGGCA+AGG | 0.533544 | 1.3:+24566617 | MS.gene053331:CDS |
| TGAGGCTGCTGAGGCTATGG+GGG | 0.541052 | 1.3:+24566233 | MS.gene053331:CDS |
| AGCGTCGGCTGCCACATTGG+TGG | 0.546806 | 1.3:+24566197 | MS.gene053331:CDS |
| CGGGGATATTACAACGTTGA+CGG | 0.548848 | 1.3:+24566311 | MS.gene053331:CDS |
| GCGCTGCTGCGACAGGTATG+CGG | 0.551933 | 1.3:+24566333 | MS.gene053331:CDS |
| GGCTGCAATAGCCGCAACAG+CGG | 0.560843 | 1.3:-24566111 | None:intergenic |
| TTGAAATCATCCATTTCAGA+AGG | 0.569576 | 1.3:-24564672 | None:intergenic |
| ACAGAGTCTCTGCCACCGGC+GGG | 0.572238 | 1.3:+24565968 | MS.gene053331:CDS |
| GAGGTGCTGAAGGAAGAGGA+AGG | 0.578155 | 1.3:+24566018 | MS.gene053331:CDS |
| GAGTCTCTGCCACCGGCGGG+TGG | 0.578521 | 1.3:+24565971 | MS.gene053331:CDS |
| CCTGACCGAAGCAGCAGTTG+CGG | 0.578754 | 1.3:-24566132 | None:intergenic |
| GAATTTGGTAGGTAATGGTA+AGG | 0.587257 | 1.3:+24566687 | MS.gene053331:CDS |
| GGCTGCAACATTGAAGGCAA+GGG | 0.588562 | 1.3:+24566618 | MS.gene053331:CDS |
| TGCTCGTAAAGACGAGCAGA+TGG | 0.589082 | 1.3:+24566155 | MS.gene053331:CDS |
| CCTGTGGAGAAGAATTTGGT+AGG | 0.590190 | 1.3:+24566676 | MS.gene053331:CDS |
| TTAGCTCTGCCGTGAATGTG+AGG | 0.602071 | 1.3:+24566283 | MS.gene053331:CDS |
| CGGTGGCAGAGACTCTGTAA+TGG | 0.602908 | 1.3:-24565963 | None:intergenic |
| CGTCAACGTTGTAATATCCC+CGG | 0.604373 | 1.3:-24566310 | None:intergenic |
| CATTACAGAGTCTCTGCCAC+CGG | 0.605075 | 1.3:+24565964 | MS.gene053331:CDS |
| TGGAGTTGCAGCCGCTGTTG+CGG | 0.611144 | 1.3:+24566100 | MS.gene053331:CDS |
| CAGAGCTAACGACCGAAGCA+AGG | 0.613746 | 1.3:-24566269 | None:intergenic |
| AGCTCCAATAGTAGCTTCAG+TGG | 0.618065 | 1.3:+24566742 | MS.gene053331:CDS |
| TCAATGTGTTGAGGCTGCTG+AGG | 0.620073 | 1.3:+24566224 | MS.gene053331:CDS |
| CAGCAACCGAAACTGCAGCA+TGG | 0.627948 | 1.3:-24566079 | None:intergenic |
| GTAGAGAAATTGCTTGCCAG+AGG | 0.628239 | 1.3:+24566803 | MS.gene053331:CDS |
| AGGTAATGGTAAGGTAATGG+TGG | 0.638413 | 1.3:+24566696 | MS.gene053331:CDS |
| ATTTCAGAAGGTGAAACTGG+TGG | 0.639220 | 1.3:-24564660 | None:intergenic |
| CAGCATGGAGCTGAGCATTG+TGG | 0.645470 | 1.3:-24566064 | None:intergenic |
| TCTGTTAAAGATCCATTCAG+AGG | 0.654153 | 1.3:-24564633 | None:intergenic |
| GCAGATGGCGAAGACAGACA+TGG | 0.655202 | 1.3:+24566170 | MS.gene053331:CDS |
| AATTGCTGCTGTAATTCCTG+TGG | 0.656373 | 1.3:+24566660 | MS.gene053331:CDS |
| TGAATTCGTAGCATTGCGTG+GGG | 0.663115 | 1.3:+24566597 | MS.gene053331:intron |
| GGAAGACTATCACACAGCAG+TGG | 0.682507 | 1.3:+24564609 | MS.gene053331:CDS |
| CGTGAATGTGAGGTCTGCCG+GGG | 0.682902 | 1.3:+24566293 | MS.gene053331:CDS |
| GGTGGCGGCTCAATGTGTTG+AGG | 0.700934 | 1.3:+24566215 | MS.gene053331:CDS |
| ACATTGAGCCGCCACCAATG+TGG | 0.704591 | 1.3:-24566208 | None:intergenic |
| GATGGCGAAGACAGACATGG+CGG | 0.768845 | 1.3:+24566173 | MS.gene053331:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATGAAATTAATCATAAAA+AGG | + | chr1.3:24566389-24566408 | MS.gene053331:intron | 15.0% |
| !! | GATACATACATAATTTATTA+TGG | + | chr1.3:24565858-24565877 | MS.gene053331:intron | 15.0% |
| !! | TCAATATATATAACAATATG+TGG | - | chr1.3:24565193-24565212 | None:intergenic | 15.0% |
| !! | TTTAGTAAAATTATAAGCAA+TGG | - | chr1.3:24565063-24565082 | None:intergenic | 15.0% |
| !!! | TATAGTTGTTGATTAATTTA+TGG | + | chr1.3:24566565-24566584 | MS.gene053331:intron | 15.0% |
| !!! | TTTAAAATTCAAGTTATGTT+TGG | - | chr1.3:24564970-24564989 | None:intergenic | 15.0% |
| !! | AACTATAATTACACATAAAG+AGG | - | chr1.3:24565436-24565455 | None:intergenic | 20.0% |
| !! | ACATCTTTCTTAATTTCATA+GGG | + | chr1.3:24564702-24564721 | MS.gene053331:intron | 20.0% |
| !! | GAAAGGAAAAAAAAAAACAA+TGG | + | chr1.3:24566528-24566547 | MS.gene053331:intron | 20.0% |
| !! | TACATCTTTCTTAATTTCAT+AGG | + | chr1.3:24564701-24564720 | MS.gene053331:intron | 20.0% |
| !!! | GCATTTTTTGTGATATATAT+TGG | - | chr1.3:24565787-24565806 | None:intergenic | 20.0% |
| !!! | GTGAAATTTTTCACTTTTAA+AGG | - | chr1.3:24565405-24565424 | None:intergenic | 20.0% |
| !!! | TATCCAAAGTTTTTGTTTTT+AGG | + | chr1.3:24565031-24565050 | MS.gene053331:intron | 20.0% |
| !!! | TGCTGTTTTATTTTTGTAAA+GGG | - | chr1.3:24565460-24565479 | None:intergenic | 20.0% |
| !!! | TTGCTGTTTTATTTTTGTAA+AGG | - | chr1.3:24565461-24565480 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTCAAACTTTTT+GGG | + | chr1.3:24564781-24564800 | MS.gene053331:intron | 20.0% |
| !!! | TTTGTTTTTCTCAAACTTTT+TGG | + | chr1.3:24564780-24564799 | MS.gene053331:intron | 20.0% |
| !!! | TTTTTGTGATATATATTGGT+GGG | - | chr1.3:24565783-24565802 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGATATATATTGG+TGG | - | chr1.3:24565784-24565803 | None:intergenic | 20.0% |
| ! | AAAAACCATGTTTATCCATA+AGG | - | chr1.3:24565656-24565675 | None:intergenic | 25.0% |
| ! | AAAACCATGTTTATCCATAA+GGG | - | chr1.3:24565655-24565674 | None:intergenic | 25.0% |
| ! | AATTTCCAAACCTTCTTTAA+GGG | - | chr1.3:24566644-24566663 | None:intergenic | 25.0% |
| ! | AGCAATAACAAACTTTGTAT+TGG | - | chr1.3:24565689-24565708 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAAAACAATGG+TGG | + | chr1.3:24566531-24566550 | MS.gene053331:intron | 25.0% |
| ! | CACTTTAATTCAAGCTAATT+TGG | - | chr1.3:24565124-24565143 | None:intergenic | 25.0% |
| ! | CATGTAAACAATCACAATAA+AGG | - | chr1.3:24566374-24566393 | None:intergenic | 25.0% |
| ! | GTTGATTAATTTATGGTTTG+TGG | + | chr1.3:24566572-24566591 | MS.gene053331:intron | 25.0% |
| ! | TGTTACCAAACAACATAAAT+TGG | + | chr1.3:24564879-24564898 | MS.gene053331:intron | 25.0% |
| ! | TTAACCCATTTGATTCTTAA+AGG | - | chr1.3:24565339-24565358 | None:intergenic | 25.0% |
| !! | AGTTACCTTTAAGAATCAAA+TGG | + | chr1.3:24565331-24565350 | MS.gene053331:intron | 25.0% |
| !! | GTTACCTTTAAGAATCAAAT+GGG | + | chr1.3:24565332-24565351 | MS.gene053331:intron | 25.0% |
| !! | GTTGAATTATTAGCATTTTC+AGG | + | chr1.3:24566449-24566468 | MS.gene053331:intron | 25.0% |
| !! | TCATTGTTTCTTATGAAACA+TGG | - | chr1.3:24565275-24565294 | None:intergenic | 25.0% |
| !! | TGACTGACTTAAATAAAGAA+AGG | + | chr1.3:24566511-24566530 | MS.gene053331:intron | 25.0% |
| AAAAACCAAACAAACCAACA+TGG | - | chr1.3:24564763-24564782 | None:intergenic | 30.0% | |
| AAACCATGTTTATCCATAAG+GGG | - | chr1.3:24565654-24565673 | None:intergenic | 30.0% | |
| AAAGAAAAAGGAGGAAACAA+GGG | + | chr1.3:24566041-24566060 | MS.gene053331:CDS | 30.0% | |
| AGTCACAGCTTCATTAAAAT+TGG | + | chr1.3:24565515-24565534 | MS.gene053331:intron | 30.0% | |
| ATGGCTAAATAAGGAATCAA+AGG | - | chr1.3:24565564-24565583 | None:intergenic | 30.0% | |
| CAATTTCCAAACCTTCTTTA+AGG | - | chr1.3:24566645-24566664 | None:intergenic | 30.0% | |
| GCAATTGCATTTATTGCTAA+TGG | + | chr1.3:24565627-24565646 | MS.gene053331:intron | 30.0% | |
| GTCATCCAATTTATGTTGTT+TGG | - | chr1.3:24564887-24564906 | None:intergenic | 30.0% | |
| GTGCCTAAAAACAAAAACTT+TGG | - | chr1.3:24565037-24565056 | None:intergenic | 30.0% | |
| TGGCTAAATAAGGAATCAAA+GGG | - | chr1.3:24565563-24565582 | None:intergenic | 30.0% | |
| TTGAAATCATCCATTTCAGA+AGG | - | chr1.3:24564675-24564694 | None:intergenic | 30.0% | |
| TTGTTAGCTGTTACAACTAT+AGG | - | chr1.3:24565730-24565749 | None:intergenic | 30.0% | |
| ! | AAGGAATCAAAGGGTAATTT+TGG | - | chr1.3:24565554-24565573 | None:intergenic | 30.0% |
| !! | AATCAAAGGGTAATTTTGGT+TGG | - | chr1.3:24565550-24565569 | None:intergenic | 30.0% |
| !! | ACTGATTTTTACTGTTCTCT+GGG | - | chr1.3:24564911-24564930 | None:intergenic | 30.0% |
| !! | TTCTGAAATGGATGATTTCA+AGG | + | chr1.3:24564674-24564693 | MS.gene053331:CDS | 30.0% |
| !!! | GCTTTTTTTTGTTTCCTTGA+TGG | - | chr1.3:24565583-24565602 | None:intergenic | 30.0% |
| !!! | TACTGATTTTTACTGTTCTC+TGG | - | chr1.3:24564912-24564931 | None:intergenic | 30.0% |
| AATTCCTGTGGAGAAGAATT+TGG | + | chr1.3:24566672-24566691 | MS.gene053331:CDS | 35.0% | |
| ACCTTAACAAACAACCATGT+TGG | + | chr1.3:24564746-24564765 | MS.gene053331:intron | 35.0% | |
| GAAAGAAAAAGGAGGAAACA+AGG | + | chr1.3:24566040-24566059 | MS.gene053331:CDS | 35.0% | |
| GAGAAGAATTTGGTAGGTAA+TGG | + | chr1.3:24566682-24566701 | MS.gene053331:CDS | 35.0% | |
| GCACCTGAAGAAAATTTCTT+GGG | + | chr1.3:24566772-24566791 | MS.gene053331:CDS | 35.0% | |
| GTAACAGAGAAAGCTGAAAT+TGG | - | chr1.3:24564865-24564884 | None:intergenic | 35.0% | |
| TCTGTTAAAGATCCATTCAG+AGG | - | chr1.3:24564636-24564655 | None:intergenic | 35.0% | |
| TGCACCTGAAGAAAATTTCT+TGG | + | chr1.3:24566771-24566790 | MS.gene053331:CDS | 35.0% | |
| ! | ACCAACATGGTTGTTTGTTA+AGG | - | chr1.3:24564750-24564769 | None:intergenic | 35.0% |
| ! | ATGCCCAAGAAATTTTCTTC+AGG | - | chr1.3:24566778-24566797 | None:intergenic | 35.0% |
| ! | ATTGCTTTGTTCAGAATCTC+AGG | + | chr1.3:24565703-24565722 | MS.gene053331:intron | 35.0% |
| ! | GAATTTGGTAGGTAATGGTA+AGG | + | chr1.3:24566687-24566706 | MS.gene053331:CDS | 35.0% |
| ! | GATTCCTTATTTAGCCATCA+AGG | + | chr1.3:24565566-24565585 | MS.gene053331:intron | 35.0% |
| ! | GTTTCCTTGATGGCTAAATA+AGG | - | chr1.3:24565573-24565592 | None:intergenic | 35.0% |
| ! | TGTTGTGATTGTTGCTTGAA+CGG | - | chr1.3:24565915-24565934 | None:intergenic | 35.0% |
| !! | AACAACCATGTTGGTTTGTT+TGG | + | chr1.3:24564755-24564774 | MS.gene053331:intron | 35.0% |
| !!! | TTAGCATTTTCAGGTCTCAT+TGG | + | chr1.3:24566458-24566477 | MS.gene053331:intron | 35.0% |
| AATTGCTGCTGTAATTCCTG+TGG | + | chr1.3:24566660-24566679 | MS.gene053331:CDS | 40.0% | |
| AGAGGAAGGAAAGAAAAAGG+AGG | + | chr1.3:24566032-24566051 | MS.gene053331:CDS | 40.0% | |
| ATTTCAGAAGGTGAAACTGG+TGG | - | chr1.3:24564663-24564682 | None:intergenic | 40.0% | |
| GCTGAAATTGGTACTACTAG+TGG | - | chr1.3:24564853-24564872 | None:intergenic | 40.0% | |
| GGAAGAGGAAGGAAAGAAAA+AGG | + | chr1.3:24566029-24566048 | MS.gene053331:CDS | 40.0% | |
| TAACAGTACACAGTACAGTG+AGG | - | chr1.3:24564827-24564846 | None:intergenic | 40.0% | |
| TCCATTTCAGAAGGTGAAAC+TGG | - | chr1.3:24564666-24564685 | None:intergenic | 40.0% | |
| TTCAGGTCTCATTGGAATGT+TGG | + | chr1.3:24566466-24566485 | MS.gene053331:intron | 40.0% | |
| TTGAATTCGTAGCATTGCGT+GGG | + | chr1.3:24566596-24566615 | MS.gene053331:intron | 40.0% | |
| TTTGAATTCGTAGCATTGCG+TGG | + | chr1.3:24566595-24566614 | MS.gene053331:intron | 40.0% | |
| ! | AATGGTAAGGTAATGGTGGT+GGG | + | chr1.3:24566700-24566719 | MS.gene053331:CDS | 40.0% |
| ! | ACCAGTTTCACCTTCTGAAA+TGG | + | chr1.3:24564662-24564681 | MS.gene053331:CDS | 40.0% |
| ! | AGGTAATGGTAAGGTAATGG+TGG | + | chr1.3:24566696-24566715 | MS.gene053331:CDS | 40.0% |
| ! | GGTAGGTAATGGTAAGGTAA+TGG | + | chr1.3:24566693-24566712 | MS.gene053331:CDS | 40.0% |
| ! | TAATGGTAAGGTAATGGTGG+TGG | + | chr1.3:24566699-24566718 | MS.gene053331:CDS | 40.0% |
| ! | TATTGCTAATGGACCCCTTA+TGG | + | chr1.3:24565638-24565657 | MS.gene053331:intron | 40.0% |
| AAGGGCCCTTAAAGAAGGTT+TGG | + | chr1.3:24566636-24566655 | MS.gene053331:CDS | 45.0% | |
| AGCTCCAATAGTAGCTTCAG+TGG | + | chr1.3:24566742-24566761 | MS.gene053331:CDS | 45.0% | |
| CCTACCAAATTCTTCTCCAC+AGG | - | chr1.3:24566679-24566698 | None:intergenic | 45.0% | |
| CCTGTGGAGAAGAATTTGGT+AGG | + | chr1.3:24566676-24566695 | MS.gene053331:CDS | 45.0% | |
| CGGGGATATTACAACGTTGA+CGG | + | chr1.3:24566311-24566330 | MS.gene053331:CDS | 45.0% | |
| CGTCAACGTTGTAATATCCC+CGG | - | chr1.3:24566313-24566332 | None:intergenic | 45.0% | |
| GGACCCCTTATGGATAAACA+TGG | + | chr1.3:24565648-24565667 | MS.gene053331:intron | 45.0% | |
| GTAGAGAAATTGCTTGCCAG+AGG | + | chr1.3:24566803-24566822 | MS.gene053331:CDS | 45.0% | |
| TGAATTCGTAGCATTGCGTG+GGG | + | chr1.3:24566597-24566616 | MS.gene053331:intron | 45.0% | |
| TTCGCCACTGAAGCTACTAT+TGG | - | chr1.3:24566749-24566768 | None:intergenic | 45.0% | |
| ! | ATGGTAAGGTAATGGTGGTG+GGG | + | chr1.3:24566701-24566720 | MS.gene053331:CDS | 45.0% |
| !! | ACATTGACTCGTGTGAGACA+TGG | - | chr1.3:24565161-24565180 | None:intergenic | 45.0% |
| !! | GGAGGTATCTCAAGAACATC+AGG | + | chr1.3:24564588-24564607 | MS.gene053331:CDS | 45.0% |
| AAGGCAAGGGCCCTTAAAGA+AGG | + | chr1.3:24566631-24566650 | MS.gene053331:CDS | 50.0% | |
| CATTACAGAGTCTCTGCCAC+CGG | + | chr1.3:24565964-24565983 | MS.gene053331:CDS | 50.0% | |
| GGAAGACTATCACACAGCAG+TGG | + | chr1.3:24564609-24564628 | MS.gene053331:CDS | 50.0% | |
| GGCTGCAACATTGAAGGCAA+GGG | + | chr1.3:24566618-24566637 | MS.gene053331:CDS | 50.0% | |
| TCAATGTGTTGAGGCTGCTG+AGG | + | chr1.3:24566224-24566243 | MS.gene053331:CDS | 50.0% | |
| TCAGCTCCATGCTGCAGTTT+CGG | + | chr1.3:24566073-24566092 | MS.gene053331:CDS | 50.0% | |
| TGAGCGTGATCACCTTGCTT+CGG | + | chr1.3:24566257-24566276 | MS.gene053331:CDS | 50.0% | |
| TGCTCGTAAAGACGAGCAGA+TGG | + | chr1.3:24566155-24566174 | MS.gene053331:CDS | 50.0% | |
| !! | TGGTAAGGTAATGGTGGTGG+GGG | + | chr1.3:24566702-24566721 | MS.gene053331:CDS | 50.0% |
| !! | TTAGCTCTGCCGTGAATGTG+AGG | + | chr1.3:24566283-24566302 | MS.gene053331:CDS | 50.0% |
| ACATTGAGCCGCCACCAATG+TGG | - | chr1.3:24566211-24566230 | None:intergenic | 55.0% | |
| CACAGCAGTGGACCTCTGAA+TGG | + | chr1.3:24564621-24564640 | MS.gene053331:CDS | 55.0% | |
| CAGAGCTAACGACCGAAGCA+AGG | - | chr1.3:24566272-24566291 | None:intergenic | 55.0% | |
| CAGCAACCGAAACTGCAGCA+TGG | - | chr1.3:24566082-24566101 | None:intergenic | 55.0% | |
| CATGCTGCAGTTTCGGTTGC+TGG | + | chr1.3:24566080-24566099 | MS.gene053331:CDS | 55.0% | |
| CGGTGGCAGAGACTCTGTAA+TGG | - | chr1.3:24565966-24565985 | None:intergenic | 55.0% | |
| GATGGCGAAGACAGACATGG+CGG | + | chr1.3:24566173-24566192 | MS.gene053331:CDS | 55.0% | |
| GCAGATGGCGAAGACAGACA+TGG | + | chr1.3:24566170-24566189 | MS.gene053331:CDS | 55.0% | |
| GGGCTGCAACATTGAAGGCA+AGG | + | chr1.3:24566617-24566636 | MS.gene053331:CDS | 55.0% | |
| GTTGAGGCTGCTGAGGCTAT+GGG | + | chr1.3:24566231-24566250 | MS.gene053331:CDS | 55.0% | |
| TGTTGAGGCTGCTGAGGCTA+TGG | + | chr1.3:24566230-24566249 | MS.gene053331:CDS | 55.0% | |
| TTGAGGCTGCTGAGGCTATG+GGG | + | chr1.3:24566232-24566251 | MS.gene053331:CDS | 55.0% | |
| ! | CAGCATGGAGCTGAGCATTG+TGG | - | chr1.3:24566067-24566086 | None:intergenic | 55.0% |
| !! | GAGGTGCTGAAGGAAGAGGA+AGG | + | chr1.3:24566018-24566037 | MS.gene053331:CDS | 55.0% |
| !! | GGTAAGGTAATGGTGGTGGG+GGG | + | chr1.3:24566703-24566722 | MS.gene053331:CDS | 55.0% |
| CCCGGCAGACCTCACATTCA+CGG | - | chr1.3:24566295-24566314 | None:intergenic | 60.0% | |
| CCGTGAATGTGAGGTCTGCC+GGG | + | chr1.3:24566292-24566311 | MS.gene053331:CDS | 60.0% | |
| CCTGACCGAAGCAGCAGTTG+CGG | - | chr1.3:24566135-24566154 | None:intergenic | 60.0% | |
| CGTGAATGTGAGGTCTGCCG+GGG | + | chr1.3:24566293-24566312 | MS.gene053331:CDS | 60.0% | |
| GACAGACATGGCGGTAGCGT+CGG | + | chr1.3:24566182-24566201 | MS.gene053331:CDS | 60.0% | |
| GCCGTGAATGTGAGGTCTGC+CGG | + | chr1.3:24566291-24566310 | MS.gene053331:CDS | 60.0% | |
| GCGTGGGGCTGCAACATTGA+AGG | + | chr1.3:24566612-24566631 | MS.gene053331:CDS | 60.0% | |
| GGCTGCAATAGCCGCAACAG+CGG | - | chr1.3:24566114-24566133 | None:intergenic | 60.0% | |
| GTGGGGGGCAGTGGTAGTAA+TGG | + | chr1.3:24566718-24566737 | MS.gene053331:CDS | 60.0% | |
| TACAGAGTCTCTGCCACCGG+CGG | + | chr1.3:24565967-24565986 | MS.gene053331:CDS | 60.0% | |
| TGAGGCTGCTGAGGCTATGG+GGG | + | chr1.3:24566233-24566252 | MS.gene053331:CDS | 60.0% | |
| TGGAGTTGCAGCCGCTGTTG+CGG | + | chr1.3:24566100-24566119 | MS.gene053331:CDS | 60.0% | |
| ! | GGTGGCGGCTCAATGTGTTG+AGG | + | chr1.3:24566215-24566234 | MS.gene053331:CDS | 60.0% |
| ! | TGCAGCCGCAACTGCTGCTT+CGG | + | chr1.3:24566127-24566146 | MS.gene053331:CDS | 60.0% |
| !! | TGGGGAGGTGCTGAAGGAAG+AGG | + | chr1.3:24566014-24566033 | MS.gene053331:CDS | 60.0% |
| ACAGAGTCTCTGCCACCGGC+GGG | + | chr1.3:24565968-24565987 | MS.gene053331:CDS | 65.0% | |
| GCGCTGCTGCGACAGGTATG+CGG | + | chr1.3:24566333-24566352 | MS.gene053331:CDS | 65.0% | |
| GTCGGCTGCCACATTGGTGG+CGG | + | chr1.3:24566200-24566219 | MS.gene053331:CDS | 65.0% | |
| ! | CCGCAACTGCTGCTTCGGTC+AGG | + | chr1.3:24566132-24566151 | MS.gene053331:CDS | 65.0% |
| !! | AGACGGTGGGGAGGTGCTGA+AGG | + | chr1.3:24566008-24566027 | MS.gene053331:CDS | 65.0% |
| !! | AGCGTCGGCTGCCACATTGG+TGG | + | chr1.3:24566197-24566216 | MS.gene053331:CDS | 65.0% |
| !! | GGTAGCGTCGGCTGCCACAT+TGG | + | chr1.3:24566194-24566213 | MS.gene053331:CDS | 65.0% |
| !! | GTAATGGTGGTGGGGGGCAG+TGG | + | chr1.3:24566709-24566728 | MS.gene053331:CDS | 65.0% |
| GAGGCGGAGGGAAGACGGTG+GGG | + | chr1.3:24565996-24566015 | MS.gene053331:CDS | 70.0% | |
| GGAGGCGGAGGGAAGACGGT+GGG | + | chr1.3:24565995-24566014 | MS.gene053331:CDS | 70.0% | |
| GTTGACGGCGCTGCTGCGAC+AGG | + | chr1.3:24566326-24566345 | MS.gene053331:CDS | 70.0% | |
| TGGCGGAGGCGGAGGGAAGA+CGG | + | chr1.3:24565991-24566010 | MS.gene053331:CDS | 70.0% | |
| CGGAGGCGGAGGGAAGACGG+TGG | + | chr1.3:24565994-24566013 | MS.gene053331:CDS | 75.0% | |
| GAGTCTCTGCCACCGGCGGG+TGG | + | chr1.3:24565971-24565990 | MS.gene053331:CDS | 75.0% | |
| GCGGAGGGAAGACGGTGGGG+AGG | + | chr1.3:24565999-24566018 | MS.gene053331:CDS | 75.0% | |
| TCTCTGCCACCGGCGGGTGG+CGG | + | chr1.3:24565974-24565993 | MS.gene053331:CDS | 75.0% | |
| ! | CCTCCGCCTCCGCCACCCGC+CGG | - | chr1.3:24565986-24566005 | None:intergenic | 85.0% |
| !! | CTGCCACCGGCGGGTGGCGG+AGG | + | chr1.3:24565977-24565996 | MS.gene053331:CDS | 85.0% |
| !!! | CCACCGGCGGGTGGCGGAGG+CGG | + | chr1.3:24565980-24565999 | MS.gene053331:CDS | 85.0% |
| !!! | CGGCGGGTGGCGGAGGCGGA+GGG | + | chr1.3:24565984-24566003 | MS.gene053331:CDS | 85.0% |
| ! | CCGCCTCCGCCACCCGCCGG+TGG | - | chr1.3:24565983-24566002 | None:intergenic | 90.0% |
| !!! | CCGGCGGGTGGCGGAGGCGG+AGG | + | chr1.3:24565983-24566002 | MS.gene053331:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 24564586 | 24566831 | 24564586 | ID=MS.gene053331 |
| chr1.3 | mRNA | 24564586 | 24566831 | 24564586 | ID=MS.gene053331.t1;Parent=MS.gene053331 |
| chr1.3 | exon | 24564586 | 24564695 | 24564586 | ID=MS.gene053331.t1.exon1;Parent=MS.gene053331.t1 |
| chr1.3 | CDS | 24564586 | 24564695 | 24564586 | ID=cds.MS.gene053331.t1;Parent=MS.gene053331.t1 |
| chr1.3 | exon | 24565907 | 24566378 | 24565907 | ID=MS.gene053331.t1.exon2;Parent=MS.gene053331.t1 |
| chr1.3 | CDS | 24565907 | 24566378 | 24565907 | ID=cds.MS.gene053331.t1;Parent=MS.gene053331.t1 |
| chr1.3 | exon | 24566608 | 24566831 | 24566608 | ID=MS.gene053331.t1.exon3;Parent=MS.gene053331.t1 |
| chr1.3 | CDS | 24566608 | 24566831 | 24566608 | ID=cds.MS.gene053331.t1;Parent=MS.gene053331.t1 |
| Gene Sequence |
| Protein sequence |
