AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66968

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66968.t1 MTR_6g032820 98.104 422 8 0 1 422 16 437 0.0 853
MS.gene66968.t1 MTR_7g085390 79.059 425 86 3 1 425 16 437 0.0 685
MS.gene66968.t1 MTR_4g112025 62.077 414 153 4 10 422 30 440 0.0 521
MS.gene66968.t1 MTR_1g010120 60.192 417 157 5 8 422 23 432 3.53e-176 501
MS.gene66968.t1 MTR_1g053320 59.420 414 163 5 11 422 30 440 8.78e-175 498
MS.gene66968.t1 MTR_8g092070 55.769 416 178 4 8 422 31 441 2.49e-165 478
MS.gene66968.t1 MTR_4g124440 54.217 415 180 5 10 422 27 433 5.92e-157 453
MS.gene66968.t1 MTR_3g108600 55.396 417 159 5 8 422 28 419 5.56e-154 445
MS.gene66968.t1 MTR_3g095050 53.846 416 184 6 8 422 31 439 8.34e-149 432
MS.gene66968.t1 MTR_2g027560 51.559 417 191 6 9 422 26 434 1.05e-147 430
MS.gene66968.t1 MTR_4g134280 54.740 327 136 4 100 422 2 320 7.59e-121 357
MS.gene66968.t1 MTR_3g031770 46.024 415 213 8 9 422 25 429 3.20e-114 344
MS.gene66968.t1 MTR_3g116510 33.879 428 256 16 11 425 28 441 2.32e-59 201
MS.gene66968.t1 MTR_4g069940 33.913 460 266 19 1 439 16 458 2.39e-59 201
MS.gene66968.t1 MTR_1g031900 32.414 435 256 17 11 429 24 436 1.88e-56 194
MS.gene66968.t1 MTR_1g031900 32.414 435 256 17 11 429 24 436 3.41e-56 194
MS.gene66968.t1 MTR_7g026340 33.487 433 248 18 8 421 20 431 5.00e-56 192
MS.gene66968.t1 MTR_6g088885 31.469 429 260 16 11 422 27 438 1.57e-54 189
MS.gene66968.t1 MTR_5g085580 32.000 450 244 17 11 422 25 450 4.46e-54 187
MS.gene66968.t1 MTR_4g088155 30.889 450 272 20 11 438 23 455 7.59e-52 181
MS.gene66968.t1 MTR_1g056640 30.396 454 257 18 11 422 38 474 1.63e-50 178
MS.gene66968.t1 MTR_4g076470 32.822 326 200 8 5 329 17 324 1.65e-50 174
MS.gene66968.t1 MTR_4g076490 33.742 326 194 10 11 334 97 402 4.91e-50 175
MS.gene66968.t1 MTR_7g081350 33.742 326 196 11 10 331 26 335 5.51e-50 173
MS.gene66968.t1 MTR_4g076255 33.636 330 196 9 5 331 19 328 6.73e-50 172
MS.gene66968.t1 MTR_4g010200 35.185 324 187 12 12 325 34 344 9.00e-50 174
MS.gene66968.t1 MTR_4g076430 32.822 326 200 8 5 329 17 324 2.35e-49 171
MS.gene66968.t1 MTR_4g076570 32.722 327 202 9 9 331 20 332 3.39e-49 172
MS.gene66968.t1 MTR_1g077990 33.133 332 197 12 8 329 28 344 7.76e-49 172
MS.gene66968.t1 MTR_1g007810 36.196 326 184 13 5 321 10 320 8.85e-49 171
MS.gene66968.t1 MTR_2g034440 33.438 320 199 6 11 328 22 329 1.59e-48 169
MS.gene66968.t1 MTR_4g114850 33.025 324 194 11 12 325 27 337 1.82e-48 170
MS.gene66968.t1 MTR_4g114850 33.025 324 194 11 12 325 27 337 2.57e-48 169
MS.gene66968.t1 MTR_3g080410 35.866 329 182 12 11 326 26 338 3.43e-48 169
MS.gene66968.t1 MTR_4g076440 31.692 325 203 8 8 331 20 326 5.02e-48 167
MS.gene66968.t1 MTR_4g084480 33.333 330 198 10 4 324 18 334 5.09e-48 169
MS.gene66968.t1 MTR_4g084480 33.333 330 198 10 4 324 25 341 5.53e-48 169
MS.gene66968.t1 MTR_4g114850 32.622 328 198 11 12 329 27 341 6.07e-48 169
MS.gene66968.t1 MTR_4g084480 33.333 330 198 10 4 324 25 341 7.80e-48 169
MS.gene66968.t1 MTR_8g012400 29.647 425 273 15 12 422 30 442 1.15e-47 170
MS.gene66968.t1 MTR_2g034470 32.609 322 203 6 11 330 30 339 1.28e-47 167
MS.gene66968.t1 MTR_2g034480 31.988 322 205 6 11 330 27 336 3.07e-47 166
MS.gene66968.t1 MTR_3g065460 30.189 424 262 18 11 420 24 427 4.31e-47 169
MS.gene66968.t1 MTR_1g052430 32.716 324 200 9 10 329 31 340 7.80e-47 166
MS.gene66968.t1 MTR_2g034470 33.553 304 188 6 29 330 13 304 7.89e-47 164
MS.gene66968.t1 MTR_7g081370 33.333 327 185 12 9 331 26 323 1.48e-45 161
MS.gene66968.t1 MTR_4g076500 32.822 326 198 10 9 329 76 385 3.62e-45 162
MS.gene66968.t1 MTR_4g083500 29.385 439 266 15 11 420 44 467 8.54e-45 164
MS.gene66968.t1 MTR_1g022160 29.083 447 268 16 11 421 24 457 1.21e-44 162
MS.gene66968.t1 MTR_1g022160 29.464 448 265 17 11 421 24 457 1.25e-44 162
MS.gene66968.t1 MTR_1g022160 29.306 447 267 16 11 421 24 457 1.70e-44 162
MS.gene66968.t1 MTR_8g102340 32.133 361 220 14 81 430 65 411 2.35e-44 161
MS.gene66968.t1 MTR_5g078200 29.167 432 260 16 11 422 23 428 2.38e-44 164
MS.gene66968.t1 MTR_4g052970 31.965 341 206 13 1 329 17 343 2.82e-43 156
MS.gene66968.t1 MTR_8g085720 28.837 430 271 17 11 425 26 435 3.07e-43 159
MS.gene66968.t1 MTR_4g132280 29.742 427 264 17 11 422 45 450 9.19e-43 158
MS.gene66968.t1 MTR_3g116510 35.016 317 184 13 121 425 1 307 1.71e-42 153
MS.gene66968.t1 MTR_2g019345 33.231 325 190 12 11 324 24 332 4.48e-42 154
MS.gene66968.t1 MTR_5g078200 28.878 419 252 16 24 422 3 395 5.21e-42 157
MS.gene66968.t1 MTR_3g083580 28.706 425 268 17 11 421 26 429 8.50e-42 155
MS.gene66968.t1 MTR_2g086530 29.794 339 212 11 11 339 8 330 6.24e-41 150
MS.gene66968.t1 MTR_2g086530 30.000 350 217 12 2 339 18 351 8.54e-41 150
MS.gene66968.t1 MTR_7g053500 27.273 429 281 18 12 422 27 442 8.13e-40 149
MS.gene66968.t1 MTR_1g022160 31.454 337 209 11 11 337 24 348 3.47e-38 143
MS.gene66968.t1 MTR_8g012400 29.494 356 226 14 80 422 19 362 2.55e-36 137
MS.gene66968.t1 MTR_7g053500 28.691 359 228 16 80 422 19 365 5.04e-32 126
MS.gene66968.t1 MTR_5g081720 29.073 313 192 14 27 329 56 348 3.78e-22 97.8
MS.gene66968.t1 MTR_4g036680 30.556 108 72 2 224 331 71 175 7.33e-13 68.2
MS.gene66968.t1 MTR_4g036775 30.556 108 72 2 224 331 71 175 3.21e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66968.t1 AT1G64760 73.976 415 104 4 8 422 22 432 0.0 624
MS.gene66968.t1 AT1G64760 73.976 415 104 4 8 422 22 432 0.0 624
MS.gene66968.t1 AT2G19440 73.253 415 107 4 8 422 18 428 0.0 620
MS.gene66968.t1 AT2G19440 73.253 415 107 4 8 422 18 428 0.0 620
MS.gene66968.t1 AT3G04010 68.990 416 124 5 8 422 30 441 0.0 587
MS.gene66968.t1 AT5G18220 68.496 419 122 5 8 422 27 439 0.0 585
MS.gene66968.t1 AT4G31140 57.447 423 170 5 2 422 18 432 2.21e-172 492
MS.gene66968.t1 AT3G24330 57.246 414 171 6 11 422 39 448 2.01e-168 483
MS.gene66968.t1 AT5G58090 57.039 412 169 5 11 420 22 427 4.52e-168 481
MS.gene66968.t1 AT5G64790 55.582 421 181 4 3 422 20 435 7.80e-161 463
MS.gene66968.t1 AT5G20870 54.419 430 178 7 1 420 20 441 8.03e-152 441
MS.gene66968.t1 AT4G17180 50.240 416 191 7 9 422 23 424 4.14e-140 410
MS.gene66968.t1 AT5G58480 44.231 416 221 5 8 422 23 428 7.41e-114 343
MS.gene66968.t1 AT5G55180 33.257 436 245 16 11 422 27 440 8.31e-62 207
MS.gene66968.t1 AT5G55180 33.257 436 245 16 11 422 27 440 9.52e-62 207
MS.gene66968.t1 AT2G05790 33.183 443 250 18 11 422 25 452 2.86e-60 204
MS.gene66968.t1 AT3G55430 33.410 437 250 20 3 422 21 433 6.86e-59 199
MS.gene66968.t1 AT2G16230 33.796 432 241 18 11 421 25 432 2.03e-57 197
MS.gene66968.t1 AT4G26830 31.718 454 265 17 1 432 15 445 2.13e-56 193
MS.gene66968.t1 AT4G26830 31.982 444 257 17 11 432 29 449 2.61e-56 193
MS.gene66968.t1 AT2G01630 30.986 426 260 18 11 422 23 428 1.09e-53 186
MS.gene66968.t1 AT2G01630 30.839 441 269 19 11 437 23 441 1.84e-53 186
MS.gene66968.t1 AT4G16260 34.043 329 199 9 9 334 22 335 2.64e-53 182
MS.gene66968.t1 AT5G24318 29.724 434 259 19 10 421 29 438 3.28e-53 185
MS.gene66968.t1 AT5G24318 29.724 434 259 19 10 421 29 438 4.84e-53 184
MS.gene66968.t1 AT2G39640 32.861 423 253 18 8 422 27 426 2.53e-52 184
MS.gene66968.t1 AT4G16260 34.286 315 190 8 22 334 7 306 2.78e-52 178
MS.gene66968.t1 AT1G66250 30.556 432 267 16 11 429 32 443 6.77e-52 182
MS.gene66968.t1 AT3G57270 35.093 322 193 9 11 329 27 335 1.38e-51 177
MS.gene66968.t1 AT5G56590 28.873 426 275 13 11 422 26 437 1.51e-51 181
MS.gene66968.t1 AT3G57260 33.333 333 199 11 1 329 21 334 3.98e-50 173
MS.gene66968.t1 AT3G57260 33.333 333 199 11 1 329 37 350 4.61e-50 174
MS.gene66968.t1 AT4G34480 32.311 424 255 16 11 421 26 430 5.78e-50 177
MS.gene66968.t1 AT3G23770 30.045 446 281 17 3 429 29 462 4.98e-49 174
MS.gene66968.t1 AT3G15800 33.234 334 199 12 3 325 35 355 6.94e-49 172
MS.gene66968.t1 AT3G07320 30.445 427 268 18 12 422 26 439 1.65e-48 172
MS.gene66968.t1 AT4G14080 30.303 429 269 17 11 422 42 457 4.94e-48 171
MS.gene66968.t1 AT4G18340 32.628 331 201 10 4 325 27 344 6.77e-47 166
MS.gene66968.t1 AT1G30080 32.831 332 197 11 4 324 29 345 9.10e-47 166
MS.gene66968.t1 AT1G30080 32.831 332 197 11 4 324 29 345 1.19e-46 166
MS.gene66968.t1 AT4G18340 32.628 331 201 10 4 325 27 344 1.62e-46 166
MS.gene66968.t1 AT1G32860 32.822 326 195 10 11 325 29 341 2.87e-46 166
MS.gene66968.t1 AT1G11820 29.274 427 266 17 11 422 44 449 5.94e-46 166
MS.gene66968.t1 AT1G11820 29.274 427 266 17 11 422 44 449 8.03e-46 166
MS.gene66968.t1 AT2G01630 31.940 335 205 12 11 334 23 345 1.17e-45 163
MS.gene66968.t1 AT3G13560 29.930 431 257 15 11 422 26 430 1.97e-45 165
MS.gene66968.t1 AT3G13560 29.930 431 257 15 11 422 26 430 1.97e-45 165
MS.gene66968.t1 AT3G13560 29.930 431 257 15 11 422 26 430 1.97e-45 165
MS.gene66968.t1 AT3G13560 29.930 431 257 15 11 422 26 430 1.97e-45 165
MS.gene66968.t1 AT3G13560 29.930 431 257 15 11 422 26 430 1.97e-45 165
MS.gene66968.t1 AT2G26600 29.972 357 225 12 7 351 30 373 3.75e-45 162
MS.gene66968.t1 AT3G57240 31.692 325 199 9 8 329 32 336 6.33e-45 160
MS.gene66968.t1 AT5G42720 34.769 325 188 13 11 324 26 337 2.23e-43 158
MS.gene66968.t1 AT4G34480 36.111 324 184 13 11 324 26 336 3.58e-43 155
MS.gene66968.t1 AT5G24318 31.307 329 202 13 10 329 29 342 7.72e-43 155
MS.gene66968.t1 AT4G29360 26.464 461 291 16 5 430 21 468 1.12e-42 158
MS.gene66968.t1 AT4G29360 26.464 461 291 16 5 430 31 478 1.20e-42 158
MS.gene66968.t1 AT5G42100 33.923 339 197 13 8 333 24 348 1.01e-41 153
MS.gene66968.t1 AT5G42100 33.923 339 197 13 8 333 24 348 1.30e-41 153
MS.gene66968.t1 AT3G61810 28.994 338 206 12 11 334 55 372 1.01e-40 149
MS.gene66968.t1 AT2G27500 30.211 331 208 11 9 329 27 344 1.36e-40 149
MS.gene66968.t1 AT2G27500 30.211 331 208 11 9 329 27 344 2.70e-40 149
MS.gene66968.t1 AT1G11820 29.532 342 220 10 11 342 44 374 1.20e-38 144
MS.gene66968.t1 AT1G77780 28.923 325 209 9 12 331 25 332 4.77e-38 142
MS.gene66968.t1 AT5G20390 30.488 328 204 11 11 331 33 343 3.06e-36 136
MS.gene66968.t1 AT4G34480 32.831 332 195 14 101 420 3 318 5.11e-36 137
MS.gene66968.t1 AT1G77790 30.671 313 192 11 25 329 44 339 4.54e-35 133
MS.gene66968.t1 AT5G20330 30.183 328 205 11 11 331 34 344 9.03e-34 130
MS.gene66968.t1 AT5G20340 29.653 317 200 10 11 321 43 342 1.06e-33 130
MS.gene66968.t1 AT1G33220 30.033 303 192 9 11 307 34 322 4.67e-33 127
MS.gene66968.t1 AT5G24318 29.154 319 185 14 124 421 1 299 5.89e-33 127
MS.gene66968.t1 AT2G26600 28.920 287 180 11 76 351 6 279 1.36e-30 120
MS.gene66968.t1 AT2G27500 30.108 279 172 11 61 329 1 266 3.22e-30 119
MS.gene66968.t1 AT3G55780 26.205 332 219 9 11 329 31 349 1.31e-29 119
MS.gene66968.t1 AT3G46570 27.711 332 209 13 11 329 27 340 2.55e-29 118
MS.gene66968.t1 AT5G20560 27.129 317 209 10 11 321 34 334 3.47e-28 114

Find 72 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATTGAAGTTTATTTATT+TGG 0.091611 6.4:-4040194 MS.gene66968:CDS
TTCATAAACATCAGCATTTA+AGG 0.121944 6.4:+4040637 None:intergenic
TGCAAGGTTGCTTAAATTAT+TGG 0.148615 6.4:+4039983 None:intergenic
GAAACATGCATGGGAAATTT+AGG 0.155283 6.4:+4040092 None:intergenic
CACCTAATCCAACTTGATTT+AGG 0.179677 6.4:+4040681 None:intergenic
GGATTAAACATGCACCATTT+TGG 0.186507 6.4:+4040011 None:intergenic
ATTTCAGCTAATTGATTATT+AGG 0.201538 6.4:+4042441 None:intergenic
TCAATGTAACCTTGTCTTCT+TGG 0.216980 6.4:+4040209 None:intergenic
TGGATCATCTTGCAACAATT+TGG 0.228531 6.4:-4039910 MS.gene66968:CDS
ACATGGTCAAAATAAATTAT+TGG 0.229515 6.4:-4040063 MS.gene66968:CDS
AACATTTGTACAACTGTATC+TGG 0.259099 6.4:+4042561 None:intergenic
AAATTCCATTGTCATTTATA+GGG 0.260086 6.4:+4040423 None:intergenic
AAAATTCCATTGTCATTTAT+AGG 0.268255 6.4:+4040422 None:intergenic
TTCCATCAGCTGGAATATTT+AGG 0.313567 6.4:-4040592 MS.gene66968:CDS
ACCTAATCCAACTTGATTTA+GGG 0.313740 6.4:+4040682 None:intergenic
CCTAGGCTTGCATCAAATAA+AGG 0.313854 6.4:-4040236 MS.gene66968:CDS
GGAAGGACTTGGTGTGAATT+GGG 0.317702 6.4:-4042610 MS.gene66968:CDS
TGCAACAATTTGGATGCTAA+TGG 0.318329 6.4:-4039900 MS.gene66968:CDS
TGGAAGGACTTGGTGTGAAT+TGG 0.327363 6.4:-4042611 MS.gene66968:CDS
TTGCTTAAATTATTGGCATT+TGG 0.329109 6.4:+4039990 None:intergenic
GATTGCACCCCACTTGGATA+TGG 0.332800 6.4:-4039930 MS.gene66968:CDS
GCATTGAAATCAATTGGATT+TGG 0.334676 6.4:-4040356 MS.gene66968:CDS
TGGATTAGGTGACTCAATTA+AGG 0.336092 6.4:-4040669 MS.gene66968:CDS
CTCAAAATTTCCTGGCTCAA+TGG 0.343066 6.4:+4040148 None:intergenic
GTCTCAGCATTGAAATCAAT+TGG 0.343874 6.4:-4040362 MS.gene66968:CDS
GTACAAATGTTGAAAGATAA+TGG 0.351290 6.4:-4042549 MS.gene66968:CDS
TGCATTATCTTGATCCAAAA+TGG 0.352525 6.4:-4040025 MS.gene66968:CDS
CAATGTCTCTCAAAATTTCC+TGG 0.367879 6.4:+4040140 None:intergenic
GGAACAGCATTGTTTGAATC+TGG 0.376124 6.4:+4040611 None:intergenic
ACTCGTTATAACTTCAAATC+TGG 0.376451 6.4:-4042375 MS.gene66968:CDS
GTCATAAGTTCACTTAAATC+AGG 0.389740 6.4:+4040569 None:intergenic
AACAATGCTGTTCCATCAGC+TGG 0.414573 6.4:-4040602 MS.gene66968:CDS
ATGAGTGCACTTGGTGGGTC+AGG 0.429886 6.4:-4042486 MS.gene66968:CDS
GCCCTAAATCAAGTTGGATT+AGG 0.441972 6.4:-4040683 MS.gene66968:CDS
TTATGATCGTGCTTTGCAAT+GGG 0.469916 6.4:-4042412 MS.gene66968:CDS
AATGCATTAAGATTCTATAA+TGG 0.474784 6.4:-4040266 MS.gene66968:CDS
GGCCTAAATATTCCAGCTGA+TGG 0.497077 6.4:+4040590 None:intergenic
CCTTTATTTGATGCAAGCCT+AGG 0.497501 6.4:+4040236 None:intergenic
TCATAAACATCAGCATTTAA+GGG 0.503342 6.4:+4040638 None:intergenic
ACAACTGTATCTGGTTTCAA+TGG 0.506632 6.4:+4042570 None:intergenic
CAAAATGCCCTAAATCAAGT+TGG 0.507329 6.4:-4040689 MS.gene66968:CDS
AATACGACGAAACGCCGTTA+CGG 0.507854 6.4:-4038410 MS.gene66968:CDS
TTTGCTGATTGCACCCCACT+TGG 0.508951 6.4:-4039936 MS.gene66968:CDS
TGATACAGGTATGTAGCAGT+TGG 0.511141 6.4:-4040782 MS.gene66968:intron
GTGTTTCGTCGCGGCCGTAA+CGG 0.512674 6.4:+4038396 None:intergenic
GGGTAAATGTTGACTGTGAA+TGG 0.513460 6.4:+4040512 None:intergenic
ATTATGATCGTGCTTTGCAA+TGG 0.517702 6.4:-4042413 MS.gene66968:CDS
GGTCAAAATAAATTATTGGT+TGG 0.518395 6.4:-4040059 MS.gene66968:CDS
CATAATTAATATTATCTGCA+AGG 0.534309 6.4:+4039967 None:intergenic
GCCGCGACGAAACACCGTTA+CGG 0.539194 6.4:-4038388 MS.gene66968:CDS
AATGTTCATTAGGGCAGGGA+AGG 0.547103 6.4:+4040712 None:intergenic
GATGCAAAATCCATTGAGCC+AGG 0.551835 6.4:-4040158 MS.gene66968:CDS
TGGGTCAGGTATTGAAGTAA+TGG 0.555721 6.4:-4042472 MS.gene66968:CDS
CGTTATAACTTCAAATCTGG+TGG 0.565387 6.4:-4042372 MS.gene66968:CDS
GAAGTAGGTTGGCCCACAGA+TGG 0.567464 6.4:-4040311 MS.gene66968:CDS
AAACTATGAGTGCACTTGGT+GGG 0.583255 6.4:-4042491 MS.gene66968:CDS
TCAAACCCTATAAATGACAA+TGG 0.600273 6.4:-4040428 MS.gene66968:CDS
GAAGGACTTGGTGTGAATTG+GGG 0.620435 6.4:-4042609 MS.gene66968:CDS
AAGATGATCCATATCCAAGT+GGG 0.621191 6.4:+4039922 None:intergenic
TCTATGTCTAATGTCATGAA+CGG 0.621575 6.4:+4038352 None:intergenic
ATGTTGATTTGAAACATGCA+TGG 0.636846 6.4:+4040082 None:intergenic
AGTGCAAGATCAGAATGACT+TGG 0.640166 6.4:-4039844 MS.gene66968:CDS
GCCGTAACGGTGTTTCGTCG+CGG 0.641271 6.4:+4038387 None:intergenic
GAAGAAACTATGAGTGCACT+TGG 0.642757 6.4:-4042495 MS.gene66968:CDS
TTTGAATGTTCATTAGGGCA+GGG 0.642889 6.4:+4040708 None:intergenic
TGTTGATTTGAAACATGCAT+GGG 0.655324 6.4:+4040083 None:intergenic
ATCAGCATTTAAGGGTACTG+TGG 0.661565 6.4:+4040646 None:intergenic
GAAACTATGAGTGCACTTGG+TGG 0.667838 6.4:-4042492 MS.gene66968:CDS
AAAGGTACACCAAGAAGACA+AGG 0.670968 6.4:-4040218 MS.gene66968:CDS
CAAGATGATCCATATCCAAG+TGG 0.675663 6.4:+4039921 None:intergenic
AGATGATCCATATCCAAGTG+GGG 0.711276 6.4:+4039923 None:intergenic
ATGCATGTTTCAAATCAACA+TGG 0.723172 6.4:-4040080 MS.gene66968:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATATACTAGTTAATA+TGG - chr6.4:4038951-4038970 MS.gene66968:intron 10.0%
!! TTTACAATTCATTATAATTA+GGG - chr6.4:4041685-4041704 MS.gene66968:intron 10.0%
!!! TTTTACAATTCATTATAATT+AGG - chr6.4:4041684-4041703 MS.gene66968:intron 10.0%
!! TACATTGAAGTTTATTTATT+TGG - chr6.4:4040804-4040823 MS.gene66968:intron 15.0%
!! TTTGAACAATAAACTAAAAT+TGG + chr6.4:4039235-4039254 None:intergenic 15.0%
!!! ATATTTTTAAGGTGAATAAA+CGG - chr6.4:4039769-4039788 MS.gene66968:intron 15.0%
!!! ATGTAGAATTTTATATACAT+AGG - chr6.4:4041799-4041818 MS.gene66968:intron 15.0%
!!! CTTTTTTTAATGTCAATTAT+TGG - chr6.4:4039028-4039047 MS.gene66968:intron 15.0%
!!! GACTAAAATTCATATTTTTA+AGG - chr6.4:4039758-4039777 MS.gene66968:intron 15.0%
!!! GTTTTTATTTTTAATTGTTG+TGG - chr6.4:4038705-4038724 MS.gene66968:intron 15.0%
!!! TCTGCATTTTTTTTTTTATA+TGG - chr6.4:4039409-4039428 MS.gene66968:intron 15.0%
!!! TCTTTAGCTTAAAAAAAAAA+CGG - chr6.4:4040018-4040037 MS.gene66968:CDS 15.0%
!! AAAAATAAACTGCGTAAAAT+TGG - chr6.4:4042198-4042217 MS.gene66968:intron 20.0%
!! AAAATAAACTGCGTAAAATT+GGG - chr6.4:4042199-4042218 MS.gene66968:intron 20.0%
!! AAACAAAACTAGATCTTAAT+TGG - chr6.4:4039613-4039632 MS.gene66968:intron 20.0%
!! AAATGATCGGTTATAATTAT+TGG - chr6.4:4039112-4039131 MS.gene66968:intron 20.0%
!! AAGAAGTCAAATGTATAAAA+CGG + chr6.4:4041502-4041521 None:intergenic 20.0%
!! AAGTTGTAATTACTAATGTA+TGG + chr6.4:4042297-4042316 None:intergenic 20.0%
!! AATAAAATTGGAGAATGATT+TGG + chr6.4:4041660-4041679 None:intergenic 20.0%
!! AATGCATTAAGATTCTATAA+TGG - chr6.4:4040732-4040751 MS.gene66968:CDS 20.0%
!! ACATGGTCAAAATAAATTAT+TGG - chr6.4:4040935-4040954 MS.gene66968:intron 20.0%
!! ATTTCAGCTAATTGATTATT+AGG + chr6.4:4038560-4038579 None:intergenic 20.0%
!! CAAAAAATGTCAAAACTATT+AGG - chr6.4:4038820-4038839 MS.gene66968:intron 20.0%
!! CATAATTAATATTATCTGCA+AGG + chr6.4:4041034-4041053 None:intergenic 20.0%
!! GAATATGATTCTATAAACTA+AGG - chr6.4:4039143-4039162 MS.gene66968:intron 20.0%
!! GTGTTTAGGAAATAAATAAT+TGG + chr6.4:4040165-4040184 None:intergenic 20.0%
!! TAAAACTGATAAGAAATGAT+CGG - chr6.4:4039099-4039118 MS.gene66968:intron 20.0%
!! TATCAATAATAGTGTAAAGA+TGG + chr6.4:4040201-4040220 None:intergenic 20.0%
!! TATGTAAAAATGGTGAAAAA+CGG + chr6.4:4042559-4042578 None:intergenic 20.0%
!! TGAATAATAAAATCACAAGT+AGG + chr6.4:4041230-4041249 None:intergenic 20.0%
!! TTCCATAAAGACTTAAAAAA+GGG + chr6.4:4040509-4040528 None:intergenic 20.0%
!! TTGTTGTATGATTTCAAAAA+TGG + chr6.4:4040249-4040268 None:intergenic 20.0%
!! TTTCCATAAAGACTTAAAAA+AGG + chr6.4:4040510-4040529 None:intergenic 20.0%
!!! AAAATTCCATTGTCATTTAT+AGG + chr6.4:4040579-4040598 None:intergenic 20.0%
!!! AAATTCCATTGTCATTTATA+GGG + chr6.4:4040578-4040597 None:intergenic 20.0%
!!! AGTTTTTGTTAGAATAGTTT+AGG - chr6.4:4039876-4039895 MS.gene66968:CDS 20.0%
!!! CATTTTTTTTTTTATATGGC+TGG - chr6.4:4039413-4039432 MS.gene66968:intron 20.0%
!!! GATTCTTTTTCTTTTTTTCT+TGG - chr6.4:4039539-4039558 MS.gene66968:intron 20.0%
!!! GTAAAATAGAGTTTTTTGTT+AGG + chr6.4:4042000-4042019 None:intergenic 20.0%
!!! GTTTTTGTTAGAATAGTTTA+GGG - chr6.4:4039877-4039896 MS.gene66968:CDS 20.0%
!!! TCATACTTTTAAACACAATT+TGG + chr6.4:4041853-4041872 None:intergenic 20.0%
!!! TCATCATATTTTTTTGTAAC+TGG - chr6.4:4039810-4039829 MS.gene66968:intron 20.0%
!!! TTAACTTCTAGTATGTTTTT+TGG - chr6.4:4039305-4039324 MS.gene66968:intron 20.0%
!!! TTTTACTTTCAGATTTTGTA+TGG - chr6.4:4042014-4042033 MS.gene66968:intron 20.0%
!!! TTTTGTTCACTATGTAAAAA+TGG + chr6.4:4042569-4042588 None:intergenic 20.0%
! AAATGTCAAAACTATTAGGT+CGG - chr6.4:4038824-4038843 MS.gene66968:intron 25.0%
! AACAAGAAAACAACAAATGA+AGG + chr6.4:4041284-4041303 None:intergenic 25.0%
! ACAAGAAAACAACAAATGAA+GGG + chr6.4:4041283-4041302 None:intergenic 25.0%
! AGGAAATCATACATTTCATA+TGG - chr6.4:4039163-4039182 MS.gene66968:intron 25.0%
! ATATCAGTAGCCATATAATT+AGG + chr6.4:4042426-4042445 None:intergenic 25.0%
! ATTACCAACAAAAAATATGC+AGG + chr6.4:4040068-4040087 None:intergenic 25.0%
! ATTTATTTGTGTGTGAATCA+GGG - chr6.4:4040090-4040109 MS.gene66968:CDS 25.0%
! CTTTACACTATTATTGATAC+AGG - chr6.4:4040202-4040221 MS.gene66968:CDS 25.0%
! GAATGCATAAATATGTGTTT+AGG + chr6.4:4040179-4040198 None:intergenic 25.0%
! GGTCAAAATAAATTATTGGT+TGG - chr6.4:4040939-4040958 MS.gene66968:intron 25.0%
! GTACAAATGTTGAAAGATAA+TGG - chr6.4:4038449-4038468 MS.gene66968:intron 25.0%
! TAAAAAAAAAACGGTGTGTT+GGG - chr6.4:4040027-4040046 MS.gene66968:CDS 25.0%
! TAACGAAATTATATGACAGT+AGG - chr6.4:4042261-4042280 MS.gene66968:intron 25.0%
! TATCAGTAGCCATATAATTA+GGG + chr6.4:4042425-4042444 None:intergenic 25.0%
! TATGATAATTCCAATACATG+TGG + chr6.4:4041551-4041570 None:intergenic 25.0%
! TATTTATTTGTGTGTGAATC+AGG - chr6.4:4040089-4040108 MS.gene66968:CDS 25.0%
! TCAAAAAATGCAAAGTCAAA+TGG + chr6.4:4040543-4040562 None:intergenic 25.0%
! TCATAAACATCAGCATTTAA+GGG + chr6.4:4040363-4040382 None:intergenic 25.0%
! TCGTAAAAAATCAAACCAAA+CGG + chr6.4:4039908-4039927 None:intergenic 25.0%
! TTAAAAAAAAAACGGTGTGT+TGG - chr6.4:4040026-4040045 MS.gene66968:CDS 25.0%
! TTAATGTCAATTATTGGACT+AGG - chr6.4:4039034-4039053 MS.gene66968:intron 25.0%
! TTATGTTTGAGTAGTTACTT+TGG - chr6.4:4039383-4039402 MS.gene66968:intron 25.0%
! TTCATAAACATCAGCATTTA+AGG + chr6.4:4040364-4040383 None:intergenic 25.0%
! TTGCTTAAATTATTGGCATT+TGG + chr6.4:4041011-4041030 None:intergenic 25.0%
! TTTGTAGTCATATGATTACA+GGG - chr6.4:4042137-4042156 MS.gene66968:intron 25.0%
!! AAATAACAAATGAAGAGTAC+AGG + chr6.4:4039988-4040007 None:intergenic 25.0%
!! AATAACAAATGAAGAGTACA+GGG + chr6.4:4039987-4040006 None:intergenic 25.0%
!! TAGAGCTATTAAACACATTT+TGG + chr6.4:4041965-4041984 None:intergenic 25.0%
!! TCAAAAAGATCAAAGCTTTT+AGG + chr6.4:4041742-4041761 None:intergenic 25.0%
!! TGCATATTCGAAATGTTTTT+AGG - chr6.4:4042385-4042404 MS.gene66968:CDS 25.0%
!!! GCATATTCGAAATGTTTTTA+GGG - chr6.4:4042386-4042405 MS.gene66968:CDS 25.0%
!!! TACCCTTTTTTAAGTCTTTA+TGG - chr6.4:4040504-4040523 MS.gene66968:CDS 25.0%
!!! TTTGACTTTGCATTTTTTGA+TGG - chr6.4:4040543-4040562 MS.gene66968:CDS 25.0%
AAAATCCCTCCCTAATTATA+TGG - chr6.4:4042413-4042432 MS.gene66968:CDS 30.0%
AACAAAAACTCACACATCAT+GGG + chr6.4:4039866-4039885 None:intergenic 30.0%
AACAAAGAAGAAGATGAAGA+AGG + chr6.4:4041260-4041279 None:intergenic 30.0%
AACATTTGTACAACTGTATC+TGG + chr6.4:4038440-4038459 None:intergenic 30.0%
ACAAAGAAGAAGATGAAGAA+GGG + chr6.4:4041259-4041278 None:intergenic 30.0%
ACAATTTGGATGCACATATT+TGG + chr6.4:4041839-4041858 None:intergenic 30.0%
ACCTAATCCAACTTGATTTA+GGG + chr6.4:4040319-4040338 None:intergenic 30.0%
ACTCGTTATAACTTCAAATC+TGG - chr6.4:4038623-4038642 MS.gene66968:intron 30.0%
ATGAGTTATTCGATCTTGAT+CGG + chr6.4:4039207-4039226 None:intergenic 30.0%
ATGCATGTTTCAAATCAACA+TGG - chr6.4:4040918-4040937 MS.gene66968:intron 30.0%
ATTAAATCTCTCGCATATGT+AGG - chr6.4:4041876-4041895 MS.gene66968:intron 30.0%
CAAAACTAGATCTTAATTGG+TGG - chr6.4:4039616-4039635 MS.gene66968:intron 30.0%
CTATTGTGATCTACAATTCA+TGG - chr6.4:4041522-4041541 MS.gene66968:intron 30.0%
CTTTGTAGTCATATGATTAC+AGG - chr6.4:4042136-4042155 MS.gene66968:intron 30.0%
GCATTGAAATCAATTGGATT+TGG - chr6.4:4040642-4040661 MS.gene66968:CDS 30.0%
GTCATAAGTTCACTTAAATC+AGG + chr6.4:4040432-4040451 None:intergenic 30.0%
GTTAACCAGTGCAATTATTT+GGG - chr6.4:4042108-4042127 MS.gene66968:intron 30.0%
TAACAAAAACTCACACATCA+TGG + chr6.4:4039867-4039886 None:intergenic 30.0%
TCAAACCCTATAAATGACAA+TGG - chr6.4:4040570-4040589 MS.gene66968:CDS 30.0%
TCTTCTTGTACACATGTTAT+AGG - chr6.4:4041345-4041364 MS.gene66968:intron 30.0%
TGCAAGGTTGCTTAAATTAT+TGG + chr6.4:4041018-4041037 None:intergenic 30.0%
TGCATTATCTTGATCCAAAA+TGG - chr6.4:4040973-4040992 MS.gene66968:intron 30.0%
TGTAAATGAGATCTTGTACT+TGG - chr6.4:4041396-4041415 MS.gene66968:intron 30.0%
TTAAATCTCTCGCATATGTA+GGG - chr6.4:4041877-4041896 MS.gene66968:intron 30.0%
TTGAAGTTCACACATATAAG+TGG + chr6.4:4038904-4038923 None:intergenic 30.0%
! GGCATTTTGAATGTTCATTA+GGG + chr6.4:4040298-4040317 None:intergenic 30.0%
! GGTAACATTCCAATTTTTGT+TGG - chr6.4:4040663-4040682 MS.gene66968:CDS 30.0%
! TAAACACATTTTGGATGCAA+CGG + chr6.4:4041956-4041975 None:intergenic 30.0%
! TCTATAATGGTCTTTTACCT+AGG - chr6.4:4040745-4040764 MS.gene66968:CDS 30.0%
! TTTATATTTCACTTGCTGGT+TGG - chr6.4:4038741-4038760 MS.gene66968:intron 30.0%
!! AAATGCTTTTTGTTCTGACA+TGG - chr6.4:4039444-4039463 MS.gene66968:intron 30.0%
!! AGGAAATTTTGAGAGACATT+GGG - chr6.4:4040860-4040879 MS.gene66968:intron 30.0%
!! ATCATACTGATTCTTCATGT+GGG - chr6.4:4041565-4041584 MS.gene66968:intron 30.0%
!! ATGTTGATTTGAAACATGCA+TGG + chr6.4:4040919-4040938 None:intergenic 30.0%
!! TATCATACTGATTCTTCATG+TGG - chr6.4:4041564-4041583 MS.gene66968:intron 30.0%
!! TGTTGATTTGAAACATGCAT+GGG + chr6.4:4040918-4040937 None:intergenic 30.0%
!!! ACAATTTTTTGGTATGTGGA+AGG - chr6.4:4038371-4038390 MS.gene66968:CDS 30.0%
!!! ATTCGAAATGTTTTTAGGGT+GGG - chr6.4:4042390-4042409 MS.gene66968:CDS 30.0%
!!! CTTGCCAAGGTTTTAAAAAA+AGG - chr6.4:4042500-4042519 MS.gene66968:CDS 30.0%
!!! GAGTACAATTTTTTGGTATG+TGG - chr6.4:4038367-4038386 MS.gene66968:CDS 30.0%
!!! TATTCGAAATGTTTTTAGGG+TGG - chr6.4:4042389-4042408 MS.gene66968:CDS 30.0%
!!! TGGGGAATTTTTAGTTTTGA+TGG - chr6.4:4040879-4040898 MS.gene66968:intron 30.0%
!!! TGGTTTTATATTTCACTTGC+TGG - chr6.4:4038737-4038756 MS.gene66968:intron 30.0%
AAGATGATCCATATCCAAGT+GGG + chr6.4:4041079-4041098 None:intergenic 35.0%
AATTGTTGTGGATGTGATCA+TGG - chr6.4:4038717-4038736 MS.gene66968:intron 35.0%
ACACTTACAGAGCTATGTAA+GGG + chr6.4:4042178-4042197 None:intergenic 35.0%
ACATATAAGTGGAAGGATCA+GGG + chr6.4:4038893-4038912 None:intergenic 35.0%
ACCTAACACAATAGCATCAA+AGG + chr6.4:4041320-4041339 None:intergenic 35.0%
ACCTTTGATGCTATTGTGTT+AGG - chr6.4:4041316-4041335 MS.gene66968:intron 35.0%
AGTAGCCATATAATTAGGGA+GGG + chr6.4:4042421-4042440 None:intergenic 35.0%
AGTTCACACATATAAGTGGA+AGG + chr6.4:4038900-4038919 None:intergenic 35.0%
ATTATGATCGTGCTTTGCAA+TGG - chr6.4:4038585-4038604 MS.gene66968:intron 35.0%
ATTGAACTCAGAGAGTGATA+TGG - chr6.4:4039340-4039359 MS.gene66968:intron 35.0%
CAAAATGCCCTAAATCAAGT+TGG - chr6.4:4040309-4040328 MS.gene66968:CDS 35.0%
CAATGTCTCTCAAAATTTCC+TGG + chr6.4:4040861-4040880 None:intergenic 35.0%
CACCTAATCCAACTTGATTT+AGG + chr6.4:4040320-4040339 None:intergenic 35.0%
CATCAAAATGAGCAAGTGAT+AGG - chr6.4:4042076-4042095 MS.gene66968:intron 35.0%
CCTACTTCTCCAACAAAAAT+TGG + chr6.4:4040675-4040694 None:intergenic 35.0%
CGTTATAACTTCAAATCTGG+TGG - chr6.4:4038626-4038645 MS.gene66968:intron 35.0%
GAAACATGCATGGGAAATTT+AGG + chr6.4:4040909-4040928 None:intergenic 35.0%
GGTTAACCAGTGCAATTATT+TGG - chr6.4:4042107-4042126 MS.gene66968:intron 35.0%
TACACTTACAGAGCTATGTA+AGG + chr6.4:4042179-4042198 None:intergenic 35.0%
TCAATGTAACCTTGTCTTCT+TGG + chr6.4:4040792-4040811 None:intergenic 35.0%
TCGATAAGTATCAAGTAGTC+CGG - chr6.4:4042448-4042467 MS.gene66968:CDS 35.0%
TGCAACAATTTGGATGCTAA+TGG - chr6.4:4041098-4041117 MS.gene66968:intron 35.0%
TGGATCATCTTGCAACAATT+TGG - chr6.4:4041088-4041107 MS.gene66968:intron 35.0%
TTATGATCGTGCTTTGCAAT+GGG - chr6.4:4038586-4038605 MS.gene66968:intron 35.0%
TTCCATCAGCTGGAATATTT+AGG - chr6.4:4040406-4040425 MS.gene66968:CDS 35.0%
TTTGAATGTTCATTAGGGCA+GGG + chr6.4:4040293-4040312 None:intergenic 35.0%
! ACAACTGTATCTGGTTTCAA+TGG + chr6.4:4038431-4038450 None:intergenic 35.0%
! CAGAGAGTGATATGGAATTT+TGG - chr6.4:4039348-4039367 MS.gene66968:intron 35.0%
! CCAATTTTTGTTGGAGAAGT+AGG - chr6.4:4040672-4040691 MS.gene66968:CDS 35.0%
! GGATTAAACATGCACCATTT+TGG + chr6.4:4040990-4041009 None:intergenic 35.0%
! GGGCATTTTGAATGTTCATT+AGG + chr6.4:4040299-4040318 None:intergenic 35.0%
! GTCTCAGCATTGAAATCAAT+TGG - chr6.4:4040636-4040655 MS.gene66968:CDS 35.0%
! TGATCTTTTTGACCAGTTGT+GGG - chr6.4:4041750-4041769 MS.gene66968:intron 35.0%
! TGGATTAGGTGACTCAATTA+AGG - chr6.4:4040329-4040348 MS.gene66968:CDS 35.0%
! TTGATCTTTTTGACCAGTTG+TGG - chr6.4:4041749-4041768 MS.gene66968:intron 35.0%
! TTTACGACGTATTCCCATTT+TGG - chr6.4:4039921-4039940 MS.gene66968:CDS 35.0%
! TTTTGAATGTTCATTAGGGC+AGG + chr6.4:4040294-4040313 None:intergenic 35.0%
! TTTTTGTTGGAGAAGTAGGT+TGG - chr6.4:4040676-4040695 MS.gene66968:CDS 35.0%
!! AATAATTGCACTGGTTAACC+TGG + chr6.4:4042107-4042126 None:intergenic 35.0%
!! CAGGAAATTTTGAGAGACAT+TGG - chr6.4:4040859-4040878 MS.gene66968:intron 35.0%
!! GAACAAAAAGCATTTGCCAT+TGG + chr6.4:4039439-4039458 None:intergenic 35.0%
!! GGAAATTTTGAGAGACATTG+GGG - chr6.4:4040861-4040880 MS.gene66968:intron 35.0%
!! TCATGAACGGCATATTTTTG+CGG + chr6.4:4042636-4042655 None:intergenic 35.0%
!!! ACTTGGCTTGCAATTTTGAA+GGG - chr6.4:4041171-4041190 MS.gene66968:intron 35.0%
!!! AGCTCCTGCATATTTTTTGT+TGG - chr6.4:4040061-4040080 MS.gene66968:CDS 35.0%
!!! CGGACCTTTTTTTAAAACCT+TGG + chr6.4:4042507-4042526 None:intergenic 35.0%
!!! TTTTTTATATGGCTGGCCAA+TGG - chr6.4:4039420-4039439 MS.gene66968:intron 35.0%
AAACTATGAGTGCACTTGGT+GGG - chr6.4:4038507-4038526 MS.gene66968:intron 40.0%
ACCAGTGCAATTATTTGGGT+TGG - chr6.4:4042112-4042131 MS.gene66968:intron 40.0%
ACCCAGGTACAATCCAAAAT+GGG + chr6.4:4039937-4039956 None:intergenic 40.0%
AGATGATCCATATCCAAGTG+GGG + chr6.4:4041078-4041097 None:intergenic 40.0%
AGTGCAAGATCAGAATGACT+TGG - chr6.4:4041154-4041173 MS.gene66968:intron 40.0%
ATTAGGGTCTTGACTTTCCA+AGG - chr6.4:4041701-4041720 MS.gene66968:intron 40.0%
CAAAAAATATGCAGGAGCTG+AGG + chr6.4:4040060-4040079 None:intergenic 40.0%
CAAGATGATCCATATCCAAG+TGG + chr6.4:4041080-4041099 None:intergenic 40.0%
CACATATAAGTGGAAGGATC+AGG + chr6.4:4038894-4038913 None:intergenic 40.0%
CACTTACAGAGCTATGTAAG+GGG + chr6.4:4042177-4042196 None:intergenic 40.0%
CAGTAGCCATATAATTAGGG+AGG + chr6.4:4042422-4042441 None:intergenic 40.0%
CCTAGGCTTGCATCAAATAA+AGG - chr6.4:4040762-4040781 MS.gene66968:CDS 40.0%
CTCAAAATTTCCTGGCTCAA+TGG + chr6.4:4040853-4040872 None:intergenic 40.0%
GAAGAAACTATGAGTGCACT+TGG - chr6.4:4038503-4038522 MS.gene66968:intron 40.0%
GCTTTATGTGCCTCTCATTT+GGG + chr6.4:4042479-4042498 None:intergenic 40.0%
GGAACAGCATTGTTTGAATC+TGG + chr6.4:4040390-4040409 None:intergenic 40.0%
GTTATTCGATCTTGATCGGA+CGG + chr6.4:4039203-4039222 None:intergenic 40.0%
TCACGTGACTGAAATGTCAT+GGG + chr6.4:4041925-4041944 None:intergenic 40.0%
TGAGATCTTGTACTTGGAGA+TGG - chr6.4:4041402-4041421 MS.gene66968:intron 40.0%
TGATACAGGTATGTAGCAGT+TGG - chr6.4:4040216-4040235 MS.gene66968:CDS 40.0%
TTACCGAGAAAAAGACGTAG+CGG - chr6.4:4042527-4042546 MS.gene66968:CDS 40.0%
TTCATGGTCTCCACATGTAT+TGG - chr6.4:4041538-4041557 MS.gene66968:intron 40.0%
! AAAGGTACACCAAGAAGACA+AGG - chr6.4:4040780-4040799 MS.gene66968:intron 40.0%
! AGCTTTATGTGCCTCTCATT+TGG + chr6.4:4042480-4042499 None:intergenic 40.0%
! ATTTTGGATTGTACCTGGGT+CGG - chr6.4:4039937-4039956 MS.gene66968:CDS 40.0%
! CCAGTGCAATTATTTGGGTT+GGG - chr6.4:4042113-4042132 MS.gene66968:intron 40.0%
! CCTTTATTTGATGCAAGCCT+AGG + chr6.4:4040765-4040784 None:intergenic 40.0%
! CTACGTCTTTTTCTCGGTAA+CGG + chr6.4:4042527-4042546 None:intergenic 40.0%
! GCATTTTTGTCACCATCTGT+GGG + chr6.4:4040702-4040721 None:intergenic 40.0%
! GCTTTTTGTTCTGACATGGA+CGG - chr6.4:4039448-4039467 MS.gene66968:intron 40.0%
! GGGTAAATGTTGACTGTGAA+TGG + chr6.4:4040489-4040508 None:intergenic 40.0%
! TCCCATTTTGGATTGTACCT+GGG - chr6.4:4039933-4039952 MS.gene66968:CDS 40.0%
! TGCATTTTTGTCACCATCTG+TGG + chr6.4:4040703-4040722 None:intergenic 40.0%
! TTCCCATTTTGGATTGTACC+TGG - chr6.4:4039932-4039951 MS.gene66968:CDS 40.0%
! TTTTGGTATGTGGAAGGACT+TGG - chr6.4:4038377-4038396 MS.gene66968:CDS 40.0%
!! ATCAGCATTTAAGGGTACTG+TGG + chr6.4:4040355-4040374 None:intergenic 40.0%
!! GCCCTAAATCAAGTTGGATT+AGG - chr6.4:4040315-4040334 MS.gene66968:CDS 40.0%
!! TGGGTCAGGTATTGAAGTAA+TGG - chr6.4:4038526-4038545 MS.gene66968:intron 40.0%
!!! GACTTGGCTTGCAATTTTGA+AGG - chr6.4:4041170-4041189 MS.gene66968:intron 40.0%
AACAATGCTGTTCCATCAGC+TGG - chr6.4:4040396-4040415 MS.gene66968:CDS 45.0%
AATACGACGAAACGCCGTTA+CGG - chr6.4:4042588-4042607 MS.gene66968:CDS 45.0%
AATGTTCATTAGGGCAGGGA+AGG + chr6.4:4040289-4040308 None:intergenic 45.0%
AGAGTACAGGGAGAGAGATT+GGG + chr6.4:4039975-4039994 None:intergenic 45.0%
CCCAACCCAAATAATTGCAC+TGG + chr6.4:4042116-4042135 None:intergenic 45.0%
GAAACTATGAGTGCACTTGG+TGG - chr6.4:4038506-4038525 MS.gene66968:intron 45.0%
GACCCAGGTACAATCCAAAA+TGG + chr6.4:4039938-4039957 None:intergenic 45.0%
GATGCAAAATCCATTGAGCC+AGG - chr6.4:4040840-4040859 MS.gene66968:intron 45.0%
GGCCTAAATATTCCAGCTGA+TGG + chr6.4:4040411-4040430 None:intergenic 45.0%
GTCACGTGACTGAAATGTCA+TGG + chr6.4:4041926-4041945 None:intergenic 45.0%
TATGTGCCTCTCATTTGGGT+CGG + chr6.4:4042475-4042494 None:intergenic 45.0%
TCAGAGTTTAGTCCCACAAC+TGG + chr6.4:4041765-4041784 None:intergenic 45.0%
TCTTGTACTTGGAGATGGTG+TGG - chr6.4:4041407-4041426 MS.gene66968:intron 45.0%
TGACTTTCCAAGGACACTCT+AGG - chr6.4:4041711-4041730 MS.gene66968:intron 45.0%
! AAGAGTACAGGGAGAGAGAT+TGG + chr6.4:4039976-4039995 None:intergenic 45.0%
! ATCGGACGGTTGATATCATG+TGG + chr6.4:4039189-4039208 None:intergenic 45.0%
! GGAATAACCTAGAGTGTCCT+TGG + chr6.4:4041721-4041740 None:intergenic 45.0%
! TAGTTTAGGGCTACACCGTT+TGG - chr6.4:4039890-4039909 MS.gene66968:CDS 45.0%
! TTTTGGATTGTACCTGGGTC+GGG - chr6.4:4039938-4039957 MS.gene66968:CDS 45.0%
!! GAAGGACTTGGTGTGAATTG+GGG - chr6.4:4038389-4038408 MS.gene66968:CDS 45.0%
!! GCATATTTTTGCGGCCGTAA+CGG + chr6.4:4042627-4042646 None:intergenic 45.0%
!! GGAAGGACTTGGTGTGAATT+GGG - chr6.4:4038388-4038407 MS.gene66968:CDS 45.0%
!! TGGAAGGACTTGGTGTGAAT+TGG - chr6.4:4038387-4038406 MS.gene66968:CDS 45.0%
!! TTGTAAAAATAAAATAAAAT+TGG + chr6.4:4041672-4041691 None:intergenic 5.0%
AACCCAACAAGCCTGCATAC+AGG + chr6.4:4039843-4039862 None:intergenic 50.0%
ACTTCCGACCTTCTCGATCA+CGG + chr6.4:4038853-4038872 None:intergenic 50.0%
AGAAGGTCGGAAGTCGTGAT+CGG - chr6.4:4038859-4038878 MS.gene66968:intron 50.0%
AGCAAGTGATAGGTGTGACC+AGG - chr6.4:4042086-4042105 MS.gene66968:intron 50.0%
AGTACAGGGAGAGAGATTGG+GGG + chr6.4:4039973-4039992 None:intergenic 50.0%
GAGTACAGGGAGAGAGATTG+GGG + chr6.4:4039974-4039993 None:intergenic 50.0%
GATTGCACCCCACTTGGATA+TGG - chr6.4:4041068-4041087 MS.gene66968:intron 50.0%
GGCACATAAAGCTCTTGCCA+AGG - chr6.4:4042487-4042506 MS.gene66968:CDS 50.0%
! CGTCCGCTACGTCTTTTTCT+CGG + chr6.4:4042533-4042552 None:intergenic 50.0%
! TGCCTGTATGCAGGCTTGTT+GGG - chr6.4:4039838-4039857 MS.gene66968:CDS 50.0%
! TTTGCTGATTGCACCCCACT+TGG - chr6.4:4041062-4041081 MS.gene66968:intron 50.0%
CTGGTTTCGTGCCTGTATGC+AGG - chr6.4:4039829-4039848 MS.gene66968:CDS 55.0%
GAAGCCGTGATCGAGAAGGT+CGG - chr6.4:4038846-4038865 MS.gene66968:intron 55.0%
GAAGGTCGGAAGTCGTGATC+GGG - chr6.4:4038860-4038879 MS.gene66968:intron 55.0%
GTACAGGGAGAGAGATTGGG+GGG + chr6.4:4039972-4039991 None:intergenic 55.0%
GTGCCTGTATGCAGGCTTGT+TGG - chr6.4:4039837-4039856 MS.gene66968:CDS 55.0%
! ATGAGTGCACTTGGTGGGTC+AGG - chr6.4:4038512-4038531 MS.gene66968:intron 55.0%
! GAAGTAGGTTGGCCCACAGA+TGG - chr6.4:4040687-4040706 MS.gene66968:CDS 55.0%
GCCGCGACGAAACACCGTTA+CGG - chr6.4:4042610-4042629 MS.gene66968:CDS 60.0%
GCCGTAACGGTGTTTCGTCG+CGG + chr6.4:4042614-4042633 None:intergenic 60.0%
GCCTCTCATTTGGGTCGGAC+CGG + chr6.4:4042470-4042489 None:intergenic 60.0%
GTCGGAAGCCGTGATCGAGA+AGG - chr6.4:4038842-4038861 MS.gene66968:intron 60.0%
GTGTTTCGTCGCGGCCGTAA+CGG + chr6.4:4042605-4042624 None:intergenic 60.0%
TCCGGTCCGACCCAAATGAG+AGG - chr6.4:4042466-4042485 MS.gene66968:CDS 60.0%
GGGGACATTAGACCCGACCC+AGG + chr6.4:4039953-4039972 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 4038365 4042655 4038365 ID=MS.gene66968
chr6.4 mRNA 4038365 4042655 4038365 ID=MS.gene66968.t1;Parent=MS.gene66968
chr6.4 exon 4042360 4042655 4042360 ID=MS.gene66968.t1.exon1;Parent=MS.gene66968.t1
chr6.4 CDS 4042360 4042655 4042360 ID=cds.MS.gene66968.t1;Parent=MS.gene66968.t1
chr6.4 exon 4039828 4040796 4039828 ID=MS.gene66968.t1.exon2;Parent=MS.gene66968.t1
chr6.4 CDS 4039828 4040796 4039828 ID=cds.MS.gene66968.t1;Parent=MS.gene66968.t1
chr6.4 exon 4038365 4038440 4038365 ID=MS.gene66968.t1.exon3;Parent=MS.gene66968.t1
chr6.4 CDS 4038365 4038440 4038365 ID=cds.MS.gene66968.t1;Parent=MS.gene66968.t1
Gene Sequence

>MS.gene66968

ATGAGTACAATTTTTTGGTATGTGGAAGGACTTGGTGTGAATTGGGGAACACAAGCAACACATCCATTGAAACCAGATACAGTTGTACAAATGTTGAAAGATAATGGAATTGAAAAAGTGAAGTTATTTGATGCTGATGAAGAAACTATGAGTGCACTTGGTGGGTCAGGTATTGAAGTAATGGTTGCTATTCCTAATAATCAATTAGCTGAAATGAGTTATTATGATCGTGCTTTGCAATGGGTTAGAAAGAATGTTACTCGTTATAACTTCAAATCTGGTGGAGTAAATATCAAGTAAGTTTGTTTAATTTTACATTATGATTTTTTTTTATTGTATAGTTTTTATTTTTAATTGTTGTGGATGTGATCATGGTTTTATATTTCACTTGCTGGTTGGATTTTGTAATTCTTGATATTATAAAAAATTATGTCTACAAATTCTAGCTCAATATGCAAAAAATGTCAAAACTATTAGGTCGGAAGCCGTGATCGAGAAGGTCGGAAGTCGTGATCGGGATTTGAACCCTGATCCTTCCACTTATATGTGTGAACTTCAAATAACATCAAAAAAAAATATTATGAACAAAATATATACTAGTTAATATGGAAAACTAGTTGAAATGTTAGTTGTGTGAAATATTGTATTTTGTTTTTTGAGTGACTTTTTTTAATGTCAATTATTGGACTAGGTTCTAGTATTAAGTGAAAGTGACTCAATGAATACTTTTCTCATAAAACTGATAAGAAATGATCGGTTATAATTATTGGAAAAAGTTGAATATGATTCTATAAACTAAGGAAATCATACATTTCATATGGCCACATGATATCAACCGTCCGATCAAGATCGAATAACTCATGTCGTCCAATTTTAGTTTATTGTTCAAATTGATGATTGTATGATTAATATGATATTTTGATAGTCTTTTATTTTTCTATTAACTTCTAGTATGTTTTTTGGTTTTTTCTCTAAATTGAACTCAGAGAGTGATATGGAATTTTGGAATTATATATATTTATGTTTGAGTAGTTACTTTGGATCTCTGCATTTTTTTTTTTATATGGCTGGCCAATGGCAAATGCTTTTTGTTCTGACATGGACGGTGATCACATAAGATAAAAATATAAAATATGAAGAAGAAACTTAGCAAAGTGTACAATTTCTGAAGTTAGATTCTTTTTCTTTTTTTCTTGGTACTTGTATTTGTTGTGTCTCTTTTGAGTTGTTCAAGTATTTCTTTAATAAAAACAAAACTAGATCTTAATTGGTGGACTCAACTCAACTATATTCTCAAGTACTTTATATTTTGAATAAAAATCATTTGTATATGATGAGATTTTTAAATAATTTTATGTACTTAAATGAGTTTTTCTATGTCAAATAGTCTATCGACTAAAATTCATATTTTTAAGGTGAATAAACGGTTTTTTACAGACGTTCGTTCATCATATTTTTTTGTAACTGGTTTCGTGCCTGTATGCAGGCTTGTTGGGTTCCCATGATGTGTGAGTTTTTGTTAGAATAGTTTAGGGCTACACCGTTTGGTTTGATTTTTTACGACGTATTCCCATTTTGGATTGTACCTGGGTCGGGTCTAATGTCCCCCCAATCTCTCTCCCTGTACTCTTCATTTGTTATTTATTATATTTTTCTTTAGCTTAAAAAAAAAACGGTGTGTTGGGATTTGAACCTCAGCTCCTGCATATTTTTTGTTGGTAATTTATTTATTTGTGTGTGAATCAGGGAGAAATTTGAAACTATATATTATGATTTTCATATGAATTTTGCTTTCATCCAATTATTTATTTCCTAAACACATATTTATGCATTCCATCTTTACACTATTATTGATACAGGTATGTAGCAGTTGGAAATGAGCCATTTTTGAAATCATACAACAATTCATTCTTGAATGTAACCTTCCCTGCCCTAATGAACATTCAAAATGCCCTAAATCAAGTTGGATTAGGTGACTCAATTAAGGCCACAGTACCCTTAAATGCTGATGTTTATGAATCTCCAGATTCAAACAATGCTGTTCCATCAGCTGGAATATTTAGGCCTGATTTAAGTGAACTTATGACACAAATAGTTCAATTTTTGAGCAAAAATAATGCACCATTCACAGTCAACATTTACCCTTTTTTAAGTCTTTATGGAAATGACAATTTTCCATTTGACTTTGCATTTTTTGATGGAGTATCAAACCCTATAAATGACAATGGAATTTTGTACACAAATGTTTTTGATGCAAATTTTGATACTTTAGTCTCAGCATTGAAATCAATTGGATTTGGTAACATTCCAATTTTTGTTGGAGAAGTAGGTTGGCCCACAGATGGTGACAAAAATGCAAATATTCAAAATGCATTAAGATTCTATAATGGTCTTTTACCTAGGCTTGCATCAAATAAAGGTACACCAAGAAGACAAGGTTACATTGAAGTTTATTTATTTGGATTAATTGATGAAGATGCAAAATCCATTGAGCCAGGAAATTTTGAGAGACATTGGGGAATTTTTAGTTTTGATGGTAAACCTAAATTTCCCATGCATGTTTCAAATCAACATGGTCAAAATAAATTATTGGTTGGTGCAAAAGATGTGCATTATCTTGATCCAAAATGGTGCATGTTTAATCCAAATGCCAATAATTTAAGCAACCTTGCAGATAATATTAATTATGCTTGCAGTTTTGCTGATTGCACCCCACTTGGATATGGATCATCTTGCAACAATTTGGATGCTAATGGAAATGCTTCATATGCATTTAATATGTATTATCAAGTGCAAGATCAGAATGACTTGGCTTGCAATTTTGAAGGGTTAGCTATGATTACAACAAATAATATTTCAACTCCTACTTGTGATTTTATTATTCAGATTAACCCTTCTTCATCTTCTTCTTTGTTCCCTTCATTTGTTGTTTTCTTGTTTTCTAGTATACTACCTTTGATGCTATTGTGTTAGGTTAATTTCTTCTTGTACACATGTTATAGGTGATGTTTGTGACTAATATTTAAATATATGTAAATGAGATCTTGTACTTGGAGATGGTGTGGAAGATATAGTTTTGAATATTCATTTAATATATAGTTTGTAGACTTGAATATATTATTTTGAAGATTTGTCCGTTTTATACATTTGACTTCTTCTATTGTGATCTACAATTCATGGTCTCCACATGTATTGGAATTATCATACTGATTCTTCATGTGGGATCTGTATTTGACATTTATTATGACAGCACTACATCATTCATCTTCTATTCTATTATAAAAAAATAATACCAAATCATTCTCCAATTTTATTTTATTTTTACAATTCATTATAATTAGGGTCTTGACTTTCCAAGGACACTCTAGGTTATTCCTAAAAGCTTTGATCTTTTTGACCAGTTGTGGGACTAAACTCTGAGTCATCAATAAGACATGTAGAATTTTATATACATAGGTTAGACTAAATCTTCCAAATATGTGCATCCAAATTGTGTTTAAAAGTATGATGTATTAAATCTCTCGCATATGTAGGGTCTAGAAAGAAGTCGATTTGAACCCATGACATTTCAGTCACGTGACAACTTTACCGTTGCATCCAAAATGTGTTTAATAGCTCTATTTTAGCATCATCCTAACAAAAAACTCTATTTTACTTTCAGATTTTGTATGGCTTTGCTTGTTTTTCTACTTCACTAATTTTGAACTGTGTCATCAAAATGAGCAAGTGATAGGTGTGACCAGGTTAACCAGTGCAATTATTTGGGTTGGGCTTTGTAGTCATATGATTACAGGGAACAACTTTTCTCACCCCTTACATAGCTCTGTAAGTGTAAAAATAAACTGCGTAAAATTGGGTTTTTTTAATGAGCATTGCTATACAGTAAGAAAAGATTTTAACGAAATTATATGACAGTAGGAAAACACTTGCCATACATTAGTAATTACAACTTTACATTAGTGTAATTCTTGCTTTTCGTTGATTTATTTTTGTAACACACAGCATTAGTCTTTTTTAATATGCATATTCGAAATGTTTTTAGGGTGGGAAAATCCCTCCCTAATTATATGGCTACTGATATGATCGATAAGTATCAAGTAGTCCGGTCCGACCCAAATGAGAGGCACATAAAGCTCTTGCCAAGGTTTTAAAAAAAGGTCCGTTACCGAGAAAAAGACGTAGCGGACGTTACCGTTTTTCACCATTTTTACATAGTGAACAAAAATACGACGAAACGCCGTTACGGCCGCGACGAAACACCGTTACGGCCGCAAAAATATGCCGTTCATGA
Protein sequence

>MS.gene66968.t1

MSTIFWYVEGLGVNWGTQATHPLKPDTVVQMLKDNGIEKVKLFDADEETMSALGGSGIEVMVAIPNNQLAEMSYYDRALQWVRKNVTRYNFKSGGVNIKYVAVGNEPFLKSYNNSFLNVTFPALMNIQNALNQVGLGDSIKATVPLNADVYESPDSNNAVPSAGIFRPDLSELMTQIVQFLSKNNAPFTVNIYPFLSLYGNDNFPFDFAFFDGVSNPINDNGILYTNVFDANFDTLVSALKSIGFGNIPIFVGEVGWPTDGDKNANIQNALRFYNGLLPRLASNKGTPRRQGYIEVYLFGLIDEDAKSIEPGNFERHWGIFSFDGKPKFPMHVSNQHGQNKLLVGAKDVHYLDPKWCMFNPNANNLSNLADNINYACSFADCTPLGYGSSCNNLDANGNASYAFNMYYQVQDQNDLACNFEGEQKYDETPLRPRRNTVTAAKICRS