Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66971.t1 | XP_013451577.1 | 96.5 | 601 | 17 | 1 | 1 | 597 | 1 | 601 | 0.00E+00 | 1118.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66971.t1 | Q5XVI1 | 60.1 | 486 | 168 | 10 | 1 | 474 | 1 | 472 | 7.1e-139 | 495.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66971.t1 | A0A072UIF3 | 96.5 | 601 | 17 | 1 | 1 | 597 | 1 | 601 | 0.0e+00 | 1118.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene66971 | 0.805424 | 1.34E-49 | -1.69E-46 |
| MS.gene051263 | MS.gene66971 | 0.811058 | 8.46E-51 | -1.69E-46 |
| MS.gene051478 | MS.gene66971 | 0.807973 | 3.89E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene66971 | 0.806667 | 7.36E-50 | -1.69E-46 |
| MS.gene056169 | MS.gene66971 | 0.847166 | 1.37E-59 | -1.69E-46 |
| MS.gene056228 | MS.gene66971 | 0.834283 | 3.28E-56 | -1.69E-46 |
| MS.gene058197 | MS.gene66971 | 0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene058198 | MS.gene66971 | 0.805834 | 1.10E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene66971 | 0.819569 | 1.08E-52 | -1.69E-46 |
| MS.gene06057 | MS.gene66971 | 0.806763 | 7.02E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66971.t1 | MTR_6g032885 | 96.506 | 601 | 17 | 1 | 1 | 597 | 1 | 601 | 0.0 | 1199 |
| MS.gene66971.t1 | MTR_0495s0010 | 98.795 | 83 | 1 | 0 | 1 | 83 | 1 | 83 | 1.31e-50 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66971.t1 | AT1G54385 | 60.532 | 489 | 161 | 13 | 1 | 474 | 1 | 472 | 0.0 | 533 |
| MS.gene66971.t1 | AT1G54385 | 60.532 | 489 | 161 | 13 | 1 | 474 | 1 | 472 | 0.0 | 533 |
| MS.gene66971.t1 | AT1G54385 | 60.532 | 489 | 161 | 13 | 1 | 474 | 1 | 472 | 0.0 | 533 |
| MS.gene66971.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.99e-110 | 342 |
| MS.gene66971.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.99e-110 | 342 |
| MS.gene66971.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.99e-110 | 342 |
| MS.gene66971.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.99e-110 | 342 |
| MS.gene66971.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.99e-110 | 342 |
| MS.gene66971.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.99e-110 | 342 |
Find 128 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGTTGATTCGGATAAT+TGG | 0.194402 | 6.4:-4009904 | MS.gene66971:CDS |
| CAATGGCCACACCTTTAATT+TGG | 0.198465 | 6.4:-4008346 | MS.gene66971:CDS |
| AAAATCTCTTCCACTAAAAT+TGG | 0.218674 | 6.4:+4009445 | None:intergenic |
| AGGACTTGTGTTGGTACTTT+TGG | 0.218910 | 6.4:+4009094 | None:intergenic |
| TTTGTCATTCGCAACTTTCT+TGG | 0.220506 | 6.4:+4009508 | None:intergenic |
| CTTCTGATGAAATGGTTAAT+AGG | 0.231433 | 6.4:-4009874 | MS.gene66971:CDS |
| TGACTGTTGAGCCAAATTAA+AGG | 0.253297 | 6.4:+4008335 | None:intergenic |
| TATTCCATGTCTAGGACTTC+TGG | 0.253597 | 6.4:+4009118 | None:intergenic |
| CTCGAATACTTCCATGGATA+TGG | 0.283301 | 6.4:-4009353 | MS.gene66971:CDS |
| CGTGATTTGCTAAACCATTC+TGG | 0.288816 | 6.4:+4008594 | None:intergenic |
| TTCTGATGAAATGGTTAATA+GGG | 0.294905 | 6.4:-4009873 | MS.gene66971:CDS |
| AGAGAGCGAATGAGCCTCTT+TGG | 0.302508 | 6.4:+4008728 | None:intergenic |
| AAAATCTTATGTGAAAGATT+TGG | 0.307204 | 6.4:-4010290 | MS.gene66971:CDS |
| GAAGTTCTTGCTAGGGTTCA+TGG | 0.313252 | 6.4:-4010178 | MS.gene66971:CDS |
| AAGCTTTGGAGCCTTGAAAA+TGG | 0.313399 | 6.4:-4009254 | MS.gene66971:CDS |
| TGACTCGCTCACGAGTTCTT+TGG | 0.313902 | 6.4:-4009963 | MS.gene66971:CDS |
| CGAAGCTAAAGTCTGAATTA+TGG | 0.319489 | 6.4:+4010117 | None:intergenic |
| TGGTGCAGCTCTTTGCTTGA+AGG | 0.321042 | 6.4:-4009927 | MS.gene66971:CDS |
| ATGGATGGAGATAGTTCTTC+AGG | 0.327702 | 6.4:-4009422 | MS.gene66971:CDS |
| GACTAATTTGCATATGGGTT+TGG | 0.331345 | 6.4:-4009807 | MS.gene66971:CDS |
| TACTCAGACTAATTTGCATA+TGG | 0.347854 | 6.4:-4009813 | MS.gene66971:CDS |
| ATAGACTGACATGTTGAAAT+AGG | 0.349826 | 6.4:+4009314 | None:intergenic |
| GCAGTGCCAGTCCGATAAAA+TGG | 0.359720 | 6.4:-4009570 | MS.gene66971:CDS |
| TTCTTATCCTCCGGCATCGT+TGG | 0.368225 | 6.4:+4010022 | None:intergenic |
| CTAACGCCACAGCAACATTC+TGG | 0.372076 | 6.4:+4009846 | None:intergenic |
| CTTGAAGGCTCTTGTTGATT+CGG | 0.374085 | 6.4:-4009912 | MS.gene66971:CDS |
| GTTCCAGCTGTCGCTAGATA+TGG | 0.391848 | 6.4:-4010052 | MS.gene66971:CDS |
| TATCATCAGGCAATATTGAT+TGG | 0.394849 | 6.4:-4008643 | MS.gene66971:CDS |
| AAGAGTCCTGCTTCGGTGAC+TGG | 0.398075 | 6.4:-4009470 | MS.gene66971:CDS |
| AAGGAAACCGGTACTGTGTC+TGG | 0.401751 | 6.4:-4010223 | MS.gene66971:CDS |
| ATTCCATGTCTAGGACTTCT+GGG | 0.407692 | 6.4:+4009119 | None:intergenic |
| CTCTTTCGTCATTCTTGCAA+TGG | 0.412331 | 6.4:-4008363 | MS.gene66971:CDS |
| AAATGTCAGTGGAGAGTCTA+TGG | 0.416004 | 6.4:-4009705 | MS.gene66971:CDS |
| TTGAAATAGGAGACTCAGCC+AGG | 0.416735 | 6.4:+4009327 | None:intergenic |
| GATAAAATGGCGTTCATCAA+AGG | 0.434224 | 6.4:-4009557 | MS.gene66971:CDS |
| AATGTTGCTGTGGCGTTAGA+AGG | 0.439725 | 6.4:-4009842 | MS.gene66971:CDS |
| ATATGTTTCTTCTTATCCTC+CGG | 0.443407 | 6.4:+4010013 | None:intergenic |
| GCGGTTTGCTTCTGATGAAA+TGG | 0.451524 | 6.4:-4009882 | MS.gene66971:CDS |
| CGCTGTATGAAGTTCTTGCT+AGG | 0.452007 | 6.4:-4010186 | MS.gene66971:CDS |
| CAGACTTTAGCTTCGAGTGC+AGG | 0.455292 | 6.4:-4010109 | MS.gene66971:CDS |
| CTCTTCAACAAGCTTGTTCG+AGG | 0.456204 | 6.4:-4010078 | MS.gene66971:CDS |
| GGAGTGTCAATAGGAAGCTT+TGG | 0.462265 | 6.4:-4009268 | MS.gene66971:CDS |
| GCTCGACTGCTCATACAATC+CGG | 0.478888 | 6.4:-4009740 | MS.gene66971:CDS |
| TGCATGATACTGTCAATCAT+TGG | 0.479754 | 6.4:+4010142 | None:intergenic |
| TGCTCAAGTTTCTGAGACCA+AGG | 0.480477 | 6.4:-4010242 | MS.gene66971:CDS |
| AGACACAGTACCGGTTTCCT+TGG | 0.485208 | 6.4:+4010225 | None:intergenic |
| ATCCATACCATTTCTCTCCT+CGG | 0.485625 | 6.4:+4009190 | None:intergenic |
| ACTCAGACTAATTTGCATAT+GGG | 0.487815 | 6.4:-4009812 | MS.gene66971:CDS |
| GAAACTTGAGCAAGAAACAT+AGG | 0.490263 | 6.4:+4010253 | None:intergenic |
| CAATCGGAACTCTCATCGGT+TGG | 0.490836 | 6.4:+4008698 | None:intergenic |
| ATTCCATATCTAGCGACAGC+TGG | 0.500350 | 6.4:+4010049 | None:intergenic |
| TTGTTGATTCGGATAATTGG+CGG | 0.501457 | 6.4:-4009901 | MS.gene66971:CDS |
| ACAAAGCGCAGATTTGTTTG+CGG | 0.505559 | 6.4:-4008389 | MS.gene66971:CDS |
| GTGGATCTAAACACTTCATC+AGG | 0.509692 | 6.4:+4009636 | None:intergenic |
| GTTTCTGAGACCAAGGAAAC+CGG | 0.510693 | 6.4:-4010235 | MS.gene66971:CDS |
| AATCGGAACTCTCATCGGTT+GGG | 0.513575 | 6.4:+4008699 | None:intergenic |
| GACATTTAACATGCGCAGCC+CGG | 0.516067 | 6.4:+4009721 | None:intergenic |
| TATTCTAAATATGACCAGAA+TGG | 0.516967 | 6.4:-4008608 | MS.gene66971:CDS |
| TTGGAACCAGTCACCGAAGC+AGG | 0.517104 | 6.4:+4009464 | None:intergenic |
| AACGATCAAAGAGTTATGCT+TGG | 0.519887 | 6.4:+4009772 | None:intergenic |
| TCAAGTGCCGAGGAGAGAAA+TGG | 0.521681 | 6.4:-4009197 | MS.gene66971:CDS |
| GCTGTATGAAGTTCTTGCTA+GGG | 0.522921 | 6.4:-4010185 | MS.gene66971:CDS |
| AACTCTATTCATAATTATGT+AGG | 0.525068 | 6.4:+4008290 | None:intergenic |
| AGGCATGAAGAGTCCTGCTT+CGG | 0.525449 | 6.4:-4009477 | MS.gene66971:CDS |
| ATTCACGTAGGAGTGTCAAT+AGG | 0.526456 | 6.4:-4009277 | MS.gene66971:CDS |
| TGAACAAGTAATTGAGGAGA+TGG | 0.526873 | 6.4:-4009594 | MS.gene66971:CDS |
| CTCGACTGCTCATACAATCC+GGG | 0.528172 | 6.4:-4009739 | MS.gene66971:CDS |
| AGACTCTTGAACCTTCGAAT+CGG | 0.530274 | 6.4:+4008665 | None:intergenic |
| ATGGATCACACGTTTCTGAA+TGG | 0.532430 | 6.4:-4009173 | MS.gene66971:CDS |
| CTTCCATGGATATGGATCCC+TGG | 0.532460 | 6.4:-4009345 | MS.gene66971:CDS |
| CGTACTCTCGAATACTTCCA+TGG | 0.534554 | 6.4:-4009359 | MS.gene66971:CDS |
| TATTCGAGAGTACGTGACTC+TGG | 0.535424 | 6.4:+4009368 | None:intergenic |
| TGCCGAGGAGAGAAATGGTA+TGG | 0.538874 | 6.4:-4009192 | MS.gene66971:CDS |
| GAACATCTTCAGAAGGCCTC+TGG | 0.540199 | 6.4:+4008465 | None:intergenic |
| GGAGATAGTTCTTCAGGTGA+TGG | 0.540688 | 6.4:-4009416 | MS.gene66971:CDS |
| TGGAATTGATCCAACGATGC+CGG | 0.540945 | 6.4:-4010032 | MS.gene66971:CDS |
| GTGAATCAGATGTGGGAGTA+CGG | 0.541970 | 6.4:+4009390 | None:intergenic |
| GCAAATCACGACAAGTATGA+TGG | 0.543100 | 6.4:-4008581 | MS.gene66971:CDS |
| TGCGGTGACGGACAGTATCA+AGG | 0.545775 | 6.4:-4008539 | MS.gene66971:CDS |
| AGGTTCAAGAGTCTATCATC+AGG | 0.546445 | 6.4:-4008656 | MS.gene66971:CDS |
| CTCTGGTTATCAGCATCAGC+AGG | 0.547461 | 6.4:+4008482 | None:intergenic |
| AGAACAATCGGAACTCTCAT+CGG | 0.550480 | 6.4:+4008694 | None:intergenic |
| GCGGTTCGCAGCTATTCAAA+TGG | 0.550554 | 6.4:-4009666 | MS.gene66971:CDS |
| AGACTTTAGCTTCGAGTGCA+GGG | 0.551485 | 6.4:-4010108 | MS.gene66971:CDS |
| AAGTATGATGGCAAAGAGTA+CGG | 0.552367 | 6.4:-4008569 | MS.gene66971:CDS |
| TTTGGAGCCTTGAAAATGGA+GGG | 0.552771 | 6.4:-4009250 | MS.gene66971:CDS |
| TACGGAAGCTCATGCGGTGA+CGG | 0.553418 | 6.4:-4008551 | MS.gene66971:CDS |
| CTCGAACAAGCTTGTTGAAG+AGG | 0.558983 | 6.4:+4010079 | None:intergenic |
| GCTGTAGTTCAACAATGGGA+AGG | 0.560642 | 6.4:-4010393 | None:intergenic |
| TCTTTGGATAGTTTGAGTTG+TGG | 0.564961 | 6.4:-4009947 | MS.gene66971:CDS |
| CTTTGGAGCCTTGAAAATGG+AGG | 0.580803 | 6.4:-4009251 | MS.gene66971:CDS |
| TCGAACAAGCTTGTTGAAGA+GGG | 0.583523 | 6.4:+4010080 | None:intergenic |
| CAGCCAGGGATCCATATCCA+TGG | 0.584011 | 6.4:+4009342 | None:intergenic |
| AGATCCACAAATTGTTCGCG+TGG | 0.587989 | 6.4:-4008429 | MS.gene66971:CDS |
| TCAAGCTCTCTTCGTAACAC+AGG | 0.592102 | 6.4:+4010361 | None:intergenic |
| TGATGAAGTGTTTAGATCCA+CGG | 0.595367 | 6.4:-4009634 | MS.gene66971:CDS |
| TCATATTTAGAATAAGCTGA+TGG | 0.595918 | 6.4:+4008617 | None:intergenic |
| CTCGTGAGCGAGTCAGATAG+AGG | 0.596905 | 6.4:+4009971 | None:intergenic |
| CTGCGCATGTTAAATGTCAG+TGG | 0.602349 | 6.4:-4009716 | MS.gene66971:CDS |
| CTTTCACGAACATCTTCAGA+AGG | 0.603973 | 6.4:+4008458 | None:intergenic |
| GAATTCTCCAGACACAGTAC+CGG | 0.604514 | 6.4:+4010216 | None:intergenic |
| AGGGGTTGATGTGTCTCTCA+AGG | 0.604823 | 6.4:-4009231 | MS.gene66971:CDS |
| GTCAGTGGAGAGTCTATGGA+TGG | 0.608577 | 6.4:-4009701 | MS.gene66971:CDS |
| GTTGATGTGTCTCTCAAGGA+CGG | 0.617613 | 6.4:-4009227 | MS.gene66971:CDS |
| ACTTACAACAGGACTTGTGT+TGG | 0.617904 | 6.4:+4009085 | None:intergenic |
| GACTCTGGTGAATCAGATGT+GGG | 0.622726 | 6.4:+4009383 | None:intergenic |
| TCTTCAACAAGCTTGTTCGA+GGG | 0.630695 | 6.4:-4010077 | MS.gene66971:CDS |
| GGAGGTTGAACAAGTAATTG+AGG | 0.633070 | 6.4:-4009600 | MS.gene66971:CDS |
| GGTTATCAGCATCAGCAGGA+AGG | 0.633093 | 6.4:+4008486 | None:intergenic |
| AAAGAGTACGGAAGCTCATG+CGG | 0.633405 | 6.4:-4008557 | MS.gene66971:CDS |
| AGCATCAGCAGGAAGGTCGT+CGG | 0.633798 | 6.4:+4008493 | None:intergenic |
| TTCATAATTATGTAGGAACA+AGG | 0.637074 | 6.4:+4008297 | None:intergenic |
| CGGTCTGTTCTCAAGTGCCG+AGG | 0.639180 | 6.4:-4009207 | MS.gene66971:CDS |
| TTGGAGCCTTGAAAATGGAG+GGG | 0.639404 | 6.4:-4009249 | MS.gene66971:CDS |
| ATCCCCAGAAGTCCTAGACA+TGG | 0.640903 | 6.4:-4009122 | MS.gene66971:CDS |
| GTTGAGCCAAATTAAAGGTG+TGG | 0.646088 | 6.4:+4008340 | None:intergenic |
| TTCCATGTCTAGGACTTCTG+GGG | 0.653399 | 6.4:+4009120 | None:intergenic |
| TGACTCTGGTGAATCAGATG+TGG | 0.654691 | 6.4:+4009382 | None:intergenic |
| CTGCTGATGCTGATAACCAG+AGG | 0.662905 | 6.4:-4008481 | MS.gene66971:CDS |
| ATAATTTGAACTATTCACGT+AGG | 0.665673 | 6.4:-4009289 | MS.gene66971:CDS |
| TGGATGGTAATTCTCAGAAG+CGG | 0.678871 | 6.4:-4009685 | MS.gene66971:CDS |
| AATTGATCCAACGATGCCGG+AGG | 0.688811 | 6.4:-4010029 | MS.gene66971:CDS |
| GATCACACGTTTCTGAATGG+CGG | 0.693143 | 6.4:-4009170 | MS.gene66971:CDS |
| GGTTTGCCAGAATGTTGCTG+TGG | 0.695386 | 6.4:-4009852 | MS.gene66971:CDS |
| TGAAATAGGAGACTCAGCCA+GGG | 0.704992 | 6.4:+4009328 | None:intergenic |
| ACCTCCGAGAAAATACTCCG+TGG | 0.716880 | 6.4:+4009617 | None:intergenic |
| GAATGGCGGAGATTTAACTG+AGG | 0.756668 | 6.4:-4009156 | MS.gene66971:CDS |
| GGTGACGGACAGTATCAAGG+AGG | 0.795781 | 6.4:-4008536 | MS.gene66971:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATTTCATGAATGAA+TGG | + | chr6.4:4009780-4009799 | None:intergenic | 15.0% |
| !! | AAAATCTTATGTGAAAGATT+TGG | - | chr6.4:4008393-4008412 | MS.gene66971:CDS | 20.0% |
| !! | AAATCAAATAATGTCGAATA+GGG | + | chr6.4:4009641-4009660 | None:intergenic | 20.0% |
| !! | TAAATCAAATAATGTCGAAT+AGG | + | chr6.4:4009642-4009661 | None:intergenic | 20.0% |
| !! | TCAAGTTTCAATAAACAAAA+AGG | + | chr6.4:4009862-4009881 | None:intergenic | 20.0% |
| ! | AAAATCTCTTCCACTAAAAT+TGG | + | chr6.4:4009241-4009260 | None:intergenic | 25.0% |
| ! | ATAATTTGAACTATTCACGT+AGG | - | chr6.4:4009394-4009413 | MS.gene66971:CDS | 25.0% |
| ! | TATTCTAAATATGACCAGAA+TGG | - | chr6.4:4010075-4010094 | MS.gene66971:CDS | 25.0% |
| ! | TTCTGATGAAATGGTTAATA+GGG | - | chr6.4:4008810-4008829 | MS.gene66971:intron | 25.0% |
| !! | ATGTGAAAGATTTGGATTTT+AGG | - | chr6.4:4008401-4008420 | MS.gene66971:CDS | 25.0% |
| !! | GTTAGTGTTTCTTTTTGTTA+TGG | - | chr6.4:4009811-4009830 | MS.gene66971:CDS | 25.0% |
| !! | TCATATTTAGAATAAGCTGA+TGG | + | chr6.4:4010069-4010088 | None:intergenic | 25.0% |
| !! | TGTGAAAGATTTGGATTTTA+GGG | - | chr6.4:4008402-4008421 | MS.gene66971:CDS | 25.0% |
| !! | TTTTAGTGGAAGAGATTTTA+TGG | - | chr6.4:4009242-4009261 | MS.gene66971:CDS | 25.0% |
| ATAGACTGACATGTTGAAAT+AGG | + | chr6.4:4009372-4009391 | None:intergenic | 30.0% | |
| ATATGTTTCTTCTTATCCTC+CGG | + | chr6.4:4008673-4008692 | None:intergenic | 30.0% | |
| CTTCTGATGAAATGGTTAAT+AGG | - | chr6.4:4008809-4008828 | MS.gene66971:intron | 30.0% | |
| TATCATCAGGCAATATTGAT+TGG | - | chr6.4:4010040-4010059 | MS.gene66971:CDS | 30.0% | |
| ! | ACTCAGACTAATTTGCATAT+GGG | - | chr6.4:4008871-4008890 | MS.gene66971:intron | 30.0% |
| ! | ATATTTGAGACACTTACAAC+AGG | + | chr6.4:4009612-4009631 | None:intergenic | 30.0% |
| ! | TACTCAGACTAATTTGCATA+TGG | - | chr6.4:4008870-4008889 | MS.gene66971:intron | 30.0% |
| !! | AATCGGTTTTTCAGAACAAT+CGG | + | chr6.4:4010004-4010023 | None:intergenic | 30.0% |
| !! | TTTGATGAACGCCATTTTAT+CGG | + | chr6.4:4009127-4009146 | None:intergenic | 30.0% |
| AACGATCAAAGAGTTATGCT+TGG | + | chr6.4:4008914-4008933 | None:intergenic | 35.0% | |
| AAGTATGATGGCAAAGAGTA+CGG | - | chr6.4:4010114-4010133 | MS.gene66971:CDS | 35.0% | |
| CGAAGCTAAAGTCTGAATTA+TGG | + | chr6.4:4008569-4008588 | None:intergenic | 35.0% | |
| GAAACTTGAGCAAGAAACAT+AGG | + | chr6.4:4008433-4008452 | None:intergenic | 35.0% | |
| GATAAAATGGCGTTCATCAA+AGG | - | chr6.4:4009126-4009145 | MS.gene66971:CDS | 35.0% | |
| GCGAATGACAAAAAATTGAG+AGG | - | chr6.4:4009186-4009205 | MS.gene66971:CDS | 35.0% | |
| GTGATCTCTGATAACATGAA+AGG | + | chr6.4:4009906-4009925 | None:intergenic | 35.0% | |
| TGAACAAGTAATTGAGGAGA+TGG | - | chr6.4:4009089-4009108 | MS.gene66971:intron | 35.0% | |
| TGACTGTTGAGCCAAATTAA+AGG | + | chr6.4:4010351-4010370 | None:intergenic | 35.0% | |
| TGCATGATACTGTCAATCAT+TGG | + | chr6.4:4008544-4008563 | None:intergenic | 35.0% | |
| TTTGTCATTCGCAACTTTCT+TGG | + | chr6.4:4009178-4009197 | None:intergenic | 35.0% | |
| ! | AGATTTTTGACACTCCAAAG+AGG | - | chr6.4:4009941-4009960 | MS.gene66971:CDS | 35.0% |
| ! | AGTGGAAGAGATTTTATGGA+TGG | - | chr6.4:4009246-4009265 | MS.gene66971:CDS | 35.0% |
| ! | CTTTTGGATATTCCATGTCT+AGG | + | chr6.4:4009576-4009595 | None:intergenic | 35.0% |
| ! | GACTAATTTGCATATGGGTT+TGG | - | chr6.4:4008876-4008895 | MS.gene66971:intron | 35.0% |
| ! | TGATGAAGTGTTTAGATCCA+CGG | - | chr6.4:4009049-4009068 | MS.gene66971:intron | 35.0% |
| !! | CTCTTGTTGATTCGGATAAT+TGG | - | chr6.4:4008779-4008798 | MS.gene66971:intron | 35.0% |
| !! | TCTTTGGAGTGTCAAAAATC+TGG | + | chr6.4:4009942-4009961 | None:intergenic | 35.0% |
| !! | TCTTTGGATAGTTTGAGTTG+TGG | - | chr6.4:4008736-4008755 | MS.gene66971:CDS | 35.0% |
| !! | TTGTTGATTCGGATAATTGG+CGG | - | chr6.4:4008782-4008801 | MS.gene66971:intron | 35.0% |
| AAATGTCAGTGGAGAGTCTA+TGG | - | chr6.4:4008978-4008997 | MS.gene66971:intron | 40.0% | |
| ACTTACAACAGGACTTGTGT+TGG | + | chr6.4:4009601-4009620 | None:intergenic | 40.0% | |
| AGAACAATCGGAACTCTCAT+CGG | + | chr6.4:4009992-4010011 | None:intergenic | 40.0% | |
| AGACTCTTGAACCTTCGAAT+CGG | + | chr6.4:4010021-4010040 | None:intergenic | 40.0% | |
| AGGTTCAAGAGTCTATCATC+AGG | - | chr6.4:4010027-4010046 | MS.gene66971:CDS | 40.0% | |
| ATCCATACCATTTCTCTCCT+CGG | + | chr6.4:4009496-4009515 | None:intergenic | 40.0% | |
| ATGGATCACACGTTTCTGAA+TGG | - | chr6.4:4009510-4009529 | MS.gene66971:CDS | 40.0% | |
| ATGGATGGAGATAGTTCTTC+AGG | - | chr6.4:4009261-4009280 | MS.gene66971:CDS | 40.0% | |
| CAATGGCCACACCTTTAATT+TGG | - | chr6.4:4010337-4010356 | MS.gene66971:CDS | 40.0% | |
| CTCGAATACTTCCATGGATA+TGG | - | chr6.4:4009330-4009349 | MS.gene66971:CDS | 40.0% | |
| CTCTTTCGTCATTCTTGCAA+TGG | - | chr6.4:4010320-4010339 | MS.gene66971:CDS | 40.0% | |
| CTTTCACGAACATCTTCAGA+AGG | + | chr6.4:4010228-4010247 | None:intergenic | 40.0% | |
| GCAAATCACGACAAGTATGA+TGG | - | chr6.4:4010102-4010121 | MS.gene66971:CDS | 40.0% | |
| GCTGTATGAAGTTCTTGCTA+GGG | - | chr6.4:4008498-4008517 | MS.gene66971:CDS | 40.0% | |
| GGAGGTTGAACAAGTAATTG+AGG | - | chr6.4:4009083-4009102 | MS.gene66971:intron | 40.0% | |
| GTGGATCTAAACACTTCATC+AGG | + | chr6.4:4009050-4009069 | None:intergenic | 40.0% | |
| GTTGAGCCAAATTAAAGGTG+TGG | + | chr6.4:4010346-4010365 | None:intergenic | 40.0% | |
| TGGATGGTAATTCTCAGAAG+CGG | - | chr6.4:4008998-4009017 | MS.gene66971:intron | 40.0% | |
| ! | ACAAAGCGCAGATTTGTTTG+CGG | - | chr6.4:4010294-4010313 | MS.gene66971:CDS | 40.0% |
| ! | ATTCCATGTCTAGGACTTCT+GGG | + | chr6.4:4009567-4009586 | None:intergenic | 40.0% |
| ! | CTGCGCTTTGTCTTTTGAAT+TGG | + | chr6.4:4010285-4010304 | None:intergenic | 40.0% |
| ! | CTTGAAGGCTCTTGTTGATT+CGG | - | chr6.4:4008771-4008790 | MS.gene66971:intron | 40.0% |
| ! | TATTCCATGTCTAGGACTTC+TGG | + | chr6.4:4009568-4009587 | None:intergenic | 40.0% |
| ! | TCTTCAACAAGCTTGTTCGA+GGG | - | chr6.4:4008606-4008625 | MS.gene66971:CDS | 40.0% |
| ! | TTTGGAGCCTTGAAAATGGA+GGG | - | chr6.4:4009433-4009452 | MS.gene66971:CDS | 40.0% |
| ! | TTTTCCACGCGAACAATTTG+TGG | + | chr6.4:4010261-4010280 | None:intergenic | 40.0% |
| !! | AAGCTTTGGAGCCTTGAAAA+TGG | - | chr6.4:4009429-4009448 | MS.gene66971:CDS | 40.0% |
| !! | AGATCCACGGAGTATTTTCT+CGG | - | chr6.4:4009062-4009081 | MS.gene66971:intron | 40.0% |
| !! | AGGACTTGTGTTGGTACTTT+TGG | + | chr6.4:4009592-4009611 | None:intergenic | 40.0% |
| !! | ATTCACGTAGGAGTGTCAAT+AGG | - | chr6.4:4009406-4009425 | MS.gene66971:CDS | 40.0% |
| !! | CGTGATTTGCTAAACCATTC+TGG | + | chr6.4:4010092-4010111 | None:intergenic | 40.0% |
| !! | GTGACTGGTTCCAATTTTAG+TGG | - | chr6.4:4009228-4009247 | MS.gene66971:CDS | 40.0% |
| !! | GTTCTGAAAAACCGATTCGA+AGG | - | chr6.4:4010007-4010026 | MS.gene66971:CDS | 40.0% |
| !! | TCGAACAAGCTTGTTGAAGA+GGG | + | chr6.4:4008606-4008625 | None:intergenic | 40.0% |
| AATGTTGCTGTGGCGTTAGA+AGG | - | chr6.4:4008841-4008860 | MS.gene66971:intron | 45.0% | |
| AGATCCACAAATTGTTCGCG+TGG | - | chr6.4:4010254-4010273 | MS.gene66971:CDS | 45.0% | |
| ATTCCATATCTAGCGACAGC+TGG | + | chr6.4:4008637-4008656 | None:intergenic | 45.0% | |
| CGCTGTATGAAGTTCTTGCT+AGG | - | chr6.4:4008497-4008516 | MS.gene66971:CDS | 45.0% | |
| CGTACTCTCGAATACTTCCA+TGG | - | chr6.4:4009324-4009343 | MS.gene66971:CDS | 45.0% | |
| CTGCGCATGTTAAATGTCAG+TGG | - | chr6.4:4008967-4008986 | MS.gene66971:intron | 45.0% | |
| GAAGTTCTTGCTAGGGTTCA+TGG | - | chr6.4:4008505-4008524 | MS.gene66971:CDS | 45.0% | |
| GAATTCTCCAGACACAGTAC+CGG | + | chr6.4:4008470-4008489 | None:intergenic | 45.0% | |
| GACTCTGGTGAATCAGATGT+GGG | + | chr6.4:4009303-4009322 | None:intergenic | 45.0% | |
| GATCACACGTTTCTGAATGG+CGG | - | chr6.4:4009513-4009532 | MS.gene66971:CDS | 45.0% | |
| GGAGATAGTTCTTCAGGTGA+TGG | - | chr6.4:4009267-4009286 | MS.gene66971:CDS | 45.0% | |
| GTGAATCAGATGTGGGAGTA+CGG | + | chr6.4:4009296-4009315 | None:intergenic | 45.0% | |
| GTTGATGTGTCTCTCAAGGA+CGG | - | chr6.4:4009456-4009475 | MS.gene66971:CDS | 45.0% | |
| TCAAGCTCTCTTCGTAACAC+AGG | + | chr6.4:4008325-4008344 | None:intergenic | 45.0% | |
| TGAAATAGGAGACTCAGCCA+GGG | + | chr6.4:4009358-4009377 | None:intergenic | 45.0% | |
| TGACTCTGGTGAATCAGATG+TGG | + | chr6.4:4009304-4009323 | None:intergenic | 45.0% | |
| TGGAATTGATCCAACGATGC+CGG | - | chr6.4:4008651-4008670 | MS.gene66971:CDS | 45.0% | |
| TTGAAATAGGAGACTCAGCC+AGG | + | chr6.4:4009359-4009378 | None:intergenic | 45.0% | |
| TTGGAGCCTTGAAAATGGAG+GGG | - | chr6.4:4009434-4009453 | MS.gene66971:CDS | 45.0% | |
| ! | AAAGAGTACGGAAGCTCATG+CGG | - | chr6.4:4010126-4010145 | MS.gene66971:CDS | 45.0% |
| ! | AATCGGAACTCTCATCGGTT+GGG | + | chr6.4:4009987-4010006 | None:intergenic | 45.0% |
| ! | AGACTTTAGCTTCGAGTGCA+GGG | - | chr6.4:4008575-4008594 | MS.gene66971:CDS | 45.0% |
| ! | CATCAACCCCTCCATTTTCA+AGG | + | chr6.4:4009443-4009462 | None:intergenic | 45.0% |
| ! | CTCTTCAACAAGCTTGTTCG+AGG | - | chr6.4:4008605-4008624 | MS.gene66971:CDS | 45.0% |
| ! | GAATGGCGGAGATTTAACTG+AGG | - | chr6.4:4009527-4009546 | MS.gene66971:CDS | 45.0% |
| ! | GCGGTTTGCTTCTGATGAAA+TGG | - | chr6.4:4008801-4008820 | MS.gene66971:intron | 45.0% |
| ! | GGAGTGTCAATAGGAAGCTT+TGG | - | chr6.4:4009415-4009434 | MS.gene66971:CDS | 45.0% |
| ! | TATTCGAGAGTACGTGACTC+TGG | + | chr6.4:4009318-4009337 | None:intergenic | 45.0% |
| ! | TTCCATGTCTAGGACTTCTG+GGG | + | chr6.4:4009566-4009585 | None:intergenic | 45.0% |
| !! | CTCGAACAAGCTTGTTGAAG+AGG | + | chr6.4:4008607-4008626 | None:intergenic | 45.0% |
| !! | CTTTGGAGCCTTGAAAATGG+AGG | - | chr6.4:4009432-4009451 | MS.gene66971:CDS | 45.0% |
| !! | GTTTCTGAGACCAAGGAAAC+CGG | - | chr6.4:4008448-4008467 | MS.gene66971:CDS | 45.0% |
| !! | TGAACGCCATTTTATCGGAC+TGG | + | chr6.4:4009122-4009141 | None:intergenic | 45.0% |
| !! | TGCTCAAGTTTCTGAGACCA+AGG | - | chr6.4:4008441-4008460 | MS.gene66971:CDS | 45.0% |
| AAGGAAACCGGTACTGTGTC+TGG | - | chr6.4:4008460-4008479 | MS.gene66971:CDS | 50.0% | |
| AATTGATCCAACGATGCCGG+AGG | - | chr6.4:4008654-4008673 | MS.gene66971:CDS | 50.0% | |
| ACCTCCGAGAAAATACTCCG+TGG | + | chr6.4:4009069-4009088 | None:intergenic | 50.0% | |
| AGAGAGCGAATGAGCCTCTT+TGG | + | chr6.4:4009958-4009977 | None:intergenic | 50.0% | |
| AGGCATGAAGAGTCCTGCTT+CGG | - | chr6.4:4009206-4009225 | MS.gene66971:CDS | 50.0% | |
| ATCCCCAGAAGTCCTAGACA+TGG | - | chr6.4:4009561-4009580 | MS.gene66971:CDS | 50.0% | |
| CAATCGGAACTCTCATCGGT+TGG | + | chr6.4:4009988-4010007 | None:intergenic | 50.0% | |
| CTAACGCCACAGCAACATTC+TGG | + | chr6.4:4008840-4008859 | None:intergenic | 50.0% | |
| CTCGACTGCTCATACAATCC+GGG | - | chr6.4:4008944-4008963 | MS.gene66971:intron | 50.0% | |
| CTCTGGTTATCAGCATCAGC+AGG | + | chr6.4:4010204-4010223 | None:intergenic | 50.0% | |
| CTGCTGATGCTGATAACCAG+AGG | - | chr6.4:4010202-4010221 | MS.gene66971:CDS | 50.0% | |
| CTTCCATGGATATGGATCCC+TGG | - | chr6.4:4009338-4009357 | MS.gene66971:CDS | 50.0% | |
| GAACATCTTCAGAAGGCCTC+TGG | + | chr6.4:4010221-4010240 | None:intergenic | 50.0% | |
| GACATTTAACATGCGCAGCC+CGG | + | chr6.4:4008965-4008984 | None:intergenic | 50.0% | |
| GCAGTGCCAGTCCGATAAAA+TGG | - | chr6.4:4009113-4009132 | MS.gene66971:CDS | 50.0% | |
| GCGGTTCGCAGCTATTCAAA+TGG | - | chr6.4:4009017-4009036 | MS.gene66971:intron | 50.0% | |
| GCTCGACTGCTCATACAATC+CGG | - | chr6.4:4008943-4008962 | MS.gene66971:intron | 50.0% | |
| GGTTATCAGCATCAGCAGGA+AGG | + | chr6.4:4010200-4010219 | None:intergenic | 50.0% | |
| GGTTTGCCAGAATGTTGCTG+TGG | - | chr6.4:4008831-4008850 | MS.gene66971:intron | 50.0% | |
| GTCAGTGGAGAGTCTATGGA+TGG | - | chr6.4:4008982-4009001 | MS.gene66971:intron | 50.0% | |
| GTTCCAGCTGTCGCTAGATA+TGG | - | chr6.4:4008631-4008650 | MS.gene66971:CDS | 50.0% | |
| TGACTCGCTCACGAGTTCTT+TGG | - | chr6.4:4008720-4008739 | MS.gene66971:CDS | 50.0% | |
| TGCCGAGGAGAGAAATGGTA+TGG | - | chr6.4:4009491-4009510 | MS.gene66971:CDS | 50.0% | |
| TGGTGCAGCTCTTTGCTTGA+AGG | - | chr6.4:4008756-4008775 | MS.gene66971:CDS | 50.0% | |
| TTCTTATCCTCCGGCATCGT+TGG | + | chr6.4:4008664-4008683 | None:intergenic | 50.0% | |
| ! | CAGACTTTAGCTTCGAGTGC+AGG | - | chr6.4:4008574-4008593 | MS.gene66971:CDS | 50.0% |
| !! | AGACACAGTACCGGTTTCCT+TGG | + | chr6.4:4008461-4008480 | None:intergenic | 50.0% |
| !! | AGGGGTTGATGTGTCTCTCA+AGG | - | chr6.4:4009452-4009471 | MS.gene66971:CDS | 50.0% |
| !! | TCAAGTGCCGAGGAGAGAAA+TGG | - | chr6.4:4009486-4009505 | MS.gene66971:CDS | 50.0% |
| !! | TCCACGGAGTATTTTCTCGG+AGG | - | chr6.4:4009065-4009084 | MS.gene66971:intron | 50.0% |
| AAGAGTCCTGCTTCGGTGAC+TGG | - | chr6.4:4009213-4009232 | MS.gene66971:CDS | 55.0% | |
| AGCATCAGCAGGAAGGTCGT+CGG | + | chr6.4:4010193-4010212 | None:intergenic | 55.0% | |
| CAGCCAGGGATCCATATCCA+TGG | + | chr6.4:4009344-4009363 | None:intergenic | 55.0% | |
| CTCGTGAGCGAGTCAGATAG+AGG | + | chr6.4:4008715-4008734 | None:intergenic | 55.0% | |
| TACGGAAGCTCATGCGGTGA+CGG | - | chr6.4:4010132-4010151 | MS.gene66971:CDS | 55.0% | |
| TTGGAACCAGTCACCGAAGC+AGG | + | chr6.4:4009222-4009241 | None:intergenic | 55.0% | |
| !! | GGTGACGGACAGTATCAAGG+AGG | - | chr6.4:4010147-4010166 | MS.gene66971:CDS | 55.0% |
| !! | TGCGGTGACGGACAGTATCA+AGG | - | chr6.4:4010144-4010163 | MS.gene66971:CDS | 55.0% |
| ! | CGGTCTGTTCTCAAGTGCCG+AGG | - | chr6.4:4009476-4009495 | MS.gene66971:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 4008304 | 4010401 | 4008304 | ID=MS.gene66971 |
| chr6.4 | mRNA | 4008304 | 4010401 | 4008304 | ID=MS.gene66971.t1;Parent=MS.gene66971 |
| chr6.4 | exon | 4009091 | 4010401 | 4009091 | ID=MS.gene66971.t1.exon1;Parent=MS.gene66971.t1 |
| chr6.4 | CDS | 4009091 | 4010401 | 4009091 | ID=cds.MS.gene66971.t1;Parent=MS.gene66971.t1 |
| chr6.4 | exon | 4008304 | 4008786 | 4008304 | ID=MS.gene66971.t1.exon2;Parent=MS.gene66971.t1 |
| chr6.4 | CDS | 4008304 | 4008786 | 4008304 | ID=cds.MS.gene66971.t1;Parent=MS.gene66971.t1 |
| Gene Sequence |
| Protein sequence |
