Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67529.t1 | XP_003607217.2 | 89.3 | 948 | 98 | 1 | 1 | 945 | 40 | 987 | 0.00E+00 | 1699.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67529.t1 | P36428 | 72.2 | 947 | 258 | 3 | 4 | 945 | 55 | 1001 | 0.0e+00 | 1404.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67529.t1 | G7JNH3 | 89.3 | 948 | 98 | 1 | 1 | 945 | 1 | 948 | 0.0e+00 | 1699.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene67529 | MS.gene68723 | PPI |
| MS.gene67529 | MS.gene014188 | PPI |
| MS.gene063074 | MS.gene67529 | PPI |
| MS.gene68122 | MS.gene67529 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67529.t1 | MTR_4g074640 | 89.346 | 948 | 98 | 1 | 1 | 945 | 1 | 948 | 0.0 | 1734 |
| MS.gene67529.t1 | MTR_4g074670 | 82.276 | 457 | 81 | 0 | 5 | 461 | 8 | 464 | 0.0 | 822 |
| MS.gene67529.t1 | MTR_4g074670 | 81.609 | 174 | 32 | 0 | 774 | 947 | 462 | 635 | 4.85e-73 | 253 |
| MS.gene67529.t1 | MTR_4g074670 | 79.787 | 282 | 57 | 0 | 180 | 461 | 1 | 282 | 4.17e-162 | 483 |
| MS.gene67529.t1 | MTR_4g074670 | 81.609 | 174 | 32 | 0 | 774 | 947 | 280 | 453 | 4.62e-75 | 254 |
| MS.gene67529.t1 | MTR_3g118360 | 34.545 | 825 | 448 | 21 | 13 | 804 | 86 | 851 | 1.08e-129 | 412 |
| MS.gene67529.t1 | MTR_3g118360 | 34.545 | 825 | 448 | 21 | 13 | 804 | 86 | 851 | 1.13e-129 | 412 |
| MS.gene67529.t1 | MTR_3g118360 | 34.038 | 852 | 468 | 22 | 13 | 831 | 86 | 876 | 4.83e-129 | 414 |
| MS.gene67529.t1 | MTR_3g118360 | 32.190 | 612 | 343 | 15 | 222 | 802 | 1 | 571 | 2.26e-67 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67529.t1 | AT1G50200 | 72.228 | 947 | 258 | 3 | 4 | 945 | 55 | 1001 | 0.0 | 1397 |
| MS.gene67529.t1 | AT1G50200 | 71.623 | 955 | 258 | 4 | 4 | 945 | 55 | 1009 | 0.0 | 1392 |
| MS.gene67529.t1 | AT5G22800 | 35.152 | 825 | 444 | 21 | 13 | 804 | 108 | 874 | 3.76e-135 | 431 |
| MS.gene67529.t1 | AT5G22800 | 35.152 | 825 | 444 | 21 | 13 | 804 | 83 | 849 | 7.86e-135 | 429 |
Find 215 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATAATGTTCAAGTTTA+TGG | 0.095893 | 5.4:-14978089 | MS.gene67529:CDS |
| AACATTTATGCTACTTATTT+TGG | 0.136454 | 5.4:-14983741 | MS.gene67529:CDS |
| GAAGAACAATAGATCCTTTC+TGG | 0.201321 | 5.4:+14977655 | None:intergenic |
| CACCAGCTCGAATGCACTTC+TGG | 0.208889 | 5.4:+14984020 | None:intergenic |
| ACTGGTGCTCGGCCATATTC+TGG | 0.216626 | 5.4:-14981732 | MS.gene67529:CDS |
| AAGGGTCTGCGGACTGTTTC+TGG | 0.234343 | 5.4:-14977413 | MS.gene67529:CDS |
| TCTTTGGTCAGGAAAATTTC+TGG | 0.242948 | 5.4:-14983501 | MS.gene67529:intron |
| ATGGAACCTTGTCTTTATTC+AGG | 0.262339 | 5.4:-14983365 | MS.gene67529:intron |
| GTTTCAAATTTGCTTGGTTC+AGG | 0.270432 | 5.4:-14979565 | MS.gene67529:CDS |
| GACAGCTGCGGAACATGTTC+AGG | 0.278661 | 5.4:-14980585 | MS.gene67529:CDS |
| ATGCTGGGCAGCTGGGCTTT+TGG | 0.288927 | 5.4:-14983938 | MS.gene67529:CDS |
| TAAAGGAGATAAAGGTAAAT+TGG | 0.291959 | 5.4:-14974641 | MS.gene67529:CDS |
| TGCTCTTGATGCAATTAAAA+TGG | 0.295903 | 5.4:-14977014 | MS.gene67529:CDS |
| ATCAAGAACTGCTCAAAATA+AGG | 0.306307 | 5.4:-14979786 | MS.gene67529:intron |
| CCAGTGTCAACGTGCTTTGC+AGG | 0.310029 | 5.4:+14983156 | None:intergenic |
| AATTGACTCAATTCTTCTTA+AGG | 0.321886 | 5.4:+14977508 | None:intergenic |
| ATGTATGGTTAGCGGCTATA+AGG | 0.328806 | 5.4:+14977819 | None:intergenic |
| CCTACCTGTGTGAGATCTAA+TGG | 0.332388 | 5.4:+14979970 | None:intergenic |
| CCTGGACGTGTTCTTCCCTT+TGG | 0.334344 | 5.4:-14983651 | MS.gene67529:CDS |
| ATGTCTAACCACAGTTCAAT+AGG | 0.335891 | 5.4:-14983206 | MS.gene67529:intron |
| TGGTGATGTTGGTGTAATTC+TGG | 0.341373 | 5.4:-14978812 | MS.gene67529:CDS |
| TGAGCAAATTAATGCTGAAT+TGG | 0.344749 | 5.4:-14977480 | MS.gene67529:CDS |
| CAGTGGCTGAGTAATGCTTT+GGG | 0.345353 | 5.4:-14974610 | MS.gene67529:CDS |
| TCAGGAAAATTTCTGGGAAA+TGG | 0.345759 | 5.4:-14983494 | MS.gene67529:intron |
| TAACCGAGATGCCGCATCTT+TGG | 0.349882 | 5.4:-14983419 | MS.gene67529:CDS |
| GGTCCGACTTTCCCAGAATA+TGG | 0.356983 | 5.4:+14981720 | None:intergenic |
| CTGTCATTTGCCATTGCTGA+TGG | 0.364745 | 5.4:-14981639 | MS.gene67529:CDS |
| TGTGCTGGGGTGTCGGATAA+AGG | 0.370284 | 5.4:-14974658 | MS.gene67529:CDS |
| CTCTTCGAAGAACTTCAAAA+AGG | 0.370514 | 5.4:+14985150 | None:intergenic |
| ATTCAACCTGCCTTGAGATA+TGG | 0.371016 | 5.4:-14983384 | MS.gene67529:CDS |
| TTTGAATTGTGGGATACATA+TGG | 0.375692 | 5.4:-14979997 | MS.gene67529:CDS |
| TCGTGCTTCACATTGGTAAT+GGG | 0.382910 | 5.4:-14978061 | MS.gene67529:CDS |
| AGTTTGCCCAATCTAGTGTT+AGG | 0.386296 | 5.4:+14984061 | None:intergenic |
| GCAGTGGCTGAGTAATGCTT+TGG | 0.389443 | 5.4:-14974611 | MS.gene67529:CDS |
| AGCAGAATAGCATCGAAAAT+AGG | 0.394070 | 5.4:+14983063 | None:intergenic |
| CTTTGGTCAGGAAAATTTCT+GGG | 0.395767 | 5.4:-14983500 | MS.gene67529:intron |
| ATAGGTAGCGTTTGAATTGT+GGG | 0.406155 | 5.4:-14980007 | MS.gene67529:intron |
| TTCTCATGTTGATGTTGGCC+TGG | 0.406787 | 5.4:-14974999 | MS.gene67529:CDS |
| TACCTGAAGTAGGGCTATCT+TGG | 0.407129 | 5.4:+14975278 | None:intergenic |
| CAAGAGGAGGAGGAAAGTTT+CGG | 0.410641 | 5.4:-14980753 | MS.gene67529:CDS |
| TTCGTGCTTCACATTGGTAA+TGG | 0.413069 | 5.4:-14978062 | MS.gene67529:CDS |
| CTTAAGGAATCAGCATCAAC+AGG | 0.414659 | 5.4:+14977524 | None:intergenic |
| ATATCTCTGGACTCATAGTC+AGG | 0.418157 | 5.4:+14983693 | None:intergenic |
| AACAGCAGCAAGAGCACATT+AGG | 0.421486 | 5.4:-14980785 | MS.gene67529:CDS |
| CTATGCTGAGCAAGGTGGTC+AGG | 0.422720 | 5.4:-14978776 | MS.gene67529:intron |
| TCAAACAAGAAGCCATTAGC+TGG | 0.426238 | 5.4:-14983907 | MS.gene67529:CDS |
| AAGTGTTGTGGCAAATGTGC+TGG | 0.430083 | 5.4:-14980829 | MS.gene67529:CDS |
| AACAAGGTTGTAGTTTGTGC+TGG | 0.431318 | 5.4:-14974673 | MS.gene67529:CDS |
| TGTTGATCCTAACACTAGAT+TGG | 0.434211 | 5.4:-14984068 | MS.gene67529:CDS |
| ATGCTTTGGGGTTACTGAAA+GGG | 0.434727 | 5.4:-14974597 | MS.gene67529:CDS |
| ATTTCAGCTTTCTTAGCAGC+AGG | 0.441476 | 5.4:+14975306 | None:intergenic |
| AATGTAGGTTTATCCTGATC+CGG | 0.441638 | 5.4:-14977317 | MS.gene67529:intron |
| GTGTCGGATAAAGGAGATAA+AGG | 0.442074 | 5.4:-14974649 | MS.gene67529:CDS |
| TTGAATTGTGGGATACATAT+GGG | 0.443063 | 5.4:-14979996 | MS.gene67529:CDS |
| GGCCAAGATAGCCCTACTTC+AGG | 0.446270 | 5.4:-14975280 | MS.gene67529:intron |
| TGTATGGTTAGCGGCTATAA+GGG | 0.450030 | 5.4:+14977820 | None:intergenic |
| ACCCTTGATACGCATGGCTT+CGG | 0.450138 | 5.4:+14977430 | None:intergenic |
| TTCTGGGAAATGGGTGTCAC+AGG | 0.450449 | 5.4:-14983484 | MS.gene67529:CDS |
| TATAGGTAGCGTTTGAATTG+TGG | 0.450971 | 5.4:-14980008 | MS.gene67529:intron |
| ACTATGAGTCCAGAGATATA+TGG | 0.451098 | 5.4:-14983689 | MS.gene67529:CDS |
| GCGTTAGCAAAGAGGAGAGT+AGG | 0.452058 | 5.4:+14985079 | None:intergenic |
| ATAAAATTGACATGGCATAC+AGG | 0.452723 | 5.4:-14981686 | MS.gene67529:CDS |
| TTTCGGCAGAACCTTAGTTA+AGG | 0.454210 | 5.4:-14980736 | MS.gene67529:intron |
| TGCCGAAGCCATGCGTATCA+AGG | 0.455197 | 5.4:-14977432 | MS.gene67529:CDS |
| ACCAGCTCGAATGCACTTCT+GGG | 0.457402 | 5.4:+14984021 | None:intergenic |
| AAGTTCCCATGCCCAGCTAA+TGG | 0.458940 | 5.4:+14983895 | None:intergenic |
| CAGGAAAATTTCTGGGAAAT+GGG | 0.459057 | 5.4:-14983493 | MS.gene67529:CDS |
| AAACTTTAACCATATATCTC+TGG | 0.463052 | 5.4:+14983680 | None:intergenic |
| TGTAAGGATTACAGCTGAAA+AGG | 0.463474 | 5.4:-14975059 | MS.gene67529:CDS |
| CTACCTGTGTGAGATCTAAT+GGG | 0.465753 | 5.4:+14979971 | None:intergenic |
| CTGGTGCTCGGCCATATTCT+GGG | 0.468254 | 5.4:-14981731 | MS.gene67529:CDS |
| GTTGATCCTAACACTAGATT+GGG | 0.468358 | 5.4:-14984067 | MS.gene67529:CDS |
| TGCATTTCTCATGTTGATGT+TGG | 0.470612 | 5.4:-14975004 | MS.gene67529:CDS |
| ATGATAGTTTCAAATTTGCT+TGG | 0.474087 | 5.4:-14979571 | MS.gene67529:CDS |
| GTAACACATTTACAGGCAAC+TGG | 0.475309 | 5.4:-14981750 | MS.gene67529:intron |
| GACACAACTCTAGCCGGATC+AGG | 0.476857 | 5.4:+14977304 | None:intergenic |
| GGAAAAGGAGGTCTTGTAAC+GGG | 0.477542 | 5.4:-14974562 | MS.gene67529:CDS |
| GTAACATGTGTGTGCATGTA+TGG | 0.480970 | 5.4:+14977804 | None:intergenic |
| GTCAACGTGCTTTGCAGGCA+GGG | 0.481293 | 5.4:+14983161 | None:intergenic |
| GGGTTGTTGCGGATCACATC+AGG | 0.482984 | 5.4:-14981665 | MS.gene67529:CDS |
| TTTCAAATTTGCTTGGTTCA+GGG | 0.485471 | 5.4:-14979564 | MS.gene67529:intron |
| TGTCAACGTGCTTTGCAGGC+AGG | 0.486337 | 5.4:+14983160 | None:intergenic |
| TAAGCTGAAAGGAAGTTTGC+TGG | 0.488518 | 5.4:-14976957 | MS.gene67529:CDS |
| GGGAAATGTGGTAAAGGAAA+AGG | 0.489127 | 5.4:-14974577 | MS.gene67529:CDS |
| GCATCAACAAGTTGATTTCG+CGG | 0.490101 | 5.4:+14973861 | None:intergenic |
| AAAACAAACGCAAAGCTGTA+AGG | 0.491618 | 5.4:-14975075 | MS.gene67529:CDS |
| CAACATATAATACCTGAAGT+AGG | 0.491783 | 5.4:+14975268 | None:intergenic |
| CTGAAAGGGAAATGTGGTAA+AGG | 0.493124 | 5.4:-14974583 | MS.gene67529:CDS |
| GAGGAGAGTAGGGTCATTGA+AGG | 0.494575 | 5.4:+14985090 | None:intergenic |
| GTTGATTCTGTTAATACTGA+TGG | 0.494916 | 5.4:-14978832 | MS.gene67529:CDS |
| TGTCTAACCACAGTTCAATA+GGG | 0.495372 | 5.4:-14983205 | MS.gene67529:intron |
| TTGTGACAGCTGTTATTCTA+CGG | 0.496737 | 5.4:+14977044 | None:intergenic |
| TGTCATTTGCCATTGCTGAT+GGG | 0.498811 | 5.4:-14981638 | MS.gene67529:CDS |
| CACGAACTGCTGCAACATCC+AGG | 0.499765 | 5.4:+14974981 | None:intergenic |
| GCTGAGGAGGGAATTGCTAA+AGG | 0.500043 | 5.4:-14977070 | MS.gene67529:CDS |
| GTTAATACTGATGGTGATGT+TGG | 0.502082 | 5.4:-14978823 | MS.gene67529:CDS |
| TGATGAATGCAGGAAGTACT+TGG | 0.502247 | 5.4:-14977690 | MS.gene67529:intron |
| TTCAGGGGAACGTACTGAGC+GGG | 0.503019 | 5.4:-14980568 | MS.gene67529:CDS |
| AGGAGGTCTTGTAACGGGTC+AGG | 0.503180 | 5.4:-14974557 | MS.gene67529:intron |
| TGCTAAGAAAGCTGAAATCA+AGG | 0.509077 | 5.4:-14975301 | MS.gene67529:CDS |
| CTCCGTCGAGCTGTTCGCTA+TGG | 0.511679 | 5.4:-14981163 | MS.gene67529:CDS |
| ATTGCTGATGGGTCTCGTCC+CGG | 0.517780 | 5.4:-14981627 | MS.gene67529:intron |
| GTCTATCCTCACCTTAACTA+AGG | 0.519096 | 5.4:+14980725 | None:intergenic |
| GTGGTAAAAGCAATATATAC+TGG | 0.521169 | 5.4:-14978865 | MS.gene67529:CDS |
| GAACATACTTTACAGCCAAA+GGG | 0.526626 | 5.4:+14983636 | None:intergenic |
| AAGAAGCCATTAGCTGGGCA+TGG | 0.527805 | 5.4:-14983901 | MS.gene67529:CDS |
| TTTGCATAGACTTACGATGT+TGG | 0.529578 | 5.4:-14978143 | MS.gene67529:intron |
| GTATCTCTCACGCGCTTCGC+CGG | 0.533290 | 5.4:+14985172 | None:intergenic |
| AATGCTTTGGGGTTACTGAA+AGG | 0.536153 | 5.4:-14974598 | MS.gene67529:CDS |
| AGGAACCGACATTGAGTGGC+CGG | 0.537230 | 5.4:-14985191 | MS.gene67529:CDS |
| AATTTGAAACTATCATCTGT+TGG | 0.537269 | 5.4:+14979578 | None:intergenic |
| TCCACCTCCAGCGACATGTC+AGG | 0.538701 | 5.4:-14985211 | None:intergenic |
| AGAACATACTTTACAGCCAA+AGG | 0.538832 | 5.4:+14983635 | None:intergenic |
| AACATATAATACCTGAAGTA+GGG | 0.541154 | 5.4:+14975269 | None:intergenic |
| CCTGCAAAGCACGTTGACAC+TGG | 0.543375 | 5.4:-14983156 | MS.gene67529:CDS |
| GAACTTGAAATGAAGCATGT+TGG | 0.543494 | 5.4:+14978108 | None:intergenic |
| AGGAGAGTAGGGTCATTGAA+GGG | 0.545511 | 5.4:+14985091 | None:intergenic |
| CGTTAGCAAAGAGGAGAGTA+GGG | 0.548303 | 5.4:+14985080 | None:intergenic |
| CCAACTGACACAACTCTAGC+CGG | 0.548858 | 5.4:+14977298 | None:intergenic |
| ACCCAGAAGTGCATTCGAGC+TGG | 0.549128 | 5.4:-14984022 | MS.gene67529:CDS |
| CTTCACATTGGTAATGGGAC+TGG | 0.552145 | 5.4:-14978056 | MS.gene67529:CDS |
| TTTGGTGGTGATGATAAAGC+TGG | 0.555876 | 5.4:-14983723 | MS.gene67529:CDS |
| TGTAGTTTGTGCTGGGGTGT+CGG | 0.558316 | 5.4:-14974665 | MS.gene67529:CDS |
| ACAAGGTTGTAGTTTGTGCT+GGG | 0.558406 | 5.4:-14974672 | MS.gene67529:CDS |
| TAAACAGGGGTTATCAGTGA+TGG | 0.558578 | 5.4:-14974719 | MS.gene67529:intron |
| CCGGCTAGAGTTGTGTCAGT+TGG | 0.560215 | 5.4:-14977298 | MS.gene67529:CDS |
| CGACGTATTAAAAGCTGAAG+AGG | 0.562921 | 5.4:-14981137 | MS.gene67529:CDS |
| CTTCGCCGGCCACTCAATGT+CGG | 0.563252 | 5.4:+14985186 | None:intergenic |
| ACAGCTGCGGAACATGTTCA+GGG | 0.563895 | 5.4:-14980584 | MS.gene67529:CDS |
| AATGGGACTGGTATCTCTGT+TGG | 0.564833 | 5.4:-14978044 | MS.gene67529:CDS |
| CATGGCATACAGGGTTGTTG+CGG | 0.565636 | 5.4:-14981676 | MS.gene67529:CDS |
| TCAAAATGAATTTCTGTACA+AGG | 0.566846 | 5.4:+14983451 | None:intergenic |
| CAACTACAAGTTGATGTCGA+AGG | 0.567680 | 5.4:-14979842 | MS.gene67529:CDS |
| CCAAAGGGAAGAACACGTCC+AGG | 0.567955 | 5.4:+14983651 | None:intergenic |
| GCATGTGATTCAAGAGGAGG+AGG | 0.569350 | 5.4:-14980763 | MS.gene67529:CDS |
| GGCAAACATGTATACCAGAA+AGG | 0.569840 | 5.4:-14977669 | MS.gene67529:CDS |
| TCTATTTCATCTGAATTGTG+TGG | 0.570785 | 5.4:-14977226 | MS.gene67529:CDS |
| GAAAGGAAGTTTGCTGGATG+AGG | 0.571178 | 5.4:-14976951 | MS.gene67529:intron |
| TAAAATTGACATGGCATACA+GGG | 0.576644 | 5.4:-14981685 | MS.gene67529:CDS |
| GCCGAAGCCATGCGTATCAA+GGG | 0.577052 | 5.4:-14977431 | MS.gene67529:CDS |
| TGAGCAGCAAGTAGATGAAG+CGG | 0.577455 | 5.4:-14976981 | MS.gene67529:CDS |
| CATAATGTTCAAGTTTATGG+AGG | 0.577824 | 5.4:-14978086 | MS.gene67529:CDS |
| AAGGTTCCATATCTCAAGGC+AGG | 0.578040 | 5.4:+14983378 | None:intergenic |
| TGTCAGGAACCGACATTGAG+TGG | 0.578819 | 5.4:-14985195 | MS.gene67529:CDS |
| CGGCCATATTCTGGGAAAGT+CGG | 0.580129 | 5.4:-14981723 | MS.gene67529:CDS |
| GCTGATCTAGCTGTTAAAGA+TGG | 0.581410 | 5.4:-14975037 | MS.gene67529:CDS |
| AAGCACGTTGACACTGGCAT+GGG | 0.581424 | 5.4:-14983150 | MS.gene67529:CDS |
| AGAAGCCATTAGCTGGGCAT+GGG | 0.583711 | 5.4:-14983900 | MS.gene67529:CDS |
| TATCTCTGGACTCATAGTCA+GGG | 0.584662 | 5.4:+14983694 | None:intergenic |
| CAGGGATTTAAGAGAGCCAT+CGG | 0.586238 | 5.4:+14983179 | None:intergenic |
| GATGAAGCGGCTAAGCTGAA+AGG | 0.587197 | 5.4:-14976968 | MS.gene67529:CDS |
| ATCACGCATAAATGAGGCTA+TGG | 0.587205 | 5.4:-14973905 | MS.gene67529:CDS |
| GTAGCATAAATGTTGTCTGA+TGG | 0.588340 | 5.4:+14983750 | None:intergenic |
| CACTGAGGAATCTACAAACA+AGG | 0.589743 | 5.4:-14974689 | MS.gene67529:CDS |
| AAAGCACGTTGACACTGGCA+TGG | 0.589998 | 5.4:-14983151 | MS.gene67529:CDS |
| AGACAAGGTTCCATATCTCA+AGG | 0.591663 | 5.4:+14983374 | None:intergenic |
| CAAACAAGAAGCCATTAGCT+GGG | 0.592886 | 5.4:-14983906 | MS.gene67529:CDS |
| ATTTACAGGCAACTGGTGCT+CGG | 0.594779 | 5.4:-14981743 | MS.gene67529:intron |
| GGATGCATCACGCATAAATG+AGG | 0.595932 | 5.4:-14973911 | MS.gene67529:CDS |
| CAGAAGTGCATTCGAGCTGG+TGG | 0.598259 | 5.4:-14984019 | MS.gene67529:CDS |
| TTCTGGGAAAGTCGGACCAA+GGG | 0.599667 | 5.4:-14981715 | MS.gene67529:CDS |
| GCATTTCAAAATAAGTGTGA+TGG | 0.601506 | 5.4:+14983957 | None:intergenic |
| AGTGTTGTGGCAAATGTGCT+GGG | 0.603198 | 5.4:-14980828 | MS.gene67529:CDS |
| TTGGATGTAAATGCAAAGGA+GGG | 0.603719 | 5.4:-14977461 | MS.gene67529:CDS |
| ACTCTCCTCTTTGCTAACGC+CGG | 0.603866 | 5.4:-14985076 | MS.gene67529:intron |
| CCGGACCGGCGTTAGCAAAG+AGG | 0.604298 | 5.4:+14985071 | None:intergenic |
| TTTCGTTCTCAGGGTCAGCA+AGG | 0.607814 | 5.4:+14977257 | None:intergenic |
| TGGCAACAAAGTAGTATGCA+AGG | 0.607863 | 5.4:-14978024 | MS.gene67529:intron |
| AGTGGCTGAGTAATGCTTTG+GGG | 0.607999 | 5.4:-14974609 | MS.gene67529:CDS |
| TAACCAAAGATGCGGCATCT+CGG | 0.608647 | 5.4:+14983416 | None:intergenic |
| CCGCAGACCCTTGATACGCA+TGG | 0.609092 | 5.4:+14977424 | None:intergenic |
| GGAGAGTAGGGTCATTGAAG+GGG | 0.610058 | 5.4:+14985092 | None:intergenic |
| GGAGGTTTCGTGCTTCACAT+TGG | 0.619470 | 5.4:-14978068 | MS.gene67529:CDS |
| GTCCATAGCGAACAGCTCGA+CGG | 0.621482 | 5.4:+14981161 | None:intergenic |
| ACAAGCTTCTATGCTGAGCA+AGG | 0.625524 | 5.4:-14978784 | MS.gene67529:CDS |
| AAATGTGGTAAAGGAAAAGG+AGG | 0.625888 | 5.4:-14974574 | MS.gene67529:CDS |
| GGGTTACTGAAAGGGAAATG+TGG | 0.626241 | 5.4:-14974589 | MS.gene67529:CDS |
| ATTGGATGTAAATGCAAAGG+AGG | 0.628352 | 5.4:-14977462 | MS.gene67529:CDS |
| AGTTGGTGATGCTATTGTCA+TGG | 0.628691 | 5.4:-14979642 | MS.gene67529:CDS |
| GTCTTAGGACCATGAGAGTG+TGG | 0.631834 | 5.4:-14978884 | MS.gene67529:intron |
| TCAGGGGAACGTACTGAGCG+GGG | 0.634186 | 5.4:-14980567 | MS.gene67529:CDS |
| GTGTGTGCATGTATGGTTAG+CGG | 0.634249 | 5.4:+14977811 | None:intergenic |
| GGGACGAGACCCATCAGCAA+TGG | 0.635525 | 5.4:+14981629 | None:intergenic |
| GACGTATTAAAAGCTGAAGA+GGG | 0.636943 | 5.4:-14981136 | MS.gene67529:CDS |
| TAGGCATGTGATTCAAGAGG+AGG | 0.642062 | 5.4:-14980766 | MS.gene67529:CDS |
| ATTTCATCTGAATTGTGTGG+CGG | 0.642488 | 5.4:-14977223 | MS.gene67529:intron |
| ATCTCTGGACTCATAGTCAG+GGG | 0.642527 | 5.4:+14983695 | None:intergenic |
| ATTCTGGGAAAGTCGGACCA+AGG | 0.646320 | 5.4:-14981716 | MS.gene67529:CDS |
| CACAACGATCTTGACGACGT+GGG | 0.646477 | 5.4:-14983992 | MS.gene67529:CDS |
| AGGAAAAGGAGGTCTTGTAA+CGG | 0.647670 | 5.4:-14974563 | MS.gene67529:CDS |
| CAGTTCAATAGGGAGGCCGA+TGG | 0.648432 | 5.4:-14983195 | MS.gene67529:CDS |
| TGAATTGGATGTAAATGCAA+AGG | 0.649794 | 5.4:-14977465 | MS.gene67529:CDS |
| GTCGTTATTAACCAAAGATG+CGG | 0.650366 | 5.4:+14983408 | None:intergenic |
| CATTAGGCATGTGATTCAAG+AGG | 0.650394 | 5.4:-14980769 | MS.gene67529:CDS |
| ATGGGTGTCACAGGTCCGTG+TGG | 0.653891 | 5.4:-14983475 | MS.gene67529:CDS |
| TGCGAAATTTAAGACAGCTG+CGG | 0.657375 | 5.4:-14980597 | MS.gene67529:CDS |
| GCACAACGATCTTGACGACG+TGG | 0.662521 | 5.4:-14983993 | MS.gene67529:CDS |
| GGATGTTGCAGCAGTTCGTG+AGG | 0.665110 | 5.4:-14974978 | MS.gene67529:CDS |
| CAAGGTTGTAGTTTGTGCTG+GGG | 0.666393 | 5.4:-14974671 | MS.gene67529:CDS |
| AGGGTCATTGAAGGGGACGA+CGG | 0.669299 | 5.4:+14985099 | None:intergenic |
| GGATGCAGATAAAATTGACA+TGG | 0.670809 | 5.4:-14981694 | MS.gene67529:CDS |
| ATTTCTGTACAAGGTCCACA+CGG | 0.677167 | 5.4:+14983460 | None:intergenic |
| AATCAGGCTTGTAAGTGTTG+TGG | 0.679087 | 5.4:-14980841 | MS.gene67529:intron |
| ACATATTTCAAACACACGAG+AGG | 0.690196 | 5.4:-14977113 | MS.gene67529:CDS |
| AAGGGAAGAACACGTCCAGG+AGG | 0.692145 | 5.4:+14983654 | None:intergenic |
| AAATAACCTGAATAAAGACA+AGG | 0.695023 | 5.4:+14983359 | None:intergenic |
| GGGGAACGTACTGAGCGGGG+AGG | 0.695954 | 5.4:-14980564 | MS.gene67529:intron |
| AGCTTCTATGCTGAGCAAGG+TGG | 0.702055 | 5.4:-14978781 | MS.gene67529:CDS |
| CAGCTGCGGAACATGTTCAG+GGG | 0.706767 | 5.4:-14980583 | MS.gene67529:CDS |
| CTAACCACAGTTCAATAGGG+AGG | 0.709065 | 5.4:-14983202 | MS.gene67529:intron |
| TGGATGTAAATGCAAAGGAG+GGG | 0.709884 | 5.4:-14977460 | MS.gene67529:CDS |
| CCATGCGTATCAAGGGTCTG+CGG | 0.712151 | 5.4:-14977424 | MS.gene67529:CDS |
| GTTCAGGGGAACGTACTGAG+CGG | 0.716267 | 5.4:-14980569 | MS.gene67529:CDS |
| GTAAATTGGATGTATCGCAG+TGG | 0.741009 | 5.4:-14974627 | MS.gene67529:CDS |
| GTTCCCATTAGATCTCACAC+AGG | 0.751225 | 5.4:-14979974 | MS.gene67529:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 14973864 | 14985218 | 14973864 | ID=MS.gene67529 |
| chr5.4 | mRNA | 14973864 | 14985218 | 14973864 | ID=MS.gene67529.t1;Parent=MS.gene67529 |
| chr5.4 | exon | 14985077 | 14985218 | 14985077 | ID=MS.gene67529.t1.exon1;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14985077 | 14985218 | 14985077 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14983886 | 14984124 | 14983886 | ID=MS.gene67529.t1.exon2;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14983886 | 14984124 | 14983886 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14983644 | 14983784 | 14983644 | ID=MS.gene67529.t1.exon3;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14983644 | 14983784 | 14983644 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14983366 | 14983512 | 14983366 | ID=MS.gene67529.t1.exon4;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14983366 | 14983512 | 14983366 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14983062 | 14983214 | 14983062 | ID=MS.gene67529.t1.exon5;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14983062 | 14983214 | 14983062 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14981628 | 14981757 | 14981628 | ID=MS.gene67529.t1.exon6;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14981628 | 14981757 | 14981628 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14981124 | 14981220 | 14981124 | ID=MS.gene67529.t1.exon7;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14981124 | 14981220 | 14981124 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14980737 | 14980857 | 14980737 | ID=MS.gene67529.t1.exon8;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14980737 | 14980857 | 14980737 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14980565 | 14980624 | 14980565 | ID=MS.gene67529.t1.exon9;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14980565 | 14980624 | 14980565 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14979975 | 14980025 | 14979975 | ID=MS.gene67529.t1.exon10;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14979975 | 14980025 | 14979975 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14979787 | 14979882 | 14979787 | ID=MS.gene67529.t1.exon11;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14979787 | 14979882 | 14979787 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14979565 | 14979666 | 14979565 | ID=MS.gene67529.t1.exon12;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14979565 | 14979666 | 14979565 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14978777 | 14978899 | 14978777 | ID=MS.gene67529.t1.exon13;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14978777 | 14978899 | 14978777 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14978025 | 14978156 | 14978025 | ID=MS.gene67529.t1.exon14;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14978025 | 14978156 | 14978025 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14977790 | 14977861 | 14977790 | ID=MS.gene67529.t1.exon15;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14977790 | 14977861 | 14977790 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14977625 | 14977700 | 14977625 | ID=MS.gene67529.t1.exon16;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14977625 | 14977700 | 14977625 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14977409 | 14977551 | 14977409 | ID=MS.gene67529.t1.exon17;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14977409 | 14977551 | 14977409 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14977224 | 14977332 | 14977224 | ID=MS.gene67529.t1.exon18;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14977224 | 14977332 | 14977224 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14976952 | 14977139 | 14976952 | ID=MS.gene67529.t1.exon19;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14976952 | 14977139 | 14976952 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14975281 | 14975370 | 14975281 | ID=MS.gene67529.t1.exon20;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14975281 | 14975370 | 14975281 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14974952 | 14975134 | 14974952 | ID=MS.gene67529.t1.exon21;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14974952 | 14975134 | 14974952 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14974558 | 14974734 | 14974558 | ID=MS.gene67529.t1.exon22;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14974558 | 14974734 | 14974558 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| chr5.4 | exon | 14973864 | 14973938 | 14973864 | ID=MS.gene67529.t1.exon23;Parent=MS.gene67529.t1 |
| chr5.4 | CDS | 14973864 | 14973938 | 14973864 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
| Gene Sequence |
| Protein sequence |