Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67529.t1 | XP_003607217.2 | 89.3 | 948 | 98 | 1 | 1 | 945 | 40 | 987 | 0.00E+00 | 1699.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67529.t1 | P36428 | 72.2 | 947 | 258 | 3 | 4 | 945 | 55 | 1001 | 0.0e+00 | 1404.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67529.t1 | G7JNH3 | 89.3 | 948 | 98 | 1 | 1 | 945 | 1 | 948 | 0.0e+00 | 1699.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene67529 | MS.gene68723 | PPI |
MS.gene67529 | MS.gene014188 | PPI |
MS.gene063074 | MS.gene67529 | PPI |
MS.gene68122 | MS.gene67529 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67529.t1 | MTR_4g074640 | 89.346 | 948 | 98 | 1 | 1 | 945 | 1 | 948 | 0.0 | 1734 |
MS.gene67529.t1 | MTR_4g074670 | 82.276 | 457 | 81 | 0 | 5 | 461 | 8 | 464 | 0.0 | 822 |
MS.gene67529.t1 | MTR_4g074670 | 81.609 | 174 | 32 | 0 | 774 | 947 | 462 | 635 | 4.85e-73 | 253 |
MS.gene67529.t1 | MTR_4g074670 | 79.787 | 282 | 57 | 0 | 180 | 461 | 1 | 282 | 4.17e-162 | 483 |
MS.gene67529.t1 | MTR_4g074670 | 81.609 | 174 | 32 | 0 | 774 | 947 | 280 | 453 | 4.62e-75 | 254 |
MS.gene67529.t1 | MTR_3g118360 | 34.545 | 825 | 448 | 21 | 13 | 804 | 86 | 851 | 1.08e-129 | 412 |
MS.gene67529.t1 | MTR_3g118360 | 34.545 | 825 | 448 | 21 | 13 | 804 | 86 | 851 | 1.13e-129 | 412 |
MS.gene67529.t1 | MTR_3g118360 | 34.038 | 852 | 468 | 22 | 13 | 831 | 86 | 876 | 4.83e-129 | 414 |
MS.gene67529.t1 | MTR_3g118360 | 32.190 | 612 | 343 | 15 | 222 | 802 | 1 | 571 | 2.26e-67 | 239 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67529.t1 | AT1G50200 | 72.228 | 947 | 258 | 3 | 4 | 945 | 55 | 1001 | 0.0 | 1397 |
MS.gene67529.t1 | AT1G50200 | 71.623 | 955 | 258 | 4 | 4 | 945 | 55 | 1009 | 0.0 | 1392 |
MS.gene67529.t1 | AT5G22800 | 35.152 | 825 | 444 | 21 | 13 | 804 | 108 | 874 | 3.76e-135 | 431 |
MS.gene67529.t1 | AT5G22800 | 35.152 | 825 | 444 | 21 | 13 | 804 | 83 | 849 | 7.86e-135 | 429 |
Find 215 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCATAATGTTCAAGTTTA+TGG | 0.095893 | 5.4:-14978089 | MS.gene67529:CDS |
AACATTTATGCTACTTATTT+TGG | 0.136454 | 5.4:-14983741 | MS.gene67529:CDS |
GAAGAACAATAGATCCTTTC+TGG | 0.201321 | 5.4:+14977655 | None:intergenic |
CACCAGCTCGAATGCACTTC+TGG | 0.208889 | 5.4:+14984020 | None:intergenic |
ACTGGTGCTCGGCCATATTC+TGG | 0.216626 | 5.4:-14981732 | MS.gene67529:CDS |
AAGGGTCTGCGGACTGTTTC+TGG | 0.234343 | 5.4:-14977413 | MS.gene67529:CDS |
TCTTTGGTCAGGAAAATTTC+TGG | 0.242948 | 5.4:-14983501 | MS.gene67529:intron |
ATGGAACCTTGTCTTTATTC+AGG | 0.262339 | 5.4:-14983365 | MS.gene67529:intron |
GTTTCAAATTTGCTTGGTTC+AGG | 0.270432 | 5.4:-14979565 | MS.gene67529:CDS |
GACAGCTGCGGAACATGTTC+AGG | 0.278661 | 5.4:-14980585 | MS.gene67529:CDS |
ATGCTGGGCAGCTGGGCTTT+TGG | 0.288927 | 5.4:-14983938 | MS.gene67529:CDS |
TAAAGGAGATAAAGGTAAAT+TGG | 0.291959 | 5.4:-14974641 | MS.gene67529:CDS |
TGCTCTTGATGCAATTAAAA+TGG | 0.295903 | 5.4:-14977014 | MS.gene67529:CDS |
ATCAAGAACTGCTCAAAATA+AGG | 0.306307 | 5.4:-14979786 | MS.gene67529:intron |
CCAGTGTCAACGTGCTTTGC+AGG | 0.310029 | 5.4:+14983156 | None:intergenic |
AATTGACTCAATTCTTCTTA+AGG | 0.321886 | 5.4:+14977508 | None:intergenic |
ATGTATGGTTAGCGGCTATA+AGG | 0.328806 | 5.4:+14977819 | None:intergenic |
CCTACCTGTGTGAGATCTAA+TGG | 0.332388 | 5.4:+14979970 | None:intergenic |
CCTGGACGTGTTCTTCCCTT+TGG | 0.334344 | 5.4:-14983651 | MS.gene67529:CDS |
ATGTCTAACCACAGTTCAAT+AGG | 0.335891 | 5.4:-14983206 | MS.gene67529:intron |
TGGTGATGTTGGTGTAATTC+TGG | 0.341373 | 5.4:-14978812 | MS.gene67529:CDS |
TGAGCAAATTAATGCTGAAT+TGG | 0.344749 | 5.4:-14977480 | MS.gene67529:CDS |
CAGTGGCTGAGTAATGCTTT+GGG | 0.345353 | 5.4:-14974610 | MS.gene67529:CDS |
TCAGGAAAATTTCTGGGAAA+TGG | 0.345759 | 5.4:-14983494 | MS.gene67529:intron |
TAACCGAGATGCCGCATCTT+TGG | 0.349882 | 5.4:-14983419 | MS.gene67529:CDS |
GGTCCGACTTTCCCAGAATA+TGG | 0.356983 | 5.4:+14981720 | None:intergenic |
CTGTCATTTGCCATTGCTGA+TGG | 0.364745 | 5.4:-14981639 | MS.gene67529:CDS |
TGTGCTGGGGTGTCGGATAA+AGG | 0.370284 | 5.4:-14974658 | MS.gene67529:CDS |
CTCTTCGAAGAACTTCAAAA+AGG | 0.370514 | 5.4:+14985150 | None:intergenic |
ATTCAACCTGCCTTGAGATA+TGG | 0.371016 | 5.4:-14983384 | MS.gene67529:CDS |
TTTGAATTGTGGGATACATA+TGG | 0.375692 | 5.4:-14979997 | MS.gene67529:CDS |
TCGTGCTTCACATTGGTAAT+GGG | 0.382910 | 5.4:-14978061 | MS.gene67529:CDS |
AGTTTGCCCAATCTAGTGTT+AGG | 0.386296 | 5.4:+14984061 | None:intergenic |
GCAGTGGCTGAGTAATGCTT+TGG | 0.389443 | 5.4:-14974611 | MS.gene67529:CDS |
AGCAGAATAGCATCGAAAAT+AGG | 0.394070 | 5.4:+14983063 | None:intergenic |
CTTTGGTCAGGAAAATTTCT+GGG | 0.395767 | 5.4:-14983500 | MS.gene67529:intron |
ATAGGTAGCGTTTGAATTGT+GGG | 0.406155 | 5.4:-14980007 | MS.gene67529:intron |
TTCTCATGTTGATGTTGGCC+TGG | 0.406787 | 5.4:-14974999 | MS.gene67529:CDS |
TACCTGAAGTAGGGCTATCT+TGG | 0.407129 | 5.4:+14975278 | None:intergenic |
CAAGAGGAGGAGGAAAGTTT+CGG | 0.410641 | 5.4:-14980753 | MS.gene67529:CDS |
TTCGTGCTTCACATTGGTAA+TGG | 0.413069 | 5.4:-14978062 | MS.gene67529:CDS |
CTTAAGGAATCAGCATCAAC+AGG | 0.414659 | 5.4:+14977524 | None:intergenic |
ATATCTCTGGACTCATAGTC+AGG | 0.418157 | 5.4:+14983693 | None:intergenic |
AACAGCAGCAAGAGCACATT+AGG | 0.421486 | 5.4:-14980785 | MS.gene67529:CDS |
CTATGCTGAGCAAGGTGGTC+AGG | 0.422720 | 5.4:-14978776 | MS.gene67529:intron |
TCAAACAAGAAGCCATTAGC+TGG | 0.426238 | 5.4:-14983907 | MS.gene67529:CDS |
AAGTGTTGTGGCAAATGTGC+TGG | 0.430083 | 5.4:-14980829 | MS.gene67529:CDS |
AACAAGGTTGTAGTTTGTGC+TGG | 0.431318 | 5.4:-14974673 | MS.gene67529:CDS |
TGTTGATCCTAACACTAGAT+TGG | 0.434211 | 5.4:-14984068 | MS.gene67529:CDS |
ATGCTTTGGGGTTACTGAAA+GGG | 0.434727 | 5.4:-14974597 | MS.gene67529:CDS |
ATTTCAGCTTTCTTAGCAGC+AGG | 0.441476 | 5.4:+14975306 | None:intergenic |
AATGTAGGTTTATCCTGATC+CGG | 0.441638 | 5.4:-14977317 | MS.gene67529:intron |
GTGTCGGATAAAGGAGATAA+AGG | 0.442074 | 5.4:-14974649 | MS.gene67529:CDS |
TTGAATTGTGGGATACATAT+GGG | 0.443063 | 5.4:-14979996 | MS.gene67529:CDS |
GGCCAAGATAGCCCTACTTC+AGG | 0.446270 | 5.4:-14975280 | MS.gene67529:intron |
TGTATGGTTAGCGGCTATAA+GGG | 0.450030 | 5.4:+14977820 | None:intergenic |
ACCCTTGATACGCATGGCTT+CGG | 0.450138 | 5.4:+14977430 | None:intergenic |
TTCTGGGAAATGGGTGTCAC+AGG | 0.450449 | 5.4:-14983484 | MS.gene67529:CDS |
TATAGGTAGCGTTTGAATTG+TGG | 0.450971 | 5.4:-14980008 | MS.gene67529:intron |
ACTATGAGTCCAGAGATATA+TGG | 0.451098 | 5.4:-14983689 | MS.gene67529:CDS |
GCGTTAGCAAAGAGGAGAGT+AGG | 0.452058 | 5.4:+14985079 | None:intergenic |
ATAAAATTGACATGGCATAC+AGG | 0.452723 | 5.4:-14981686 | MS.gene67529:CDS |
TTTCGGCAGAACCTTAGTTA+AGG | 0.454210 | 5.4:-14980736 | MS.gene67529:intron |
TGCCGAAGCCATGCGTATCA+AGG | 0.455197 | 5.4:-14977432 | MS.gene67529:CDS |
ACCAGCTCGAATGCACTTCT+GGG | 0.457402 | 5.4:+14984021 | None:intergenic |
AAGTTCCCATGCCCAGCTAA+TGG | 0.458940 | 5.4:+14983895 | None:intergenic |
CAGGAAAATTTCTGGGAAAT+GGG | 0.459057 | 5.4:-14983493 | MS.gene67529:CDS |
AAACTTTAACCATATATCTC+TGG | 0.463052 | 5.4:+14983680 | None:intergenic |
TGTAAGGATTACAGCTGAAA+AGG | 0.463474 | 5.4:-14975059 | MS.gene67529:CDS |
CTACCTGTGTGAGATCTAAT+GGG | 0.465753 | 5.4:+14979971 | None:intergenic |
CTGGTGCTCGGCCATATTCT+GGG | 0.468254 | 5.4:-14981731 | MS.gene67529:CDS |
GTTGATCCTAACACTAGATT+GGG | 0.468358 | 5.4:-14984067 | MS.gene67529:CDS |
TGCATTTCTCATGTTGATGT+TGG | 0.470612 | 5.4:-14975004 | MS.gene67529:CDS |
ATGATAGTTTCAAATTTGCT+TGG | 0.474087 | 5.4:-14979571 | MS.gene67529:CDS |
GTAACACATTTACAGGCAAC+TGG | 0.475309 | 5.4:-14981750 | MS.gene67529:intron |
GACACAACTCTAGCCGGATC+AGG | 0.476857 | 5.4:+14977304 | None:intergenic |
GGAAAAGGAGGTCTTGTAAC+GGG | 0.477542 | 5.4:-14974562 | MS.gene67529:CDS |
GTAACATGTGTGTGCATGTA+TGG | 0.480970 | 5.4:+14977804 | None:intergenic |
GTCAACGTGCTTTGCAGGCA+GGG | 0.481293 | 5.4:+14983161 | None:intergenic |
GGGTTGTTGCGGATCACATC+AGG | 0.482984 | 5.4:-14981665 | MS.gene67529:CDS |
TTTCAAATTTGCTTGGTTCA+GGG | 0.485471 | 5.4:-14979564 | MS.gene67529:intron |
TGTCAACGTGCTTTGCAGGC+AGG | 0.486337 | 5.4:+14983160 | None:intergenic |
TAAGCTGAAAGGAAGTTTGC+TGG | 0.488518 | 5.4:-14976957 | MS.gene67529:CDS |
GGGAAATGTGGTAAAGGAAA+AGG | 0.489127 | 5.4:-14974577 | MS.gene67529:CDS |
GCATCAACAAGTTGATTTCG+CGG | 0.490101 | 5.4:+14973861 | None:intergenic |
AAAACAAACGCAAAGCTGTA+AGG | 0.491618 | 5.4:-14975075 | MS.gene67529:CDS |
CAACATATAATACCTGAAGT+AGG | 0.491783 | 5.4:+14975268 | None:intergenic |
CTGAAAGGGAAATGTGGTAA+AGG | 0.493124 | 5.4:-14974583 | MS.gene67529:CDS |
GAGGAGAGTAGGGTCATTGA+AGG | 0.494575 | 5.4:+14985090 | None:intergenic |
GTTGATTCTGTTAATACTGA+TGG | 0.494916 | 5.4:-14978832 | MS.gene67529:CDS |
TGTCTAACCACAGTTCAATA+GGG | 0.495372 | 5.4:-14983205 | MS.gene67529:intron |
TTGTGACAGCTGTTATTCTA+CGG | 0.496737 | 5.4:+14977044 | None:intergenic |
TGTCATTTGCCATTGCTGAT+GGG | 0.498811 | 5.4:-14981638 | MS.gene67529:CDS |
CACGAACTGCTGCAACATCC+AGG | 0.499765 | 5.4:+14974981 | None:intergenic |
GCTGAGGAGGGAATTGCTAA+AGG | 0.500043 | 5.4:-14977070 | MS.gene67529:CDS |
GTTAATACTGATGGTGATGT+TGG | 0.502082 | 5.4:-14978823 | MS.gene67529:CDS |
TGATGAATGCAGGAAGTACT+TGG | 0.502247 | 5.4:-14977690 | MS.gene67529:intron |
TTCAGGGGAACGTACTGAGC+GGG | 0.503019 | 5.4:-14980568 | MS.gene67529:CDS |
AGGAGGTCTTGTAACGGGTC+AGG | 0.503180 | 5.4:-14974557 | MS.gene67529:intron |
TGCTAAGAAAGCTGAAATCA+AGG | 0.509077 | 5.4:-14975301 | MS.gene67529:CDS |
CTCCGTCGAGCTGTTCGCTA+TGG | 0.511679 | 5.4:-14981163 | MS.gene67529:CDS |
ATTGCTGATGGGTCTCGTCC+CGG | 0.517780 | 5.4:-14981627 | MS.gene67529:intron |
GTCTATCCTCACCTTAACTA+AGG | 0.519096 | 5.4:+14980725 | None:intergenic |
GTGGTAAAAGCAATATATAC+TGG | 0.521169 | 5.4:-14978865 | MS.gene67529:CDS |
GAACATACTTTACAGCCAAA+GGG | 0.526626 | 5.4:+14983636 | None:intergenic |
AAGAAGCCATTAGCTGGGCA+TGG | 0.527805 | 5.4:-14983901 | MS.gene67529:CDS |
TTTGCATAGACTTACGATGT+TGG | 0.529578 | 5.4:-14978143 | MS.gene67529:intron |
GTATCTCTCACGCGCTTCGC+CGG | 0.533290 | 5.4:+14985172 | None:intergenic |
AATGCTTTGGGGTTACTGAA+AGG | 0.536153 | 5.4:-14974598 | MS.gene67529:CDS |
AGGAACCGACATTGAGTGGC+CGG | 0.537230 | 5.4:-14985191 | MS.gene67529:CDS |
AATTTGAAACTATCATCTGT+TGG | 0.537269 | 5.4:+14979578 | None:intergenic |
TCCACCTCCAGCGACATGTC+AGG | 0.538701 | 5.4:-14985211 | None:intergenic |
AGAACATACTTTACAGCCAA+AGG | 0.538832 | 5.4:+14983635 | None:intergenic |
AACATATAATACCTGAAGTA+GGG | 0.541154 | 5.4:+14975269 | None:intergenic |
CCTGCAAAGCACGTTGACAC+TGG | 0.543375 | 5.4:-14983156 | MS.gene67529:CDS |
GAACTTGAAATGAAGCATGT+TGG | 0.543494 | 5.4:+14978108 | None:intergenic |
AGGAGAGTAGGGTCATTGAA+GGG | 0.545511 | 5.4:+14985091 | None:intergenic |
CGTTAGCAAAGAGGAGAGTA+GGG | 0.548303 | 5.4:+14985080 | None:intergenic |
CCAACTGACACAACTCTAGC+CGG | 0.548858 | 5.4:+14977298 | None:intergenic |
ACCCAGAAGTGCATTCGAGC+TGG | 0.549128 | 5.4:-14984022 | MS.gene67529:CDS |
CTTCACATTGGTAATGGGAC+TGG | 0.552145 | 5.4:-14978056 | MS.gene67529:CDS |
TTTGGTGGTGATGATAAAGC+TGG | 0.555876 | 5.4:-14983723 | MS.gene67529:CDS |
TGTAGTTTGTGCTGGGGTGT+CGG | 0.558316 | 5.4:-14974665 | MS.gene67529:CDS |
ACAAGGTTGTAGTTTGTGCT+GGG | 0.558406 | 5.4:-14974672 | MS.gene67529:CDS |
TAAACAGGGGTTATCAGTGA+TGG | 0.558578 | 5.4:-14974719 | MS.gene67529:intron |
CCGGCTAGAGTTGTGTCAGT+TGG | 0.560215 | 5.4:-14977298 | MS.gene67529:CDS |
CGACGTATTAAAAGCTGAAG+AGG | 0.562921 | 5.4:-14981137 | MS.gene67529:CDS |
CTTCGCCGGCCACTCAATGT+CGG | 0.563252 | 5.4:+14985186 | None:intergenic |
ACAGCTGCGGAACATGTTCA+GGG | 0.563895 | 5.4:-14980584 | MS.gene67529:CDS |
AATGGGACTGGTATCTCTGT+TGG | 0.564833 | 5.4:-14978044 | MS.gene67529:CDS |
CATGGCATACAGGGTTGTTG+CGG | 0.565636 | 5.4:-14981676 | MS.gene67529:CDS |
TCAAAATGAATTTCTGTACA+AGG | 0.566846 | 5.4:+14983451 | None:intergenic |
CAACTACAAGTTGATGTCGA+AGG | 0.567680 | 5.4:-14979842 | MS.gene67529:CDS |
CCAAAGGGAAGAACACGTCC+AGG | 0.567955 | 5.4:+14983651 | None:intergenic |
GCATGTGATTCAAGAGGAGG+AGG | 0.569350 | 5.4:-14980763 | MS.gene67529:CDS |
GGCAAACATGTATACCAGAA+AGG | 0.569840 | 5.4:-14977669 | MS.gene67529:CDS |
TCTATTTCATCTGAATTGTG+TGG | 0.570785 | 5.4:-14977226 | MS.gene67529:CDS |
GAAAGGAAGTTTGCTGGATG+AGG | 0.571178 | 5.4:-14976951 | MS.gene67529:intron |
TAAAATTGACATGGCATACA+GGG | 0.576644 | 5.4:-14981685 | MS.gene67529:CDS |
GCCGAAGCCATGCGTATCAA+GGG | 0.577052 | 5.4:-14977431 | MS.gene67529:CDS |
TGAGCAGCAAGTAGATGAAG+CGG | 0.577455 | 5.4:-14976981 | MS.gene67529:CDS |
CATAATGTTCAAGTTTATGG+AGG | 0.577824 | 5.4:-14978086 | MS.gene67529:CDS |
AAGGTTCCATATCTCAAGGC+AGG | 0.578040 | 5.4:+14983378 | None:intergenic |
TGTCAGGAACCGACATTGAG+TGG | 0.578819 | 5.4:-14985195 | MS.gene67529:CDS |
CGGCCATATTCTGGGAAAGT+CGG | 0.580129 | 5.4:-14981723 | MS.gene67529:CDS |
GCTGATCTAGCTGTTAAAGA+TGG | 0.581410 | 5.4:-14975037 | MS.gene67529:CDS |
AAGCACGTTGACACTGGCAT+GGG | 0.581424 | 5.4:-14983150 | MS.gene67529:CDS |
AGAAGCCATTAGCTGGGCAT+GGG | 0.583711 | 5.4:-14983900 | MS.gene67529:CDS |
TATCTCTGGACTCATAGTCA+GGG | 0.584662 | 5.4:+14983694 | None:intergenic |
CAGGGATTTAAGAGAGCCAT+CGG | 0.586238 | 5.4:+14983179 | None:intergenic |
GATGAAGCGGCTAAGCTGAA+AGG | 0.587197 | 5.4:-14976968 | MS.gene67529:CDS |
ATCACGCATAAATGAGGCTA+TGG | 0.587205 | 5.4:-14973905 | MS.gene67529:CDS |
GTAGCATAAATGTTGTCTGA+TGG | 0.588340 | 5.4:+14983750 | None:intergenic |
CACTGAGGAATCTACAAACA+AGG | 0.589743 | 5.4:-14974689 | MS.gene67529:CDS |
AAAGCACGTTGACACTGGCA+TGG | 0.589998 | 5.4:-14983151 | MS.gene67529:CDS |
AGACAAGGTTCCATATCTCA+AGG | 0.591663 | 5.4:+14983374 | None:intergenic |
CAAACAAGAAGCCATTAGCT+GGG | 0.592886 | 5.4:-14983906 | MS.gene67529:CDS |
ATTTACAGGCAACTGGTGCT+CGG | 0.594779 | 5.4:-14981743 | MS.gene67529:intron |
GGATGCATCACGCATAAATG+AGG | 0.595932 | 5.4:-14973911 | MS.gene67529:CDS |
CAGAAGTGCATTCGAGCTGG+TGG | 0.598259 | 5.4:-14984019 | MS.gene67529:CDS |
TTCTGGGAAAGTCGGACCAA+GGG | 0.599667 | 5.4:-14981715 | MS.gene67529:CDS |
GCATTTCAAAATAAGTGTGA+TGG | 0.601506 | 5.4:+14983957 | None:intergenic |
AGTGTTGTGGCAAATGTGCT+GGG | 0.603198 | 5.4:-14980828 | MS.gene67529:CDS |
TTGGATGTAAATGCAAAGGA+GGG | 0.603719 | 5.4:-14977461 | MS.gene67529:CDS |
ACTCTCCTCTTTGCTAACGC+CGG | 0.603866 | 5.4:-14985076 | MS.gene67529:intron |
CCGGACCGGCGTTAGCAAAG+AGG | 0.604298 | 5.4:+14985071 | None:intergenic |
TTTCGTTCTCAGGGTCAGCA+AGG | 0.607814 | 5.4:+14977257 | None:intergenic |
TGGCAACAAAGTAGTATGCA+AGG | 0.607863 | 5.4:-14978024 | MS.gene67529:intron |
AGTGGCTGAGTAATGCTTTG+GGG | 0.607999 | 5.4:-14974609 | MS.gene67529:CDS |
TAACCAAAGATGCGGCATCT+CGG | 0.608647 | 5.4:+14983416 | None:intergenic |
CCGCAGACCCTTGATACGCA+TGG | 0.609092 | 5.4:+14977424 | None:intergenic |
GGAGAGTAGGGTCATTGAAG+GGG | 0.610058 | 5.4:+14985092 | None:intergenic |
GGAGGTTTCGTGCTTCACAT+TGG | 0.619470 | 5.4:-14978068 | MS.gene67529:CDS |
GTCCATAGCGAACAGCTCGA+CGG | 0.621482 | 5.4:+14981161 | None:intergenic |
ACAAGCTTCTATGCTGAGCA+AGG | 0.625524 | 5.4:-14978784 | MS.gene67529:CDS |
AAATGTGGTAAAGGAAAAGG+AGG | 0.625888 | 5.4:-14974574 | MS.gene67529:CDS |
GGGTTACTGAAAGGGAAATG+TGG | 0.626241 | 5.4:-14974589 | MS.gene67529:CDS |
ATTGGATGTAAATGCAAAGG+AGG | 0.628352 | 5.4:-14977462 | MS.gene67529:CDS |
AGTTGGTGATGCTATTGTCA+TGG | 0.628691 | 5.4:-14979642 | MS.gene67529:CDS |
GTCTTAGGACCATGAGAGTG+TGG | 0.631834 | 5.4:-14978884 | MS.gene67529:intron |
TCAGGGGAACGTACTGAGCG+GGG | 0.634186 | 5.4:-14980567 | MS.gene67529:CDS |
GTGTGTGCATGTATGGTTAG+CGG | 0.634249 | 5.4:+14977811 | None:intergenic |
GGGACGAGACCCATCAGCAA+TGG | 0.635525 | 5.4:+14981629 | None:intergenic |
GACGTATTAAAAGCTGAAGA+GGG | 0.636943 | 5.4:-14981136 | MS.gene67529:CDS |
TAGGCATGTGATTCAAGAGG+AGG | 0.642062 | 5.4:-14980766 | MS.gene67529:CDS |
ATTTCATCTGAATTGTGTGG+CGG | 0.642488 | 5.4:-14977223 | MS.gene67529:intron |
ATCTCTGGACTCATAGTCAG+GGG | 0.642527 | 5.4:+14983695 | None:intergenic |
ATTCTGGGAAAGTCGGACCA+AGG | 0.646320 | 5.4:-14981716 | MS.gene67529:CDS |
CACAACGATCTTGACGACGT+GGG | 0.646477 | 5.4:-14983992 | MS.gene67529:CDS |
AGGAAAAGGAGGTCTTGTAA+CGG | 0.647670 | 5.4:-14974563 | MS.gene67529:CDS |
CAGTTCAATAGGGAGGCCGA+TGG | 0.648432 | 5.4:-14983195 | MS.gene67529:CDS |
TGAATTGGATGTAAATGCAA+AGG | 0.649794 | 5.4:-14977465 | MS.gene67529:CDS |
GTCGTTATTAACCAAAGATG+CGG | 0.650366 | 5.4:+14983408 | None:intergenic |
CATTAGGCATGTGATTCAAG+AGG | 0.650394 | 5.4:-14980769 | MS.gene67529:CDS |
ATGGGTGTCACAGGTCCGTG+TGG | 0.653891 | 5.4:-14983475 | MS.gene67529:CDS |
TGCGAAATTTAAGACAGCTG+CGG | 0.657375 | 5.4:-14980597 | MS.gene67529:CDS |
GCACAACGATCTTGACGACG+TGG | 0.662521 | 5.4:-14983993 | MS.gene67529:CDS |
GGATGTTGCAGCAGTTCGTG+AGG | 0.665110 | 5.4:-14974978 | MS.gene67529:CDS |
CAAGGTTGTAGTTTGTGCTG+GGG | 0.666393 | 5.4:-14974671 | MS.gene67529:CDS |
AGGGTCATTGAAGGGGACGA+CGG | 0.669299 | 5.4:+14985099 | None:intergenic |
GGATGCAGATAAAATTGACA+TGG | 0.670809 | 5.4:-14981694 | MS.gene67529:CDS |
ATTTCTGTACAAGGTCCACA+CGG | 0.677167 | 5.4:+14983460 | None:intergenic |
AATCAGGCTTGTAAGTGTTG+TGG | 0.679087 | 5.4:-14980841 | MS.gene67529:intron |
ACATATTTCAAACACACGAG+AGG | 0.690196 | 5.4:-14977113 | MS.gene67529:CDS |
AAGGGAAGAACACGTCCAGG+AGG | 0.692145 | 5.4:+14983654 | None:intergenic |
AAATAACCTGAATAAAGACA+AGG | 0.695023 | 5.4:+14983359 | None:intergenic |
GGGGAACGTACTGAGCGGGG+AGG | 0.695954 | 5.4:-14980564 | MS.gene67529:intron |
AGCTTCTATGCTGAGCAAGG+TGG | 0.702055 | 5.4:-14978781 | MS.gene67529:CDS |
CAGCTGCGGAACATGTTCAG+GGG | 0.706767 | 5.4:-14980583 | MS.gene67529:CDS |
CTAACCACAGTTCAATAGGG+AGG | 0.709065 | 5.4:-14983202 | MS.gene67529:intron |
TGGATGTAAATGCAAAGGAG+GGG | 0.709884 | 5.4:-14977460 | MS.gene67529:CDS |
CCATGCGTATCAAGGGTCTG+CGG | 0.712151 | 5.4:-14977424 | MS.gene67529:CDS |
GTTCAGGGGAACGTACTGAG+CGG | 0.716267 | 5.4:-14980569 | MS.gene67529:CDS |
GTAAATTGGATGTATCGCAG+TGG | 0.741009 | 5.4:-14974627 | MS.gene67529:CDS |
GTTCCCATTAGATCTCACAC+AGG | 0.751225 | 5.4:-14979974 | MS.gene67529:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 14973864 | 14985218 | 14973864 | ID=MS.gene67529 |
chr5.4 | mRNA | 14973864 | 14985218 | 14973864 | ID=MS.gene67529.t1;Parent=MS.gene67529 |
chr5.4 | exon | 14985077 | 14985218 | 14985077 | ID=MS.gene67529.t1.exon1;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14985077 | 14985218 | 14985077 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14983886 | 14984124 | 14983886 | ID=MS.gene67529.t1.exon2;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14983886 | 14984124 | 14983886 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14983644 | 14983784 | 14983644 | ID=MS.gene67529.t1.exon3;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14983644 | 14983784 | 14983644 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14983366 | 14983512 | 14983366 | ID=MS.gene67529.t1.exon4;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14983366 | 14983512 | 14983366 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14983062 | 14983214 | 14983062 | ID=MS.gene67529.t1.exon5;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14983062 | 14983214 | 14983062 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14981628 | 14981757 | 14981628 | ID=MS.gene67529.t1.exon6;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14981628 | 14981757 | 14981628 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14981124 | 14981220 | 14981124 | ID=MS.gene67529.t1.exon7;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14981124 | 14981220 | 14981124 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14980737 | 14980857 | 14980737 | ID=MS.gene67529.t1.exon8;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14980737 | 14980857 | 14980737 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14980565 | 14980624 | 14980565 | ID=MS.gene67529.t1.exon9;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14980565 | 14980624 | 14980565 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14979975 | 14980025 | 14979975 | ID=MS.gene67529.t1.exon10;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14979975 | 14980025 | 14979975 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14979787 | 14979882 | 14979787 | ID=MS.gene67529.t1.exon11;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14979787 | 14979882 | 14979787 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14979565 | 14979666 | 14979565 | ID=MS.gene67529.t1.exon12;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14979565 | 14979666 | 14979565 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14978777 | 14978899 | 14978777 | ID=MS.gene67529.t1.exon13;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14978777 | 14978899 | 14978777 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14978025 | 14978156 | 14978025 | ID=MS.gene67529.t1.exon14;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14978025 | 14978156 | 14978025 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14977790 | 14977861 | 14977790 | ID=MS.gene67529.t1.exon15;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14977790 | 14977861 | 14977790 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14977625 | 14977700 | 14977625 | ID=MS.gene67529.t1.exon16;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14977625 | 14977700 | 14977625 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14977409 | 14977551 | 14977409 | ID=MS.gene67529.t1.exon17;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14977409 | 14977551 | 14977409 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14977224 | 14977332 | 14977224 | ID=MS.gene67529.t1.exon18;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14977224 | 14977332 | 14977224 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14976952 | 14977139 | 14976952 | ID=MS.gene67529.t1.exon19;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14976952 | 14977139 | 14976952 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14975281 | 14975370 | 14975281 | ID=MS.gene67529.t1.exon20;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14975281 | 14975370 | 14975281 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14974952 | 14975134 | 14974952 | ID=MS.gene67529.t1.exon21;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14974952 | 14975134 | 14974952 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14974558 | 14974734 | 14974558 | ID=MS.gene67529.t1.exon22;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14974558 | 14974734 | 14974558 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
chr5.4 | exon | 14973864 | 14973938 | 14973864 | ID=MS.gene67529.t1.exon23;Parent=MS.gene67529.t1 |
chr5.4 | CDS | 14973864 | 14973938 | 14973864 | ID=cds.MS.gene67529.t1;Parent=MS.gene67529.t1 |
Gene Sequence |
Protein sequence |