Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68226.t1 | XP_003603905.1 | 90.6 | 106 | 10 | 0 | 1 | 106 | 1 | 106 | 3.20E-45 | 192.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68226.t1 | P17771 | 65.1 | 63 | 22 | 0 | 1 | 63 | 4 | 66 | 3.4e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68226.t1 | G7J6J7 | 90.6 | 106 | 10 | 0 | 1 | 106 | 1 | 106 | 2.3e-45 | 192.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04921 | MS.gene68226 | 0.802022 | 6.83E-49 | -1.69E-46 |
| MS.gene04932 | MS.gene68226 | 0.801259 | 9.80E-49 | -1.69E-46 |
| MS.gene050338 | MS.gene68226 | 0.823278 | 1.51E-53 | -1.69E-46 |
| MS.gene056694 | MS.gene68226 | 0.824756 | 6.79E-54 | -1.69E-46 |
| MS.gene056697 | MS.gene68226 | 0.834625 | 2.69E-56 | -1.69E-46 |
| MS.gene058382 | MS.gene68226 | 0.820806 | 5.65E-53 | -1.69E-46 |
| MS.gene05926 | MS.gene68226 | 0.829315 | 5.51E-55 | -1.69E-46 |
| MS.gene061044 | MS.gene68226 | 0.82175 | 3.42E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68226.t1 | MTR_3g116440 | 84.857 | 350 | 44 | 3 | 16 | 362 | 16 | 359 | 0.0 | 547 |
| MS.gene68226.t1 | MTR_3g034610 | 63.920 | 352 | 104 | 3 | 33 | 361 | 1 | 352 | 1.31e-140 | 405 |
| MS.gene68226.t1 | MTR_3g034610 | 68.551 | 283 | 83 | 2 | 85 | 361 | 122 | 404 | 1.86e-127 | 372 |
| MS.gene68226.t1 | MTR_3g034640 | 52.357 | 403 | 128 | 5 | 16 | 360 | 16 | 412 | 1.45e-120 | 357 |
| MS.gene68226.t1 | MTR_3g034640 | 61.290 | 279 | 102 | 2 | 88 | 360 | 186 | 464 | 2.52e-107 | 323 |
| MS.gene68226.t1 | MTR_3g034640 | 55.763 | 321 | 129 | 5 | 46 | 360 | 177 | 490 | 1.18e-105 | 319 |
| MS.gene68226.t1 | MTR_3g034640 | 59.470 | 264 | 105 | 1 | 79 | 340 | 229 | 492 | 6.14e-98 | 299 |
| MS.gene68226.t1 | MTR_3g034640 | 54.639 | 97 | 40 | 1 | 269 | 361 | 57 | 153 | 1.91e-20 | 92.8 |
| MS.gene68226.t1 | MTR_3g116430 | 56.919 | 383 | 138 | 6 | 1 | 360 | 1 | 379 | 4.37e-120 | 354 |
| MS.gene68226.t1 | MTR_3g116430 | 57.308 | 260 | 108 | 2 | 79 | 337 | 173 | 430 | 1.70e-86 | 268 |
| MS.gene68226.t1 | MTR_3g116430 | 42.379 | 269 | 122 | 4 | 20 | 259 | 166 | 430 | 1.47e-51 | 177 |
| MS.gene68226.t1 | MTR_3g107810 | 48.857 | 350 | 157 | 4 | 17 | 360 | 17 | 350 | 5.73e-96 | 294 |
| MS.gene68226.t1 | MTR_3g107810 | 48.592 | 284 | 140 | 2 | 85 | 362 | 147 | 430 | 4.96e-77 | 245 |
| MS.gene68226.t1 | MTR_3g107810 | 48.571 | 280 | 142 | 2 | 85 | 362 | 199 | 478 | 1.56e-76 | 244 |
| MS.gene68226.t1 | MTR_4g069810 | 36.134 | 357 | 196 | 15 | 18 | 362 | 19 | 355 | 6.03e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGTTCAAAATCTTTAT+TGG | 0.220637 | 3.4:-99285098 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 3.4:-99285176 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 3.4:-99285254 | None:intergenic |
| AGACCTAACATTTCAGCTTA+TGG | 0.239620 | 3.4:+99285430 | MS.gene68226:CDS |
| AGACCTAATGTTTCAGCTTA+TGG | 0.247713 | 3.4:+99284806 | MS.gene68226:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3.4:+99284884 | MS.gene68226:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3.4:+99285040 | MS.gene68226:CDS |
| TGTAGAATCAAGAAAAGATT+TGG | 0.250935 | 3.4:+99284490 | MS.gene68226:CDS |
| GACCTAACATTTCAGCTTAT+GGG | 0.310475 | 3.4:+99285431 | MS.gene68226:CDS |
| AGGTCTTGGTTCAAAATCTT+TGG | 0.310679 | 3.4:-99285413 | None:intergenic |
| CATTTATGCATCATATTTAG+TGG | 0.320826 | 3.4:-99285506 | None:intergenic |
| GTTCCATAAGCTGAAACATT+AGG | 0.327800 | 3.4:-99284809 | None:intergenic |
| AAACAATTACATTGATGTTA+TGG | 0.330758 | 3.4:+99285375 | MS.gene68226:CDS |
| ATATTTAGTGGCACTTGGTC+GGG | 0.347002 | 3.4:-99285494 | None:intergenic |
| AGACAATGGTATTGATGTTA+AGG | 0.374733 | 3.4:+99285219 | MS.gene68226:CDS |
| AGACAATCGTGTTGAAGTTA+AGG | 0.379767 | 3.4:+99284985 | MS.gene68226:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | 3.4:+99285063 | MS.gene68226:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 3.4:+99285073 | MS.gene68226:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 3.4:+99285229 | MS.gene68226:CDS |
| AGACCCAATGTTTCAGCATA+TGG | 0.405735 | 3.4:+99285274 | MS.gene68226:CDS |
| ATGAATGATGTCATTGTCTA+TGG | 0.405969 | 3.4:-99284672 | None:intergenic |
| ATTGATGTTACAGAAAATAA+AGG | 0.415243 | 3.4:+99285151 | MS.gene68226:CDS |
| GTCTCTATAAGCTGAAACAT+TGG | 0.417031 | 3.4:-99285200 | None:intergenic |
| ACACCCAATGTTTCAGCATA+TGG | 0.418154 | 3.4:+99284962 | MS.gene68226:CDS |
| TCTCCATATGCTGAAATGTT+TGG | 0.423109 | 3.4:-99285121 | None:intergenic |
| GTAGAATCAAGAAAAGATTT+GGG | 0.427549 | 3.4:+99284491 | MS.gene68226:CDS |
| TATGCTGAAACATTGGGTCT+TGG | 0.433141 | 3.4:-99285349 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.435355 | 3.4:-99285037 | None:intergenic |
| TATGCTGAAATGTTTGGTCT+TGG | 0.439257 | 3.4:-99285115 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.441462 | 3.4:-99285193 | None:intergenic |
| GACAATCGTGTTGAAGTTAA+GGG | 0.442091 | 3.4:+99284986 | MS.gene68226:CDS |
| AGACCAAACATTTCAGCATA+TGG | 0.445583 | 3.4:+99285118 | MS.gene68226:CDS |
| CATATTTAGTGGCACTTGGT+CGG | 0.446372 | 3.4:-99285495 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.449066 | 3.4:-99285278 | None:intergenic |
| TAAGCTGAAATGTTAGGTCT+TGG | 0.458122 | 3.4:-99285427 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | 3.4:-99284881 | None:intergenic |
| TATGAAGATAATAACATTGA+GGG | 0.464536 | 3.4:+99284752 | MS.gene68226:CDS |
| AAACCTTTGAAAGACTGCTT+CGG | 0.465281 | 3.4:-99284605 | None:intergenic |
| ATTCATGCTAAGAGAAAGAA+AGG | 0.472696 | 3.4:+99284689 | MS.gene68226:CDS |
| TATGCTGAAACATTGGGTCT+TGG | 0.475638 | 3.4:-99285271 | None:intergenic |
| TCTCCATATGCTGAAACATT+GGG | 0.476305 | 3.4:-99285277 | None:intergenic |
| AACAAATGAAATTGATGCTA+AGG | 0.478202 | 3.4:+99284829 | MS.gene68226:CDS |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3.4:-99284888 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3.4:-99285044 | None:intergenic |
| TCCCCATAAGCTGAAATGTT+AGG | 0.487972 | 3.4:-99285433 | None:intergenic |
| TCTCTATAAGCTGAAACATT+GGG | 0.495890 | 3.4:-99285199 | None:intergenic |
| TATTTAGTGGCACTTGGTCG+GGG | 0.498218 | 3.4:-99285493 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3.4:-99284887 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3.4:-99285043 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.510420 | 3.4:-99284966 | None:intergenic |
| GCATCATATTTAGTGGCACT+TGG | 0.527772 | 3.4:-99285499 | None:intergenic |
| AATTGATGCTAAGGAAAAGA+AGG | 0.533314 | 3.4:+99284838 | MS.gene68226:CDS |
| AGGGGCAACAAAGCAAGAGC+AGG | 0.535358 | 3.4:-99282405 | None:intergenic |
| ACTCCGAAGCAGTCTTTCAA+AGG | 0.542773 | 3.4:+99284602 | MS.gene68226:CDS |
| TCTCCATATGCTGAAACATT+GGG | 0.551421 | 3.4:-99284965 | None:intergenic |
| ACCTAACATTTCAGCTTATG+GGG | 0.562671 | 3.4:+99285432 | MS.gene68226:CDS |
| GACATGCGAAAAGAAATTCA+AGG | 0.567894 | 3.4:+99284545 | MS.gene68226:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | 3.4:+99285049 | MS.gene68226:CDS |
| ATATGAAGATAATAACATTG+AGG | 0.587671 | 3.4:+99284751 | MS.gene68226:CDS |
| GTTTCAGCTTATAGAGACAA+TGG | 0.591997 | 3.4:+99285205 | MS.gene68226:CDS |
| TATGCTGAAACATTGGGTGT+TGG | 0.621863 | 3.4:-99284959 | None:intergenic |
| ACATGCGAAAAGAAATTCAA+GGG | 0.625015 | 3.4:+99284546 | MS.gene68226:CDS |
| TATTGATGTTGAATTCACAA+AGG | 0.628277 | 3.4:+99285462 | MS.gene68226:CDS |
| ACTTGTGTGTCTATTACAAG+TGG | 0.633990 | 3.4:-99284647 | None:intergenic |
| ACATACCAAGAAAAGCAAGA+GGG | 0.652569 | 3.4:-99282424 | None:intergenic |
| CATACCAAGAAAAGCAAGAG+GGG | 0.655694 | 3.4:-99282423 | None:intergenic |
| AACATACCAAGAAAAGCAAG+AGG | 0.668669 | 3.4:-99282425 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATAATTATATTTA+AGG | - | chr3.4:99283422-99283441 | None:intergenic | 0.0% |
| !! | AATATATACCTATATATAAA+GGG | - | chr3.4:99283166-99283185 | None:intergenic | 10.0% |
| !! | AATGTAAAATCTTATTATAA+TGG | - | chr3.4:99283220-99283239 | None:intergenic | 10.0% |
| !! | AATTAAATGTAAAATATAAG+AGG | - | chr3.4:99282501-99282520 | None:intergenic | 10.0% |
| !!! | AAGATTTAAAAATGATTTTA+TGG | - | chr3.4:99282600-99282619 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTATTTTGCTAT+TGG | - | chr3.4:99283552-99283571 | None:intergenic | 10.0% |
| !! | AAATAAAATCTTCATCTAAT+TGG | - | chr3.4:99282751-99282770 | None:intergenic | 15.0% |
| !! | AATAAAATCTTCATCTAATT+GGG | - | chr3.4:99282750-99282769 | None:intergenic | 15.0% |
| !! | ATATATACCTATATATAAAG+GGG | - | chr3.4:99283165-99283184 | None:intergenic | 15.0% |
| !! | CAATATATACCTATATATAA+AGG | - | chr3.4:99283167-99283186 | None:intergenic | 15.0% |
| !! | CTTAAAAAAATATCTCAATT+AGG | + | chr3.4:99283813-99283832 | MS.gene68226:intron | 15.0% |
| !!! | AAACTTTTAATTAAGAAAGT+TGG | - | chr3.4:99283050-99283069 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTAAATCAAAAA+CGG | - | chr3.4:99283377-99283396 | None:intergenic | 15.0% |
| !!! | CTAATTGAGATATTTTTTTA+AGG | - | chr3.4:99283815-99283834 | None:intergenic | 15.0% |
| !! | AAACAATTACATTGATGTTA+TGG | + | chr3.4:99285375-99285394 | MS.gene68226:CDS | 20.0% |
| !! | AATTTATTTCCTAACCAAAA+AGG | - | chr3.4:99284350-99284369 | None:intergenic | 20.0% |
| !! | ATAAATTGGATCCTAAAATT+TGG | - | chr3.4:99283996-99284015 | None:intergenic | 20.0% |
| !! | ATAATCACTAACATCAAAAT+GGG | + | chr3.4:99282642-99282661 | MS.gene68226:intron | 20.0% |
| !! | ATATGAAGATAATAACATTG+AGG | + | chr3.4:99284751-99284770 | MS.gene68226:CDS | 20.0% |
| !! | ATTGATGTTAAGGAAAATAA+AGG | + | chr3.4:99285073-99285092 | MS.gene68226:CDS | 20.0% |
| !! | ATTGATGTTACAGAAAATAA+AGG | + | chr3.4:99285151-99285170 | MS.gene68226:CDS | 20.0% |
| !! | TAAGACATAAGAAAAAGTAA+TGG | - | chr3.4:99284435-99284454 | None:intergenic | 20.0% |
| !! | TAATAAGAATAGTTAACGAA+GGG | + | chr3.4:99283100-99283119 | MS.gene68226:intron | 20.0% |
| !! | TACTTCAAGAATATTAGATA+TGG | - | chr3.4:99283865-99283884 | None:intergenic | 20.0% |
| !! | TATAATCACTAACATCAAAA+TGG | + | chr3.4:99282641-99282660 | MS.gene68226:intron | 20.0% |
| !! | TATCTTCTAATTATACCATT+CGG | - | chr3.4:99282894-99282913 | None:intergenic | 20.0% |
| !! | TATGAAGATAATAACATTGA+GGG | + | chr3.4:99284752-99284771 | MS.gene68226:CDS | 20.0% |
| !! | TATTAGGATACAAGTTAATA+TGG | + | chr3.4:99284013-99284032 | MS.gene68226:intron | 20.0% |
| !! | TTATATTGTTCATATTGAAG+TGG | + | chr3.4:99282769-99282788 | MS.gene68226:intron | 20.0% |
| !!! | ATCTTCATATTTTGAAACAT+TGG | - | chr3.4:99284741-99284760 | None:intergenic | 20.0% |
| !!! | ATTTTAGGATCCAATTTATT+AGG | + | chr3.4:99283997-99284016 | MS.gene68226:intron | 20.0% |
| !!! | GTTGAATCTTTATTTAATTG+TGG | - | chr3.4:99282974-99282993 | None:intergenic | 20.0% |
| !!! | TAACTTGTATCCTAATAAAT+TGG | - | chr3.4:99284010-99284029 | None:intergenic | 20.0% |
| !!! | TCTTCATATTTTGAAACATT+GGG | - | chr3.4:99284740-99284759 | None:intergenic | 20.0% |
| !!! | TTGAACAATTATTTTCTTGT+TGG | + | chr3.4:99282519-99282538 | MS.gene68226:intron | 20.0% |
| ! | AACAAATGAAATTGATGCTA+AGG | + | chr3.4:99284829-99284848 | MS.gene68226:CDS | 25.0% |
| ! | AGGAAAAAACACTCATAATT+AGG | - | chr3.4:99284330-99284349 | None:intergenic | 25.0% |
| ! | ATTAGAATAGTTTAACCGAA+TGG | + | chr3.4:99282876-99282895 | MS.gene68226:intron | 25.0% |
| ! | CATATATCCCCTTTATATAT+AGG | + | chr3.4:99283155-99283174 | MS.gene68226:intron | 25.0% |
| ! | GGAAAAAACACTCATAATTA+GGG | - | chr3.4:99284329-99284348 | None:intergenic | 25.0% |
| ! | GTAATAAGAATAGTTAACGA+AGG | + | chr3.4:99283099-99283118 | MS.gene68226:intron | 25.0% |
| ! | GTAGAATCAAGAAAAGATTT+GGG | + | chr3.4:99284491-99284510 | MS.gene68226:CDS | 25.0% |
| ! | TATTGATGCTAAGAAAAAGA+AGG | + | chr3.4:99284916-99284935 | MS.gene68226:CDS | 25.0% |
| ! | TATTGATGTTGAATTCACAA+AGG | + | chr3.4:99285462-99285481 | MS.gene68226:CDS | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | - | chr3.4:99285101-99285120 | None:intergenic | 25.0% |
| ! | TGTAGAATCAAGAAAAGATT+TGG | + | chr3.4:99284490-99284509 | MS.gene68226:CDS | 25.0% |
| ! | TTAGGTAGATTAATCTTAAG+TGG | - | chr3.4:99283716-99283735 | None:intergenic | 25.0% |
| !! | TAAAGGGGATATATGATTTT+AGG | - | chr3.4:99283150-99283169 | None:intergenic | 25.0% |
| !! | TCAACGATTTTCCAAATTTT+AGG | + | chr3.4:99283982-99284001 | MS.gene68226:intron | 25.0% |
| !! | TTTTCATATGCTGAAACATT+GGG | - | chr3.4:99285358-99285377 | None:intergenic | 25.0% |
| !!! | TATGAGTGTTTTTTCCTTTT+TGG | + | chr3.4:99284333-99284352 | MS.gene68226:intron | 25.0% |
| !!! | TTTTTATTTTGCTATTGGTC+AGG | - | chr3.4:99283547-99283566 | None:intergenic | 25.0% |
| AAAACATTCAAGTGAGTGTT+GGG | + | chr3.4:99283519-99283538 | MS.gene68226:intron | 30.0% | |
| AATTGATGCTAAGGAAAAGA+AGG | + | chr3.4:99284838-99284857 | MS.gene68226:CDS | 30.0% | |
| ACATGCGAAAAGAAATTCAA+GGG | + | chr3.4:99284546-99284565 | MS.gene68226:CDS | 30.0% | |
| ATGAATGATGTCATTGTCTA+TGG | - | chr3.4:99284675-99284694 | None:intergenic | 30.0% | |
| ATTCATGCTAAGAGAAAGAA+AGG | + | chr3.4:99284689-99284708 | MS.gene68226:CDS | 30.0% | |
| GAGAAAATAGGACATTCTTA+AGG | + | chr3.4:99283944-99283963 | MS.gene68226:intron | 30.0% | |
| GTCTATATGTACAGTAAAGT+TGG | - | chr3.4:99284413-99284432 | None:intergenic | 30.0% | |
| TAACCAATAACATGTTTACC+CGG | + | chr3.4:99284250-99284269 | MS.gene68226:intron | 30.0% | |
| TAGGATACAAGTTAATATGG+TGG | + | chr3.4:99284078-99284097 | MS.gene68226:intron | 30.0% | |
| TCTCTATAAGCTGAAACATT+GGG | - | chr3.4:99285202-99285221 | None:intergenic | 30.0% | |
| TTTCACCAGTTTGAGAAAAT+AGG | + | chr3.4:99283932-99283951 | MS.gene68226:intron | 30.0% | |
| ! | AAAAAGTATACGACTCACAT+TGG | + | chr3.4:99283465-99283484 | MS.gene68226:intron | 30.0% |
| ! | AATGTCCTATTTTCTCAAAC+TGG | - | chr3.4:99283940-99283959 | None:intergenic | 30.0% |
| ! | GTTTTCATATGCTGAAACAT+TGG | - | chr3.4:99285359-99285378 | None:intergenic | 30.0% |
| !! | AGACAATGGTATTGATGTTA+AGG | + | chr3.4:99285063-99285082 | MS.gene68226:CDS | 30.0% |
| !! | TTTTAAGGATTCGTTATCTC+AGG | - | chr3.4:99283800-99283819 | None:intergenic | 30.0% |
| !!! | GTGTTTTTTCCTTTTTGGTT+AGG | + | chr3.4:99284338-99284357 | MS.gene68226:intron | 30.0% |
| !!! | TATTTTGAAACATTGGGTCT+TGG | - | chr3.4:99284734-99284753 | None:intergenic | 30.0% |
| AAAATGATTAGCAAGCTCGT+TGG | + | chr3.4:99283392-99283411 | MS.gene68226:intron | 35.0% | |
| AACATACCAAGAAAAGCAAG+AGG | - | chr3.4:99282428-99282447 | None:intergenic | 35.0% | |
| AAGTGCAATACGAAAGCAAA+AGG | - | chr3.4:99282680-99282699 | None:intergenic | 35.0% | |
| ACATACCAAGAAAAGCAAGA+GGG | - | chr3.4:99282427-99282446 | None:intergenic | 35.0% | |
| ACCTAACATTTCAGCTTATG+GGG | + | chr3.4:99285432-99285451 | MS.gene68226:CDS | 35.0% | |
| ACTTGTGTGTCTATTACAAG+TGG | - | chr3.4:99284650-99284669 | None:intergenic | 35.0% | |
| AGACAATCGTGTTGAAGTTA+AGG | + | chr3.4:99284985-99285004 | MS.gene68226:CDS | 35.0% | |
| AGACCAAACATTTCAGCATA+TGG | + | chr3.4:99285118-99285137 | MS.gene68226:CDS | 35.0% | |
| AGACCTAACATTTCAGCTTA+TGG | + | chr3.4:99285430-99285449 | MS.gene68226:CDS | 35.0% | |
| AGACCTAATGTTTCAGCTTA+TGG | + | chr3.4:99284806-99284825 | MS.gene68226:CDS | 35.0% | |
| AGGTCTTGGTTCAAAATCTT+TGG | - | chr3.4:99285416-99285435 | None:intergenic | 35.0% | |
| CAAAACATTCAAGTGAGTGT+TGG | + | chr3.4:99283518-99283537 | MS.gene68226:intron | 35.0% | |
| CTTCACACAGATGTATAGAT+AGG | + | chr3.4:99282940-99282959 | MS.gene68226:intron | 35.0% | |
| GACAATCGTGTTGAAGTTAA+GGG | + | chr3.4:99284986-99285005 | MS.gene68226:CDS | 35.0% | |
| GACATGCGAAAAGAAATTCA+AGG | + | chr3.4:99284545-99284564 | MS.gene68226:CDS | 35.0% | |
| GACCTAACATTTCAGCTTAT+GGG | + | chr3.4:99285431-99285450 | MS.gene68226:CDS | 35.0% | |
| GGTAGATTAATCTTAAGTGG+AGG | - | chr3.4:99283713-99283732 | None:intergenic | 35.0% | |
| GTCTCTATAAGCTGAAACAT+TGG | - | chr3.4:99285203-99285222 | None:intergenic | 35.0% | |
| GTTCCATAAGCTGAAACATT+AGG | - | chr3.4:99284812-99284831 | None:intergenic | 35.0% | |
| GTTTCAGCTTATAGAGACAA+TGG | + | chr3.4:99285205-99285224 | MS.gene68226:CDS | 35.0% | |
| TAAGCTGAAATGTTAGGTCT+TGG | - | chr3.4:99285430-99285449 | None:intergenic | 35.0% | |
| TATGCTGAAATGTTTGGTCT+TGG | - | chr3.4:99285118-99285137 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | - | chr3.4:99284890-99284909 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAACATT+GGG | - | chr3.4:99284968-99284987 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAATGTT+TGG | - | chr3.4:99285124-99285143 | None:intergenic | 35.0% | |
| ! | AAACATTCAAGTGAGTGTTG+GGG | + | chr3.4:99283520-99283539 | MS.gene68226:intron | 35.0% |
| ! | AAACCTTTGAAAGACTGCTT+CGG | - | chr3.4:99284608-99284627 | None:intergenic | 35.0% |
| ! | TGTGAAGAGTTGCATGATTT+TGG | - | chr3.4:99282927-99282946 | None:intergenic | 35.0% |
| !! | CTTGAGATTCTTTTTCGTCT+CGG | - | chr3.4:99284582-99284601 | None:intergenic | 35.0% |
| !! | TCGTTATCTCAGGTTGTTTT+AGG | - | chr3.4:99283790-99283809 | None:intergenic | 35.0% |
| !!! | ACCTTTTTTTTGAGGGATCA+AGG | - | chr3.4:99283321-99283340 | None:intergenic | 35.0% |
| !!! | CCTTTTTTTTGAGGGATCAA+GGG | - | chr3.4:99283320-99283339 | None:intergenic | 35.0% |
| !!! | CGAGCTTGCTAATCATTTTT+TGG | - | chr3.4:99283391-99283410 | None:intergenic | 35.0% |
| !!! | GGAGGAGATATTATTTTGAG+TGG | - | chr3.4:99283695-99283714 | None:intergenic | 35.0% |
| !!! | TCAAGGGACCTTTTTTTTGA+GGG | - | chr3.4:99283328-99283347 | None:intergenic | 35.0% |
| AAAAAGGTCCCTTGACCATT+AGG | + | chr3.4:99283333-99283352 | MS.gene68226:intron | 40.0% | |
| ACACCCAATGTTTCAGCATA+TGG | + | chr3.4:99284962-99284981 | MS.gene68226:CDS | 40.0% | |
| AGACCCAATGTTTCAGCATA+TGG | + | chr3.4:99285274-99285293 | MS.gene68226:CDS | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | + | chr3.4:99284884-99284903 | MS.gene68226:CDS | 40.0% | |
| AGCGAACAATCATCTAGTGA+AGG | - | chr3.4:99284293-99284312 | None:intergenic | 40.0% | |
| ATATTTAGTGGCACTTGGTC+GGG | - | chr3.4:99285497-99285516 | None:intergenic | 40.0% | |
| CATACCAAGAAAAGCAAGAG+GGG | - | chr3.4:99282426-99282445 | None:intergenic | 40.0% | |
| CATATTTAGTGGCACTTGGT+CGG | - | chr3.4:99285498-99285517 | None:intergenic | 40.0% | |
| CCCTTGATCCCTCAAAAAAA+AGG | + | chr3.4:99283317-99283336 | MS.gene68226:intron | 40.0% | |
| GCATCATATTTAGTGGCACT+TGG | - | chr3.4:99285502-99285521 | None:intergenic | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | - | chr3.4:99284891-99284910 | None:intergenic | 40.0% | |
| GTCTCCATATGCTGAAACAT+TGG | - | chr3.4:99284969-99284988 | None:intergenic | 40.0% | |
| GTTGGGGTTGAGATAAAATG+TGG | - | chr3.4:99284124-99284143 | None:intergenic | 40.0% | |
| GTTTCAGCTTATGGAGACAA+TGG | + | chr3.4:99284893-99284912 | MS.gene68226:CDS | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | - | chr3.4:99284884-99284903 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTCT+TGG | - | chr3.4:99285274-99285293 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTGT+TGG | - | chr3.4:99284962-99284981 | None:intergenic | 40.0% | |
| TCCCCATAAGCTGAAATGTT+AGG | - | chr3.4:99285436-99285455 | None:intergenic | 40.0% | |
| TGAAGGTTTCCCTTGTATTC+TGG | - | chr3.4:99284276-99284295 | None:intergenic | 40.0% | |
| TGACTCTCAGAGAGAACTTT+AGG | - | chr3.4:99283734-99283753 | None:intergenic | 40.0% | |
| ! | TTGAACGTCGTAAGAAGTGT+TGG | - | chr3.4:99284142-99284161 | None:intergenic | 40.0% |
| !! | ATTGCTTTTCGCTTTCCCTT+CGG | - | chr3.4:99284230-99284249 | None:intergenic | 40.0% |
| !! | TGAACGTCGTAAGAAGTGTT+GGG | - | chr3.4:99284141-99284160 | None:intergenic | 40.0% |
| !!! | GTCAAGGGACCTTTTTTTTG+AGG | - | chr3.4:99283329-99283348 | None:intergenic | 40.0% |
| ACTCCGAAGCAGTCTTTCAA+AGG | + | chr3.4:99284602-99284621 | MS.gene68226:CDS | 45.0% | |
| GCAATGGACCTAATGGTCAA+GGG | - | chr3.4:99283344-99283363 | None:intergenic | 45.0% | |
| TATTTAGTGGCACTTGGTCG+GGG | - | chr3.4:99285496-99285515 | None:intergenic | 45.0% | |
| TGACCATTAGGTCCATTGCA+CGG | + | chr3.4:99283345-99283364 | MS.gene68226:intron | 45.0% | |
| TGCAATGGACCTAATGGTCA+AGG | - | chr3.4:99283345-99283364 | None:intergenic | 45.0% | |
| TGGCCGGGTAAACATGTTAT+TGG | - | chr3.4:99284256-99284275 | None:intergenic | 45.0% | |
| TTTACCCGGCCAGAATACAA+GGG | + | chr3.4:99284264-99284283 | MS.gene68226:intron | 45.0% | |
| !! | GAACGTCGTAAGAAGTGTTG+GGG | - | chr3.4:99284140-99284159 | None:intergenic | 45.0% |
| !! | TTGCTTTTCGCTTTCCCTTC+GGG | - | chr3.4:99284229-99284248 | None:intergenic | 45.0% |
| !! | AACAAAAATAATAAATATTT+AGG | + | chr3.4:99283293-99283312 | MS.gene68226:intron | 5.0% |
| !!! | TGTTATTTTTTATTTTTTTA+AGG | - | chr3.4:99284177-99284196 | None:intergenic | 5.0% |
| AAACGGTATCCTCCGTGCAA+TGG | - | chr3.4:99283360-99283379 | None:intergenic | 50.0% | |
| GGTTTCCCTTGTATTCTGGC+CGG | - | chr3.4:99284272-99284291 | None:intergenic | 50.0% | |
| GTTTACCCGGCCAGAATACA+AGG | + | chr3.4:99284263-99284282 | MS.gene68226:intron | 50.0% | |
| GTTTCCCTTGTATTCTGGCC+GGG | - | chr3.4:99284271-99284290 | None:intergenic | 50.0% | |
| !! | GTTGCCCCTCTTGCTTTTCT+TGG | + | chr3.4:99282419-99282438 | MS.gene68226:CDS | 50.0% |
| !! | TGGTGGCTTGCTGCTTAGAA+AGG | + | chr3.4:99284095-99284114 | MS.gene68226:intron | 50.0% |
| AGGGGCAACAAAGCAAGAGC+AGG | - | chr3.4:99282408-99282427 | None:intergenic | 55.0% | |
| CCATTAGGTCCATTGCACGG+AGG | + | chr3.4:99283348-99283367 | MS.gene68226:intron | 55.0% | |
| CCCTTCGGGACAATCTTCGT+CGG | - | chr3.4:99284215-99284234 | None:intergenic | 55.0% | |
| CCGACGAAGATTGTCCCGAA+GGG | + | chr3.4:99284212-99284231 | MS.gene68226:intron | 55.0% | |
| CCTCCGTGCAATGGACCTAA+TGG | - | chr3.4:99283351-99283370 | None:intergenic | 55.0% | |
| CCTTCGGGACAATCTTCGTC+GGG | - | chr3.4:99284214-99284233 | None:intergenic | 55.0% | |
| CCCGACGAAGATTGTCCCGA+AGG | + | chr3.4:99284211-99284230 | MS.gene68226:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 99282399 | 99285525 | 99282399 | ID=MS.gene68226 |
| chr3.4 | mRNA | 99282399 | 99285525 | 99282399 | ID=MS.gene68226.t1;Parent=MS.gene68226 |
| chr3.4 | exon | 99282399 | 99282440 | 99282399 | ID=MS.gene68226.t1.exon1;Parent=MS.gene68226.t1 |
| chr3.4 | CDS | 99282399 | 99282440 | 99282399 | ID=cds.MS.gene68226.t1;Parent=MS.gene68226.t1 |
| chr3.4 | exon | 99284479 | 99285525 | 99284479 | ID=MS.gene68226.t1.exon2;Parent=MS.gene68226.t1 |
| chr3.4 | CDS | 99284479 | 99285525 | 99284479 | ID=cds.MS.gene68226.t1;Parent=MS.gene68226.t1 |
| Gene Sequence |
| Protein sequence |
