Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68372.t1 | XP_003590190.1 | 98.8 | 505 | 6 | 0 | 1 | 505 | 1 | 505 | 1.20E-292 | 1015 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68372.t1 | Q94AR8 | 80.0 | 509 | 95 | 3 | 3 | 505 | 2 | 509 | 2.2e-242 | 839.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68372.t1 | G7I6Q7 | 98.8 | 505 | 6 | 0 | 1 | 505 | 1 | 505 | 8.8e-293 | 1015.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene033323 | MS.gene68372 | PPI |
MS.gene68372 | MS.gene011362 | PPI |
MS.gene059965 | MS.gene68372 | PPI |
MS.gene68372 | MS.gene48297 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68372.t1 | MTR_1g045750 | 98.812 | 505 | 6 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1042 |
MS.gene68372.t1 | MTR_1g073200 | 70.286 | 525 | 127 | 6 | 8 | 505 | 5 | 527 | 0.0 | 763 |
MS.gene68372.t1 | MTR_1g045760 | 62.651 | 83 | 12 | 1 | 107 | 189 | 52 | 115 | 2.12e-26 | 105 |
MS.gene68372.t1 | MTR_1g045770 | 93.478 | 46 | 3 | 0 | 460 | 505 | 53 | 98 | 2.28e-23 | 94.7 |
MS.gene68372.t1 | MTR_2g088360 | 24.396 | 455 | 257 | 17 | 122 | 497 | 205 | 651 | 4.98e-16 | 81.6 |
MS.gene68372.t1 | MTR_4g048190 | 24.439 | 401 | 221 | 13 | 166 | 497 | 264 | 651 | 5.29e-16 | 81.6 |
MS.gene68372.t1 | MTR_5g022940 | 24.939 | 409 | 211 | 16 | 166 | 498 | 80 | 468 | 1.62e-13 | 73.6 |
MS.gene68372.t1 | MTR_5g022940 | 27.907 | 215 | 128 | 6 | 166 | 360 | 184 | 391 | 2.12e-13 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68372.t1 | AT4G13430 | 79.961 | 509 | 95 | 3 | 3 | 505 | 2 | 509 | 0.0 | 864 |
MS.gene68372.t1 | AT4G26970 | 24.109 | 477 | 260 | 16 | 108 | 497 | 206 | 667 | 4.27e-17 | 85.1 |
MS.gene68372.t1 | AT2G05710 | 24.631 | 406 | 216 | 14 | 166 | 498 | 275 | 663 | 6.58e-16 | 81.6 |
MS.gene68372.t1 | AT4G35830 | 22.737 | 453 | 267 | 14 | 122 | 497 | 21 | 467 | 1.45e-14 | 77.0 |
MS.gene68372.t1 | AT4G35830 | 22.737 | 453 | 267 | 14 | 122 | 497 | 124 | 570 | 1.68e-14 | 77.0 |
Find 121 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACACCTGGGGATAATATT+TGG | 0.139762 | 1.3:+27444690 | MS.gene68372:CDS |
TCATTTACCTTACAGATTAT+TGG | 0.189248 | 1.3:+27447407 | MS.gene68372:intron |
TAGATTTGATGTCTCAAAAT+TGG | 0.219082 | 1.3:+27451702 | MS.gene68372:CDS |
GTTTGTGGTCCTGGTTCTAT+TGG | 0.237513 | 1.3:+27444743 | MS.gene68372:CDS |
TTGCAGACCTTCTGTGTTGC+AGG | 0.256714 | 1.3:-27452406 | None:intergenic |
CAGGGAAGGTGAAATATATT+TGG | 0.262996 | 1.3:+27453105 | MS.gene68372:CDS |
ATGCGGGCATAAGTATCTTT+TGG | 0.265262 | 1.3:-27452664 | None:intergenic |
AACCACAAATAGAAACTTTC+CGG | 0.305213 | 1.3:+27453069 | MS.gene68372:CDS |
TCTATATTTGCAGGGTAAAA+AGG | 0.306488 | 1.3:+27452360 | MS.gene68372:intron |
ATTCTTTCTGCAGGTTCTCT+TGG | 0.309426 | 1.3:+27446022 | MS.gene68372:intron |
CTTGCCAAAGCACGGTTATC+TGG | 0.321138 | 1.3:-27451848 | None:intergenic |
CCCCGGAAAGTTTCTATTTG+TGG | 0.334617 | 1.3:-27453071 | None:intergenic |
GCTTGCTGGTCACTATATAC+TGG | 0.339417 | 1.3:-27451124 | None:intergenic |
CCTAGTTGTGGTGCCTGTTT+AGG | 0.343921 | 1.3:+27452637 | MS.gene68372:CDS |
TGACAAACACCTTTGTAATC+TGG | 0.349047 | 1.3:-27445871 | None:intergenic |
ACTTGTACTGCTGGAGCATT+TGG | 0.355022 | 1.3:+27446059 | MS.gene68372:CDS |
AGTCTTCCTGTCCCTGGATC+TGG | 0.355783 | 1.3:+27452559 | MS.gene68372:CDS |
TATTTATATGTAATGCTATC+TGG | 0.356860 | 1.3:-27447679 | None:intergenic |
ACTTTGTCTACCTTGCTTGC+TGG | 0.358067 | 1.3:-27451138 | None:intergenic |
TACACCTGGGGATAATATTT+GGG | 0.359970 | 1.3:+27444691 | MS.gene68372:CDS |
TTTGTGGTCCTGGTTCTATT+GGG | 0.370313 | 1.3:+27444744 | MS.gene68372:CDS |
GCATTTGGTCAATTTGCAAC+AGG | 0.376621 | 1.3:+27446074 | MS.gene68372:CDS |
TTCTTTCTGCAGGTTCTCTT+GGG | 0.379309 | 1.3:+27446023 | MS.gene68372:intron |
ACTCATGATGTTTGTGGTCC+TGG | 0.386188 | 1.3:+27444734 | MS.gene68372:CDS |
GCAGATGCTGCAGCTGTATA+TGG | 0.406662 | 1.3:-27453133 | None:intergenic |
ACCACAAATAGAAACTTTCC+GGG | 0.409827 | 1.3:+27453070 | MS.gene68372:CDS |
TACAAATCAATGGAGTTTGT+TGG | 0.414163 | 1.3:+27447455 | MS.gene68372:CDS |
CAGCGTCAACCTTCTTCAAC+TGG | 0.418217 | 1.3:+27444507 | MS.gene68372:CDS |
GACTATGACTGAGAAGATAA+TGG | 0.419716 | 1.3:+27444643 | MS.gene68372:CDS |
TGCAACATGGTTGTTGAAGC+TGG | 0.422479 | 1.3:+27447634 | MS.gene68372:CDS |
CAGGAAGGACATTGCAGGCC+AGG | 0.422576 | 1.3:+27445907 | MS.gene68372:CDS |
TCCAACTTTGAGATTTGTAA+TGG | 0.425112 | 1.3:+27447263 | MS.gene68372:CDS |
TTGCTCAGGAAGGACATTGC+AGG | 0.427526 | 1.3:+27445902 | MS.gene68372:CDS |
TCCATTACAAATCTCAAAGT+TGG | 0.438795 | 1.3:-27447264 | None:intergenic |
GGTCAATTTGCAACAGGGAT+TGG | 0.439036 | 1.3:+27446080 | MS.gene68372:CDS |
TTCACCAGATAACCGTGCTT+TGG | 0.440182 | 1.3:+27451844 | MS.gene68372:CDS |
CCCTGCACCCAACACAAAAC+CGG | 0.444047 | 1.3:-27446114 | None:intergenic |
TTGTCACATCGCTCTTGCTC+AGG | 0.452572 | 1.3:+27445888 | MS.gene68372:CDS |
AGAAACTTTCCGGGGCGAAT+GGG | 0.454116 | 1.3:+27453079 | MS.gene68372:CDS |
GCTTACTGCAAGAACTCTCT+TGG | 0.458711 | 1.3:-27453178 | None:intergenic |
TAGAAACTTTCCGGGGCGAA+TGG | 0.460998 | 1.3:+27453078 | MS.gene68372:CDS |
TCACTATATACTGGTTCATA+TGG | 0.463569 | 1.3:-27451115 | None:intergenic |
TAAACTAATCGAACCTCTCC+TGG | 0.468166 | 1.3:-27445925 | None:intergenic |
CAAGTCTTACCACCAGATCC+AGG | 0.471556 | 1.3:-27452571 | None:intergenic |
TTGATGACTCATGATGTTTG+TGG | 0.477394 | 1.3:+27444728 | MS.gene68372:CDS |
GATTCTCACACTTGTACTGC+TGG | 0.482639 | 1.3:+27446050 | MS.gene68372:CDS |
CATCACTTGTGAATATATAG+TGG | 0.485083 | 1.3:-27445646 | None:intergenic |
GTGTATAGTCTTCCTGTCCC+TGG | 0.486113 | 1.3:+27452553 | MS.gene68372:CDS |
AAGCACCTTGGTGGGGAGGA+AGG | 0.493838 | 1.3:-27444295 | None:intergenic |
ACTTTGAGATTTGTAATGGA+TGG | 0.496494 | 1.3:+27447267 | MS.gene68372:CDS |
TGCAGACCTTCTGTGTTGCA+GGG | 0.496669 | 1.3:-27452405 | None:intergenic |
CTTGGTGGGGAGGAAGGAGG+TGG | 0.502600 | 1.3:-27444289 | None:intergenic |
CCTAAACAGGCACCACAACT+AGG | 0.504350 | 1.3:-27452637 | None:intergenic |
GAAGGTTTGGGATCGTGAAA+AGG | 0.504446 | 1.3:+27445607 | MS.gene68372:intron |
GGAGGTGGAAGGAACAAGAG+AGG | 0.512338 | 1.3:-27444274 | None:intergenic |
AATGGAACTTCAGGTTTGGA+TGG | 0.515201 | 1.3:+27452528 | MS.gene68372:intron |
TCTTGGATCAGTAACATAAC+CGG | 0.516702 | 1.3:-27453161 | None:intergenic |
GCCAAGTTATTTGCTTGCCA+AGG | 0.519501 | 1.3:+27447296 | MS.gene68372:CDS |
ATGGCGAAAGCTTCTGAGAA+GGG | 0.519753 | 1.3:+27444662 | MS.gene68372:CDS |
GGGATTGGTAATACTGATGC+CGG | 0.521210 | 1.3:+27446095 | MS.gene68372:CDS |
TTGTGACATCGTTGAGAAGA+TGG | 0.523423 | 1.3:-27444435 | None:intergenic |
TGCCCGCATGAATGAACCTC+AGG | 0.527832 | 1.3:+27452678 | MS.gene68372:CDS |
CTTGTGAATATATAGTGGTC+GGG | 0.527851 | 1.3:-27445641 | None:intergenic |
TACTTGCAGAATCAAATCCT+TGG | 0.528971 | 1.3:-27447313 | None:intergenic |
CAAACTGATCCAGTTGAAGA+AGG | 0.529297 | 1.3:-27444516 | None:intergenic |
TTCCGGGGCGAATGGGACAC+AGG | 0.531615 | 1.3:+27453086 | MS.gene68372:CDS |
TGCACTCTCTTGCCAAAGCA+CGG | 0.532465 | 1.3:-27451856 | None:intergenic |
GAGAAGGGGCATGTTACACC+TGG | 0.536724 | 1.3:+27444677 | MS.gene68372:CDS |
GCACCACAACTAGGACTAGC+AGG | 0.540744 | 1.3:-27452628 | None:intergenic |
ACTTGTGAATATATAGTGGT+CGG | 0.545790 | 1.3:-27445642 | None:intergenic |
TCCTTGGCAAGCAAATAACT+TGG | 0.546758 | 1.3:-27447297 | None:intergenic |
TGCCTGAGGTTCATTCATGC+GGG | 0.549238 | 1.3:-27452680 | None:intergenic |
ATTGGAGCCACTGGTTGCCA+AGG | 0.549517 | 1.3:+27451720 | MS.gene68372:CDS |
TATATAGTGACCAGCAAGCA+AGG | 0.550703 | 1.3:+27451128 | MS.gene68372:CDS |
AGTTGTGGTGCCTGTTTAGG+TGG | 0.552875 | 1.3:+27452640 | MS.gene68372:CDS |
GGGCGAATGGGACACAGGGA+AGG | 0.553009 | 1.3:+27453091 | MS.gene68372:CDS |
AGTATACATAGGATCTTGTA+CGG | 0.554141 | 1.3:+27451898 | MS.gene68372:CDS |
TGGTGCAACTTACAAATCAA+TGG | 0.554753 | 1.3:+27447445 | MS.gene68372:CDS |
CTTCCTGTCCCTGGATCTGG+TGG | 0.555351 | 1.3:+27452562 | MS.gene68372:CDS |
GTGGGGAGGAAGGAGGTGGA+AGG | 0.556581 | 1.3:-27444285 | None:intergenic |
TGCTTTGGCAAGAGAGTGCA+AGG | 0.558334 | 1.3:+27451859 | MS.gene68372:CDS |
GTTGAAGCTGGAGGAAAGAA+TGG | 0.560027 | 1.3:+27447646 | MS.gene68372:CDS |
ATTACAAATCTCAAAGTTGG+AGG | 0.561995 | 1.3:-27447261 | None:intergenic |
GGAGTTTGGTCAGGATGCTA+AGG | 0.562090 | 1.3:+27444778 | MS.gene68372:CDS |
TCTTGTCCCTGCAACACAGA+AGG | 0.562826 | 1.3:+27452399 | MS.gene68372:CDS |
TGTCTCAAAATTGGAGCCAC+TGG | 0.563417 | 1.3:+27451711 | MS.gene68372:CDS |
TTGCCTGAGGTTCATTCATG+CGG | 0.565671 | 1.3:-27452681 | None:intergenic |
ATTGGTGAAATAAGTGTGGC+TGG | 0.569430 | 1.3:+27447425 | MS.gene68372:CDS |
CATTTGGTCAATTTGCAACA+GGG | 0.572263 | 1.3:+27446075 | MS.gene68372:CDS |
CACCTCCTTCCTCCCCACCA+AGG | 0.577013 | 1.3:+27444290 | MS.gene68372:CDS |
GCACGGTTATCTGGTGAATG+AGG | 0.581249 | 1.3:-27451839 | None:intergenic |
CATTACATATAAATATCTTG+AGG | 0.587292 | 1.3:+27447687 | MS.gene68372:CDS |
CACATCGCTCTTGCTCAGGA+AGG | 0.591175 | 1.3:+27445892 | MS.gene68372:CDS |
GCTGCAGCATCTGCATTGAC+CGG | 0.594770 | 1.3:+27453142 | MS.gene68372:CDS |
AGGACATTGCAGGCCAGGAG+AGG | 0.598823 | 1.3:+27445912 | MS.gene68372:CDS |
GAGTATGTCAACATTGCGAT+TGG | 0.598835 | 1.3:-27445675 | None:intergenic |
TTACCACCAGATCCAGGGAC+AGG | 0.600757 | 1.3:-27452565 | None:intergenic |
TCCCTGTGTCCCATTCGCCC+CGG | 0.605947 | 1.3:-27453088 | None:intergenic |
AATGGCGAAAGCTTCTGAGA+AGG | 0.607979 | 1.3:+27444661 | MS.gene68372:CDS |
AAAATTGACAGAGTATACAT+AGG | 0.608193 | 1.3:+27451887 | MS.gene68372:CDS |
CACCTTGGTGGGGAGGAAGG+AGG | 0.611033 | 1.3:-27444292 | None:intergenic |
TCAACCCAAATATTATCCCC+AGG | 0.614366 | 1.3:-27444695 | None:intergenic |
TACATAGGATCTTGTACGGG+TGG | 0.615320 | 1.3:+27451902 | MS.gene68372:CDS |
GGTTGACGCTGTGTCTGTTG+AGG | 0.615350 | 1.3:-27444495 | None:intergenic |
TCCGGGGCGAATGGGACACA+GGG | 0.617857 | 1.3:+27453087 | MS.gene68372:CDS |
TGGCGAAAGCTTCTGAGAAG+GGG | 0.629318 | 1.3:+27444663 | MS.gene68372:CDS |
AGAAGGGGCATGTTACACCT+GGG | 0.630209 | 1.3:+27444678 | MS.gene68372:CDS |
CAGGTAAATCCAGATTACAA+AGG | 0.639525 | 1.3:+27445862 | MS.gene68372:intron |
AAGTCTTACCACCAGATCCA+GGG | 0.642020 | 1.3:-27452570 | None:intergenic |
AGTACTTGATATCTTGCTCG+TGG | 0.647484 | 1.3:-27445709 | None:intergenic |
GTATACATAGGATCTTGTAC+GGG | 0.648403 | 1.3:+27451899 | MS.gene68372:CDS |
TGTTGCAGGGACAAGAAATG+TGG | 0.650698 | 1.3:-27452392 | None:intergenic |
GGACTAACCTTGGCAACCAG+TGG | 0.655420 | 1.3:-27451727 | None:intergenic |
TTATATGTAATGCTATCTGG+AGG | 0.666348 | 1.3:-27447676 | None:intergenic |
ACACCTGCTAGTCCTAGTTG+TGG | 0.669604 | 1.3:+27452625 | MS.gene68372:CDS |
GAAGGGGCATGTTACACCTG+GGG | 0.687521 | 1.3:+27444679 | MS.gene68372:CDS |
ACGGATGACATTGTGCAACA+TGG | 0.689455 | 1.3:+27447621 | MS.gene68372:CDS |
GTTGCAGGGACAAGAAATGT+GGG | 0.707328 | 1.3:-27452391 | None:intergenic |
CCACAAATAGAAACTTTCCG+GGG | 0.722228 | 1.3:+27453071 | MS.gene68372:CDS |
GATTATTGGTGAAATAAGTG+TGG | 0.724786 | 1.3:+27447421 | MS.gene68372:intron |
AACATGGTTGTTGAAGCTGG+AGG | 0.764525 | 1.3:+27447637 | MS.gene68372:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 27444267 | 27453198 | 27444267 | ID=MS.gene68372 |
chr1.3 | mRNA | 27444267 | 27453198 | 27444267 | ID=MS.gene68372.t1;Parent=MS.gene68372 |
chr1.3 | exon | 27444267 | 27444311 | 27444267 | ID=MS.gene68372.t1.exon1;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27444267 | 27444311 | 27444267 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27444405 | 27444533 | 27444405 | ID=MS.gene68372.t1.exon2;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27444405 | 27444533 | 27444405 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27444629 | 27444799 | 27444629 | ID=MS.gene68372.t1.exon3;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27444629 | 27444799 | 27444629 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27445611 | 27445763 | 27445611 | ID=MS.gene68372.t1.exon4;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27445611 | 27445763 | 27445611 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27445865 | 27445933 | 27445865 | ID=MS.gene68372.t1.exon5;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27445865 | 27445933 | 27445865 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27446035 | 27446151 | 27446035 | ID=MS.gene68372.t1.exon6;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27446035 | 27446151 | 27446035 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27447258 | 27447332 | 27447258 | ID=MS.gene68372.t1.exon7;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27447258 | 27447332 | 27447258 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27447422 | 27447499 | 27447422 | ID=MS.gene68372.t1.exon8;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27447422 | 27447499 | 27447422 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27447613 | 27447708 | 27447613 | ID=MS.gene68372.t1.exon9;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27447613 | 27447708 | 27447613 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27451100 | 27451149 | 27451100 | ID=MS.gene68372.t1.exon10;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27451100 | 27451149 | 27451100 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27451687 | 27451741 | 27451687 | ID=MS.gene68372.t1.exon11;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27451687 | 27451741 | 27451687 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27451839 | 27451970 | 27451839 | ID=MS.gene68372.t1.exon12;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27451839 | 27451970 | 27451839 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27452373 | 27452420 | 27452373 | ID=MS.gene68372.t1.exon13;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27452373 | 27452420 | 27452373 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27452541 | 27452699 | 27452541 | ID=MS.gene68372.t1.exon14;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27452541 | 27452699 | 27452541 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
chr1.3 | exon | 27453058 | 27453198 | 27453058 | ID=MS.gene68372.t1.exon15;Parent=MS.gene68372.t1 |
chr1.3 | CDS | 27453058 | 27453198 | 27453058 | ID=cds.MS.gene68372.t1;Parent=MS.gene68372.t1 |
Gene Sequence |
Protein sequence |