Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68436.t1 | KEH43302.1 | 96.8 | 220 | 5 | 1 | 1 | 218 | 1 | 220 | 2.60E-114 | 421.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68436.t1 | Q94A57 | 32.9 | 213 | 116 | 5 | 1 | 186 | 73 | 285 | 4.7e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68436.t1 | A0A072VPG6 | 96.8 | 220 | 5 | 1 | 1 | 218 | 76 | 295 | 1.8e-114 | 421.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene68436 | 0.807664 | 4.52E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene68436 | 0.806056 | 9.90E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene68436 | 0.8357 | 1.44E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene68436 | 0.819803 | 9.59E-53 | -1.69E-46 |
| MS.gene053883 | MS.gene68436 | 0.813194 | 2.90E-51 | -1.69E-46 |
| MS.gene053998 | MS.gene68436 | 0.810879 | 9.25E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene68436 | 0.809425 | 1.90E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene68436 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene055778 | MS.gene68436 | 0.814172 | 1.76E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene68436 | 0.816724 | 4.77E-52 | -1.69E-46 |
| MS.gene056498 | MS.gene68436 | 0.811834 | 5.74E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene68436 | 0.810149 | 1.33E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene68436 | 0.800827 | 1.20E-48 | -1.69E-46 |
| MS.gene059625 | MS.gene68436 | 0.801417 | 9.09E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene68436 | 0.809431 | 1.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68436.t1 | MTR_1g090670 | 96.818 | 220 | 5 | 1 | 1 | 218 | 1 | 220 | 3.94e-160 | 441 |
| MS.gene68436.t1 | MTR_1g090670 | 96.818 | 220 | 5 | 1 | 1 | 218 | 76 | 295 | 9.76e-159 | 441 |
| MS.gene68436.t1 | MTR_2g027800 | 70.782 | 243 | 46 | 5 | 1 | 218 | 71 | 313 | 2.76e-110 | 319 |
| MS.gene68436.t1 | MTR_2g027800 | 67.500 | 240 | 45 | 5 | 1 | 218 | 71 | 299 | 3.19e-100 | 293 |
| MS.gene68436.t1 | MTR_6g444980 | 44.094 | 127 | 58 | 4 | 1 | 123 | 67 | 184 | 8.77e-21 | 89.4 |
| MS.gene68436.t1 | MTR_7g088070 | 37.600 | 125 | 56 | 2 | 1 | 117 | 82 | 192 | 2.83e-18 | 81.3 |
| MS.gene68436.t1 | MTR_7g088070 | 38.017 | 121 | 57 | 2 | 1 | 117 | 82 | 188 | 2.97e-18 | 81.3 |
| MS.gene68436.t1 | MTR_6g444980 | 48.544 | 103 | 41 | 3 | 1 | 100 | 67 | 160 | 5.74e-18 | 81.3 |
| MS.gene68436.t1 | MTR_4g081710 | 42.735 | 117 | 58 | 4 | 1 | 111 | 49 | 162 | 3.16e-17 | 79.3 |
| MS.gene68436.t1 | MTR_5g041350 | 44.660 | 103 | 54 | 1 | 1 | 100 | 47 | 149 | 7.56e-17 | 78.2 |
| MS.gene68436.t1 | MTR_5g027440 | 38.686 | 137 | 76 | 4 | 1 | 131 | 57 | 191 | 8.19e-17 | 77.4 |
| MS.gene68436.t1 | MTR_7g098250 | 32.020 | 203 | 108 | 8 | 1 | 190 | 294 | 479 | 3.65e-16 | 77.0 |
| MS.gene68436.t1 | MTR_6g032990 | 34.328 | 134 | 80 | 3 | 1 | 126 | 74 | 207 | 1.57e-15 | 74.7 |
| MS.gene68436.t1 | MTR_2g086450 | 35.507 | 138 | 77 | 4 | 1 | 126 | 77 | 214 | 1.66e-15 | 74.7 |
| MS.gene68436.t1 | MTR_2g027860 | 39.423 | 104 | 54 | 2 | 1 | 103 | 81 | 176 | 3.68e-14 | 70.5 |
| MS.gene68436.t1 | MTR_7g115530 | 33.028 | 109 | 64 | 1 | 4 | 112 | 253 | 352 | 1.52e-11 | 63.2 |
| MS.gene68436.t1 | MTR_1g080330 | 35.000 | 100 | 56 | 2 | 4 | 103 | 210 | 300 | 9.75e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68436.t1 | AT3G24120 | 41.270 | 189 | 83 | 6 | 1 | 163 | 73 | 259 | 2.04e-33 | 122 |
| MS.gene68436.t1 | AT4G13640 | 40.984 | 183 | 86 | 5 | 1 | 162 | 69 | 250 | 5.37e-32 | 118 |
| MS.gene68436.t1 | AT3G24120 | 40.625 | 192 | 83 | 7 | 1 | 163 | 73 | 262 | 2.32e-31 | 116 |
| MS.gene68436.t1 | AT4G13640 | 40.323 | 186 | 86 | 6 | 1 | 162 | 69 | 253 | 6.03e-30 | 112 |
| MS.gene68436.t1 | AT1G79430 | 47.826 | 115 | 47 | 4 | 1 | 111 | 1 | 106 | 3.25e-21 | 89.7 |
| MS.gene68436.t1 | AT1G79430 | 47.826 | 115 | 47 | 4 | 1 | 111 | 66 | 171 | 9.75e-21 | 89.4 |
| MS.gene68436.t1 | AT1G69580 | 42.063 | 126 | 52 | 4 | 1 | 111 | 66 | 185 | 9.60e-18 | 80.5 |
| MS.gene68436.t1 | AT1G69580 | 42.400 | 125 | 54 | 5 | 1 | 111 | 66 | 186 | 5.19e-17 | 78.6 |
| MS.gene68436.t1 | AT3G04030 | 33.862 | 189 | 93 | 8 | 1 | 164 | 1 | 182 | 2.70e-16 | 76.3 |
| MS.gene68436.t1 | AT3G04030 | 33.862 | 189 | 93 | 8 | 1 | 164 | 76 | 257 | 4.84e-16 | 76.3 |
| MS.gene68436.t1 | AT3G04030 | 33.862 | 189 | 93 | 8 | 1 | 164 | 77 | 258 | 4.91e-16 | 76.3 |
| MS.gene68436.t1 | AT2G01060 | 31.034 | 174 | 88 | 4 | 1 | 166 | 47 | 196 | 7.40e-16 | 74.7 |
| MS.gene68436.t1 | AT2G01060 | 30.994 | 171 | 86 | 4 | 4 | 166 | 1 | 147 | 5.22e-15 | 71.6 |
| MS.gene68436.t1 | AT5G18240 | 30.319 | 188 | 101 | 6 | 1 | 164 | 77 | 258 | 1.46e-14 | 72.0 |
| MS.gene68436.t1 | AT5G18240 | 30.319 | 188 | 101 | 6 | 1 | 164 | 77 | 258 | 1.46e-14 | 72.0 |
| MS.gene68436.t1 | AT3G12730 | 40.171 | 117 | 52 | 4 | 1 | 108 | 1 | 108 | 3.03e-14 | 68.6 |
| MS.gene68436.t1 | AT3G12730 | 40.171 | 117 | 52 | 4 | 1 | 108 | 55 | 162 | 8.62e-14 | 68.6 |
| MS.gene68436.t1 | AT3G13040 | 41.667 | 108 | 50 | 3 | 2 | 104 | 274 | 373 | 2.70e-13 | 68.6 |
| MS.gene68436.t1 | AT3G13040 | 41.667 | 108 | 50 | 3 | 2 | 104 | 274 | 373 | 2.70e-13 | 68.6 |
| MS.gene68436.t1 | AT3G13040 | 41.667 | 108 | 50 | 3 | 2 | 104 | 274 | 373 | 2.70e-13 | 68.6 |
| MS.gene68436.t1 | AT5G18240 | 30.319 | 188 | 99 | 7 | 1 | 164 | 77 | 256 | 7.64e-13 | 67.0 |
| MS.gene68436.t1 | AT5G45580 | 36.667 | 120 | 66 | 4 | 1 | 110 | 39 | 158 | 2.84e-12 | 64.7 |
| MS.gene68436.t1 | AT5G06800 | 33.981 | 103 | 63 | 1 | 1 | 103 | 224 | 321 | 2.96e-12 | 65.5 |
| MS.gene68436.t1 | AT5G45580 | 36.667 | 120 | 66 | 4 | 1 | 110 | 55 | 174 | 2.98e-12 | 64.7 |
| MS.gene68436.t1 | AT3G04030 | 32.275 | 189 | 90 | 9 | 1 | 164 | 1 | 176 | 6.22e-12 | 63.9 |
| MS.gene68436.t1 | AT3G04030 | 31.746 | 189 | 91 | 9 | 1 | 164 | 77 | 252 | 8.01e-12 | 63.9 |
| MS.gene68436.t1 | AT3G04450 | 34.513 | 113 | 61 | 3 | 1 | 109 | 230 | 333 | 1.52e-11 | 63.2 |
| MS.gene68436.t1 | AT3G04450 | 34.513 | 113 | 61 | 3 | 1 | 109 | 230 | 333 | 1.52e-11 | 63.2 |
| MS.gene68436.t1 | AT3G04450 | 34.513 | 113 | 61 | 3 | 1 | 109 | 270 | 373 | 1.58e-11 | 63.2 |
| MS.gene68436.t1 | AT4G28610 | 35.577 | 104 | 57 | 2 | 1 | 103 | 257 | 351 | 3.19e-11 | 62.4 |
Find 59 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATGCCTCCTTGACTTCA+TGG | 0.229322 | 1.1:-66164890 | None:intergenic |
| CATCAGAAGCTGGTAACTTT+GGG | 0.286915 | 1.1:-66164755 | None:intergenic |
| CAATTCCTTGAGGATTGACT+TGG | 0.327561 | 1.1:-66166000 | None:intergenic |
| TCATTTAAAGAGTCATCTTC+AGG | 0.349057 | 1.1:+66164319 | MS.gene68436:CDS |
| CCTTGAGGCTGGAGAATATA+TGG | 0.350192 | 1.1:-66165812 | None:intergenic |
| GCATCAGAAGCTGGTAACTT+TGG | 0.381430 | 1.1:-66164756 | None:intergenic |
| TGAGACTTTCAAGTGATGTT+AGG | 0.385713 | 1.1:-66165859 | None:intergenic |
| CTCAGAGGATTGACACTAGA+AGG | 0.392959 | 1.1:+66165878 | MS.gene68436:CDS |
| TTTATGTATTGCAGAAGTAT+AGG | 0.395607 | 1.1:+66164434 | MS.gene68436:intron |
| GTCAAAGAGGATGCTGGGCT+TGG | 0.410169 | 1.1:+66165913 | MS.gene68436:CDS |
| AGATGCAGAACGGAGATATA+TGG | 0.414090 | 1.1:+66165661 | MS.gene68436:CDS |
| TGTCAAACCCTTGACATTCA+TGG | 0.421899 | 1.1:-66164291 | None:intergenic |
| AGTACCGAGCTAGGTGGAAA+TGG | 0.432099 | 1.1:+66165770 | MS.gene68436:CDS |
| GGAGGCATTAAGAGCACAAA+TGG | 0.440107 | 1.1:+66164902 | MS.gene68436:CDS |
| CCATGGTATCACCTTTGATC+TGG | 0.443004 | 1.1:+66165939 | MS.gene68436:CDS |
| AGCAGTTAGCCCCTTGAGGC+TGG | 0.448240 | 1.1:-66165823 | None:intergenic |
| TACTCGTTTGCATCAGAAGC+TGG | 0.451451 | 1.1:-66164765 | None:intergenic |
| CCTCAAGGAATTGCAAGGTA+TGG | 0.481514 | 1.1:+66166010 | MS.gene68436:CDS |
| TATATCTCCGTTCTGCATCT+TGG | 0.482620 | 1.1:-66165658 | None:intergenic |
| TATAGGCTTGGTAAGCAAGC+TGG | 0.484630 | 1.1:+66164451 | MS.gene68436:CDS |
| TTTGACGAGGGATGCAAAGA+TGG | 0.489601 | 1.1:+66164481 | MS.gene68436:CDS |
| TAGTGGGTCAAAGAGGATGC+TGG | 0.491447 | 1.1:+66165907 | MS.gene68436:CDS |
| TTTCCACCTAGCTCGGTACT+TGG | 0.492435 | 1.1:-66165767 | None:intergenic |
| AATTGCAAGGTATGGAATGT+AGG | 0.494031 | 1.1:+66166018 | MS.gene68436:CDS |
| CATATATTCTCCAGCCTCAA+GGG | 0.510954 | 1.1:+66165813 | MS.gene68436:CDS |
| CACCTAGCTCGGTACTTGGT+AGG | 0.514136 | 1.1:-66165763 | None:intergenic |
| CCATATATTCTCCAGCCTCA+AGG | 0.515434 | 1.1:+66165812 | MS.gene68436:CDS |
| CATTCCATTTCCACCTAGCT+CGG | 0.529297 | 1.1:-66165774 | None:intergenic |
| TGATGTTAGGCAACTTTCTG+TGG | 0.540828 | 1.1:-66165846 | None:intergenic |
| GATGCTGGGCTTGGACTCCA+TGG | 0.556025 | 1.1:+66165922 | MS.gene68436:CDS |
| GTGGAGCAGTTAGCCCCTTG+AGG | 0.556661 | 1.1:-66165827 | None:intergenic |
| AGTGGGTCAAAGAGGATGCT+GGG | 0.559368 | 1.1:+66165908 | MS.gene68436:CDS |
| GAAACTAACATGAGAACTCA+AGG | 0.562013 | 1.1:+66165965 | MS.gene68436:CDS |
| CATGAGGACCATGAATGTCA+AGG | 0.562630 | 1.1:+66164283 | None:intergenic |
| CCATACCTTGCAATTCCTTG+AGG | 0.577435 | 1.1:-66166010 | None:intergenic |
| ATGAGGACCATGAATGTCAA+GGG | 0.579702 | 1.1:+66164284 | MS.gene68436:CDS |
| TTAGTTTCACTCCAGATCAA+AGG | 0.583008 | 1.1:-66165950 | None:intergenic |
| CTTACATGCTCTTTCAAGCA+TGG | 0.593170 | 1.1:-66165684 | None:intergenic |
| GTATTGCAGAAGTATAGGCT+TGG | 0.594234 | 1.1:+66164439 | MS.gene68436:intron |
| GACCTACCAAGTACCGAGCT+AGG | 0.595643 | 1.1:+66165761 | MS.gene68436:CDS |
| TCATATCTTCTAGAAAGCCC+TGG | 0.597094 | 1.1:+66164717 | MS.gene68436:CDS |
| ATATAGGGGCCATGAAGTCA+AGG | 0.600134 | 1.1:+66164881 | MS.gene68436:intron |
| ATCAGAAGCTGGTAACTTTG+GGG | 0.602195 | 1.1:-66164754 | None:intergenic |
| TAAGCTACATTTACTAGTGG+AGG | 0.603652 | 1.1:+66164935 | MS.gene68436:CDS |
| AAGTAAGCTACATTTACTAG+TGG | 0.617641 | 1.1:+66164932 | MS.gene68436:CDS |
| TGAAAGAGCATGTAAGATGT+TGG | 0.619319 | 1.1:+66165691 | MS.gene68436:CDS |
| TCAATCCTCAAGGAATTGCA+AGG | 0.620095 | 1.1:+66166005 | MS.gene68436:CDS |
| TTAACCCAAGTCAATCCTCA+AGG | 0.626775 | 1.1:+66165995 | MS.gene68436:CDS |
| CACTAGAAGGATCACCTAGT+GGG | 0.632200 | 1.1:+66165891 | MS.gene68436:CDS |
| AATTCCTTGAGGATTGACTT+GGG | 0.633351 | 1.1:-66165999 | None:intergenic |
| GATCACCTAGTGGGTCAAAG+AGG | 0.638628 | 1.1:+66165900 | MS.gene68436:CDS |
| ATATATTCTCCAGCCTCAAG+GGG | 0.645538 | 1.1:+66165814 | MS.gene68436:CDS |
| CCAGATCAAAGGTGATACCA+TGG | 0.651921 | 1.1:-66165939 | None:intergenic |
| AGCATCCTCTTTGACCCACT+AGG | 0.660253 | 1.1:-66165905 | None:intergenic |
| ACATCACTTGAAAGTCTCAG+AGG | 0.667131 | 1.1:+66165863 | MS.gene68436:CDS |
| AAATTCGCCAAGATGCAGAA+CGG | 0.668751 | 1.1:+66165651 | MS.gene68436:CDS |
| ACACTAGAAGGATCACCTAG+TGG | 0.682794 | 1.1:+66165890 | MS.gene68436:CDS |
| CTACCAAGTACCGAGCTAGG+TGG | 0.694297 | 1.1:+66165764 | MS.gene68436:CDS |
| TAGGGGCCATGAAGTCAAGG+AGG | 0.733476 | 1.1:+66164884 | MS.gene68436:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATCAATTTGAATTATA+TGG | + | chr1.1:66164507-66164526 | MS.gene68436:intron | 10.0% |
| !! | TGATTAATTATGAAATATTA+TGG | + | chr1.1:66165289-66165308 | MS.gene68436:intron | 10.0% |
| !!! | TTTTTTTTTTGTTGTTTTTT+TGG | + | chr1.1:66164689-66164708 | MS.gene68436:intron | 10.0% |
| !! | AACTTCTATAAAACTTAATA+AGG | - | chr1.1:66165539-66165558 | None:intergenic | 15.0% |
| !! | AATATAACATTATAGAGTTA+GGG | + | chr1.1:66165070-66165089 | MS.gene68436:intron | 15.0% |
| !! | ATAGAAGTTAAGAATTATTA+TGG | + | chr1.1:66165489-66165508 | MS.gene68436:intron | 15.0% |
| !!! | ATTTAAGATACCAATTAAAT+TGG | - | chr1.1:66165020-66165039 | None:intergenic | 15.0% |
| !!! | TTATTTTAGACCAATTTAAT+TGG | + | chr1.1:66165007-66165026 | MS.gene68436:intron | 15.0% |
| !! | ATTATGAAATATTATGGTGT+TGG | + | chr1.1:66165295-66165314 | MS.gene68436:intron | 20.0% |
| !! | CAATATAACATTATAGAGTT+AGG | + | chr1.1:66165069-66165088 | MS.gene68436:intron | 20.0% |
| !! | GAAGTTAAGAATTATTATGT+TGG | + | chr1.1:66165492-66165511 | MS.gene68436:intron | 20.0% |
| !! | TTCATAATTAATCATGTCTA+CGG | - | chr1.1:66165283-66165302 | None:intergenic | 20.0% |
| !! | TTTGTTTAATTATGTATCAC+TGG | + | chr1.1:66164557-66164576 | MS.gene68436:intron | 20.0% |
| !!! | TTTTTGTTGTTTTTTTGGAA+GGG | + | chr1.1:66164694-66164713 | MS.gene68436:intron | 20.0% |
| !!! | TTTTTTGTTGTTTTTTTGGA+AGG | + | chr1.1:66164693-66164712 | MS.gene68436:intron | 20.0% |
| !!! | TTTTTTTTTACTGTAGTTTG+TGG | + | chr1.1:66165429-66165448 | MS.gene68436:intron | 20.0% |
| ! | AAGAATTATTATGGTATTGC+AGG | + | chr1.1:66165613-66165632 | MS.gene68436:intron | 25.0% |
| ! | GTTATATAGATTCTGTAGTA+TGG | + | chr1.1:66165152-66165171 | MS.gene68436:intron | 25.0% |
| !! | TAAGAATTTCATTGTTTCTC+TGG | + | chr1.1:66164786-66164805 | MS.gene68436:intron | 25.0% |
| !! | TTTATGTATTGCAGAAGTAT+AGG | + | chr1.1:66164434-66164453 | MS.gene68436:intron | 25.0% |
| !!! | TGTTTGTAATTTTAACCTGT+TGG | + | chr1.1:66164630-66164649 | MS.gene68436:intron | 25.0% |
| !!! | TTCGATCATTTTTTGACAAT+AGG | - | chr1.1:66165098-66165117 | None:intergenic | 25.0% |
| AAATGATCGAATCTCAACTT+AGG | + | chr1.1:66165107-66165126 | MS.gene68436:intron | 30.0% | |
| AAGTAAGCTACATTTACTAG+TGG | + | chr1.1:66164932-66164951 | MS.gene68436:CDS | 30.0% | |
| CAATCTCATGTCATATATAG+GGG | + | chr1.1:66164867-66164886 | MS.gene68436:intron | 30.0% | |
| GCAATCTCATGTCATATATA+GGG | + | chr1.1:66164866-66164885 | MS.gene68436:intron | 30.0% | |
| TCATTTAAAGAGTCATCTTC+AGG | + | chr1.1:66164319-66164338 | MS.gene68436:CDS | 30.0% | |
| TGCAATCTCATGTCATATAT+AGG | + | chr1.1:66164865-66164884 | MS.gene68436:intron | 30.0% | |
| TGGTATTGTAAGTAGATTGT+GGG | + | chr1.1:66165372-66165391 | MS.gene68436:intron | 30.0% | |
| TTGGTATTGTAAGTAGATTG+TGG | + | chr1.1:66165371-66165390 | MS.gene68436:intron | 30.0% | |
| ! | AAGTGTCATTCAGACATAAA+GGG | - | chr1.1:66164827-66164846 | None:intergenic | 30.0% |
| ! | TAGAATCCTTTTCAATAGAC+TGG | + | chr1.1:66164580-66164599 | MS.gene68436:intron | 30.0% |
| ! | TTTTTCTGTCTTTGGCAATT+GGG | - | chr1.1:66165200-66165219 | None:intergenic | 30.0% |
| ACAATCATTGCTGTACAATC+AGG | - | chr1.1:66165398-66165417 | None:intergenic | 35.0% | |
| ATGCAACCAGTCTATTGAAA+AGG | - | chr1.1:66164589-66164608 | None:intergenic | 35.0% | |
| CAATTGCCAAAGACAGAAAA+AGG | + | chr1.1:66165199-66165218 | MS.gene68436:intron | 35.0% | |
| GAAACTAACATGAGAACTCA+AGG | + | chr1.1:66165965-66165984 | MS.gene68436:CDS | 35.0% | |
| TAAGCTACATTTACTAGTGG+AGG | + | chr1.1:66164935-66164954 | MS.gene68436:CDS | 35.0% | |
| TATGGAAAGTAGATCAGAGA+AGG | + | chr1.1:66165170-66165189 | MS.gene68436:intron | 35.0% | |
| TGAGATTGCAATTCTCAGTT+CGG | - | chr1.1:66164855-66164874 | None:intergenic | 35.0% | |
| TGTGAAGAGTTAGAGGTTAA+TGG | + | chr1.1:66165253-66165272 | MS.gene68436:intron | 35.0% | |
| TTAGTTTCACTCCAGATCAA+AGG | - | chr1.1:66165953-66165972 | None:intergenic | 35.0% | |
| ! | AACCTGTTGGTTATTGTCTA+TGG | + | chr1.1:66164643-66164662 | MS.gene68436:intron | 35.0% |
| ! | AATTCCTTGAGGATTGACTT+GGG | - | chr1.1:66166002-66166021 | None:intergenic | 35.0% |
| ! | CAAGTGTCATTCAGACATAA+AGG | - | chr1.1:66164828-66164847 | None:intergenic | 35.0% |
| ! | CTTTTGCCTTTTTCTGTCTT+TGG | - | chr1.1:66165208-66165227 | None:intergenic | 35.0% |
| ! | CTTTTTCTGTCTTTGGCAAT+TGG | - | chr1.1:66165201-66165220 | None:intergenic | 35.0% |
| ! | TGAAAGAGCATGTAAGATGT+TGG | + | chr1.1:66165691-66165710 | MS.gene68436:CDS | 35.0% |
| ! | TGAGACTTTCAAGTGATGTT+AGG | - | chr1.1:66165862-66165881 | None:intergenic | 35.0% |
| AAATTCGCCAAGATGCAGAA+CGG | + | chr1.1:66165651-66165670 | MS.gene68436:CDS | 40.0% | |
| ACATCACTTGAAAGTCTCAG+AGG | + | chr1.1:66165863-66165882 | MS.gene68436:CDS | 40.0% | |
| AGATGCAGAACGGAGATATA+TGG | + | chr1.1:66165661-66165680 | MS.gene68436:CDS | 40.0% | |
| AGCCATAGACAATAACCAAC+AGG | - | chr1.1:66164648-66164667 | None:intergenic | 40.0% | |
| ATATATTCTCCAGCCTCAAG+GGG | + | chr1.1:66165814-66165833 | MS.gene68436:CDS | 40.0% | |
| ATCAGAAGCTGGTAACTTTG+GGG | - | chr1.1:66164757-66164776 | None:intergenic | 40.0% | |
| ATGAGGACCATGAATGTCAA+GGG | + | chr1.1:66164284-66164303 | MS.gene68436:CDS | 40.0% | |
| CAATTCCTTGAGGATTGACT+TGG | - | chr1.1:66166003-66166022 | None:intergenic | 40.0% | |
| CATATATTCTCCAGCCTCAA+GGG | + | chr1.1:66165813-66165832 | MS.gene68436:CDS | 40.0% | |
| CATCAGAAGCTGGTAACTTT+GGG | - | chr1.1:66164758-66164777 | None:intergenic | 40.0% | |
| CTTACATGCTCTTTCAAGCA+TGG | - | chr1.1:66165687-66165706 | None:intergenic | 40.0% | |
| GAATCTCAACTTAGGTGGTT+TGG | + | chr1.1:66165115-66165134 | MS.gene68436:intron | 40.0% | |
| GTGAAACTGTGAAGAGTTAG+AGG | + | chr1.1:66165246-66165265 | MS.gene68436:intron | 40.0% | |
| TATATCTCCGTTCTGCATCT+TGG | - | chr1.1:66165661-66165680 | None:intergenic | 40.0% | |
| TCAATCCTCAAGGAATTGCA+AGG | + | chr1.1:66166005-66166024 | MS.gene68436:CDS | 40.0% | |
| TGATCGAATCTCAACTTAGG+TGG | + | chr1.1:66165110-66165129 | MS.gene68436:intron | 40.0% | |
| TGATGTTAGGCAACTTTCTG+TGG | - | chr1.1:66165849-66165868 | None:intergenic | 40.0% | |
| TGTCAAACCCTTGACATTCA+TGG | - | chr1.1:66164294-66164313 | None:intergenic | 40.0% | |
| TTAACCCAAGTCAATCCTCA+AGG | + | chr1.1:66165995-66166014 | MS.gene68436:CDS | 40.0% | |
| TTAATGCCTCCTTGACTTCA+TGG | - | chr1.1:66164893-66164912 | None:intergenic | 40.0% | |
| ! | GTATTGCAGAAGTATAGGCT+TGG | + | chr1.1:66164439-66164458 | MS.gene68436:intron | 40.0% |
| ! | TCATATCTTCTAGAAAGCCC+TGG | + | chr1.1:66164717-66164736 | MS.gene68436:CDS | 40.0% |
| ! | TGTTGGTTGATCTGTGTATC+CGG | + | chr1.1:66165312-66165331 | MS.gene68436:intron | 40.0% |
| !! | AGCTGGAAAAGATTTTGACG+AGG | + | chr1.1:66164468-66164487 | MS.gene68436:CDS | 40.0% |
| !! | GCTGGAAAAGATTTTGACGA+GGG | + | chr1.1:66164469-66164488 | MS.gene68436:CDS | 40.0% |
| !!! | GCTTGGCTGTTTTTGTTGAT+TGG | + | chr1.1:66165352-66165371 | MS.gene68436:intron | 40.0% |
| ACACTAGAAGGATCACCTAG+TGG | + | chr1.1:66165890-66165909 | MS.gene68436:CDS | 45.0% | |
| ATATAGGGGCCATGAAGTCA+AGG | + | chr1.1:66164881-66164900 | MS.gene68436:intron | 45.0% | |
| CACTAGAAGGATCACCTAGT+GGG | + | chr1.1:66165891-66165910 | MS.gene68436:CDS | 45.0% | |
| CATTCCATTTCCACCTAGCT+CGG | - | chr1.1:66165777-66165796 | None:intergenic | 45.0% | |
| CCAGATCAAAGGTGATACCA+TGG | - | chr1.1:66165942-66165961 | None:intergenic | 45.0% | |
| CCATACCTTGCAATTCCTTG+AGG | - | chr1.1:66166013-66166032 | None:intergenic | 45.0% | |
| CCATATATTCTCCAGCCTCA+AGG | + | chr1.1:66165812-66165831 | MS.gene68436:CDS | 45.0% | |
| CCATGGTATCACCTTTGATC+TGG | + | chr1.1:66165939-66165958 | MS.gene68436:CDS | 45.0% | |
| CCTCAAGGAATTGCAAGGTA+TGG | + | chr1.1:66166010-66166029 | MS.gene68436:CDS | 45.0% | |
| CCTTGAGGCTGGAGAATATA+TGG | - | chr1.1:66165815-66165834 | None:intergenic | 45.0% | |
| CTCAGAGGATTGACACTAGA+AGG | + | chr1.1:66165878-66165897 | MS.gene68436:CDS | 45.0% | |
| CTCATCAAGTGGACAATGCT+TGG | + | chr1.1:66165335-66165354 | MS.gene68436:intron | 45.0% | |
| GCATCAGAAGCTGGTAACTT+TGG | - | chr1.1:66164759-66164778 | None:intergenic | 45.0% | |
| TACTCGTTTGCATCAGAAGC+TGG | - | chr1.1:66164768-66164787 | None:intergenic | 45.0% | |
| TTTGACGAGGGATGCAAAGA+TGG | + | chr1.1:66164481-66164500 | MS.gene68436:CDS | 45.0% | |
| ! | GGGATGAGTTTTCAGTACCA+GGG | - | chr1.1:66164737-66164756 | None:intergenic | 45.0% |
| ! | TATAGGCTTGGTAAGCAAGC+TGG | + | chr1.1:66164451-66164470 | MS.gene68436:CDS | 45.0% |
| ! | TTAGGTGGTTTGGACATGTG+TGG | + | chr1.1:66165125-66165144 | MS.gene68436:intron | 45.0% |
| !! | GGAGGCATTAAGAGCACAAA+TGG | + | chr1.1:66164902-66164921 | MS.gene68436:CDS | 45.0% |
| AGCATCCTCTTTGACCCACT+AGG | - | chr1.1:66165908-66165927 | None:intergenic | 50.0% | |
| AGTGGGTCAAAGAGGATGCT+GGG | + | chr1.1:66165908-66165927 | MS.gene68436:CDS | 50.0% | |
| GCATTGTCCACTTGATGAGC+CGG | - | chr1.1:66165334-66165353 | None:intergenic | 50.0% | |
| TGTGTATCCGGCTCATCAAG+TGG | + | chr1.1:66165324-66165343 | MS.gene68436:intron | 50.0% | |
| TTTCCACCTAGCTCGGTACT+TGG | - | chr1.1:66165770-66165789 | None:intergenic | 50.0% | |
| ! | AGTACCGAGCTAGGTGGAAA+TGG | + | chr1.1:66165770-66165789 | MS.gene68436:CDS | 50.0% |
| ! | GATCACCTAGTGGGTCAAAG+AGG | + | chr1.1:66165900-66165919 | MS.gene68436:CDS | 50.0% |
| ! | GGGGATGAGTTTTCAGTACC+AGG | - | chr1.1:66164738-66164757 | None:intergenic | 50.0% |
| ! | TAGTGGGTCAAAGAGGATGC+TGG | + | chr1.1:66165907-66165926 | MS.gene68436:CDS | 50.0% |
| CACCTAGCTCGGTACTTGGT+AGG | - | chr1.1:66165766-66165785 | None:intergenic | 55.0% | |
| GTCAAAGAGGATGCTGGGCT+TGG | + | chr1.1:66165913-66165932 | MS.gene68436:CDS | 55.0% | |
| TAGGGGCCATGAAGTCAAGG+AGG | + | chr1.1:66164884-66164903 | MS.gene68436:intron | 55.0% | |
| ! | GGTGGTTTGGACATGTGTGG+AGG | + | chr1.1:66165128-66165147 | MS.gene68436:intron | 55.0% |
| !! | CTACCAAGTACCGAGCTAGG+TGG | + | chr1.1:66165764-66165783 | MS.gene68436:CDS | 55.0% |
| !! | GACCTACCAAGTACCGAGCT+AGG | + | chr1.1:66165761-66165780 | MS.gene68436:CDS | 55.0% |
| AGCAGTTAGCCCCTTGAGGC+TGG | - | chr1.1:66165826-66165845 | None:intergenic | 60.0% | |
| GATGCTGGGCTTGGACTCCA+TGG | + | chr1.1:66165922-66165941 | MS.gene68436:CDS | 60.0% | |
| GTGGAGCAGTTAGCCCCTTG+AGG | - | chr1.1:66165830-66165849 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 66164284 | 66166039 | 66164284 | ID=MS.gene68436 |
| chr1.1 | mRNA | 66164284 | 66166039 | 66164284 | ID=MS.gene68436.t1;Parent=MS.gene68436 |
| chr1.1 | exon | 66164284 | 66164340 | 66164284 | ID=MS.gene68436.t1.exon1;Parent=MS.gene68436.t1 |
| chr1.1 | CDS | 66164284 | 66164340 | 66164284 | ID=cds.MS.gene68436.t1;Parent=MS.gene68436.t1 |
| chr1.1 | exon | 66164448 | 66164502 | 66164448 | ID=MS.gene68436.t1.exon2;Parent=MS.gene68436.t1 |
| chr1.1 | CDS | 66164448 | 66164502 | 66164448 | ID=cds.MS.gene68436.t1;Parent=MS.gene68436.t1 |
| chr1.1 | exon | 66164715 | 66164784 | 66164715 | ID=MS.gene68436.t1.exon3;Parent=MS.gene68436.t1 |
| chr1.1 | CDS | 66164715 | 66164784 | 66164715 | ID=cds.MS.gene68436.t1;Parent=MS.gene68436.t1 |
| chr1.1 | exon | 66164887 | 66164956 | 66164887 | ID=MS.gene68436.t1.exon4;Parent=MS.gene68436.t1 |
| chr1.1 | CDS | 66164887 | 66164956 | 66164887 | ID=cds.MS.gene68436.t1;Parent=MS.gene68436.t1 |
| chr1.1 | exon | 66165635 | 66166039 | 66165635 | ID=MS.gene68436.t1.exon5;Parent=MS.gene68436.t1 |
| chr1.1 | CDS | 66165635 | 66166039 | 66165635 | ID=cds.MS.gene68436.t1;Parent=MS.gene68436.t1 |
| Gene Sequence |
| Protein sequence |
