Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68756.t1 | QCE16884.1 | 59.7 | 812 | 157 | 10 | 27 | 672 | 389 | 1196 | 6.20E-268 | 933.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68756.t1 | Q6Z4G8 | 45.1 | 430 | 220 | 8 | 1 | 422 | 1 | 422 | 3.1e-111 | 404.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68756.t1 | A0A4D6NVV6 | 59.7 | 812 | 157 | 10 | 27 | 672 | 389 | 1196 | 4.5e-268 | 933.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049424 | MS.gene68756 | 0.817638 | 2.97E-52 | -1.69E-46 |
MS.gene050277 | MS.gene68756 | 0.805439 | 1.33E-49 | -1.69E-46 |
MS.gene057079 | MS.gene68756 | 0.803404 | 3.54E-49 | -1.69E-46 |
MS.gene058238 | MS.gene68756 | 0.807792 | 4.25E-50 | -1.69E-46 |
MS.gene060297 | MS.gene68756 | 0.80875 | 2.66E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68756.t1 | MTR_3g117690 | 94.508 | 437 | 20 | 1 | 1 | 437 | 1 | 433 | 0.0 | 879 |
MS.gene68756.t1 | MTR_3g117700 | 96.400 | 250 | 9 | 0 | 423 | 672 | 12 | 261 | 2.26e-170 | 487 |
MS.gene68756.t1 | MTR_7g015950 | 44.444 | 432 | 222 | 7 | 16 | 439 | 14 | 435 | 9.27e-136 | 406 |
MS.gene68756.t1 | MTR_6g015875 | 43.274 | 446 | 234 | 8 | 2 | 439 | 1 | 435 | 2.47e-132 | 397 |
MS.gene68756.t1 | MTR_2g462010 | 45.131 | 421 | 217 | 7 | 7 | 419 | 12 | 426 | 1.25e-129 | 390 |
MS.gene68756.t1 | MTR_7g015960 | 43.133 | 415 | 218 | 7 | 18 | 421 | 3 | 410 | 2.68e-125 | 379 |
MS.gene68756.t1 | MTR_6g015880 | 42.005 | 419 | 225 | 7 | 16 | 423 | 1 | 412 | 8.20e-125 | 377 |
MS.gene68756.t1 | MTR_2g104890 | 42.222 | 405 | 220 | 7 | 27 | 422 | 26 | 425 | 1.23e-120 | 367 |
MS.gene68756.t1 | MTR_2g462000 | 38.914 | 442 | 246 | 8 | 14 | 440 | 6 | 438 | 1.90e-116 | 356 |
MS.gene68756.t1 | MTR_7g015960 | 43.432 | 373 | 198 | 6 | 55 | 421 | 35 | 400 | 3.16e-111 | 342 |
MS.gene68756.t1 | MTR_6g015865 | 42.742 | 372 | 189 | 9 | 59 | 420 | 1 | 358 | 1.65e-104 | 322 |
MS.gene68756.t1 | MTR_0173s0020 | 84.146 | 82 | 13 | 0 | 580 | 661 | 1 | 82 | 4.98e-39 | 139 |
MS.gene68756.t1 | MTR_2g034950 | 26.477 | 457 | 270 | 17 | 36 | 442 | 208 | 648 | 2.95e-35 | 142 |
MS.gene68756.t1 | MTR_4g121080 | 24.586 | 423 | 262 | 15 | 36 | 409 | 204 | 618 | 2.99e-34 | 139 |
MS.gene68756.t1 | MTR_2g083210 | 26.711 | 453 | 256 | 22 | 37 | 438 | 226 | 653 | 2.11e-31 | 130 |
MS.gene68756.t1 | MTR_5g005590 | 25.754 | 431 | 252 | 19 | 37 | 416 | 210 | 623 | 2.63e-28 | 121 |
MS.gene68756.t1 | MTR_1g094635 | 55.738 | 61 | 1 | 1 | 428 | 488 | 7 | 41 | 1.02e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68756.t1 | AT3G02210 | 43.115 | 443 | 231 | 10 | 8 | 440 | 11 | 442 | 2.02e-131 | 395 |
MS.gene68756.t1 | AT3G29810 | 47.355 | 397 | 198 | 7 | 28 | 419 | 27 | 417 | 1.75e-130 | 392 |
MS.gene68756.t1 | AT5G60920 | 43.468 | 421 | 222 | 8 | 13 | 422 | 19 | 434 | 5.78e-126 | 381 |
MS.gene68756.t1 | AT5G15630 | 43.704 | 405 | 211 | 7 | 30 | 426 | 21 | 416 | 7.65e-124 | 375 |
MS.gene68756.t1 | AT5G60920 | 43.367 | 392 | 207 | 7 | 41 | 422 | 1 | 387 | 1.09e-117 | 358 |
MS.gene68756.t1 | AT4G34840 | 63.008 | 246 | 91 | 0 | 427 | 672 | 9 | 254 | 1.87e-116 | 349 |
MS.gene68756.t1 | AT4G38800 | 65.164 | 244 | 85 | 0 | 429 | 672 | 24 | 267 | 3.14e-115 | 346 |
MS.gene68756.t1 | AT5G15630 | 43.117 | 385 | 202 | 7 | 51 | 427 | 6 | 381 | 8.57e-115 | 350 |
MS.gene68756.t1 | AT4G34840 | 63.948 | 233 | 84 | 0 | 440 | 672 | 1 | 233 | 5.29e-111 | 334 |
MS.gene68756.t1 | AT5G15630 | 42.706 | 377 | 199 | 7 | 59 | 427 | 1 | 368 | 5.96e-111 | 340 |
MS.gene68756.t1 | AT5G15630 | 42.706 | 377 | 199 | 7 | 59 | 427 | 1 | 368 | 5.96e-111 | 340 |
MS.gene68756.t1 | AT1G09790 | 40.235 | 425 | 225 | 11 | 10 | 418 | 1 | 412 | 1.89e-103 | 322 |
MS.gene68756.t1 | AT1G09790 | 39.450 | 436 | 224 | 11 | 10 | 418 | 1 | 423 | 7.05e-103 | 321 |
MS.gene68756.t1 | AT4G34840 | 66.502 | 203 | 68 | 0 | 470 | 672 | 2 | 204 | 2.61e-97 | 298 |
MS.gene68756.t1 | AT5G15630 | 44.444 | 324 | 165 | 6 | 30 | 345 | 21 | 337 | 2.10e-95 | 298 |
MS.gene68756.t1 | AT4G34840 | 61.538 | 182 | 70 | 0 | 426 | 607 | 8 | 189 | 7.16e-82 | 257 |
MS.gene68756.t1 | AT4G34840 | 61.538 | 182 | 70 | 0 | 426 | 607 | 8 | 189 | 7.16e-82 | 257 |
MS.gene68756.t1 | AT4G16120 | 26.818 | 440 | 243 | 21 | 36 | 416 | 216 | 635 | 3.02e-36 | 145 |
MS.gene68756.t1 | AT5G49270 | 27.314 | 443 | 260 | 20 | 25 | 416 | 205 | 636 | 9.73e-35 | 140 |
MS.gene68756.t1 | AT4G27110 | 26.478 | 423 | 261 | 14 | 36 | 415 | 218 | 633 | 3.58e-32 | 133 |
MS.gene68756.t1 | AT3G20580 | 27.230 | 426 | 252 | 17 | 37 | 415 | 229 | 643 | 5.68e-30 | 126 |
MS.gene68756.t1 | AT3G16860 | 25.175 | 429 | 249 | 19 | 37 | 409 | 210 | 622 | 1.43e-29 | 125 |
MS.gene68756.t1 | AT5G60950 | 34.123 | 211 | 121 | 8 | 10 | 216 | 4 | 200 | 2.00e-26 | 107 |
Find 142 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTCAGTGTCCTTAGATTT+TGG | 0.138185 | 3.2:+92910337 | MS.gene68756:CDS |
TGAAGAATTCCTACAAAATT+TGG | 0.166272 | 3.2:+92917233 | MS.gene68756:CDS |
CCTGGTAAAGATCCTTCTTT+TGG | 0.203643 | 3.2:+92913710 | MS.gene68756:CDS |
CCGTTGAAATATATTCTTCT+TGG | 0.243001 | 3.2:-92911587 | None:intergenic |
AAAATTCACTGTCTTGTATA+AGG | 0.257075 | 3.2:+92910980 | MS.gene68756:CDS |
ATTTACCAACGTATGGAAAA+TGG | 0.258226 | 3.2:+92909504 | MS.gene68756:CDS |
GTCTCAATTTGAACTTGATT+TGG | 0.264829 | 3.2:+92913687 | MS.gene68756:CDS |
ACTACTCTTTGCACTTTATC+AGG | 0.264891 | 3.2:+92909333 | MS.gene68756:CDS |
CTGCTGGTGGCTTCAAGGCC+AGG | 0.284627 | 3.2:+92913822 | MS.gene68756:CDS |
CGTACCCAAGGAACACCTTC+TGG | 0.300889 | 3.2:-92913644 | None:intergenic |
TCAATAGAAACTACTCTAAC+TGG | 0.324365 | 3.2:+92911237 | MS.gene68756:CDS |
AGGATGGACATGGGCTAATA+AGG | 0.327330 | 3.2:+92909988 | MS.gene68756:CDS |
AGCTGTAAGTTGTTGCCTTT+TGG | 0.343327 | 3.2:-92911289 | None:intergenic |
TGGCACTGCTGGTGGCTTCA+AGG | 0.343540 | 3.2:+92913817 | MS.gene68756:CDS |
GCCATGAATGTAACATTATT+AGG | 0.347374 | 3.2:-92910271 | None:intergenic |
GTTACAGAAATGTTCCCATT+TGG | 0.348199 | 3.2:-92909474 | None:intergenic |
ATCATTAATGCTGGCACTGC+TGG | 0.358624 | 3.2:+92913806 | MS.gene68756:CDS |
TCTCTGTCCTCCAAAATCTA+AGG | 0.365267 | 3.2:-92910347 | None:intergenic |
AGCACTAAACTTTCGACTCT+TGG | 0.372426 | 3.2:+92911317 | MS.gene68756:CDS |
ACCTAATAATGTTACATTCA+TGG | 0.379441 | 3.2:+92910270 | MS.gene68756:CDS |
AAATGCCAATGGACTCGAAT+TGG | 0.382955 | 3.2:-92911158 | None:intergenic |
TGTAACAAGAGCAGAGGATA+TGG | 0.391669 | 3.2:-92913750 | None:intergenic |
TTAAGTTCCTTTACAAGGTT+GGG | 0.394633 | 3.2:-92915494 | None:intergenic |
TGCTGGTGGCTTCAAGGCCA+GGG | 0.397697 | 3.2:+92913823 | MS.gene68756:CDS |
TGTAACTTCTGCACTTGATC+TGG | 0.402973 | 3.2:+92917260 | MS.gene68756:CDS |
TGAATTATTGCATTCTGATA+AGG | 0.403226 | 3.2:+92911484 | MS.gene68756:CDS |
ACTTGATCTGGCTGTCGAAC+AGG | 0.406655 | 3.2:+92917272 | MS.gene68756:CDS |
ACGTATGGAAAATGGATATC+TGG | 0.412034 | 3.2:+92909512 | MS.gene68756:CDS |
TTGAAAACCATCATCAATAT+CGG | 0.412813 | 3.2:+92909939 | MS.gene68756:CDS |
CCAGCATTAATGATCAAATC+AGG | 0.413935 | 3.2:-92913797 | None:intergenic |
GACTATGACGATGTTGGAAA+TGG | 0.417905 | 3.2:-92913373 | None:intergenic |
ACATTCATGGCCCCAGGTCC+TGG | 0.420105 | 3.2:+92910283 | MS.gene68756:CDS |
TCCAACATCGTCATAGTCAT+TGG | 0.422187 | 3.2:+92913378 | MS.gene68756:CDS |
TGATGCAACTGTCAAAGATA+TGG | 0.423834 | 3.2:+92916920 | MS.gene68756:CDS |
TTGAGTAACTTACTGAGAAC+TGG | 0.424417 | 3.2:-92910376 | None:intergenic |
GTTCCTTGGGTACGTTATCA+TGG | 0.425081 | 3.2:+92913653 | MS.gene68756:CDS |
CTCCAGATGTGTTACAAAAC+AGG | 0.426308 | 3.2:+92910125 | MS.gene68756:CDS |
AGGTCAAATTTATTGACAAC+AGG | 0.430280 | 3.2:-92913506 | None:intergenic |
ATCCACCACAAGTGCAATTA+CGG | 0.431856 | 3.2:-92910942 | None:intergenic |
ATTAAGTTCCTTTACAAGGT+TGG | 0.433930 | 3.2:-92915495 | None:intergenic |
GCACTAAACTTTCGACTCTT+GGG | 0.439893 | 3.2:+92911318 | MS.gene68756:CDS |
AACCAGGCCAGGTGATCCTC+TGG | 0.443991 | 3.2:+92911085 | MS.gene68756:intron |
GGATTTAGACTTACAGGAAT+GGG | 0.445539 | 3.2:-92913905 | None:intergenic |
GGAGATATATCAACTATGAT+TGG | 0.446630 | 3.2:-92910106 | None:intergenic |
ATTTGACATTTACCAACGTA+TGG | 0.446651 | 3.2:+92909497 | MS.gene68756:CDS |
TGCAGATTGCTATGACCCTT+TGG | 0.457246 | 3.2:+92909449 | MS.gene68756:intron |
TATGACCCTTTGGATCCAAA+TGG | 0.475416 | 3.2:+92909459 | MS.gene68756:CDS |
TGTAACAACAGAGATACTAT+TGG | 0.478385 | 3.2:+92911520 | MS.gene68756:CDS |
CAATGAGTTGAAAGAATCAA+TGG | 0.481115 | 3.2:-92910188 | None:intergenic |
TACAAGGTTGGGTGTTTCAA+AGG | 0.482086 | 3.2:-92915483 | None:intergenic |
AGAACAATTATATGAATCAA+TGG | 0.485689 | 3.2:+92911183 | MS.gene68756:CDS |
GACAAACCAGGGTGGAAACT+AGG | 0.487857 | 3.2:+92909968 | MS.gene68756:CDS |
CTAACGGAGAGTTAGGATCT+TGG | 0.490412 | 3.2:-92913532 | None:intergenic |
GGGCTAATAAGGAGGTGATA+TGG | 0.492504 | 3.2:+92909999 | MS.gene68756:CDS |
TGAACTTGAAGTAAGAAACT+TGG | 0.493240 | 3.2:+92910219 | MS.gene68756:CDS |
TGTAAAGGAACTTAATCTAA+AGG | 0.497465 | 3.2:+92915502 | MS.gene68756:CDS |
TGTAGGAATTCTTCAGCAGT+TGG | 0.499721 | 3.2:-92917225 | None:intergenic |
CTACATGCCGATATTGATGA+TGG | 0.499965 | 3.2:-92909946 | None:intergenic |
ATTGCACTTGTGGTGGATGC+AGG | 0.500406 | 3.2:+92910947 | MS.gene68756:CDS |
AATTTGAACTTGATTTGGCC+TGG | 0.507460 | 3.2:+92913692 | MS.gene68756:CDS |
GAGAAAGAAACACAGCATAC+TGG | 0.509877 | 3.2:-92910889 | None:intergenic |
ATAGGGAATGTGTCAGGTAA+AGG | 0.510611 | 3.2:-92911626 | None:intergenic |
CTTTCGACTCTTGGGATCCA+AGG | 0.511668 | 3.2:+92911326 | MS.gene68756:CDS |
TGAAACACCCAACCTTGTAA+AGG | 0.516673 | 3.2:+92915487 | MS.gene68756:CDS |
ACTTGAAGTAAGAAACTTGG+AGG | 0.520529 | 3.2:+92910222 | MS.gene68756:CDS |
TTAGATTAAGTTCCTTTACA+AGG | 0.520921 | 3.2:-92915499 | None:intergenic |
ATGTTCCCATTTGGATCCAA+AGG | 0.522080 | 3.2:-92909465 | None:intergenic |
GTCACCAACAGTAGCTCCCC+TGG | 0.526826 | 3.2:-92913840 | None:intergenic |
GTCCATCCTAGTTTCCACCC+TGG | 0.526834 | 3.2:-92909974 | None:intergenic |
GACCCTCCCAGAGGATCACC+TGG | 0.528160 | 3.2:-92911092 | None:intergenic |
CCTGATTTGATCATTAATGC+TGG | 0.529062 | 3.2:+92913797 | MS.gene68756:CDS |
GAGCTACCATTTGGTAACAT+AGG | 0.529269 | 3.2:-92911644 | None:intergenic |
ATGACCCTTTGGATCCAAAT+GGG | 0.529823 | 3.2:+92909460 | MS.gene68756:CDS |
AGCTACCATTTGGTAACATA+GGG | 0.533530 | 3.2:-92911643 | None:intergenic |
ACATTCCCTATGTTACCAAA+TGG | 0.533820 | 3.2:+92911638 | MS.gene68756:CDS |
ATTAATGCTGGCACTGCTGG+TGG | 0.533938 | 3.2:+92913809 | MS.gene68756:CDS |
CAGGTGGCTAAATTGTCTAC+TGG | 0.538602 | 3.2:+92916849 | MS.gene68756:intron |
TGGTGCAATTGCAACTGATA+GGG | 0.539313 | 3.2:+92910030 | MS.gene68756:CDS |
GGTAACATAGGGAATGTGTC+AGG | 0.540580 | 3.2:-92911632 | None:intergenic |
AACGTGCTCGTTCAACATCC+CGG | 0.541070 | 3.2:+92911260 | MS.gene68756:CDS |
GCTGGTGGCTTCAAGGCCAG+GGG | 0.541743 | 3.2:+92913824 | MS.gene68756:CDS |
AGGATTTAGACTTACAGGAA+TGG | 0.544029 | 3.2:-92913906 | None:intergenic |
CATTCTGATAAGGACCGAGT+TGG | 0.544148 | 3.2:+92911494 | MS.gene68756:CDS |
AATTGTTCTTGAAATGCCAA+TGG | 0.545269 | 3.2:-92911169 | None:intergenic |
AGGTCAGACCATTGCTGTCG+TGG | 0.546361 | 3.2:+92910145 | MS.gene68756:CDS |
CGTTATCATGGAAAATTCAA+AGG | 0.546606 | 3.2:+92913665 | MS.gene68756:CDS |
ACTATGACGATGTTGGAAAT+GGG | 0.546835 | 3.2:-92913372 | None:intergenic |
AATTCCTTCACATTGCAAAA+CGG | 0.549918 | 3.2:+92911554 | MS.gene68756:CDS |
CCAAGAAGAATATATTTCAA+CGG | 0.550198 | 3.2:+92911587 | MS.gene68756:CDS |
CTACAAGTGTAACCAGGACC+TGG | 0.555495 | 3.2:-92910295 | None:intergenic |
AAATTGCAGGAACTTTAAGA+AGG | 0.556348 | 3.2:-92917164 | None:intergenic |
TGTGTCCAATTCGAGTCCAT+TGG | 0.557268 | 3.2:+92911153 | MS.gene68756:CDS |
CCAAAAGAAGGATCTTTACC+AGG | 0.561581 | 3.2:-92913710 | None:intergenic |
ACCAATGACTATGACGATGT+TGG | 0.562519 | 3.2:-92913379 | None:intergenic |
ACACTGTCAACCCCAAAAGA+AGG | 0.562843 | 3.2:-92913722 | None:intergenic |
AATGTTACATTCATGGCCCC+AGG | 0.567404 | 3.2:+92910277 | MS.gene68756:CDS |
TGTTCCCATTTGGATCCAAA+GGG | 0.567718 | 3.2:-92909464 | None:intergenic |
GTGGTGCAATTGCAACTGAT+AGG | 0.570375 | 3.2:+92910029 | MS.gene68756:CDS |
GGATCTTTCTTGCATGAATG+TGG | 0.580515 | 3.2:-92910085 | None:intergenic |
GGCCAGGTGATCCTCTGGGA+GGG | 0.580706 | 3.2:+92911090 | MS.gene68756:intron |
TCCAATATCAGCTATGCAGA+CGG | 0.581725 | 3.2:+92913475 | MS.gene68756:intron |
CCTTCACATTGCAAAACGGA+TGG | 0.585623 | 3.2:+92911558 | MS.gene68756:CDS |
CTCTTTAGATATGACACCGC+AGG | 0.586462 | 3.2:+92916875 | MS.gene68756:CDS |
GCTGTGACTGATATTATTGA+CGG | 0.587769 | 3.2:+92917195 | MS.gene68756:CDS |
GAGAGTTAGGATCTTGGATG+AGG | 0.588281 | 3.2:-92913526 | None:intergenic |
CCGTGCCGTAATTGCACTTG+TGG | 0.589325 | 3.2:+92910937 | MS.gene68756:CDS |
TACAAGTGTAACCAGGACCT+GGG | 0.590336 | 3.2:-92910294 | None:intergenic |
AAGGCCAGGGGAGCTACTGT+TGG | 0.594473 | 3.2:+92913836 | MS.gene68756:CDS |
ACCAGGCCAGGTGATCCTCT+GGG | 0.595178 | 3.2:+92911086 | MS.gene68756:intron |
AGCATATGTAACAAGAGCAG+AGG | 0.596717 | 3.2:-92913756 | None:intergenic |
TGCCGTAATTGCACTTGTGG+TGG | 0.598613 | 3.2:+92910940 | MS.gene68756:CDS |
TATCGGCATGTAGACAAACC+AGG | 0.601269 | 3.2:+92909956 | MS.gene68756:CDS |
GGTGATTGTTCATCTTACAG+TGG | 0.601678 | 3.2:+92910052 | MS.gene68756:CDS |
GGCGACCACCACGACAGCAA+TGG | 0.603178 | 3.2:-92910153 | None:intergenic |
TTTCCATGATAACGTACCCA+AGG | 0.610898 | 3.2:-92913656 | None:intergenic |
CTGTTGTTACAGAACCAACT+CGG | 0.624097 | 3.2:-92911508 | None:intergenic |
GGTGGAAACTAGGATGGACA+TGG | 0.626804 | 3.2:+92909978 | MS.gene68756:CDS |
AACCAGGGTGGAAACTAGGA+TGG | 0.631725 | 3.2:+92909972 | MS.gene68756:CDS |
TTGCACTTGTGGTGGATGCA+GGG | 0.633793 | 3.2:+92910948 | MS.gene68756:CDS |
GCAGGATGAATCATCAATCA+CGG | 0.637150 | 3.2:+92916893 | MS.gene68756:CDS |
TGCAACTGTCAAAGATATGG+AGG | 0.640472 | 3.2:+92916923 | MS.gene68756:CDS |
GGTGCAATTGCAACTGATAG+GGG | 0.643254 | 3.2:+92910031 | MS.gene68756:CDS |
TCAGACCATTGCTGTCGTGG+TGG | 0.652449 | 3.2:+92910148 | MS.gene68756:CDS |
ATCGGCATGTAGACAAACCA+GGG | 0.657988 | 3.2:+92909957 | MS.gene68756:CDS |
ACAATTATATGAATCAATGG+AGG | 0.658063 | 3.2:+92911186 | MS.gene68756:CDS |
GTGATTGATGATTCATCCTG+CGG | 0.661402 | 3.2:-92916891 | None:intergenic |
AGGCCAGGTGATCCTCTGGG+AGG | 0.662165 | 3.2:+92911089 | MS.gene68756:intron |
CCAAAATCTAAGGACACTGA+GGG | 0.662975 | 3.2:-92910337 | None:intergenic |
ATGGACATGGGCTAATAAGG+AGG | 0.668082 | 3.2:+92909991 | MS.gene68756:CDS |
TCCAAAATCTAAGGACACTG+AGG | 0.670946 | 3.2:-92910338 | None:intergenic |
TCGAATTGGACACATGTGGT+CGG | 0.675247 | 3.2:-92911144 | None:intergenic |
CCACAAGTGCAATTACGGCA+CGG | 0.680142 | 3.2:-92910937 | None:intergenic |
AATCAATGGCTCGCGCAGAG+AGG | 0.683123 | 3.2:-92910174 | None:intergenic |
AATGAGCTACAAGTGTAACC+AGG | 0.684974 | 3.2:-92910301 | None:intergenic |
TCATCATTTGACCCTCCCAG+AGG | 0.685950 | 3.2:-92911101 | None:intergenic |
ACAAGTGTAACCAGGACCTG+GGG | 0.692997 | 3.2:-92910293 | None:intergenic |
AATATCAGCTATGCAGACGG+AGG | 0.702961 | 3.2:+92913478 | MS.gene68756:intron |
GTGGAAACTAGGATGGACAT+GGG | 0.708007 | 3.2:+92909979 | MS.gene68756:CDS |
GGACTCGAATTGGACACATG+TGG | 0.712786 | 3.2:-92911148 | None:intergenic |
GGCATGTAGACAAACCAGGG+TGG | 0.723361 | 3.2:+92909960 | MS.gene68756:CDS |
GTGCAGCAGAAAGATATACA+CGG | 0.735130 | 3.2:-92909290 | None:intergenic |
GAGGTGATATGGTCAATGAG+TGG | 0.755250 | 3.2:+92910010 | MS.gene68756:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 92909273 | 92917335 | 92909273 | ID=MS.gene68756 |
chr3.2 | mRNA | 92909273 | 92917335 | 92909273 | ID=MS.gene68756.t1;Parent=MS.gene68756 |
chr3.2 | exon | 92909273 | 92909354 | 92909273 | ID=MS.gene68756.t1.exon1;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92909273 | 92909354 | 92909273 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92909454 | 92909533 | 92909454 | ID=MS.gene68756.t1.exon2;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92909454 | 92909533 | 92909454 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92909926 | 92910385 | 92909926 | ID=MS.gene68756.t1.exon3;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92909926 | 92910385 | 92909926 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92910839 | 92911001 | 92910839 | ID=MS.gene68756.t1.exon4;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92910839 | 92911001 | 92910839 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92911091 | 92911347 | 92911091 | ID=MS.gene68756.t1.exon5;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92911091 | 92911347 | 92911091 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92911444 | 92911659 | 92911444 | ID=MS.gene68756.t1.exon6;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92911444 | 92911659 | 92911444 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92913343 | 92913399 | 92913343 | ID=MS.gene68756.t1.exon7;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92913343 | 92913399 | 92913343 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92913486 | 92913549 | 92913486 | ID=MS.gene68756.t1.exon8;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92913486 | 92913549 | 92913486 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92913640 | 92913913 | 92913640 | ID=MS.gene68756.t1.exon9;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92913640 | 92913913 | 92913640 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92915449 | 92915523 | 92915449 | ID=MS.gene68756.t1.exon10;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92915449 | 92915523 | 92915449 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92916852 | 92916944 | 92916852 | ID=MS.gene68756.t1.exon11;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92916852 | 92916944 | 92916852 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
chr3.2 | exon | 92917138 | 92917335 | 92917138 | ID=MS.gene68756.t1.exon12;Parent=MS.gene68756.t1 |
chr3.2 | CDS | 92917138 | 92917335 | 92917138 | ID=cds.MS.gene68756.t1;Parent=MS.gene68756.t1 |
Gene Sequence |
Protein sequence |