Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68875.t1 | XP_003610489.2 | 98.9 | 187 | 1 | 1 | 1 | 187 | 1 | 186 | 5.00E-94 | 354 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68875.t1 | O48802 | 64.8 | 199 | 55 | 3 | 1 | 188 | 1 | 195 | 7.9e-64 | 245.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68875.t1 | G7JKF9 | 98.9 | 187 | 1 | 1 | 1 | 187 | 1 | 186 | 3.6e-94 | 354.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049382 | MS.gene68875 | 0.807385 | 5.19E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene68875 | 0.81535 | 9.67E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene68875 | -0.803694 | 3.08E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene68875 | 0.8835 | 4.26E-71 | -1.69E-46 |
| MS.gene050763 | MS.gene68875 | 0.883083 | 6.06E-71 | -1.69E-46 |
| MS.gene050987 | MS.gene68875 | 0.810955 | 8.91E-51 | -1.69E-46 |
| MS.gene053577 | MS.gene68875 | 0.802231 | 6.19E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene68875 | 0.858186 | 9.79E-63 | -1.69E-46 |
| MS.gene057929 | MS.gene68875 | 0.827665 | 1.38E-54 | -1.69E-46 |
| MS.gene058638 | MS.gene68875 | 0.812341 | 4.45E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene68875 | 0.804015 | 2.65E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene68875 | 0.82079 | 5.69E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68875.t1 | MTR_4g132780 | 98.404 | 188 | 2 | 1 | 1 | 188 | 1 | 187 | 1.39e-128 | 380 |
| MS.gene68875.t1 | MTR_1g012840 | 41.509 | 159 | 92 | 1 | 1 | 158 | 1 | 159 | 5.24e-35 | 131 |
| MS.gene68875.t1 | MTR_2g451540 | 40.854 | 164 | 92 | 2 | 5 | 164 | 2 | 164 | 1.94e-34 | 129 |
| MS.gene68875.t1 | MTR_7g059150 | 38.400 | 125 | 72 | 2 | 37 | 158 | 92 | 214 | 1.37e-20 | 87.4 |
| MS.gene68875.t1 | MTR_2g090135 | 37.097 | 124 | 73 | 2 | 37 | 157 | 95 | 216 | 3.33e-19 | 83.6 |
| MS.gene68875.t1 | MTR_2g090135 | 38.614 | 101 | 57 | 2 | 37 | 134 | 95 | 193 | 4.33e-16 | 73.9 |
| MS.gene68875.t1 | MTR_8g107280 | 32.203 | 118 | 74 | 2 | 44 | 161 | 483 | 594 | 9.94e-12 | 63.9 |
| MS.gene68875.t1 | MTR_2g078020 | 33.981 | 103 | 62 | 2 | 47 | 149 | 469 | 565 | 2.17e-11 | 63.2 |
| MS.gene68875.t1 | MTR_2g078020 | 33.981 | 103 | 62 | 2 | 47 | 149 | 469 | 565 | 3.18e-11 | 62.4 |
| MS.gene68875.t1 | MTR_2g067870 | 30.702 | 114 | 76 | 2 | 45 | 158 | 7 | 117 | 7.97e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68875.t1 | AT1G62390 | 65.957 | 188 | 49 | 3 | 1 | 177 | 1 | 184 | 6.09e-78 | 248 |
| MS.gene68875.t1 | AT2G25290 | 42.520 | 127 | 73 | 0 | 32 | 158 | 44 | 170 | 2.43e-30 | 118 |
| MS.gene68875.t1 | AT2G25290 | 42.520 | 127 | 73 | 0 | 32 | 158 | 44 | 170 | 2.43e-30 | 118 |
| MS.gene68875.t1 | AT2G25290 | 42.520 | 127 | 73 | 0 | 32 | 158 | 44 | 170 | 2.43e-30 | 118 |
| MS.gene68875.t1 | AT2G25290 | 42.520 | 127 | 73 | 0 | 32 | 158 | 44 | 170 | 2.43e-30 | 118 |
| MS.gene68875.t1 | AT4G32070 | 40.769 | 130 | 77 | 0 | 32 | 161 | 43 | 172 | 5.10e-29 | 114 |
| MS.gene68875.t1 | AT4G32070 | 40.769 | 130 | 77 | 0 | 32 | 161 | 43 | 172 | 5.10e-29 | 114 |
| MS.gene68875.t1 | AT5G20360 | 38.514 | 148 | 85 | 2 | 15 | 158 | 39 | 184 | 3.74e-26 | 105 |
| MS.gene68875.t1 | AT5G20360 | 38.514 | 148 | 85 | 2 | 15 | 158 | 39 | 184 | 3.74e-26 | 105 |
| MS.gene68875.t1 | AT5G20360 | 41.803 | 122 | 71 | 0 | 37 | 158 | 123 | 244 | 4.28e-26 | 105 |
| MS.gene68875.t1 | AT5G20360 | 41.803 | 122 | 71 | 0 | 37 | 158 | 123 | 244 | 4.28e-26 | 105 |
| MS.gene68875.t1 | AT5G20360 | 41.803 | 122 | 71 | 0 | 37 | 158 | 113 | 234 | 4.43e-26 | 105 |
| MS.gene68875.t1 | AT5G20360 | 41.803 | 122 | 71 | 0 | 37 | 158 | 33 | 154 | 5.69e-26 | 105 |
| MS.gene68875.t1 | AT5G20360 | 41.803 | 122 | 71 | 0 | 37 | 158 | 33 | 154 | 5.69e-26 | 105 |
| MS.gene68875.t1 | AT4G30480 | 31.098 | 164 | 96 | 3 | 10 | 170 | 87 | 236 | 3.72e-15 | 72.8 |
| MS.gene68875.t1 | AT3G58620 | 31.111 | 135 | 87 | 2 | 37 | 171 | 446 | 574 | 1.88e-13 | 68.9 |
| MS.gene68875.t1 | AT3G58620 | 31.111 | 135 | 87 | 2 | 37 | 171 | 446 | 574 | 3.83e-13 | 68.2 |
| MS.gene68875.t1 | AT4G30480 | 33.594 | 128 | 68 | 3 | 10 | 134 | 87 | 200 | 1.00e-11 | 62.4 |
| MS.gene68875.t1 | AT3G17970 | 33.913 | 115 | 70 | 2 | 44 | 158 | 478 | 586 | 5.71e-11 | 61.6 |
Find 65 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTGTACTTTGGCTCTTC+AGG | 0.248512 | 8.4:+1537849 | MS.gene68875:CDS |
| CAACCCCACCATTTGGTGTT+TGG | 0.286040 | 8.4:-1537612 | None:intergenic |
| TCAAGATGTGCAGTTGTTAT+TGG | 0.289033 | 8.4:+1537948 | MS.gene68875:CDS |
| TCCGTGGTGGCTCCTATTGC+TGG | 0.296717 | 8.4:+1538100 | MS.gene68875:CDS |
| ACCAAATGGTGGGGTTGAAT+TGG | 0.315838 | 8.4:+1537618 | MS.gene68875:CDS |
| AGCCCTATCAGGATGTGTTT+TGG | 0.326734 | 8.4:-1537758 | None:intergenic |
| TTCTTCGACGCAGGCCGTGC+TGG | 0.341743 | 8.4:-1538139 | None:intergenic |
| CAGAGATTGAGGGCTGCGTT+TGG | 0.343757 | 8.4:+1538009 | MS.gene68875:CDS |
| CGGCCTTCGCCTGCTGCGTT+AGG | 0.354738 | 8.4:+1538066 | MS.gene68875:CDS |
| AAGAAAATTATGGGGAAATC+AGG | 0.361902 | 8.4:+1537538 | None:intergenic |
| GAATAGAAGGTTTCAGAGTA+AGG | 0.367198 | 8.4:+1537687 | MS.gene68875:CDS |
| CGCCCAAAACACATCCTGAT+AGG | 0.369541 | 8.4:+1537755 | MS.gene68875:CDS |
| GGGCTTTGCTTCGTAGGGCT+CGG | 0.370895 | 8.4:+1537890 | MS.gene68875:CDS |
| AGGTTCAGCCGCAATTTGTC+CGG | 0.377457 | 8.4:+1537869 | MS.gene68875:CDS |
| AGAGATTGAGGGCTGCGTTT+GGG | 0.381653 | 8.4:+1538010 | MS.gene68875:CDS |
| TGAAAGAAGAAGGGAATAGA+AGG | 0.392126 | 8.4:+1537674 | MS.gene68875:CDS |
| GTGGCTCCTATTGCTGGATT+AGG | 0.394553 | 8.4:+1538106 | MS.gene68875:CDS |
| ATCCAAAGCATCCTTATGAT+TGG | 0.395798 | 8.4:-1537980 | None:intergenic |
| TTGTCCGGGCTTTGCTTCGT+AGG | 0.400759 | 8.4:+1537884 | MS.gene68875:CDS |
| TCCCAATCATAAGGATGCTT+TGG | 0.400869 | 8.4:+1537978 | MS.gene68875:CDS |
| TCCAATTCAACCCCACCATT+TGG | 0.402916 | 8.4:-1537619 | None:intergenic |
| ATCACAGATTCATAATCAAT+AGG | 0.414155 | 8.4:-1537823 | None:intergenic |
| TCGTAGGGCTCGGGCGTTTG+AGG | 0.421207 | 8.4:+1537900 | MS.gene68875:CDS |
| TGGATATTGCTCAGAGATTG+AGG | 0.427013 | 8.4:+1537998 | MS.gene68875:CDS |
| TTTCAGAGTAAGGATTATAC+TGG | 0.429564 | 8.4:+1537697 | MS.gene68875:CDS |
| GGCTTTGCTTCGTAGGGCTC+GGG | 0.434118 | 8.4:+1537891 | MS.gene68875:CDS |
| GGCTGCGTTTGGGCCTCGTC+AGG | 0.435769 | 8.4:+1538020 | MS.gene68875:CDS |
| AGCACGGCCTGCGTCGAAGA+AGG | 0.437490 | 8.4:+1538141 | MS.gene68875:CDS |
| GGATATTGCTCAGAGATTGA+GGG | 0.451571 | 8.4:+1537999 | MS.gene68875:CDS |
| GCACATGAAATGAAAGAAGA+AGG | 0.462119 | 8.4:+1537664 | MS.gene68875:CDS |
| TCCAAAGCATCCTTATGATT+GGG | 0.467802 | 8.4:-1537979 | None:intergenic |
| GGCTTCTGATCCCAATCATA+AGG | 0.472316 | 8.4:+1537969 | MS.gene68875:CDS |
| CACGGACCTAATCCAGCAAT+AGG | 0.475945 | 8.4:-1538112 | None:intergenic |
| GCAGAAGCACCTAACGCAGC+AGG | 0.476486 | 8.4:-1538075 | None:intergenic |
| ATCAGGTGGTAGAAGAAAGA+AGG | 0.476870 | 8.4:+1537555 | MS.gene68875:CDS |
| GAGCCCTACGAAGCAAAGCC+CGG | 0.482060 | 8.4:-1537888 | None:intergenic |
| TGTGATTTCTGAGTGTACTT+TGG | 0.485055 | 8.4:+1537840 | MS.gene68875:CDS |
| TAGGTCCGTGTTTGCCAGCA+CGG | 0.489653 | 8.4:+1538125 | MS.gene68875:CDS |
| GCCTCGTCAGGAAGCACAGC+AGG | 0.492073 | 8.4:+1538032 | MS.gene68875:CDS |
| GGTTCAGCCGCAATTTGTCC+GGG | 0.494328 | 8.4:+1537870 | MS.gene68875:CDS |
| TGTCCGGGCTTTGCTTCGTA+GGG | 0.499344 | 8.4:+1537885 | MS.gene68875:CDS |
| GCACGGCCTGCGTCGAAGAA+GGG | 0.502293 | 8.4:+1538142 | MS.gene68875:CDS |
| GGCTGTTGGTAAGTATGAAT+TGG | 0.502917 | 8.4:+1537921 | MS.gene68875:CDS |
| GCACCTAACGCAGCAGGCGA+AGG | 0.506022 | 8.4:-1538069 | None:intergenic |
| GCTTCTGTCCAAACACCAAA+TGG | 0.508934 | 8.4:+1537604 | MS.gene68875:CDS |
| GCTCGGGCGTTTGAGGCTGT+TGG | 0.518791 | 8.4:+1537907 | MS.gene68875:CDS |
| CACGGCCTGCGTCGAAGAAG+GGG | 0.522245 | 8.4:+1538143 | MS.gene68875:CDS |
| AGCAAAGCCCGGACAAATTG+CGG | 0.535303 | 8.4:-1537877 | None:intergenic |
| TCCTGCTGTGCTTCCTGACG+AGG | 0.536302 | 8.4:-1538033 | None:intergenic |
| TCAGGTGGTAGAAGAAAGAA+GGG | 0.549260 | 8.4:+1537556 | MS.gene68875:CDS |
| CACATGAAATGAAAGAAGAA+GGG | 0.561194 | 8.4:+1537665 | MS.gene68875:CDS |
| CAGCAGGCGAAGGCCGACTG+TGG | 0.567544 | 8.4:-1538059 | None:intergenic |
| GCAGGCCGTGCTGGCAAACA+CGG | 0.570124 | 8.4:-1538130 | None:intergenic |
| CTGTCCAAACACCAAATGGT+GGG | 0.572237 | 8.4:+1537608 | MS.gene68875:CDS |
| GCCCAAAACACATCCTGATA+GGG | 0.587986 | 8.4:+1537756 | MS.gene68875:CDS |
| CACAGCAGGATCTCCACAGT+CGG | 0.611695 | 8.4:+1538046 | MS.gene68875:CDS |
| TTAGGTGCTTCTGCTGTCCG+TGG | 0.626214 | 8.4:+1538084 | MS.gene68875:CDS |
| AGGAGAAACAACTGACCCAA+CGG | 0.628623 | 8.4:-1538176 | None:intergenic |
| AAAATTATGGGGAAATCAGG+TGG | 0.628733 | 8.4:+1537541 | None:intergenic |
| TCTGTCCAAACACCAAATGG+TGG | 0.630928 | 8.4:+1537607 | MS.gene68875:CDS |
| TGTCCAAACACCAAATGGTG+GGG | 0.637307 | 8.4:+1537609 | MS.gene68875:CDS |
| ACGGCCTGCGTCGAAGAAGG+GGG | 0.639868 | 8.4:+1538144 | MS.gene68875:CDS |
| TCCAGCAATAGGAGCCACCA+CGG | 0.645973 | 8.4:-1538101 | None:intergenic |
| GGTGCTTCTGCTGTCCGTGG+TGG | 0.654942 | 8.4:+1538087 | MS.gene68875:CDS |
| GGTGGTAGAAGAAAGAAGGG+TGG | 0.730439 | 8.4:+1537559 | MS.gene68875:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCACAGATTCATAATCAAT+AGG | - | chr8.4:1537826-1537845 | None:intergenic | 25.0% |
| !! | TTCATCAATTTTCTTGAAGA+AGG | + | chr8.4:1537642-1537661 | MS.gene68875:CDS | 25.0% |
| CACATGAAATGAAAGAAGAA+GGG | + | chr8.4:1537665-1537684 | MS.gene68875:CDS | 30.0% | |
| TTTCAGAGTAAGGATTATAC+TGG | + | chr8.4:1537697-1537716 | MS.gene68875:CDS | 30.0% | |
| GAATAGAAGGTTTCAGAGTA+AGG | + | chr8.4:1537687-1537706 | MS.gene68875:CDS | 35.0% | |
| GCACATGAAATGAAAGAAGA+AGG | + | chr8.4:1537664-1537683 | MS.gene68875:CDS | 35.0% | |
| TCAAGATGTGCAGTTGTTAT+TGG | + | chr8.4:1537948-1537967 | MS.gene68875:CDS | 35.0% | |
| TGAAAGAAGAAGGGAATAGA+AGG | + | chr8.4:1537674-1537693 | MS.gene68875:CDS | 35.0% | |
| TGTGATTTCTGAGTGTACTT+TGG | + | chr8.4:1537840-1537859 | MS.gene68875:CDS | 35.0% | |
| ! | ATCCAAAGCATCCTTATGAT+TGG | - | chr8.4:1537983-1538002 | None:intergenic | 35.0% |
| ! | TCCAAAGCATCCTTATGATT+GGG | - | chr8.4:1537982-1538001 | None:intergenic | 35.0% |
| ATCAGGTGGTAGAAGAAAGA+AGG | + | chr8.4:1537555-1537574 | MS.gene68875:CDS | 40.0% | |
| GGATATTGCTCAGAGATTGA+GGG | + | chr8.4:1537999-1538018 | MS.gene68875:CDS | 40.0% | |
| TCAGGTGGTAGAAGAAAGAA+GGG | + | chr8.4:1537556-1537575 | MS.gene68875:CDS | 40.0% | |
| TCCCAATCATAAGGATGCTT+TGG | + | chr8.4:1537978-1537997 | MS.gene68875:CDS | 40.0% | |
| TGGATATTGCTCAGAGATTG+AGG | + | chr8.4:1537998-1538017 | MS.gene68875:CDS | 40.0% | |
| ! | GGCTGTTGGTAAGTATGAAT+TGG | + | chr8.4:1537921-1537940 | MS.gene68875:CDS | 40.0% |
| !!! | GGCTGTTTTTCACAGCAATA+GGG | + | chr8.4:1537777-1537796 | MS.gene68875:CDS | 40.0% |
| AGGAGAAACAACTGACCCAA+CGG | - | chr8.4:1538179-1538198 | None:intergenic | 45.0% | |
| CTGTCCAAACACCAAATGGT+GGG | + | chr8.4:1537608-1537627 | MS.gene68875:CDS | 45.0% | |
| CTGTGAAAAACAGCCCTATC+AGG | - | chr8.4:1537772-1537791 | None:intergenic | 45.0% | |
| GCCCAAAACACATCCTGATA+GGG | + | chr8.4:1537756-1537775 | MS.gene68875:CDS | 45.0% | |
| GCTTCTGTCCAAACACCAAA+TGG | + | chr8.4:1537604-1537623 | MS.gene68875:CDS | 45.0% | |
| GGCTTCTGATCCCAATCATA+AGG | + | chr8.4:1537969-1537988 | MS.gene68875:CDS | 45.0% | |
| TCCAATTCAACCCCACCATT+TGG | - | chr8.4:1537622-1537641 | None:intergenic | 45.0% | |
| TCTGTCCAAACACCAAATGG+TGG | + | chr8.4:1537607-1537626 | MS.gene68875:CDS | 45.0% | |
| TGTCCAAACACCAAATGGTG+GGG | + | chr8.4:1537609-1537628 | MS.gene68875:CDS | 45.0% | |
| ! | ACCAAATGGTGGGGTTGAAT+TGG | + | chr8.4:1537618-1537637 | MS.gene68875:CDS | 45.0% |
| ! | AGCCCTATCAGGATGTGTTT+TGG | - | chr8.4:1537761-1537780 | None:intergenic | 45.0% |
| ! | GCCCTATCAGGATGTGTTTT+GGG | - | chr8.4:1537760-1537779 | None:intergenic | 45.0% |
| !! | TGAGTGTACTTTGGCTCTTC+AGG | + | chr8.4:1537849-1537868 | MS.gene68875:CDS | 45.0% |
| !!! | GGGCTGTTTTTCACAGCAAT+AGG | + | chr8.4:1537776-1537795 | MS.gene68875:CDS | 45.0% |
| AGAGATTGAGGGCTGCGTTT+GGG | + | chr8.4:1538010-1538029 | MS.gene68875:CDS | 50.0% | |
| AGCAAAGCCCGGACAAATTG+CGG | - | chr8.4:1537880-1537899 | None:intergenic | 50.0% | |
| AGGTTCAGCCGCAATTTGTC+CGG | + | chr8.4:1537869-1537888 | MS.gene68875:CDS | 50.0% | |
| CACGGACCTAATCCAGCAAT+AGG | - | chr8.4:1538115-1538134 | None:intergenic | 50.0% | |
| CGCCCAAAACACATCCTGAT+AGG | + | chr8.4:1537755-1537774 | MS.gene68875:CDS | 50.0% | |
| GGTGGTAGAAGAAAGAAGGG+TGG | + | chr8.4:1537559-1537578 | MS.gene68875:CDS | 50.0% | |
| GTGGCTCCTATTGCTGGATT+AGG | + | chr8.4:1538106-1538125 | MS.gene68875:CDS | 50.0% | |
| !! | CAACCCCACCATTTGGTGTT+TGG | - | chr8.4:1537615-1537634 | None:intergenic | 50.0% |
| AAGGGGGCAAATTCTGCCGT+TGG | + | chr8.4:1538160-1538179 | MS.gene68875:CDS | 55.0% | |
| AGGGGGCAAATTCTGCCGTT+GGG | + | chr8.4:1538161-1538180 | MS.gene68875:CDS | 55.0% | |
| CACAGCAGGATCTCCACAGT+CGG | + | chr8.4:1538046-1538065 | MS.gene68875:CDS | 55.0% | |
| CAGAGATTGAGGGCTGCGTT+TGG | + | chr8.4:1538009-1538028 | MS.gene68875:CDS | 55.0% | |
| GGTTCAGCCGCAATTTGTCC+GGG | + | chr8.4:1537870-1537889 | MS.gene68875:CDS | 55.0% | |
| TAGGTCCGTGTTTGCCAGCA+CGG | + | chr8.4:1538125-1538144 | MS.gene68875:CDS | 55.0% | |
| TCCAGCAATAGGAGCCACCA+CGG | - | chr8.4:1538104-1538123 | None:intergenic | 55.0% | |
| TGTCCGGGCTTTGCTTCGTA+GGG | + | chr8.4:1537885-1537904 | MS.gene68875:CDS | 55.0% | |
| TTAGGTGCTTCTGCTGTCCG+TGG | + | chr8.4:1538084-1538103 | MS.gene68875:CDS | 55.0% | |
| TTGTCCGGGCTTTGCTTCGT+AGG | + | chr8.4:1537884-1537903 | MS.gene68875:CDS | 55.0% | |
| GAGCCCTACGAAGCAAAGCC+CGG | - | chr8.4:1537891-1537910 | None:intergenic | 60.0% | |
| GGCTTTGCTTCGTAGGGCTC+GGG | + | chr8.4:1537891-1537910 | MS.gene68875:CDS | 60.0% | |
| GGGCTTTGCTTCGTAGGGCT+CGG | + | chr8.4:1537890-1537909 | MS.gene68875:CDS | 60.0% | |
| TCCGTGGTGGCTCCTATTGC+TGG | + | chr8.4:1538100-1538119 | MS.gene68875:CDS | 60.0% | |
| TCCTGCTGTGCTTCCTGACG+AGG | - | chr8.4:1538036-1538055 | None:intergenic | 60.0% | |
| TTTGCCCCCTTCTTCGACGC+AGG | - | chr8.4:1538151-1538170 | None:intergenic | 60.0% | |
| !! | GCAGAAGCACCTAACGCAGC+AGG | - | chr8.4:1538078-1538097 | None:intergenic | 60.0% |
| ACGGCCTGCGTCGAAGAAGG+GGG | + | chr8.4:1538144-1538163 | MS.gene68875:CDS | 65.0% | |
| AGCACGGCCTGCGTCGAAGA+AGG | + | chr8.4:1538141-1538160 | MS.gene68875:CDS | 65.0% | |
| CACGGCCTGCGTCGAAGAAG+GGG | + | chr8.4:1538143-1538162 | MS.gene68875:CDS | 65.0% | |
| GCACCTAACGCAGCAGGCGA+AGG | - | chr8.4:1538072-1538091 | None:intergenic | 65.0% | |
| GCACGGCCTGCGTCGAAGAA+GGG | + | chr8.4:1538142-1538161 | MS.gene68875:CDS | 65.0% | |
| GGTGCTTCTGCTGTCCGTGG+TGG | + | chr8.4:1538087-1538106 | MS.gene68875:CDS | 65.0% | |
| TCGTAGGGCTCGGGCGTTTG+AGG | + | chr8.4:1537900-1537919 | MS.gene68875:CDS | 65.0% | |
| TTCTTCGACGCAGGCCGTGC+TGG | - | chr8.4:1538142-1538161 | None:intergenic | 65.0% | |
| ! | GCAGGCCGTGCTGGCAAACA+CGG | - | chr8.4:1538133-1538152 | None:intergenic | 65.0% |
| ! | GCCTCGTCAGGAAGCACAGC+AGG | + | chr8.4:1538032-1538051 | MS.gene68875:CDS | 65.0% |
| ! | GCTCGGGCGTTTGAGGCTGT+TGG | + | chr8.4:1537907-1537926 | MS.gene68875:CDS | 65.0% |
| CAGCAGGCGAAGGCCGACTG+TGG | - | chr8.4:1538062-1538081 | None:intergenic | 70.0% | |
| CGGCCTTCGCCTGCTGCGTT+AGG | + | chr8.4:1538066-1538085 | MS.gene68875:CDS | 70.0% | |
| GGCTGCGTTTGGGCCTCGTC+AGG | + | chr8.4:1538020-1538039 | MS.gene68875:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1537547 | 1538200 | 1537547 | ID=MS.gene68875 |
| chr8.4 | mRNA | 1537547 | 1538200 | 1537547 | ID=MS.gene68875.t1;Parent=MS.gene68875 |
| chr8.4 | exon | 1537547 | 1538200 | 1537547 | ID=MS.gene68875.t1.exon1;Parent=MS.gene68875.t1 |
| chr8.4 | CDS | 1537547 | 1538200 | 1537547 | ID=cds.MS.gene68875.t1;Parent=MS.gene68875.t1 |
| Gene Sequence |
| Protein sequence |
