AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69122

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69122.t1 MTR_3g111600 98.221 281 5 0 62 342 1 281 0.0 573
MS.gene69122.t1 MTR_1g021855 79.268 328 54 2 29 342 40 367 0.0 539
MS.gene69122.t1 MTR_8g078240 71.827 323 82 2 28 341 22 344 1.63e-173 485
MS.gene69122.t1 MTR_5g019220 69.322 339 81 3 27 342 29 367 2.10e-172 483
MS.gene69122.t1 MTR_3g092310 64.026 303 104 3 35 335 34 333 3.11e-149 424
MS.gene69122.t1 MTR_5g036580 59.295 312 116 2 35 335 49 360 6.91e-139 399
MS.gene69122.t1 MTR_7g094230 60.465 301 112 2 35 335 51 344 2.29e-138 397
MS.gene69122.t1 MTR_4g118030 59.091 308 121 3 34 340 41 344 3.60e-137 393
MS.gene69122.t1 MTR_7g109210 57.402 331 126 4 24 342 32 359 3.64e-136 391
MS.gene69122.t1 MTR_1g089820 61.667 300 108 2 34 333 53 345 5.47e-135 388
MS.gene69122.t1 MTR_6g008900 57.508 313 119 4 35 333 47 359 9.76e-133 383
MS.gene69122.t1 MTR_4g071620 57.508 313 119 4 35 333 47 359 9.76e-133 383
MS.gene69122.t1 MTR_2g461670 34.375 192 115 6 141 331 395 576 5.62e-24 103
MS.gene69122.t1 MTR_4g109890 34.031 191 117 5 141 331 340 521 3.25e-22 97.8
MS.gene69122.t1 MTR_2g082650 30.846 201 117 9 141 331 209 397 4.94e-20 90.5
MS.gene69122.t1 MTR_2g082650 30.846 201 117 9 141 331 338 526 1.14e-19 90.1
MS.gene69122.t1 MTR_7g012370 30.387 181 113 7 141 314 334 508 3.31e-19 89.0
MS.gene69122.t1 MTR_3g107930 28.283 198 133 5 141 338 469 657 3.83e-19 89.0
MS.gene69122.t1 MTR_3g107930 28.283 198 133 5 141 338 392 580 3.83e-19 89.0
MS.gene69122.t1 MTR_2g015550 31.522 184 119 5 141 324 339 515 5.62e-19 88.2
MS.gene69122.t1 MTR_4g133570 30.303 198 122 8 141 331 261 449 6.78e-19 87.8
MS.gene69122.t1 MTR_7g055600 27.778 198 134 5 141 338 238 426 4.12e-18 85.1
MS.gene69122.t1 MTR_7g057530 27.778 198 134 5 141 338 238 426 4.12e-18 85.1
MS.gene69122.t1 MTR_2g027740 26.937 271 157 9 49 316 408 640 4.27e-18 85.9
MS.gene69122.t1 MTR_8g092000 29.050 179 115 5 141 316 384 553 7.44e-18 85.1
MS.gene69122.t1 MTR_7g075840 27.083 192 134 4 141 332 468 653 1.16e-17 84.3
MS.gene69122.t1 MTR_8g033360 30.345 145 98 3 141 285 437 578 1.36e-16 81.3
MS.gene69122.t1 MTR_3g452360 26.699 206 122 8 141 331 175 366 3.71e-15 76.3
MS.gene69122.t1 MTR_6g016380 27.225 191 130 5 141 331 359 540 4.62e-15 76.6
MS.gene69122.t1 MTR_3g452360 26.699 206 122 8 141 331 324 515 4.80e-15 76.3
MS.gene69122.t1 MTR_7g096160 27.568 185 125 6 139 320 453 631 1.14e-14 75.5
MS.gene69122.t1 MTR_6g013840 28.426 197 130 5 141 331 329 520 5.12e-13 70.1
MS.gene69122.t1 MTR_2g006790 24.275 276 147 8 50 324 277 491 8.29e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69122.t1 AT3G50760 71.656 314 81 3 35 340 25 338 1.42e-169 475
MS.gene69122.t1 AT1G19300 72.673 333 76 2 25 342 19 351 2.15e-169 475
MS.gene69122.t1 AT4G02130 59.347 337 124 5 11 335 8 343 7.43e-144 410
MS.gene69122.t1 AT4G02130 59.347 337 124 5 11 335 8 343 7.43e-144 410
MS.gene69122.t1 AT4G02130 59.347 337 124 5 11 335 8 343 7.43e-144 410
MS.gene69122.t1 AT1G70090 58.786 313 117 2 35 335 51 363 4.91e-139 400
MS.gene69122.t1 AT1G70090 58.786 313 117 2 35 335 51 363 4.91e-139 400
MS.gene69122.t1 AT3G28340 59.615 312 118 3 37 340 44 355 7.77e-139 398
MS.gene69122.t1 AT3G62660 64.026 303 102 3 35 333 56 355 1.21e-138 398
MS.gene69122.t1 AT1G24170 58.675 317 115 2 35 335 50 366 1.83e-138 399
MS.gene69122.t1 AT3G06260 58.882 304 120 3 34 336 45 344 6.98e-138 395
MS.gene69122.t1 AT1G02720 61.111 306 113 3 35 335 54 358 3.77e-137 394
MS.gene69122.t1 AT1G02720 61.111 306 113 3 35 335 54 358 3.77e-137 394
MS.gene69122.t1 AT1G13250 59.271 329 123 5 24 342 18 345 1.54e-135 389
MS.gene69122.t1 AT1G18580 33.152 184 117 4 141 324 342 519 2.16e-22 98.2
MS.gene69122.t1 AT5G54690 30.846 201 117 9 141 331 331 519 1.23e-20 93.2
MS.gene69122.t1 AT5G47780 31.148 183 114 5 141 320 420 593 2.42e-20 92.4
MS.gene69122.t1 AT3G61130 29.688 192 129 4 141 332 477 662 3.00e-20 92.4
MS.gene69122.t1 AT3G58790 32.500 200 116 9 141 331 204 393 3.92e-20 90.9
MS.gene69122.t1 AT3G58790 32.500 200 116 9 141 331 336 525 4.42e-20 91.7
MS.gene69122.t1 AT3G25140 30.769 195 125 5 141 333 363 549 6.84e-20 90.9
MS.gene69122.t1 AT3G01040 27.363 201 127 7 141 331 296 487 6.01e-19 88.2
MS.gene69122.t1 AT3G01040 26.866 201 128 7 141 331 329 520 7.01e-19 87.8
MS.gene69122.t1 AT3G01040 26.866 201 128 7 141 331 329 520 7.01e-19 87.8
MS.gene69122.t1 AT4G38270 29.167 192 130 4 141 332 480 665 1.22e-18 87.4
MS.gene69122.t1 AT4G38270 29.167 192 130 4 141 332 484 669 1.28e-18 87.4
MS.gene69122.t1 AT5G15470 26.368 201 129 7 141 331 329 520 6.48e-18 85.1
MS.gene69122.t1 AT2G30575 31.638 177 112 7 141 314 411 581 1.83e-15 77.8
MS.gene69122.t1 AT1G06780 29.545 176 117 4 141 314 403 573 5.20e-15 76.3
MS.gene69122.t1 AT1G06780 29.545 176 117 4 141 314 390 560 7.46e-15 75.9
MS.gene69122.t1 AT2G46480 23.611 288 184 9 54 340 295 547 7.98e-15 75.9
MS.gene69122.t1 AT2G46480 23.611 288 184 9 54 340 282 534 8.13e-15 75.9
MS.gene69122.t1 AT2G20810 31.818 198 125 6 141 338 342 529 2.90e-14 73.9
MS.gene69122.t1 AT3G02350 28.272 191 128 5 141 331 365 546 5.92e-13 70.1
MS.gene69122.t1 AT2G46480 22.222 288 163 11 54 340 282 509 7.31e-11 63.5
MS.gene69122.t1 AT2G46480 22.222 288 163 11 54 340 295 522 9.30e-11 63.2

Find 87 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGCATTACAATATTC+AGG 0.250650 3.4:+96439884 None:intergenic
TTTGGGGAATTGTAGAATTC+AGG 0.255717 3.4:+96440334 None:intergenic
CAGGGGCTTCTTTGAATAGA+TGG 0.261762 3.4:+96440353 None:intergenic
TGCTAGTAGGCCTTGTCCTT+TGG 0.293740 3.4:-96439498 MS.gene69122:CDS
TTGTCCTTTGGATACACTTT+GGG 0.294904 3.4:-96439486 MS.gene69122:CDS
GGTCAAGAATCAAAGGAAAA+TGG 0.325554 3.4:+96439440 None:intergenic
GAGGATAAGGATCTATGAAT+TGG 0.326613 3.4:-96439696 MS.gene69122:CDS
TCGGTGATGAAAGGGCATTT+TGG 0.348994 3.4:+96440316 None:intergenic
TGGAGTTTGTAATAGATCAT+AGG 0.349864 3.4:+96439460 None:intergenic
ACGGAAAGTGGTAAGAGATT+TGG 0.363144 3.4:+96440004 None:intergenic
AAGATAAACAACGCGGTTAA+CGG 0.381313 3.4:+96439985 None:intergenic
GTGAATAGAAATGCTGGTTT+TGG 0.387812 3.4:+96440427 None:intergenic
ACGGTAACAAGAAGAATAAT+AGG 0.398687 3.4:+96440395 None:intergenic
AGGTAAGCCTTGGGTTAGAT+TGG 0.401851 3.4:-96439522 MS.gene69122:CDS
GGGTGTGATGGTAATTGATT+TGG 0.412267 3.4:-96439777 MS.gene69122:CDS
CTTGTCCTTTGGATACACTT+TGG 0.415722 3.4:-96439487 MS.gene69122:CDS
ATATTGCTCCGGTGGATCAT+AGG 0.416962 3.4:-96439637 MS.gene69122:CDS
GGGTTAGATTGGATGCTAGT+AGG 0.429415 3.4:-96439511 MS.gene69122:CDS
TATGATTGCGGCGCGTAGAT+TGG 0.429472 3.4:+96440150 None:intergenic
GTCCTGTGAGTTTATTGCAT+TGG 0.436349 3.4:-96439553 MS.gene69122:CDS
AGGTGTAGAGATGGAATTTG+AGG 0.450425 3.4:+96440113 None:intergenic
ATCCACCGGAGCAATATTCC+CGG 0.454348 3.4:+96439643 None:intergenic
AGAGATGGAATTTGAGGTAG+GGG 0.460127 3.4:+96440119 None:intergenic
TGGAGTTGCAGAAGAGGATA+AGG 0.463858 3.4:-96439709 MS.gene69122:CDS
TTGGGGAATTGTAGAATTCA+GGG 0.471079 3.4:+96440335 None:intergenic
TGCAATAAACTCACAGGACC+GGG 0.478583 3.4:+96439557 None:intergenic
GCGTAGATTGGACGCGTTTG+AGG 0.479876 3.4:+96440162 None:intergenic
GAATTTGAGGTAGGGGAAGG+AGG 0.485363 3.4:+96440126 None:intergenic
ATGGAATTTGAGGTAGGGGA+AGG 0.490148 3.4:+96440123 None:intergenic
AGGATAAGGATCTATGAATT+GGG 0.498741 3.4:-96439695 MS.gene69122:CDS
TTTGTGGACATGATGAATGT+TGG 0.500526 3.4:+96440209 None:intergenic
GGATTATACTGCAAAGATTG+AGG 0.501023 3.4:-96439738 MS.gene69122:CDS
GGAGTGGGAAAGGTAAGCCT+TGG 0.501618 3.4:-96439532 MS.gene69122:CDS
GTAGAGATGGAATTTGAGGT+AGG 0.502782 3.4:+96440117 None:intergenic
GGAGTTTGTAATAGATCATA+GGG 0.510024 3.4:+96439461 None:intergenic
AGGGGCTTCTTTGAATAGAT+GGG 0.510030 3.4:+96440354 None:intergenic
ATTGGATGGAGTTGCAGAAG+AGG 0.511006 3.4:-96439715 MS.gene69122:CDS
GAGTGGGAAAGGTAAGCCTT+GGG 0.511259 3.4:-96439531 MS.gene69122:CDS
AGAACTGTGAATAGAAATGC+TGG 0.520009 3.4:+96440421 None:intergenic
TTGAAGTGTCGGTGATGAAA+GGG 0.522102 3.4:+96440308 None:intergenic
TTTGATGACACCACTGTCAC+CGG 0.522736 3.4:-96440091 MS.gene69122:CDS
TTATTGCATTGGAGTGGGAA+AGG 0.522940 3.4:-96439542 MS.gene69122:CDS
TGCAAAGATTGAGGATTGGA+TGG 0.525594 3.4:-96439729 MS.gene69122:CDS
TATTGATAAGATTGCTGCCA+TGG 0.527682 3.4:+96440234 None:intergenic
TTCTTTGAATAGATGGGTGA+TGG 0.529911 3.4:+96440360 None:intergenic
GATTTGGAACGATGGAGACA+AGG 0.535423 3.4:-96439761 MS.gene69122:CDS
GAAGATTGGTCAAGAATCAA+AGG 0.537506 3.4:+96439433 None:intergenic
ACAATCGAGAGCTGAACGAA+TGG 0.541430 3.4:+96440054 None:intergenic
ATGCAATAAACTCACAGGAC+CGG 0.546673 3.4:+96439556 None:intergenic
ACAACGCGGTTAACGGAAAG+TGG 0.555082 3.4:+96439992 None:intergenic
AACATACATCCGAGGATCCA+TGG 0.555402 3.4:-96440251 MS.gene69122:CDS
TAGAGATGGAATTTGAGGTA+GGG 0.559827 3.4:+96440118 None:intergenic
TGCCGGGAATATTGCTCCGG+TGG 0.560558 3.4:-96439645 MS.gene69122:CDS
AGATTGCTGCCATGGATCCT+CGG 0.563959 3.4:+96440242 None:intergenic
AAATTAGCAGAAACACCGTT+AGG 0.570033 3.4:-96439929 MS.gene69122:CDS
ATTTGGAACGATGGAGACAA+GGG 0.575264 3.4:-96439760 MS.gene69122:CDS
AGGTGGAATCAACATGGACT+TGG 0.575288 3.4:-96439617 MS.gene69122:CDS
GGTGACAGTGGTGTCATCAA+AGG 0.575295 3.4:+96440093 None:intergenic
ATACTGCAAAGATTGAGGAT+TGG 0.577186 3.4:-96439733 MS.gene69122:CDS
TTTGAAGTGTCGGTGATGAA+AGG 0.577391 3.4:+96440307 None:intergenic
AATGGAGGTTGAGATGAGTC+CGG 0.579533 3.4:+96440072 None:intergenic
TGTCATCAAAGGTGTAGAGA+TGG 0.581166 3.4:+96440104 None:intergenic
CTCCAATGCAATAAACTCAC+AGG 0.589994 3.4:+96439551 None:intergenic
CTTTGTAGAAATCTTCATCC+CGG 0.594004 3.4:-96439575 MS.gene69122:CDS
TGGAATCAACATGGACTTGG+TGG 0.600755 3.4:-96439614 MS.gene69122:CDS
TGAGTTTATTGCATTGGAGT+GGG 0.602915 3.4:-96439547 MS.gene69122:CDS
GTGAGTTTATTGCATTGGAG+TGG 0.603412 3.4:-96439548 MS.gene69122:CDS
TGATTCCACCTATGATCCAC+CGG 0.603497 3.4:+96439629 None:intergenic
TAGCTACGAGCGTAGTTGAG+AGG 0.614608 3.4:+96440031 None:intergenic
ATCGAGAGCTGAACGAATGG+AGG 0.618388 3.4:+96440057 None:intergenic
TTGCTCCGGTGGATCATAGG+TGG 0.620003 3.4:-96439634 MS.gene69122:CDS
TGGGGAATTGTAGAATTCAG+GGG 0.620014 3.4:+96440336 None:intergenic
CAAAGTGTATCCAAAGGACA+AGG 0.621380 3.4:+96439488 None:intergenic
GCAAAAGTGAGAGACAAAGA+AGG 0.625193 3.4:+96439827 None:intergenic
TGGTAATTGATTTGGAACGA+TGG 0.637912 3.4:-96439769 MS.gene69122:CDS
GGGGAAGGAGGTTATGATTG+CGG 0.641133 3.4:+96440138 None:intergenic
GATCATAGGTGGAATCAACA+TGG 0.645694 3.4:-96439623 MS.gene69122:CDS
CTAGCATCCAATCTAACCCA+AGG 0.648795 3.4:+96439515 None:intergenic
GAAGGATTAGACCAAAACGA+TGG 0.667150 3.4:+96439845 None:intergenic
TTTGGAACGATGGAGACAAG+GGG 0.670581 3.4:-96439759 MS.gene69122:CDS
TGAGATGAGTCCGGTGACAG+TGG 0.670602 3.4:+96440081 None:intergenic
CGTTTGAGGAACAAACGAAG+TGG 0.674425 3.4:+96440176 None:intergenic
CTCGACACAACATACATCCG+AGG 0.680109 3.4:-96440259 MS.gene69122:CDS
GGTGCCCAAAGTGTATCCAA+AGG 0.687311 3.4:+96439482 None:intergenic
ACACCCGTGTTAAAATAACA+CGG 0.716989 3.4:+96439794 None:intergenic
CTGAATCAAGATAAACAACG+CGG 0.749549 3.4:+96439978 None:intergenic
GTGATGGTAGATGATAAACA+CGG 0.805266 3.4:+96440376 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTGCATTACAATATTC+AGG + chr3.4:96440009-96440028 None:intergenic 20.0%
ACGGTAACAAGAAGAATAAT+AGG + chr3.4:96439498-96439517 None:intergenic 30.0%
AGGATAAGGATCTATGAATT+GGG - chr3.4:96440195-96440214 MS.gene69122:CDS 30.0%
GGAGTTTGTAATAGATCATA+GGG + chr3.4:96440432-96440451 None:intergenic 30.0%
TGGAGTTTGTAATAGATCAT+AGG + chr3.4:96440433-96440452 None:intergenic 30.0%
! AAAACAGAGTTTTCTCCTAA+CGG + chr3.4:96439979-96439998 None:intergenic 30.0%
! AAGTGGAAGAATATGTTTTG+TGG + chr3.4:96439700-96439719 None:intergenic 30.0%
!!! AAAGCCGTGTTATTTTAACA+CGG - chr3.4:96440092-96440111 MS.gene69122:CDS 30.0%
!!! AACTGTTGATTTTGAAGTGT+CGG + chr3.4:96439596-96439615 None:intergenic 30.0%
!!! CTTATTTTACTCCATCGTTT+TGG - chr3.4:96440034-96440053 MS.gene69122:CDS 30.0%
AAATTAGCAGAAACACCGTT+AGG - chr3.4:96439961-96439980 MS.gene69122:CDS 35.0%
AAGATAAACAACGCGGTTAA+CGG + chr3.4:96439908-96439927 None:intergenic 35.0%
ACACCCGTGTTAAAATAACA+CGG + chr3.4:96440099-96440118 None:intergenic 35.0%
AGAACTGTGAATAGAAATGC+TGG + chr3.4:96439472-96439491 None:intergenic 35.0%
ATACTGCAAAGATTGAGGAT+TGG - chr3.4:96440157-96440176 MS.gene69122:CDS 35.0%
CTGAATCAAGATAAACAACG+CGG + chr3.4:96439915-96439934 None:intergenic 35.0%
CTTTGTAGAAATCTTCATCC+CGG - chr3.4:96440315-96440334 MS.gene69122:CDS 35.0%
GAGGATAAGGATCTATGAAT+TGG - chr3.4:96440194-96440213 MS.gene69122:CDS 35.0%
GGATTATACTGCAAAGATTG+AGG - chr3.4:96440152-96440171 MS.gene69122:CDS 35.0%
GTGATGGTAGATGATAAACA+CGG + chr3.4:96439517-96439536 None:intergenic 35.0%
TATTGATAAGATTGCTGCCA+TGG + chr3.4:96439659-96439678 None:intergenic 35.0%
TGAGTTTATTGCATTGGAGT+GGG - chr3.4:96440343-96440362 MS.gene69122:CDS 35.0%
TTCTTTGAATAGATGGGTGA+TGG + chr3.4:96439533-96439552 None:intergenic 35.0%
TTGGGGAATTGTAGAATTCA+GGG + chr3.4:96439558-96439577 None:intergenic 35.0%
TTGTCCTTTGGATACACTTT+GGG - chr3.4:96440404-96440423 MS.gene69122:CDS 35.0%
TTTGGGGAATTGTAGAATTC+AGG + chr3.4:96439559-96439578 None:intergenic 35.0%
TTTGTGGACATGATGAATGT+TGG + chr3.4:96439684-96439703 None:intergenic 35.0%
! TAGAGATGGAATTTGAGGTA+GGG + chr3.4:96439775-96439794 None:intergenic 35.0%
!! TGGTAATTGATTTGGAACGA+TGG - chr3.4:96440121-96440140 MS.gene69122:CDS 35.0%
!!! AAGCCGTGTTATTTTAACAC+GGG - chr3.4:96440093-96440112 MS.gene69122:CDS 35.0%
!!! AATAGAAATGCTGGTTTTGG+TGG + chr3.4:96439463-96439482 None:intergenic 35.0%
!!! GTGAATAGAAATGCTGGTTT+TGG + chr3.4:96439466-96439485 None:intergenic 35.0%
!!! TTATTTTAACACGGGTGTGA+TGG - chr3.4:96440101-96440120 MS.gene69122:CDS 35.0%
ACGGAAAGTGGTAAGAGATT+TGG + chr3.4:96439889-96439908 None:intergenic 40.0%
AGGGGCTTCTTTGAATAGAT+GGG + chr3.4:96439539-96439558 None:intergenic 40.0%
AGGTGTAGAGATGGAATTTG+AGG + chr3.4:96439780-96439799 None:intergenic 40.0%
ATGCAATAAACTCACAGGAC+CGG + chr3.4:96440337-96440356 None:intergenic 40.0%
CAAAGTGTATCCAAAGGACA+AGG + chr3.4:96440405-96440424 None:intergenic 40.0%
CCGGCAAAAACAAGCAAAAA+CGG + chr3.4:96440231-96440250 None:intergenic 40.0%
CTCCAATGCAATAAACTCAC+AGG + chr3.4:96440342-96440361 None:intergenic 40.0%
CTTGTCCTTTGGATACACTT+TGG - chr3.4:96440403-96440422 MS.gene69122:CDS 40.0%
GAAGGATTAGACCAAAACGA+TGG + chr3.4:96440048-96440067 None:intergenic 40.0%
GATCATAGGTGGAATCAACA+TGG - chr3.4:96440267-96440286 MS.gene69122:CDS 40.0%
GCAAAAACAAGCAAAAACGG+CGG + chr3.4:96440228-96440247 None:intergenic 40.0%
GCAAAAGTGAGAGACAAAGA+AGG + chr3.4:96440066-96440085 None:intergenic 40.0%
GGGTGTGATGGTAATTGATT+TGG - chr3.4:96440113-96440132 MS.gene69122:CDS 40.0%
GTCCTGTGAGTTTATTGCAT+TGG - chr3.4:96440337-96440356 MS.gene69122:CDS 40.0%
GTGAGTTTATTGCATTGGAG+TGG - chr3.4:96440342-96440361 MS.gene69122:CDS 40.0%
TGCAAAGATTGAGGATTGGA+TGG - chr3.4:96440161-96440180 MS.gene69122:CDS 40.0%
TGGGGAATTGTAGAATTCAG+GGG + chr3.4:96439557-96439576 None:intergenic 40.0%
TTATTGCATTGGAGTGGGAA+AGG - chr3.4:96440348-96440367 MS.gene69122:CDS 40.0%
! AGAGATGGAATTTGAGGTAG+GGG + chr3.4:96439774-96439793 None:intergenic 40.0%
! ATTTGGAACGATGGAGACAA+GGG - chr3.4:96440130-96440149 MS.gene69122:CDS 40.0%
! GTAGAGATGGAATTTGAGGT+AGG + chr3.4:96439776-96439795 None:intergenic 40.0%
! TGTCATCAAAGGTGTAGAGA+TGG + chr3.4:96439789-96439808 None:intergenic 40.0%
!! TTGAAGTGTCGGTGATGAAA+GGG + chr3.4:96439585-96439604 None:intergenic 40.0%
!! TTTGAAGTGTCGGTGATGAA+AGG + chr3.4:96439586-96439605 None:intergenic 40.0%
!!! CCGTTTTTGCTTGTTTTTGC+CGG - chr3.4:96440228-96440247 MS.gene69122:CDS 40.0%
!!! CGTTTTTGCTTGTTTTTGCC+GGG - chr3.4:96440229-96440248 MS.gene69122:CDS 40.0%
!!! CTTGGTGGTGATAATTTTCG+TGG - chr3.4:96440291-96440310 MS.gene69122:CDS 40.0%
AACATACATCCGAGGATCCA+TGG - chr3.4:96439639-96439658 MS.gene69122:CDS 45.0%
AATGGAGGTTGAGATGAGTC+CGG + chr3.4:96439821-96439840 None:intergenic 45.0%
ACAATCGAGAGCTGAACGAA+TGG + chr3.4:96439839-96439858 None:intergenic 45.0%
AGGTGGAATCAACATGGACT+TGG - chr3.4:96440273-96440292 MS.gene69122:CDS 45.0%
ATATTGCTCCGGTGGATCAT+AGG - chr3.4:96440253-96440272 MS.gene69122:CDS 45.0%
ATTGGATGGAGTTGCAGAAG+AGG - chr3.4:96440175-96440194 MS.gene69122:CDS 45.0%
CAGGGGCTTCTTTGAATAGA+TGG + chr3.4:96439540-96439559 None:intergenic 45.0%
CGTTTGAGGAACAAACGAAG+TGG + chr3.4:96439717-96439736 None:intergenic 45.0%
CTAGCATCCAATCTAACCCA+AGG + chr3.4:96440378-96440397 None:intergenic 45.0%
GGGTTAGATTGGATGCTAGT+AGG - chr3.4:96440379-96440398 MS.gene69122:CDS 45.0%
TGATTCCACCTATGATCCAC+CGG + chr3.4:96440264-96440283 None:intergenic 45.0%
TGCAATAAACTCACAGGACC+GGG + chr3.4:96440336-96440355 None:intergenic 45.0%
TGGAATCAACATGGACTTGG+TGG - chr3.4:96440276-96440295 MS.gene69122:CDS 45.0%
TGGAGTTGCAGAAGAGGATA+AGG - chr3.4:96440181-96440200 MS.gene69122:CDS 45.0%
! AGGTAAGCCTTGGGTTAGAT+TGG - chr3.4:96440368-96440387 MS.gene69122:CDS 45.0%
! ATGGAATTTGAGGTAGGGGA+AGG + chr3.4:96439770-96439789 None:intergenic 45.0%
! GATTTGGAACGATGGAGACA+AGG - chr3.4:96440129-96440148 MS.gene69122:CDS 45.0%
! TTTGATGACACCACTGTCAC+CGG - chr3.4:96439799-96439818 MS.gene69122:CDS 45.0%
! TTTGGAACGATGGAGACAAG+GGG - chr3.4:96440131-96440150 MS.gene69122:CDS 45.0%
! TTTTGCCGGGAATATTGCTC+CGG - chr3.4:96440242-96440261 MS.gene69122:CDS 45.0%
!!! CGGTGATGAAAGGGCATTTT+GGG + chr3.4:96439576-96439595 None:intergenic 45.0%
!!! GGTGATGAAAGGGCATTTTG+GGG + chr3.4:96439575-96439594 None:intergenic 45.0%
!!! TCGGTGATGAAAGGGCATTT+TGG + chr3.4:96439577-96439596 None:intergenic 45.0%
ACAACGCGGTTAACGGAAAG+TGG + chr3.4:96439901-96439920 None:intergenic 50.0%
AGATTGCTGCCATGGATCCT+CGG + chr3.4:96439651-96439670 None:intergenic 50.0%
ATCCACCGGAGCAATATTCC+CGG + chr3.4:96440250-96440269 None:intergenic 50.0%
ATCGAGAGCTGAACGAATGG+AGG + chr3.4:96439836-96439855 None:intergenic 50.0%
CTCGACACAACATACATCCG+AGG - chr3.4:96439631-96439650 MS.gene69122:CDS 50.0%
GAGTGGGAAAGGTAAGCCTT+GGG - chr3.4:96440359-96440378 MS.gene69122:CDS 50.0%
GGGGAAGGAGGTTATGATTG+CGG + chr3.4:96439755-96439774 None:intergenic 50.0%
GGTGCCCAAAGTGTATCCAA+AGG + chr3.4:96440411-96440430 None:intergenic 50.0%
TAGCTACGAGCGTAGTTGAG+AGG + chr3.4:96439862-96439881 None:intergenic 50.0%
TATGATTGCGGCGCGTAGAT+TGG + chr3.4:96439743-96439762 None:intergenic 50.0%
! GAATTTGAGGTAGGGGAAGG+AGG + chr3.4:96439767-96439786 None:intergenic 50.0%
! TGCTAGTAGGCCTTGTCCTT+TGG - chr3.4:96440392-96440411 MS.gene69122:CDS 50.0%
!! GGTGACAGTGGTGTCATCAA+AGG + chr3.4:96439800-96439819 None:intergenic 50.0%
GCGTAGATTGGACGCGTTTG+AGG + chr3.4:96439731-96439750 None:intergenic 55.0%
GGAGTGGGAAAGGTAAGCCT+TGG - chr3.4:96440358-96440377 MS.gene69122:CDS 55.0%
TGAGATGAGTCCGGTGACAG+TGG + chr3.4:96439812-96439831 None:intergenic 55.0%
TTGCTCCGGTGGATCATAGG+TGG - chr3.4:96440256-96440275 MS.gene69122:CDS 55.0%
TGCCGGGAATATTGCTCCGG+TGG - chr3.4:96440245-96440264 MS.gene69122:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 96439442 96440470 96439442 ID=MS.gene69122
chr3.4 mRNA 96439442 96440470 96439442 ID=MS.gene69122.t1;Parent=MS.gene69122
chr3.4 exon 96439442 96440470 96439442 ID=MS.gene69122.t1.exon1;Parent=MS.gene69122.t1
chr3.4 CDS 96439442 96440470 96439442 ID=cds.MS.gene69122.t1;Parent=MS.gene69122.t1
Gene Sequence

>MS.gene69122

ATGCAATCTAAATCAAAACCACCAAAACCAGCATTTCTATTCACAGTTCTAATCCTATTATTCTTCTTGTTACCGTGTTTATCATCTACCATCACCCATCTATTCAAAGAAGCCCCTGAATTCTACAATTCCCCAAAATGCCCTTTCATCACCGACACTTCAAAATCAACAGTTCAAGTAGCAATGACACTCGACACAACATACATCCGAGGATCCATGGCAGCAATCTTATCAATACTCCAACATTCATCATGTCCACAAAACATATTCTTCCACTTCGTTTGTTCCTCAAACGCGTCCAATCTACGCGCCGCAATCATAACCTCCTTCCCCTACCTCAAATTCCATCTCTACACCTTTGATGACACCACTGTCACCGGACTCATCTCAACCTCCATTCGTTCAGCTCTCGATTGTCCTCTCAACTACGCTCGTAGCTACTTACCAAATCTCTTACCACTTTCCGTTAACCGCGTTGTTTATCTTGATTCAGATCTTATTCTTGTTGATGACATTGCAAAATTAGCAGAAACACCGTTAGGAGAAAACTCTGTTTTAGCAGCACCTGAATATTGTAATGCAAATTTCAGTTCTTATTTTACTCCATCGTTTTGGTCTAATCCTTCTTTGTCTCTCACTTTTGCGAATAGAAAGCCGTGTTATTTTAACACGGGTGTGATGGTAATTGATTTGGAACGATGGAGACAAGGGGATTATACTGCAAAGATTGAGGATTGGATGGAGTTGCAGAAGAGGATAAGGATCTATGAATTGGGTTCATTGCCGCCGTTTTTGCTTGTTTTTGCCGGGAATATTGCTCCGGTGGATCATAGGTGGAATCAACATGGACTTGGTGGTGATAATTTTCGTGGTCTTTGTAGAAATCTTCATCCCGGTCCTGTGAGTTTATTGCATTGGAGTGGGAAAGGTAAGCCTTGGGTTAGATTGGATGCTAGTAGGCCTTGTCCTTTGGATACACTTTGGGCACCCTATGATCTATTACAAACTCCATTTTCCTTTGATTCTTGA
Protein sequence

>MS.gene69122.t1

MQSKSKPPKPAFLFTVLILLFFLLPCLSSTITHLFKEAPEFYNSPKCPFITDTSKSTVQVAMTLDTTYIRGSMAAILSILQHSSCPQNIFFHFVCSSNASNLRAAIITSFPYLKFHLYTFDDTTVTGLISTSIRSALDCPLNYARSYLPNLLPLSVNRVVYLDSDLILVDDIAKLAETPLGENSVLAAPEYCNANFSSYFTPSFWSNPSLSLTFANRKPCYFNTGVMVIDLERWRQGDYTAKIEDWMELQKRIRIYELGSLPPFLLVFAGNIAPVDHRWNQHGLGGDNFRGLCRNLHPGPVSLLHWSGKGKPWVRLDASRPCPLDTLWAPYDLLQTPFSFDS