AlfalfaGEDB | MS.gene69677

M. sativa cultivar XinJiangDaYe / MS.gene69677

KEGG: K17609
GO: GO:0008150 GO:0009987 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF03107.19 PF13905.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69677.t1	XP_013445998.1	94	570	34	0	1	570	1	570	0.00E+00	1110.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69677.t1	O80763	62.4	569	208	3	7	570	11	578	1.1e-216	754.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69677.t1	A0A072U2K5	94.0	570	34	0	1	570	1	570	0.0e+00	1110.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052011	MS.gene69677	-0.808042	3.76E-50	-1.69E-46
MS.gene054183	MS.gene69677	0.829151	6.04E-55	-1.69E-46
MS.gene054556	MS.gene69677	0.803686	3.10E-49	-1.69E-46
MS.gene055217	MS.gene69677	0.829776	4.26E-55	-1.69E-46
MS.gene057255	MS.gene69677	0.810408	1.17E-50	-1.69E-46
MS.gene057888	MS.gene69677	0.804186	2.44E-49	-1.69E-46
MS.gene061214	MS.gene69677	0.813881	2.04E-51	-1.69E-46
MS.gene061215	MS.gene69677	0.817949	2.53E-52	-1.69E-46

Showing 1 to 8 of 8 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene026627	MS.gene69677	PPI
MS.gene026628	MS.gene69677	PPI
MS.gene33593	MS.gene69677	PPI
MS.gene59310	MS.gene69677	PPI
MS.gene63007	MS.gene69677	PPI

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69677.t1	MTR_8g064810	94.035	570	34	0	1	570	1	570	0.0	1106
MS.gene69677.t1	MTR_8g064840	86.570	484	65	0	1	484	1	484	0.0	866
MS.gene69677.t1	MTR_8g064840	35.928	334	211	3	9	340	169	501	5.77e-63	215
MS.gene69677.t1	MTR_8g064840	33.702	181	117	2	328	507	8	186	8.01e-33	132
MS.gene69677.t1	MTR_3g114530	40.256	390	215	5	175	546	40	429	8.61e-96	299
MS.gene69677.t1	MTR_3g114530	42.722	316	166	4	15	315	40	355	6.08e-82	263
MS.gene69677.t1	MTR_3g114530	45.161	155	72	4	14	156	203	356	4.08e-34	134
MS.gene69677.t1	MTR_3g109120	38.904	365	222	1	175	539	19	382	1.17e-95	297
MS.gene69677.t1	MTR_3g109120	34.954	329	209	5	9	335	13	338	1.12e-62	211

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene69677.t1	AT1G60420	62.281	570	209	3	6	570	10	578	0.0	751
MS.gene69677.t1	AT4G31240	38.211	369	227	1	172	540	17	384	6.70e-93	290
MS.gene69677.t1	AT4G31240	34.494	316	203	4	11	324	16	329	8.55e-63	212
MS.gene69677.t1	AT4G31240	38.211	369	227	1	172	540	17	384	6.70e-93	290
MS.gene69677.t1	AT4G31240	34.494	316	203	4	11	324	16	329	8.55e-63	212

Showing 1 to 5 of 5 entries

Previous1Next

Find 148 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATAGAGGCACAAA+AGG	0.441932	8.3:-37178615	MS.gene69677:CDS
AAAAGCCTCATCATCTTTAT+CGG	0.320709	8.3:+37180042	None:intergenic
AAAAGGATGACATTGCAAAG+GGG	0.748471	8.3:-37178598	MS.gene69677:CDS
AAACATTGATGCACTTGAAG+TGG	0.494137	8.3:-37178873	MS.gene69677:CDS
AAAGAAGCTCGAGGTCTGGT+TGG	0.502824	8.3:-37178680	MS.gene69677:CDS
AAAGATGGATGGGTTTGTGA+TGG	0.605439	8.3:-37178377	MS.gene69677:CDS
AACAAGCAGATTTCAGGCTT+TGG	0.367079	8.3:+37178343	None:intergenic
AAGAAGCTCGAGGTCTGGTT+GGG	0.474272	8.3:-37178679	MS.gene69677:CDS
AAGAATTAGAAAGTGTGCCT+TGG	0.535581	8.3:-37179427	MS.gene69677:CDS
AAGAGAAGCCCAAAGATGGA+TGG	0.550982	8.3:-37178388	MS.gene69677:CDS

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGAGAAGAGAAGTAA+CGG	+	chr8.3:37178475-37178494	None:intergenic	30.0%
AAAAGCCTCATCATCTTTAT+CGG	+	chr8.3:37179772-37179791	None:intergenic	30.0%
AATGGACAAAAAATTCACAC+AGG	+	chr8.3:37179392-37179411	None:intergenic	30.0%
ACAAAAAGCTGAAGGAAAAT+GGG	-	chr8.3:37180306-37180325	MS.gene69677:intron	30.0%
ATGGACAAAAAATTCACACA+GGG	+	chr8.3:37179391-37179410	None:intergenic	30.0%
ATTAAAAAGAGGGAATGATG+GGG	+	chr8.3:37180736-37180755	None:intergenic	30.0%
GACTCTTCTTCATTATCTAA+GGG	+	chr8.3:37180356-37180375	None:intergenic	30.0%
GATGAACTGTTTCATGTAAA+CGG	-	chr8.3:37179861-37179880	MS.gene69677:CDS	30.0%
GGAAAAGTTATTACTGAAGA+TGG	-	chr8.3:37179915-37179934	MS.gene69677:CDS	30.0%
GGAGAGAATAAAAGAAATAG+AGG	-	chr8.3:37181187-37181206	MS.gene69677:intron	30.0%

Showing 1 to 10 of 296 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	37178355	37181478	37178355	ID=MS.gene69677
chr8.3	mRNA	37178355	37181478	37178355	ID=MS.gene69677.t1;Parent=MS.gene69677
chr8.3	exon	37181386	37181478	37181386	ID=MS.gene69677.t1.exon1;Parent=MS.gene69677.t1
chr8.3	CDS	37181386	37181478	37181386	ID=cds.MS.gene69677.t1;Parent=MS.gene69677.t1
chr8.3	exon	37179733	37180212	37179733	ID=MS.gene69677.t1.exon2;Parent=MS.gene69677.t1
chr8.3	CDS	37179733	37180212	37179733	ID=cds.MS.gene69677.t1;Parent=MS.gene69677.t1
chr8.3	exon	37179148	37179627	37179148	ID=MS.gene69677.t1.exon3;Parent=MS.gene69677.t1
chr8.3	CDS	37179148	37179627	37179148	ID=cds.MS.gene69677.t1;Parent=MS.gene69677.t1
chr8.3	exon	37178355	37179014	37178355	ID=MS.gene69677.t1.exon4;Parent=MS.gene69677.t1
chr8.3	CDS	37178355	37179014	37178355	ID=cds.MS.gene69677.t1;Parent=MS.gene69677.t1

Gene Sequence

>MS.gene69677

ATGGCGGATTCTGTTGCTGATGTCACTCACGAAGTTCACTCTATTCTCTCTTCTCCTGATAGAGACTTTCTTCTTCGCAACACCGGCGATCAGGTACTACAACTGTCCACCGTAACTCCGTTACTTCTCTTCTCCTTTTTTGTTGTGTTTTATGAAATTATTAAGAGACTAATGTGATCAAATATTTTTTAATTTGATGAGTCATAATTTTAGTAATTTCTTGATTCAAACAAAACTATACAATTTTTGGACTAAAGTAAATGATTCTCTCTTGTTTATACAAAATTTATTCTGTTTCAGTGATCAGATTGTGTTCCTTGTTGCATATATGCAATTAAGGGCTAATCTATGTAGTACCGACACTTCTGATAGAATACGTGGTGGATTTAGTAGTGGCGATTCATTTTGTTTGAGTGAAATTATTACATTGACCAGAGTTGACTAAGGCTTTGTTTGGGAGTTTGGAGGGGAGGGGAGGGGAGGATTTTGGAAAAAGGAAGGAACAAGTGGAAGAAATAGAAGACATTGGGAGGAGAGGGCTTTGGAGGTTAATTTTTTACTCATAATAAAAAATCCCCCTCATTTCAAATCCAATTTATATTGTTATTATATTCTTAAAATTAAAAGTATATTAATCATAAGTATTAGTTTATCATTCTCTAAAAAACTGTTCTTTCAAAAAAGTGAATTCGGTGGCGGATCTTGCCGAAAATATTGGGGGGTGCGGTAAATATGAACTAAATATTATAATTGAAATTCATAAAAGTTATATACAATTTCATCCAAAAAAATATCACCACAATAGCTCAAACACGAGACTAAAGCTCCAAATATATTATATACCAACATGAGAAGTGAGAATCGCGTTTTGATACATGAGGATGGAGAGGAGAGGGGGTACCGAGAGAGAGACTCAGACAAAACAAGTGTGAACTAAAAGTGTCTTAGGGGTACTATAGTAGTTTACTATATACAAAAAAAAAAAAAATATTAGGGGGTGCCACGGCACCTGGGGGTCTCAATAGAGATCCGCCCCTGTGTGAATTTTTTGTCCATTTTTCTATATATTTCCAACCCCCCAAAGCCCTCCCCTCCCTTCCCCTCCAAACTCCCAAACAAAGTCTAAGTTTTCATGTGGTTTATTCTAGTGTTTTTCTTACTTGACACTGTGGTTTATGACAGTTATTTGAAGTGGTAGTTTTATTTGTACTTGTACCGATGGAATATTGTGTTGTGGTGCTATTTCTCATATTTTGAAATTTACAGGTTAAAATTGATAGCTTGAAGGGAAAGAAACTTGGTTTCTATTTTTCAGCATCATGGTGTGGTCCGTGTCGAGGATTCACTCCAACGTTGGTGGAGGTCTACGATGAACTCTCTCCAAACGGTGACTTTGAGGTTGTTTTTGTCTCAGCCGATAAAGATGATGAGGCTTTTAAGAGCTACTTTTCCAAGATGCCATGGCTGGCTATCCCATTTTCTGATTCAGAGACACGCAGTCGCCTTGATGAACTGTTTCATGTAAACGGAATTCCTCATCTTGCATTGCTTGATGAAGCTGGAAAAGTTATTACTGAAGATGGAGTTCACATTATCCGTGTTTATGGAGCTGAAGGATACCCTTTCACATCAGAAAGGGTTCAAGAGTTGAAAGATCAAGAAGAGGAAGCTAAGAGGAACCAGTCCTTGAGATCGGTATTGGCCTCTCGTTCCCGTGACTTTGTGATATCATCCGATGGAAATGAAGTAAGCTAGTAACTTAACTCAGTATGATATAGTAGGTTCCTTTTGTTATTATCTGGTTGTTTGGTTCATTTACCAATCTCACTTTTCCTTTCATGTGCACAACAGATACCTATCTCTGAGCTTGAGGGAAAGACAGTTGGTTTGCACTTCTTTACGACTAAATACAAACCATGCACTCTATTTAATCAAAAGCTTAAGGAGGTTTACAAAAAGCTGAAGGAAAATGGGGAGAACTTTGAGATCGTCTTTATACCCTTAGATAATGAAGAAGAGTCATTCAAGAAAGAATTAGAAAGTGTGCCTTGGTTATCCTTGCCTCTCAAGGACAAAACCTGTGCGAAACTAATTCAATACTTTAAGCTATCAGATCTCCCTACCTTGGTTGTTATTGGGCCAGATGGGAAAACTCTACATCCTAATGCCGCTGAGGCCATTGAGGATCATGGGGTTGATGCGTATCCATTCACTCCTGAAAAGTTTTCTGAACTCGATGAAATAGCAAAGGCCAAGGAGGCATCTCAAACACTTGAGTCAGTTTTGGTGTCTGGCGATCAAGATTTTATCATTGACAAAGATGCGAAGAAGGTAATATATCTTGCAACATAAATTTACTGGATTTTGTTGAGTAATTCCCCCATCATTCCCTCTTTTTAATTTGTTATTAATAGTAACCAAAAAAAAATTGTTATTAATAAGTTAGCATTTATCTCCATTTCAGATTCCGGTGTCAGAGTTAGAGGGGAAAACTGTCCTCCTCTACTTCTCAGCCCACTGGTGTCCCCCATGCCGTGCTTTTCTTCCAAAACTCATTGAAGCATACCATAAGATTAAGGCACAAAACATTGATGCACTTGAAGTGGTTTTCATCTCAAGTGACAGGGATCAAGAATCCTTTAATGAATTCTTTGCGGGAATGCCATGGCTGGCACTTCCCTTTGGTGACACAAGAAAAGAATTCTTGAGTCGCAAATTCAAGGTATCTGGCATCCCCAAGCTCGTGGCAATTGGGCCAAGTGGCCAGACTGTCACGAAAGAAGCTCGAGGTCTGGTTGGGCTTTATGGGGCAGATGCTTATCCTTTCACTGAGGAGAGAATAAAAGAAATAGAGGCACAAAAGGATGACATTGCAAAGGGGTGGCCTGAGAAGGTGACGCATGAAACACATGAGCACGAGCTTGTATTGTCACGTCGCAATGTTTATTGCTGCGATGGTTGTGAGGATGAGGGAGATAATTGGTCATACTACTGTAAAGAGTGTGACTTTGATCTCCATCCAAATTGTGCGCTGGGAGACAAAGGAAGCATAAATGGTGCCAAGGAAGAAGAGAAGCCCAAAGATGGATGGGTTTGTGATGGAGATGTCTGCACCAAAGCCTGA

Protein sequence

>MS.gene69677.t1

MADSVADVTHEVHSILSSPDRDFLLRNTGDQVKIDSLKGKKLGFYFSASWCGPCRGFTPTLVEVYDELSPNGDFEVVFVSADKDDEAFKSYFSKMPWLAIPFSDSETRSRLDELFHVNGIPHLALLDEAGKVITEDGVHIIRVYGAEGYPFTSERVQELKDQEEEAKRNQSLRSVLASRSRDFVISSDGNEIPISELEGKTVGLHFFTTKYKPCTLFNQKLKEVYKKLKENGENFEIVFIPLDNEEESFKKELESVPWLSLPLKDKTCAKLIQYFKLSDLPTLVVIGPDGKTLHPNAAEAIEDHGVDAYPFTPEKFSELDEIAKAKEASQTLESVLVSGDQDFIIDKDAKKIPVSELEGKTVLLYFSAHWCPPCRAFLPKLIEAYHKIKAQNIDALEVVFISSDRDQESFNEFFAGMPWLALPFGDTRKEFLSRKFKVSGIPKLVAIGPSGQTVTKEARGLVGLYGADAYPFTEERIKEIEAQKDDIAKGWPEKVTHETHEHELVLSRRNVYCCDGCEDEGDNWSYYCKECDFDLHPNCALGDKGSINGAKEEEKPKDGWVCDGDVCTKA