Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69679.t1 | XP_013445999.1 | 97.6 | 336 | 8 | 0 | 1 | 336 | 51 | 386 | 5.20E-191 | 676.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69679.t1 | A0A072TRK0 | 97.6 | 336 | 8 | 0 | 1 | 336 | 39 | 374 | 3.8e-191 | 676.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene69679 | 0.801548 | 8.55E-49 | -1.69E-46 |
| MS.gene04991 | MS.gene69679 | -0.806494 | 8.01E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene69679 | 0.800314 | 1.53E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene69679 | -0.816152 | 6.41E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene69679 | 0.826211 | 3.07E-54 | -1.69E-46 |
| MS.gene05761 | MS.gene69679 | 0.803021 | 4.25E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene69679 | 0.818217 | 2.20E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene69679 | 0.8077 | 4.45E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69679.t1 | MTR_8g064820 | 97.619 | 336 | 8 | 0 | 1 | 336 | 51 | 386 | 0.0 | 685 |
| MS.gene69679.t1 | MTR_8g064820 | 97.619 | 336 | 8 | 0 | 1 | 336 | 39 | 374 | 0.0 | 684 |
| MS.gene69679.t1 | MTR_8g064820 | 97.619 | 336 | 8 | 0 | 1 | 336 | 2 | 337 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69679.t1 | AT1G70480 | 59.006 | 322 | 117 | 6 | 1 | 319 | 14 | 323 | 1.50e-126 | 366 |
| MS.gene69679.t1 | AT1G70480 | 60.129 | 311 | 109 | 6 | 12 | 319 | 7 | 305 | 9.56e-126 | 363 |
| MS.gene69679.t1 | AT1G23560 | 51.163 | 258 | 125 | 1 | 32 | 288 | 30 | 287 | 1.02e-94 | 285 |
| MS.gene69679.t1 | AT1G23560 | 51.163 | 258 | 125 | 1 | 32 | 288 | 30 | 287 | 1.02e-94 | 285 |
| MS.gene69679.t1 | AT1G23600 | 39.167 | 240 | 129 | 7 | 62 | 286 | 28 | 265 | 3.46e-53 | 176 |
| MS.gene69679.t1 | AT1G23690 | 40.367 | 218 | 117 | 5 | 70 | 275 | 44 | 260 | 1.65e-52 | 174 |
| MS.gene69679.t1 | AT1G23520 | 40.090 | 222 | 121 | 6 | 77 | 287 | 42 | 262 | 2.81e-51 | 171 |
| MS.gene69679.t1 | AT1G23690 | 38.532 | 218 | 116 | 5 | 70 | 275 | 44 | 255 | 4.68e-49 | 165 |
| MS.gene69679.t1 | AT1G23520 | 39.189 | 222 | 117 | 7 | 77 | 287 | 42 | 256 | 1.53e-47 | 161 |
| MS.gene69679.t1 | AT1G23640 | 39.462 | 223 | 121 | 6 | 76 | 286 | 42 | 262 | 3.27e-47 | 160 |
| MS.gene69679.t1 | AT1G23670 | 40.084 | 237 | 126 | 8 | 65 | 287 | 29 | 263 | 1.86e-46 | 159 |
| MS.gene69679.t1 | AT1G23660 | 38.009 | 221 | 125 | 5 | 77 | 286 | 43 | 262 | 3.49e-46 | 158 |
| MS.gene69679.t1 | AT1G23690 | 40.000 | 175 | 96 | 3 | 110 | 275 | 1 | 175 | 2.27e-42 | 145 |
| MS.gene69679.t1 | AT2G27670 | 35.776 | 232 | 136 | 5 | 59 | 278 | 49 | 279 | 2.42e-41 | 146 |
| MS.gene69679.t1 | AT1G23645 | 45.395 | 152 | 77 | 3 | 139 | 286 | 75 | 224 | 4.07e-39 | 138 |
| MS.gene69679.t1 | AT1G23600 | 43.333 | 150 | 83 | 2 | 139 | 286 | 70 | 219 | 3.87e-38 | 135 |
| MS.gene69679.t1 | AT1G23590 | 39.362 | 188 | 96 | 5 | 75 | 249 | 29 | 211 | 4.83e-38 | 135 |
| MS.gene69679.t1 | AT1G23590 | 39.362 | 188 | 96 | 5 | 75 | 249 | 7 | 189 | 8.42e-38 | 134 |
| MS.gene69679.t1 | AT1G23670 | 43.506 | 154 | 82 | 4 | 139 | 287 | 65 | 218 | 2.35e-33 | 123 |
| MS.gene69679.t1 | AT1G23570 | 42.361 | 144 | 77 | 3 | 139 | 278 | 1 | 142 | 7.34e-33 | 120 |
| MS.gene69679.t1 | AT1G23690 | 33.649 | 211 | 93 | 6 | 70 | 275 | 44 | 212 | 8.25e-33 | 122 |
| MS.gene69679.t1 | AT1G23570 | 42.361 | 144 | 77 | 3 | 139 | 278 | 78 | 219 | 2.57e-32 | 121 |
| MS.gene69679.t1 | AT1G23570 | 42.657 | 143 | 76 | 3 | 140 | 278 | 77 | 217 | 7.02e-32 | 120 |
| MS.gene69679.t1 | AT1G23580 | 41.176 | 153 | 84 | 3 | 139 | 287 | 47 | 197 | 4.72e-31 | 117 |
| MS.gene69679.t1 | AT1G23520 | 37.500 | 120 | 65 | 4 | 77 | 187 | 42 | 160 | 1.43e-18 | 82.4 |
| MS.gene69679.t1 | AT1G23510 | 34.058 | 138 | 79 | 4 | 77 | 202 | 46 | 183 | 2.03e-16 | 77.0 |
| MS.gene69679.t1 | AT1G23510 | 33.577 | 137 | 79 | 4 | 78 | 202 | 1 | 137 | 8.14e-16 | 73.9 |
| MS.gene69679.t1 | AT1G23510 | 33.577 | 137 | 79 | 4 | 78 | 202 | 1 | 137 | 8.14e-16 | 73.9 |
Find 71 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTGTTACGGGTTTAA+AGG | 0.177504 | 8.3:+37142857 | None:intergenic |
| CACTATTTCGATTAATGTTT+TGG | 0.189652 | 8.3:-37143458 | MS.gene69679:CDS |
| CTTTCCTTGAATCTCTTCTT+TGG | 0.202487 | 8.3:+37142635 | None:intergenic |
| TCCTCTCAAATACCATGATA+TGG | 0.256091 | 8.3:+37142743 | None:intergenic |
| TTGAAAACTCTTCTATTATC+AGG | 0.264428 | 8.3:+37143831 | None:intergenic |
| ATCTTCAGCAAGCAGCTATT+TGG | 0.282634 | 8.3:-37143501 | MS.gene69679:CDS |
| CTCATATCCTCCTCTGATTC+TGG | 0.283328 | 8.3:+37142668 | None:intergenic |
| CAGCTATTTGGAGATTTCTT+TGG | 0.298357 | 8.3:-37143489 | MS.gene69679:CDS |
| AGTGATATCCAGAAAAGTTT+TGG | 0.302534 | 8.3:-37143551 | MS.gene69679:CDS |
| CATGGAAAGAAAATCCTTCT+TGG | 0.315393 | 8.3:-37144414 | MS.gene69679:CDS |
| ATTGCAGGATCCAATCGTTT+TGG | 0.317967 | 8.3:+37144680 | None:intergenic |
| CAAAACATGAAGGAATGAAT+TGG | 0.343925 | 8.3:-37144510 | MS.gene69679:CDS |
| TCCTTTGTTACGGGTTTAAA+GGG | 0.344218 | 8.3:+37142858 | None:intergenic |
| GAGGTTGCAAAGAGAACCTT+TGG | 0.345597 | 8.3:+37143911 | None:intergenic |
| TGGAGATTTCTTTGGTGGTC+TGG | 0.348608 | 8.3:-37143481 | MS.gene69679:CDS |
| TTGTAATCTTCCTTTGTTAC+GGG | 0.356737 | 8.3:+37142849 | None:intergenic |
| AAAACATGAAGGAATGAATT+GGG | 0.369792 | 8.3:-37144509 | MS.gene69679:CDS |
| GTTGCTTCGTCGACAAATAA+AGG | 0.370008 | 8.3:+37142888 | None:intergenic |
| ACTATATTATATACTGCATC+AGG | 0.370343 | 8.3:+37143861 | None:intergenic |
| GGGAGATCTGTTCAGAGAAA+TGG | 0.373735 | 8.3:-37144487 | MS.gene69679:CDS |
| ACAAGAGGAAAAGGAAGAAT+TGG | 0.378739 | 8.3:-37142819 | MS.gene69679:CDS |
| CTGGCTGAAGTATTTGTTGT+AGG | 0.429492 | 8.3:+37142784 | None:intergenic |
| CTATTTGGAGATTTCTTTGG+TGG | 0.430423 | 8.3:-37143486 | MS.gene69679:CDS |
| ATGGAAAGAAAATCCTTCTT+GGG | 0.431591 | 8.3:-37144413 | MS.gene69679:CDS |
| TATAAGCATTTCAGTTGTCT+TGG | 0.439312 | 8.3:+37142713 | None:intergenic |
| AGTTAGGTTTCCAAAACGAT+TGG | 0.453278 | 8.3:-37144690 | MS.gene69679:CDS |
| GGAGGTGGAGGGACAATGGC+TGG | 0.454095 | 8.3:+37142765 | None:intergenic |
| ATTGTAATCTTCCTTTGTTA+CGG | 0.464373 | 8.3:+37142848 | None:intergenic |
| GGAGATCTGTTCAGAGAAAT+GGG | 0.464902 | 8.3:-37144486 | MS.gene69679:CDS |
| AATATGTGTACAAGAGGAAA+AGG | 0.468904 | 8.3:-37142828 | MS.gene69679:CDS |
| CAAGTTTCAAAATATTGTAA+AGG | 0.475448 | 8.3:-37144630 | MS.gene69679:intron |
| CCTCTCAAATACCATGATAT+GGG | 0.484566 | 8.3:+37142744 | None:intergenic |
| CTCAATGTAGAAGTTGATGT+TGG | 0.487073 | 8.3:-37143891 | MS.gene69679:CDS |
| CCGATCCTCACCTCTACTAC+TGG | 0.493061 | 8.3:+37144379 | None:intergenic |
| TACCATGATATGGGAGGTGG+AGG | 0.496174 | 8.3:+37142753 | None:intergenic |
| CAGAATCAGAGGAGGATATG+AGG | 0.498598 | 8.3:-37142667 | MS.gene69679:CDS |
| TGTTATTTGTGTTAGCTATG+AGG | 0.504906 | 8.3:+37142595 | None:intergenic |
| TCCCTCCACCTCCCATATCA+TGG | 0.510199 | 8.3:-37142755 | MS.gene69679:CDS |
| TCAATGTAGAAGTTGATGTT+GGG | 0.514333 | 8.3:-37143890 | MS.gene69679:CDS |
| AAGTTCAAGCAAACCAAGAC+AGG | 0.515646 | 8.3:-37142948 | MS.gene69679:CDS |
| TGAAGGAGCAAGTGCAAGCA+TGG | 0.518952 | 8.3:-37144432 | MS.gene69679:CDS |
| ATGTCCAAAGAAGAGATTCA+AGG | 0.531890 | 8.3:-37142639 | MS.gene69679:CDS |
| CAAATAACATTAAAGAGAGA+TGG | 0.537821 | 8.3:-37142581 | MS.gene69679:CDS |
| AAATACCATGATATGGGAGG+TGG | 0.553944 | 8.3:+37142750 | None:intergenic |
| CAACATCAACTTCTACATTG+AGG | 0.558943 | 8.3:+37143892 | None:intergenic |
| TGCTTCTGAAGCTGAACTGA+AGG | 0.567738 | 8.3:-37144449 | MS.gene69679:CDS |
| TCCCTTTAAACCCGTAACAA+AGG | 0.570918 | 8.3:-37142859 | MS.gene69679:CDS |
| TGGCAGGTGACTGTTCCCAA+AGG | 0.575508 | 8.3:-37143927 | MS.gene69679:intron |
| GAAGAGATTCAAGGAAAGCA+TGG | 0.575520 | 8.3:-37142630 | MS.gene69679:CDS |
| AAAATCATTTAGCAGTCTAA+CGG | 0.580323 | 8.3:+37142519 | None:intergenic |
| TATGGGAGGTGGAGGGACAA+TGG | 0.588925 | 8.3:+37142761 | None:intergenic |
| GATTACAATATGTGTACAAG+AGG | 0.593335 | 8.3:-37142834 | MS.gene69679:CDS |
| AGGTTGCAAAGAGAACCTTT+GGG | 0.595888 | 8.3:+37143912 | None:intergenic |
| CTATATTATATACTGCATCA+GGG | 0.600212 | 8.3:+37143862 | None:intergenic |
| TTTATGATGGGTGAATCAGA+GGG | 0.600858 | 8.3:-37144749 | None:intergenic |
| CCCATATCATGGTATTTGAG+AGG | 0.605593 | 8.3:-37142744 | MS.gene69679:CDS |
| AGTAGATTAGCAAAACATGA+AGG | 0.605643 | 8.3:-37144520 | MS.gene69679:CDS |
| GGTGGCTTATCAACCCAAGA+AGG | 0.614982 | 8.3:+37144400 | None:intergenic |
| TATATTATATACTGCATCAG+GGG | 0.615285 | 8.3:+37143863 | None:intergenic |
| TGATAAGCCACCAGTAGTAG+AGG | 0.615534 | 8.3:-37144389 | MS.gene69679:intron |
| ATCCTCACCTCTACTACTGG+TGG | 0.617260 | 8.3:+37144382 | None:intergenic |
| AAACATGAAGGAATGAATTG+GGG | 0.624768 | 8.3:-37144508 | MS.gene69679:CDS |
| AAAATTTGAGGGCTGCTGGA+GGG | 0.625928 | 8.3:-37142916 | MS.gene69679:CDS |
| GCAGAAACTACCAGAATCAG+AGG | 0.632706 | 8.3:-37142678 | MS.gene69679:CDS |
| CTCAAATACCATGATATGGG+AGG | 0.639863 | 8.3:+37142747 | None:intergenic |
| ATATTATATACTGCATCAGG+GGG | 0.664252 | 8.3:+37143864 | None:intergenic |
| ATGATGGGTGAATCAGAGGG+TGG | 0.670961 | 8.3:-37144746 | MS.gene69679:CDS |
| AACATGAAGGAATGAATTGG+GGG | 0.686683 | 8.3:-37144507 | MS.gene69679:CDS |
| TGATGAGGGTCATAGGCAAG+TGG | 0.696850 | 8.3:-37143527 | MS.gene69679:CDS |
| GAAACTACCAGAATCAGAGG+AGG | 0.701042 | 8.3:-37142675 | MS.gene69679:CDS |
| ACCATGATATGGGAGGTGGA+GGG | 0.711287 | 8.3:+37142754 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGAAGTTTAAATCAAT+AGG | + | chr8.3:37143187-37143206 | None:intergenic | 15.0% |
| !!! | AATTCTAATTCTTCAATTTT+AGG | + | chr8.3:37144037-37144056 | None:intergenic | 15.0% |
| !! | ACAAAAAATTTAGATATTGC+AGG | + | chr8.3:37142608-37142627 | None:intergenic | 20.0% |
| !! | ATCCATTCATTATAAGAAAA+AGG | + | chr8.3:37143876-37143895 | None:intergenic | 20.0% |
| !! | ATTATTTCAATTCTTCTTGA+AGG | + | chr8.3:37143278-37143297 | None:intergenic | 20.0% |
| !! | CAAGTTTCAAAATATTGTAA+AGG | - | chr8.3:37142640-37142659 | MS.gene69679:CDS | 20.0% |
| !!! | ATCATACACACATTTTTTAA+CGG | - | chr8.3:37144064-37144083 | MS.gene69679:intron | 20.0% |
| !!! | ATCCTTTTTCTTATAATGAA+TGG | - | chr8.3:37143871-37143890 | MS.gene69679:CDS | 20.0% |
| !!! | ATTCTAAATGATCTTTTTCT+TGG | - | chr8.3:37143690-37143709 | MS.gene69679:intron | 20.0% |
| !!! | CATAAATGAAGTATCTAATA+AGG | - | chr8.3:37143201-37143220 | MS.gene69679:intron | 20.0% |
| !!! | TGAATGGATTTTATATTTGT+TGG | - | chr8.3:37143887-37143906 | MS.gene69679:CDS | 20.0% |
| ! | AAAACATGAAGGAATGAATT+GGG | - | chr8.3:37142761-37142780 | MS.gene69679:CDS | 25.0% |
| ! | ACTATATTATATACTGCATC+AGG | + | chr8.3:37143412-37143431 | None:intergenic | 25.0% |
| ! | AGGATTCATGAAAAAATTTG+AGG | - | chr8.3:37144342-37144361 | MS.gene69679:intron | 25.0% |
| ! | ATTGTAATCTTCCTTTGTTA+CGG | + | chr8.3:37144425-37144444 | None:intergenic | 25.0% |
| ! | CAAATAACATTAAAGAGAGA+TGG | - | chr8.3:37144689-37144708 | MS.gene69679:CDS | 25.0% |
| ! | CTATATTATATACTGCATCA+GGG | + | chr8.3:37143411-37143430 | None:intergenic | 25.0% |
| ! | GGATTCATGAAAAAATTTGA+GGG | - | chr8.3:37144343-37144362 | MS.gene69679:intron | 25.0% |
| ! | TATATTATATACTGCATCAG+GGG | + | chr8.3:37143410-37143429 | None:intergenic | 25.0% |
| ! | TTACTGAAACAGAAGATTAT+TGG | - | chr8.3:37142952-37142971 | MS.gene69679:CDS | 25.0% |
| ! | TTGAAAACTCTTCTATTATC+AGG | + | chr8.3:37143442-37143461 | None:intergenic | 25.0% |
| !! | CACTATTTCGATTAATGTTT+TGG | - | chr8.3:37143812-37143831 | MS.gene69679:intron | 25.0% |
| !! | TACTTTTCATCCAACAAAAA+AGG | - | chr8.3:37144263-37144282 | MS.gene69679:intron | 25.0% |
| !!! | ACAATATTTTGAAACTTGTG+AGG | + | chr8.3:37142638-37142657 | None:intergenic | 25.0% |
| !!! | AGATATACATCCTTTTTTGT+TGG | + | chr8.3:37144276-37144295 | None:intergenic | 25.0% |
| !!! | ATATTTGTTGGACAATTTTG+AGG | - | chr8.3:37143899-37143918 | MS.gene69679:CDS | 25.0% |
| !!! | ATCTTACTGCTACTTAATTT+TGG | - | chr8.3:37144292-37144311 | MS.gene69679:intron | 25.0% |
| !!! | ATTCTTCAATTTTAGGTAGT+TGG | + | chr8.3:37144030-37144049 | None:intergenic | 25.0% |
| !!! | TGAATAGGATTGATTTTCTT+TGG | - | chr8.3:37142915-37142934 | MS.gene69679:CDS | 25.0% |
| !!! | TTAAAGAGAGATGGATTTTA+AGG | - | chr8.3:37144698-37144717 | MS.gene69679:CDS | 25.0% |
| AAACATGAAGGAATGAATTG+GGG | - | chr8.3:37142762-37142781 | MS.gene69679:CDS | 30.0% | |
| AAGGCATATGAAAGTTAAGT+AGG | + | chr8.3:37143259-37143278 | None:intergenic | 30.0% | |
| AATATGTGTACAAGAGGAAA+AGG | - | chr8.3:37144442-37144461 | MS.gene69679:CDS | 30.0% | |
| AGTAGATTAGCAAAACATGA+AGG | - | chr8.3:37142750-37142769 | MS.gene69679:CDS | 30.0% | |
| ATATTATATACTGCATCAGG+GGG | + | chr8.3:37143409-37143428 | None:intergenic | 30.0% | |
| ATGGAAAGAAAATCCTTCTT+GGG | - | chr8.3:37142857-37142876 | MS.gene69679:CDS | 30.0% | |
| CAAAACATGAAGGAATGAAT+TGG | - | chr8.3:37142760-37142779 | MS.gene69679:CDS | 30.0% | |
| CCAGAAAGAATGAAAAAGTT+AGG | - | chr8.3:37142564-37142583 | MS.gene69679:CDS | 30.0% | |
| GATTACAATATGTGTACAAG+AGG | - | chr8.3:37144436-37144455 | MS.gene69679:CDS | 30.0% | |
| TATAAGCATTTCAGTTGTCT+TGG | + | chr8.3:37144560-37144579 | None:intergenic | 30.0% | |
| TCGTAGTAACAAACAATCAA+CGG | + | chr8.3:37144198-37144217 | None:intergenic | 30.0% | |
| TTGTAATCTTCCTTTGTTAC+GGG | + | chr8.3:37144424-37144443 | None:intergenic | 30.0% | |
| ! | AAATGATCTTTTTCTTGGTC+AGG | - | chr8.3:37143695-37143714 | MS.gene69679:intron | 30.0% |
| ! | AGTGATATCCAGAAAAGTTT+TGG | - | chr8.3:37143719-37143738 | MS.gene69679:intron | 30.0% |
| ! | GTCTCAGTAAATGTTTCTTT+TGG | - | chr8.3:37143323-37143342 | MS.gene69679:intron | 30.0% |
| ! | TGTTATTTGTGTTAGCTATG+AGG | + | chr8.3:37144678-37144697 | None:intergenic | 30.0% |
| !! | GTACTCATAAGTTTTAGTGT+CGG | - | chr8.3:37143115-37143134 | MS.gene69679:intron | 30.0% |
| !! | TCAATGTAGAAGTTGATGTT+GGG | - | chr8.3:37143380-37143399 | MS.gene69679:intron | 30.0% |
| !!! | AGAAAAGTTTTGGTTGATGA+GGG | - | chr8.3:37143729-37143748 | MS.gene69679:intron | 30.0% |
| !!! | CCTAACTTTTTCATTCTTTC+TGG | + | chr8.3:37142567-37142586 | None:intergenic | 30.0% |
| !!! | TTTTTTCATGAATCCTGTCT+TGG | + | chr8.3:37144338-37144357 | None:intergenic | 30.0% |
| AACATGAAGGAATGAATTGG+GGG | - | chr8.3:37142763-37142782 | MS.gene69679:CDS | 35.0% | |
| ACAAGAGGAAAAGGAAGAAT+TGG | - | chr8.3:37144451-37144470 | MS.gene69679:CDS | 35.0% | |
| ACAGAAATGACTACTCTGTA+AGG | - | chr8.3:37143844-37143863 | MS.gene69679:CDS | 35.0% | |
| AGTTAGGTTTCCAAAACGAT+TGG | - | chr8.3:37142580-37142599 | MS.gene69679:CDS | 35.0% | |
| ATAAGTCTGCTCAATGTGTT+TGG | - | chr8.3:37143492-37143511 | MS.gene69679:CDS | 35.0% | |
| ATGTCCAAAGAAGAGATTCA+AGG | - | chr8.3:37144631-37144650 | MS.gene69679:CDS | 35.0% | |
| CAACATCAACTTCTACATTG+AGG | + | chr8.3:37143381-37143400 | None:intergenic | 35.0% | |
| CAGCTATTTGGAGATTTCTT+TGG | - | chr8.3:37143781-37143800 | MS.gene69679:intron | 35.0% | |
| CATGGAAAGAAAATCCTTCT+TGG | - | chr8.3:37142856-37142875 | MS.gene69679:CDS | 35.0% | |
| CCTCTCAAATACCATGATAT+GGG | + | chr8.3:37144529-37144548 | None:intergenic | 35.0% | |
| CTATTTGGAGATTTCTTTGG+TGG | - | chr8.3:37143784-37143803 | MS.gene69679:intron | 35.0% | |
| CTTTCCTTGAATCTCTTCTT+TGG | + | chr8.3:37144638-37144657 | None:intergenic | 35.0% | |
| TAGTCATCAATCCTATGCTA+TGG | - | chr8.3:37142664-37142683 | MS.gene69679:CDS | 35.0% | |
| TCCTCTCAAATACCATGATA+TGG | + | chr8.3:37144530-37144549 | None:intergenic | 35.0% | |
| TCCTTTGTTACGGGTTTAAA+GGG | + | chr8.3:37144415-37144434 | None:intergenic | 35.0% | |
| TTCCTTTGTTACGGGTTTAA+AGG | + | chr8.3:37144416-37144435 | None:intergenic | 35.0% | |
| ! | CAGTAAATGTTTCTTTTGGC+AGG | - | chr8.3:37143327-37143346 | MS.gene69679:intron | 35.0% |
| ! | CTCATCAACCAAAACTTTTC+TGG | + | chr8.3:37143730-37143749 | None:intergenic | 35.0% |
| ! | GGCACATAAAGTCAATTTTG+AGG | - | chr8.3:37143920-37143939 | MS.gene69679:CDS | 35.0% |
| !! | ATTTGTTTCTACGACACCAA+GGG | + | chr8.3:37144172-37144191 | None:intergenic | 35.0% |
| !! | CTCAATGTAGAAGTTGATGT+TGG | - | chr8.3:37143379-37143398 | MS.gene69679:intron | 35.0% |
| !! | TTGGTGTCGTAGAAACAAAT+GGG | - | chr8.3:37144172-37144191 | MS.gene69679:intron | 35.0% |
| !!! | CAGAAAAGTTTTGGTTGATG+AGG | - | chr8.3:37143728-37143747 | MS.gene69679:intron | 35.0% |
| AAATACCATGATATGGGAGG+TGG | + | chr8.3:37144523-37144542 | None:intergenic | 40.0% | |
| AAGTTCAAGCAAACCAAGAC+AGG | - | chr8.3:37144322-37144341 | MS.gene69679:intron | 40.0% | |
| AGGTTGCAAAGAGAACCTTT+GGG | + | chr8.3:37143361-37143380 | None:intergenic | 40.0% | |
| ATCTTCAGCAAGCAGCTATT+TGG | - | chr8.3:37143769-37143788 | MS.gene69679:intron | 40.0% | |
| CAAACCATTAGCCATAGCAT+AGG | + | chr8.3:37142678-37142697 | None:intergenic | 40.0% | |
| CAATCCTATGCTATGGCTAA+TGG | - | chr8.3:37142671-37142690 | MS.gene69679:CDS | 40.0% | |
| CCCATATCATGGTATTTGAG+AGG | - | chr8.3:37144526-37144545 | MS.gene69679:CDS | 40.0% | |
| CCTCTCTTATAAGACTCTCT+TGG | - | chr8.3:37143955-37143974 | MS.gene69679:intron | 40.0% | |
| CTATGCTATGGCTAATGGTT+TGG | - | chr8.3:37142676-37142695 | MS.gene69679:CDS | 40.0% | |
| CTCAAATACCATGATATGGG+AGG | + | chr8.3:37144526-37144545 | None:intergenic | 40.0% | |
| GAAGAGATTCAAGGAAAGCA+TGG | - | chr8.3:37144640-37144659 | MS.gene69679:CDS | 40.0% | |
| GGAGATCTGTTCAGAGAAAT+GGG | - | chr8.3:37142784-37142803 | MS.gene69679:CDS | 40.0% | |
| GTTGCTTCGTCGACAAATAA+AGG | + | chr8.3:37144385-37144404 | None:intergenic | 40.0% | |
| TCCCTTTAAACCCGTAACAA+AGG | - | chr8.3:37144411-37144430 | MS.gene69679:CDS | 40.0% | |
| TCTTTAACCTGTTCCTGTCT+AGG | - | chr8.3:37143010-37143029 | MS.gene69679:intron | 40.0% | |
| TGAAAAAATTTGAGGGCTGC+TGG | - | chr8.3:37144350-37144369 | MS.gene69679:intron | 40.0% | |
| ! | ACACTGACAATCTGAAGTGT+CGG | - | chr8.3:37143148-37143167 | MS.gene69679:intron | 40.0% |
| ! | ATTGCAGGATCCAATCGTTT+TGG | + | chr8.3:37142593-37142612 | None:intergenic | 40.0% |
| ! | CCAAGAGAGTCTTATAAGAG+AGG | + | chr8.3:37143958-37143977 | None:intergenic | 40.0% |
| !! | AGTTTTAGTGTCGGACACTT+AGG | - | chr8.3:37143124-37143143 | MS.gene69679:intron | 40.0% |
| !! | CATTTGTTTCTACGACACCA+AGG | + | chr8.3:37144173-37144192 | None:intergenic | 40.0% |
| !! | CTGGCTGAAGTATTTGTTGT+AGG | + | chr8.3:37144489-37144508 | None:intergenic | 40.0% |
| !! | CTTGGTGTCGTAGAAACAAA+TGG | - | chr8.3:37144171-37144190 | MS.gene69679:intron | 40.0% |
| !!! | TTTTGGTTGATGAGGGTCAT+AGG | - | chr8.3:37143736-37143755 | MS.gene69679:intron | 40.0% |
| AAAAATTTGAGGGCTGCTGG+AGG | - | chr8.3:37144353-37144372 | MS.gene69679:intron | 45.0% | |
| AAAATTTGAGGGCTGCTGGA+GGG | - | chr8.3:37144354-37144373 | MS.gene69679:intron | 45.0% | |
| CAGAATCAGAGGAGGATATG+AGG | - | chr8.3:37144603-37144622 | MS.gene69679:intron | 45.0% | |
| CTCATATCCTCCTCTGATTC+TGG | + | chr8.3:37144605-37144624 | None:intergenic | 45.0% | |
| GAAACTACCAGAATCAGAGG+AGG | - | chr8.3:37144595-37144614 | MS.gene69679:intron | 45.0% | |
| GAGGTTGCAAAGAGAACCTT+TGG | + | chr8.3:37143362-37143381 | None:intergenic | 45.0% | |
| GCAGAAACTACCAGAATCAG+AGG | - | chr8.3:37144592-37144611 | MS.gene69679:intron | 45.0% | |
| GGGAGATCTGTTCAGAGAAA+TGG | - | chr8.3:37142783-37142802 | MS.gene69679:CDS | 45.0% | |
| TGATAAGCCACCAGTAGTAG+AGG | - | chr8.3:37142881-37142900 | MS.gene69679:CDS | 45.0% | |
| ! | TGGAGATTTCTTTGGTGGTC+TGG | - | chr8.3:37143789-37143808 | MS.gene69679:intron | 45.0% |
| !! | AGGAAGCACTGCTACATACA+AGG | - | chr8.3:37143030-37143049 | MS.gene69679:intron | 45.0% |
| !! | TGCTTCTGAAGCTGAACTGA+AGG | - | chr8.3:37142821-37142840 | MS.gene69679:CDS | 45.0% |
| ACCATGATATGGGAGGTGGA+GGG | + | chr8.3:37144519-37144538 | None:intergenic | 50.0% | |
| AGTGCTTCCTAGACAGGAAC+AGG | + | chr8.3:37143020-37143039 | None:intergenic | 50.0% | |
| ATCCTCACCTCTACTACTGG+TGG | + | chr8.3:37142891-37142910 | None:intergenic | 50.0% | |
| CCAAGGGACGATGTTGTGAT+TGG | + | chr8.3:37144156-37144175 | None:intergenic | 50.0% | |
| CCAATCACAACATCGTCCCT+TGG | - | chr8.3:37144153-37144172 | MS.gene69679:intron | 50.0% | |
| CCAGTAGTAGAGGTGAGGAT+CGG | - | chr8.3:37142891-37142910 | MS.gene69679:CDS | 50.0% | |
| CTAAAACGACACAGACACGC+AGG | - | chr8.3:37143055-37143074 | MS.gene69679:intron | 50.0% | |
| GAGGTGAGGATCGGTTGAAT+AGG | - | chr8.3:37142900-37142919 | MS.gene69679:CDS | 50.0% | |
| GGTGGCTTATCAACCCAAGA+AGG | + | chr8.3:37142873-37142892 | None:intergenic | 50.0% | |
| TACCATGATATGGGAGGTGG+AGG | + | chr8.3:37144520-37144539 | None:intergenic | 50.0% | |
| TGAAGGAGCAAGTGCAAGCA+TGG | - | chr8.3:37142838-37142857 | MS.gene69679:CDS | 50.0% | |
| TGATGAGGGTCATAGGCAAG+TGG | - | chr8.3:37143743-37143762 | MS.gene69679:intron | 50.0% | |
| TGTAGCAGTGCTTCCTAGAC+AGG | + | chr8.3:37143026-37143045 | None:intergenic | 50.0% | |
| !!! | CTGCGTGTCTGTGTCGTTTT+AGG | + | chr8.3:37143057-37143076 | None:intergenic | 50.0% |
| AGCCACCAGTAGTAGAGGTG+AGG | - | chr8.3:37142886-37142905 | MS.gene69679:CDS | 55.0% | |
| CCGATCCTCACCTCTACTAC+TGG | + | chr8.3:37142894-37142913 | None:intergenic | 55.0% | |
| TATGGGAGGTGGAGGGACAA+TGG | + | chr8.3:37144512-37144531 | None:intergenic | 55.0% | |
| TCCCTCCACCTCCCATATCA+TGG | - | chr8.3:37144515-37144534 | MS.gene69679:CDS | 55.0% | |
| TGGCAGGTGACTGTTCCCAA+AGG | - | chr8.3:37143343-37143362 | MS.gene69679:intron | 55.0% | |
| !! | CTGAAGTGTCGGCGCTACAT+AGG | - | chr8.3:37143159-37143178 | MS.gene69679:intron | 55.0% |
| ACGACACAGACACGCAGGCA+TGG | - | chr8.3:37143060-37143079 | MS.gene69679:intron | 60.0% | |
| CGACACAGACACGCAGGCAT+GGG | - | chr8.3:37143061-37143080 | MS.gene69679:intron | 60.0% | |
| GGAGGTGGAGGGACAATGGC+TGG | + | chr8.3:37144508-37144527 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 37142527 | 37144765 | 37142527 | ID=MS.gene69679 |
| chr8.3 | mRNA | 37142527 | 37144765 | 37142527 | ID=MS.gene69679.t1;Parent=MS.gene69679 |
| chr8.3 | exon | 37144631 | 37144765 | 37144631 | ID=MS.gene69679.t1.exon1;Parent=MS.gene69679.t1 |
| chr8.3 | CDS | 37144631 | 37144765 | 37144631 | ID=cds.MS.gene69679.t1;Parent=MS.gene69679.t1 |
| chr8.3 | exon | 37144390 | 37144551 | 37144390 | ID=MS.gene69679.t1.exon2;Parent=MS.gene69679.t1 |
| chr8.3 | CDS | 37144390 | 37144551 | 37144390 | ID=cds.MS.gene69679.t1;Parent=MS.gene69679.t1 |
| chr8.3 | exon | 37143821 | 37143943 | 37143821 | ID=MS.gene69679.t1.exon3;Parent=MS.gene69679.t1 |
| chr8.3 | CDS | 37143821 | 37143943 | 37143821 | ID=cds.MS.gene69679.t1;Parent=MS.gene69679.t1 |
| chr8.3 | exon | 37143432 | 37143575 | 37143432 | ID=MS.gene69679.t1.exon4;Parent=MS.gene69679.t1 |
| chr8.3 | CDS | 37143432 | 37143575 | 37143432 | ID=cds.MS.gene69679.t1;Parent=MS.gene69679.t1 |
| chr8.3 | exon | 37142527 | 37142973 | 37142527 | ID=MS.gene69679.t1.exon5;Parent=MS.gene69679.t1 |
| chr8.3 | CDS | 37142527 | 37142973 | 37142527 | ID=cds.MS.gene69679.t1;Parent=MS.gene69679.t1 |
| Gene Sequence |
| Protein sequence |
