Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69887.t1 | XP_003601331.1 | 98 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 7.60E-201 | 709.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69887.t1 | P38812 | 34.1 | 164 | 99 | 5 | 141 | 299 | 1 | 160 | 2.0e-16 | 88.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69887.t1 | G7IEQ2 | 98.0 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 5.5e-201 | 709.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene69887 | 0.830181 | 3.39E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene69887 | 0.818553 | 1.85E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene69887 | 0.860857 | 1.54E-63 | -1.69E-46 |
| MS.gene054376 | MS.gene69887 | 0.823961 | 1.04E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene69887 | 0.832602 | 8.61E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene69887 | 0.808701 | 2.72E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene69887 | 0.809355 | 1.97E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene69887 | 0.809183 | 2.15E-50 | -1.69E-46 |
| MS.gene058845 | MS.gene69887 | 0.826148 | 3.18E-54 | -1.69E-46 |
| MS.gene059326 | MS.gene69887 | 0.824352 | 8.45E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene69887 | 0.805554 | 1.26E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69887.t1 | MTR_3g079530 | 98.011 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 0.0 | 720 |
| MS.gene69887.t1 | MTR_1g046360 | 97.159 | 352 | 10 | 0 | 1 | 352 | 1 | 352 | 0.0 | 718 |
| MS.gene69887.t1 | MTR_3g079530 | 97.778 | 315 | 7 | 0 | 1 | 315 | 1 | 315 | 0.0 | 642 |
| MS.gene69887.t1 | MTR_1g046360 | 97.143 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69887.t1 | AT3G58830 | 63.469 | 271 | 95 | 3 | 81 | 349 | 72 | 340 | 6.86e-118 | 345 |
| MS.gene69887.t1 | AT3G58830 | 63.469 | 271 | 95 | 3 | 81 | 349 | 77 | 345 | 6.96e-118 | 345 |
| MS.gene69887.t1 | AT3G58830 | 65.823 | 237 | 77 | 3 | 81 | 315 | 77 | 311 | 1.98e-105 | 313 |
Find 79 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTGTGGTTTCTGGTTTC+TGG | 0.057163 | 3.4:+75869021 | None:intergenic |
| CCCTTCACTGACATTGTTTA+TGG | 0.078059 | 3.4:-75868106 | MS.gene69887:CDS |
| TTGATGTTGACTGTGGTTTC+TGG | 0.127678 | 3.4:+75869014 | None:intergenic |
| GGAATGGGTTTCTAACTATT+TGG | 0.158847 | 3.4:-75868078 | MS.gene69887:CDS |
| ATATGGGGCAGTGACAATTT+TGG | 0.203302 | 3.4:+75868847 | None:intergenic |
| TCTACGTAGAAAGGGATTTA+AGG | 0.208357 | 3.4:-75868788 | MS.gene69887:CDS |
| CAAACCTGCTTAACAATAAA+TGG | 0.212685 | 3.4:+75868028 | None:intergenic |
| GAAGAAATTGAAAAGCATTT+TGG | 0.233420 | 3.4:-75868264 | MS.gene69887:CDS |
| TGCCCTCAAAGTTGATTCTT+TGG | 0.244850 | 3.4:+75868902 | None:intergenic |
| TTATATCAGGAACTGAAATA+TGG | 0.269807 | 3.4:+75868830 | None:intergenic |
| GGGAATGTGGTACGAGCAAC+TGG | 0.332306 | 3.4:+75869284 | None:intergenic |
| GAAAGTTGTAAATCAGAGTT+TGG | 0.356510 | 3.4:-75868688 | MS.gene69887:CDS |
| TCGTTGGGCATGATGATGTC+TGG | 0.366443 | 3.4:+75869263 | None:intergenic |
| GCCTCCACTTGAGTCTTCAT+TGG | 0.369973 | 3.4:-75868710 | MS.gene69887:CDS |
| AGAAGTATTTAATAAGGAAT+AGG | 0.381243 | 3.4:+75869079 | None:intergenic |
| CAGTCAATGTATCTTATATC+AGG | 0.381565 | 3.4:+75868817 | None:intergenic |
| TTTGTCGTTCTGATTTGAAT+TGG | 0.389014 | 3.4:+75869104 | None:intergenic |
| CTCTGTGTCTGAGGAAGACT+TGG | 0.390918 | 3.4:+75869171 | None:intergenic |
| CAAGTGAGAAGTATTTAATA+AGG | 0.394930 | 3.4:+75869073 | None:intergenic |
| TATATCAGGAACTGAAATAT+GGG | 0.405912 | 3.4:+75868831 | None:intergenic |
| GCAGATGTGAAAGCGGCATT+TGG | 0.416507 | 3.4:-75868925 | MS.gene69887:CDS |
| AGGAATCTTGAGAGTACAAT+TGG | 0.419350 | 3.4:-75868494 | MS.gene69887:CDS |
| GGGCATTCTATGTTCAACTA+TGG | 0.421228 | 3.4:-75868884 | MS.gene69887:CDS |
| CTGACATTGTTTATGGCAAT+CGG | 0.424991 | 3.4:-75868099 | MS.gene69887:CDS |
| AAGGGCTAGAAAGCAATTAC+AGG | 0.425208 | 3.4:-75869140 | MS.gene69887:CDS |
| TAGGATCTGGCAATAGCTTC+TGG | 0.429090 | 3.4:+75867679 | None:intergenic |
| TTGTTTATGGCAATCGGAAT+GGG | 0.438839 | 3.4:-75868093 | MS.gene69887:CDS |
| CTGATATAAGATACATTGAC+TGG | 0.441013 | 3.4:-75868816 | MS.gene69887:CDS |
| ATTTCTTCAGCTGTGCCACC+TGG | 0.452323 | 3.4:+75868279 | None:intergenic |
| GGAGCCATTTATTGTTAAGC+AGG | 0.454977 | 3.4:-75868032 | MS.gene69887:intron |
| AGAAGTTTCTCAGAGGGACT+TGG | 0.459372 | 3.4:+75869199 | None:intergenic |
| CTGGGCTGCTCTACGTAGAA+AGG | 0.459911 | 3.4:-75868797 | MS.gene69887:CDS |
| GGCCAAAGAATCAACTTTGA+GGG | 0.460017 | 3.4:-75868904 | MS.gene69887:CDS |
| CTACGTAGAAAGGGATTTAA+GGG | 0.460767 | 3.4:-75868787 | MS.gene69887:CDS |
| GGCTCCTCTGCAAGACTCAA+TGG | 0.471686 | 3.4:+75868049 | None:intergenic |
| GTCCCTCTGAGAAACTTCTA+TGG | 0.478928 | 3.4:-75869195 | MS.gene69887:CDS |
| AGACAGACAAAGGGAATTCA+AGG | 0.479391 | 3.4:-75868989 | MS.gene69887:CDS |
| TACCCTACTCTTTAACGCTC+TGG | 0.487917 | 3.4:-75868732 | MS.gene69887:CDS |
| TGGCCAAAGAATCAACTTTG+AGG | 0.489408 | 3.4:-75868905 | MS.gene69887:CDS |
| GTAAAGTACTGGTCTAGAAG+AGG | 0.490645 | 3.4:-75867717 | MS.gene69887:CDS |
| TTGACACAATGTCTAGGATC+TGG | 0.492519 | 3.4:+75867666 | None:intergenic |
| AAACTACATTTGTAAAGTAC+TGG | 0.493301 | 3.4:-75867728 | MS.gene69887:CDS |
| ATTGTTTATGGCAATCGGAA+TGG | 0.494457 | 3.4:-75868094 | MS.gene69887:CDS |
| GGCCAGAGCGTTAAAGAGTA+GGG | 0.506103 | 3.4:+75868730 | None:intergenic |
| GCTGTATTTAGTAACTCAGC+TGG | 0.507393 | 3.4:-75868655 | MS.gene69887:intron |
| TGGGCTGCTCTACGTAGAAA+GGG | 0.534826 | 3.4:-75868796 | MS.gene69887:CDS |
| AGGGACTTGGCTATCTGCAT+TGG | 0.544545 | 3.4:+75869212 | None:intergenic |
| AGGCCAGAGCGTTAAAGAGT+AGG | 0.550814 | 3.4:+75868729 | None:intergenic |
| TTGTTGCAACTCTGTGTCTG+AGG | 0.551570 | 3.4:+75869162 | None:intergenic |
| AACATCAACTAGACAGACAA+AGG | 0.555337 | 3.4:-75868999 | MS.gene69887:CDS |
| TAAAGTACTGGTCTAGAAGA+GGG | 0.555992 | 3.4:-75867716 | MS.gene69887:CDS |
| GCCATAAACAATGTCAGTGA+AGG | 0.556282 | 3.4:+75868105 | None:intergenic |
| AGACACAGAGTTGCAACAAA+GGG | 0.557784 | 3.4:-75869158 | MS.gene69887:CDS |
| CGTTGGGCATGATGATGTCT+GGG | 0.560325 | 3.4:+75869264 | None:intergenic |
| CCATAAACAATGTCAGTGAA+GGG | 0.567655 | 3.4:+75868106 | None:intergenic |
| CATGATGATGTCTGGGAATG+TGG | 0.568095 | 3.4:+75869271 | None:intergenic |
| GGCAATAGCTTCTGGTCAAG+TGG | 0.568702 | 3.4:+75867687 | None:intergenic |
| ACTGCAGGAGTGAAGAAGCC+AGG | 0.579048 | 3.4:-75868297 | MS.gene69887:intron |
| CAGACACAGAGTTGCAACAA+AGG | 0.579774 | 3.4:-75869159 | MS.gene69887:CDS |
| AGACAAGTCTATCAAGGATG+TGG | 0.585793 | 3.4:+75867636 | None:intergenic |
| ACATCAACTAGACAGACAAA+GGG | 0.586910 | 3.4:-75868998 | MS.gene69887:CDS |
| GACCATAGAAGTTTCTCAGA+GGG | 0.594094 | 3.4:+75869193 | None:intergenic |
| TGAAGCATCAGAGTTAATCA+TGG | 0.595342 | 3.4:-75868238 | MS.gene69887:intron |
| TGTCTAGTTGATGTTGACTG+TGG | 0.599422 | 3.4:+75869007 | None:intergenic |
| GGCTCTTTGACACAATGTCT+AGG | 0.619400 | 3.4:+75867660 | None:intergenic |
| CTTTCCAATGAAGACTCAAG+TGG | 0.631381 | 3.4:+75868706 | None:intergenic |
| ACCATGATGGTTCAAAAGCG+AGG | 0.633614 | 3.4:-75868514 | MS.gene69887:CDS |
| CTTCGTGAGTATGACCATGA+TGG | 0.634215 | 3.4:-75868527 | MS.gene69887:CDS |
| CAAGTCTATCAAGGATGTGG+CGG | 0.639966 | 3.4:+75867639 | None:intergenic |
| AGAGCCATTGAGTCTTGCAG+AGG | 0.643454 | 3.4:-75868053 | MS.gene69887:CDS |
| TGATATAAGATACATTGACT+GGG | 0.644285 | 3.4:-75868815 | MS.gene69887:CDS |
| TCCAATGAAGACTCAAGTGG+AGG | 0.644383 | 3.4:+75868709 | None:intergenic |
| CATAAACAATGTCAGTGAAG+GGG | 0.650053 | 3.4:+75868107 | None:intergenic |
| ATATCAGGAACTGAAATATG+GGG | 0.654119 | 3.4:+75868832 | None:intergenic |
| TGCATTGGCAAGTGATAGAG+TGG | 0.659077 | 3.4:+75869227 | None:intergenic |
| GGAATGTGGTACGAGCAACT+GGG | 0.693669 | 3.4:+75869285 | None:intergenic |
| GGACCATAGAAGTTTCTCAG+AGG | 0.703711 | 3.4:+75869192 | None:intergenic |
| GTGGTGGGCAGATGTGAAAG+CGG | 0.723068 | 3.4:-75868932 | MS.gene69887:CDS |
| GCAGGAGTGAAGAAGCCAGG+TGG | 0.732956 | 3.4:-75868294 | MS.gene69887:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTTAAACCATAAATATT+CGG | - | chr3.4:75868815-75868834 | MS.gene69887:CDS | 15.0% |
| !! | TTCATAAATTAAAATGTACA+AGG | + | chr3.4:75869110-75869129 | None:intergenic | 15.0% |
| !! | CAGAAAGAAATGTTTATAAA+TGG | + | chr3.4:75869168-75869187 | None:intergenic | 20.0% |
| !!! | AGAAGTATTTAATAAGGAAT+AGG | + | chr3.4:75867886-75867905 | None:intergenic | 20.0% |
| ! | AAACTACATTTGTAAAGTAC+TGG | - | chr3.4:75869234-75869253 | MS.gene69887:CDS | 25.0% |
| ! | TAAGCTTATGTTAAAATGCT+AGG | - | chr3.4:75868583-75868602 | MS.gene69887:intron | 25.0% |
| ! | TATATCAGGAACTGAAATAT+GGG | + | chr3.4:75868134-75868153 | None:intergenic | 25.0% |
| ! | TTATATCAGGAACTGAAATA+TGG | + | chr3.4:75868135-75868154 | None:intergenic | 25.0% |
| !! | TGATATAAGATACATTGACT+GGG | - | chr3.4:75868147-75868166 | MS.gene69887:intron | 25.0% |
| !! | TTTGGTAAAAGTGTAGTTAA+AGG | - | chr3.4:75869065-75869084 | MS.gene69887:CDS | 25.0% |
| !!! | CAAGTGAGAAGTATTTAATA+AGG | + | chr3.4:75867892-75867911 | None:intergenic | 25.0% |
| !!! | GAAGAAATTGAAAAGCATTT+TGG | - | chr3.4:75868698-75868717 | MS.gene69887:CDS | 25.0% |
| !!! | TATGTAGTTTGATTTGATTC+AGG | - | chr3.4:75868790-75868809 | MS.gene69887:CDS | 25.0% |
| !!! | TTCAAACTTGTTCTGAAATT+TGG | - | chr3.4:75868349-75868368 | MS.gene69887:intron | 25.0% |
| ATACTTTGTATGTATACTGC+AGG | - | chr3.4:75868650-75868669 | MS.gene69887:intron | 30.0% | |
| ATATCAGGAACTGAAATATG+GGG | + | chr3.4:75868133-75868152 | None:intergenic | 30.0% | |
| CAAACCTGCTTAACAATAAA+TGG | + | chr3.4:75868937-75868956 | None:intergenic | 30.0% | |
| CAGTCAATGTATCTTATATC+AGG | + | chr3.4:75868148-75868167 | None:intergenic | 30.0% | |
| CTGATATAAGATACATTGAC+TGG | - | chr3.4:75868146-75868165 | MS.gene69887:intron | 30.0% | |
| GAAAGTTGTAAATCAGAGTT+TGG | - | chr3.4:75868274-75868293 | MS.gene69887:CDS | 30.0% | |
| TAGGATTGTGAAAATTCTGA+GGG | - | chr3.4:75868602-75868621 | MS.gene69887:intron | 30.0% | |
| ! | AGAATGTTTAGAGTGAAGTT+TGG | - | chr3.4:75869047-75869066 | MS.gene69887:CDS | 30.0% |
| ! | TCTTCATTGTTGTTGTAATC+AGG | - | chr3.4:75868411-75868430 | MS.gene69887:intron | 30.0% |
| ! | TTTGTCGTTCTGATTTGAAT+TGG | + | chr3.4:75867861-75867880 | None:intergenic | 30.0% |
| AACATCAACTAGACAGACAA+AGG | - | chr3.4:75867963-75867982 | MS.gene69887:intron | 35.0% | |
| AACCATAAATATTCGGATGC+AGG | - | chr3.4:75868822-75868841 | MS.gene69887:CDS | 35.0% | |
| ACATCAACTAGACAGACAAA+GGG | - | chr3.4:75867964-75867983 | MS.gene69887:intron | 35.0% | |
| ATAAATATTCGGATGCAGGT+GGG | - | chr3.4:75868826-75868845 | MS.gene69887:CDS | 35.0% | |
| ATTGTTTATGGCAATCGGAA+TGG | - | chr3.4:75868868-75868887 | MS.gene69887:CDS | 35.0% | |
| CATAAACAATGTCAGTGAAG+GGG | + | chr3.4:75868858-75868877 | None:intergenic | 35.0% | |
| CCATAAACAATGTCAGTGAA+GGG | + | chr3.4:75868859-75868878 | None:intergenic | 35.0% | |
| CTACGTAGAAAGGGATTTAA+GGG | - | chr3.4:75868175-75868194 | MS.gene69887:intron | 35.0% | |
| CTAGGATTGTGAAAATTCTG+AGG | - | chr3.4:75868601-75868620 | MS.gene69887:intron | 35.0% | |
| CTGACATTGTTTATGGCAAT+CGG | - | chr3.4:75868863-75868882 | MS.gene69887:CDS | 35.0% | |
| GTTTCAATGATCGTGATGAT+AGG | - | chr3.4:75869199-75869218 | MS.gene69887:CDS | 35.0% | |
| TCTACGTAGAAAGGGATTTA+AGG | - | chr3.4:75868174-75868193 | MS.gene69887:intron | 35.0% | |
| TTGTTTATGGCAATCGGAAT+GGG | - | chr3.4:75868869-75868888 | MS.gene69887:CDS | 35.0% | |
| ! | ACTTTTCACTAAGATGTGGT+GGG | - | chr3.4:75868015-75868034 | MS.gene69887:intron | 35.0% |
| ! | AGGAATCTTGAGAGTACAAT+TGG | - | chr3.4:75868468-75868487 | MS.gene69887:intron | 35.0% |
| ! | GGAATGGGTTTCTAACTATT+TGG | - | chr3.4:75868884-75868903 | MS.gene69887:CDS | 35.0% |
| ! | TGAAGCATCAGAGTTAATCA+TGG | - | chr3.4:75868724-75868743 | MS.gene69887:CDS | 35.0% |
| !! | TAAAGTACTGGTCTAGAAGA+GGG | - | chr3.4:75869246-75869265 | MS.gene69887:CDS | 35.0% |
| !!! | GGTTTCTGGATTTTGATTAC+TGG | + | chr3.4:75867930-75867949 | None:intergenic | 35.0% |
| AAGGGCTAGAAAGCAATTAC+AGG | - | chr3.4:75867822-75867841 | MS.gene69887:intron | 40.0% | |
| AATGATCGTGATGATAGGTG+AGG | - | chr3.4:75869204-75869223 | MS.gene69887:CDS | 40.0% | |
| AGACACAGAGTTGCAACAAA+GGG | - | chr3.4:75867804-75867823 | MS.gene69887:intron | 40.0% | |
| AGACAGACAAAGGGAATTCA+AGG | - | chr3.4:75867973-75867992 | MS.gene69887:intron | 40.0% | |
| CACCTGCATCCGAATATTTA+TGG | + | chr3.4:75868827-75868846 | None:intergenic | 40.0% | |
| CATAAATATTCGGATGCAGG+TGG | - | chr3.4:75868825-75868844 | MS.gene69887:CDS | 40.0% | |
| CCCTTCACTGACATTGTTTA+TGG | - | chr3.4:75868856-75868875 | MS.gene69887:CDS | 40.0% | |
| CTTTCCAATGAAGACTCAAG+TGG | + | chr3.4:75868259-75868278 | None:intergenic | 40.0% | |
| GACCATAGAAGTTTCTCAGA+GGG | + | chr3.4:75867772-75867791 | None:intergenic | 40.0% | |
| GCCATAAACAATGTCAGTGA+AGG | + | chr3.4:75868860-75868879 | None:intergenic | 40.0% | |
| GCTGTATTTAGTAACTCAGC+TGG | - | chr3.4:75868307-75868326 | MS.gene69887:intron | 40.0% | |
| GGAGCCATTTATTGTTAAGC+AGG | - | chr3.4:75868930-75868949 | MS.gene69887:CDS | 40.0% | |
| GGCCAAAGAATCAACTTTGA+GGG | - | chr3.4:75868058-75868077 | MS.gene69887:CDS | 40.0% | |
| GGGCATTCTATGTTCAACTA+TGG | - | chr3.4:75868078-75868097 | MS.gene69887:CDS | 40.0% | |
| TGGCCAAAGAATCAACTTTG+AGG | - | chr3.4:75868057-75868076 | MS.gene69887:CDS | 40.0% | |
| ! | ATATGGGGCAGTGACAATTT+TGG | + | chr3.4:75868118-75868137 | None:intergenic | 40.0% |
| ! | CACTTTTCACTAAGATGTGG+TGG | - | chr3.4:75868014-75868033 | MS.gene69887:intron | 40.0% |
| ! | GGTGAGTTTTCTCTTTCGTT+GGG | + | chr3.4:75867717-75867736 | None:intergenic | 40.0% |
| ! | GTGCACTTTTCACTAAGATG+TGG | - | chr3.4:75868011-75868030 | MS.gene69887:intron | 40.0% |
| ! | TATGGGGCAGTGACAATTTT+GGG | + | chr3.4:75868117-75868136 | None:intergenic | 40.0% |
| ! | TGCCCTCAAAGTTGATTCTT+TGG | + | chr3.4:75868063-75868082 | None:intergenic | 40.0% |
| ! | TGGTGAGTTTTCTCTTTCGT+TGG | + | chr3.4:75867718-75867737 | None:intergenic | 40.0% |
| ! | TGTCTAGTTGATGTTGACTG+TGG | + | chr3.4:75867958-75867977 | None:intergenic | 40.0% |
| ! | TTGACACAATGTCTAGGATC+TGG | + | chr3.4:75869299-75869318 | None:intergenic | 40.0% |
| ! | TTGATGTTGACTGTGGTTTC+TGG | + | chr3.4:75867951-75867970 | None:intergenic | 40.0% |
| !! | GTAAAGTACTGGTCTAGAAG+AGG | - | chr3.4:75869245-75869264 | MS.gene69887:CDS | 40.0% |
| !!! | TGAGTGGTGCTTTTTCTGTA+TGG | - | chr3.4:75868512-75868531 | MS.gene69887:CDS | 40.0% |
| AAGTCATCAGACACAGTGAG+TGG | - | chr3.4:75868496-75868515 | MS.gene69887:CDS | 45.0% | |
| ACCATGATGGTTCAAAAGCG+AGG | - | chr3.4:75868448-75868467 | MS.gene69887:intron | 45.0% | |
| AGAAGTTTCTCAGAGGGACT+TGG | + | chr3.4:75867766-75867785 | None:intergenic | 45.0% | |
| CAGACACAGAGTTGCAACAA+AGG | - | chr3.4:75867803-75867822 | MS.gene69887:intron | 45.0% | |
| CTTCGTGAGTATGACCATGA+TGG | - | chr3.4:75868435-75868454 | MS.gene69887:intron | 45.0% | |
| GGACCATAGAAGTTTCTCAG+AGG | + | chr3.4:75867773-75867792 | None:intergenic | 45.0% | |
| GGCTCTTTGACACAATGTCT+AGG | + | chr3.4:75869305-75869324 | None:intergenic | 45.0% | |
| TACCCTACTCTTTAACGCTC+TGG | - | chr3.4:75868230-75868249 | MS.gene69887:intron | 45.0% | |
| TAGGATCTGGCAATAGCTTC+TGG | + | chr3.4:75869286-75869305 | None:intergenic | 45.0% | |
| TCCAATGAAGACTCAAGTGG+AGG | + | chr3.4:75868256-75868275 | None:intergenic | 45.0% | |
| TTGTTGCAACTCTGTGTCTG+AGG | + | chr3.4:75867803-75867822 | None:intergenic | 45.0% | |
| ! | CATGATGATGTCTGGGAATG+TGG | + | chr3.4:75867694-75867713 | None:intergenic | 45.0% |
| ! | GTCCCTCTGAGAAACTTCTA+TGG | - | chr3.4:75867767-75867786 | MS.gene69887:intron | 45.0% |
| ! | TGCATTGGCAAGTGATAGAG+TGG | + | chr3.4:75867738-75867757 | None:intergenic | 45.0% |
| !! | TCCTCGCTTTTGAACCATCA+TGG | + | chr3.4:75868452-75868471 | None:intergenic | 45.0% |
| !! | TGACTGTGGTTTCTGGTTTC+TGG | + | chr3.4:75867944-75867963 | None:intergenic | 45.0% |
| AGAGCCATTGAGTCTTGCAG+AGG | - | chr3.4:75868909-75868928 | MS.gene69887:CDS | 50.0% | |
| AGGGACTTGGCTATCTGCAT+TGG | + | chr3.4:75867753-75867772 | None:intergenic | 50.0% | |
| ATTTCTTCAGCTGTGCCACC+TGG | + | chr3.4:75868686-75868705 | None:intergenic | 50.0% | |
| CTCTGTGTCTGAGGAAGACT+TGG | + | chr3.4:75867794-75867813 | None:intergenic | 50.0% | |
| GCAGATGTGAAAGCGGCATT+TGG | - | chr3.4:75868037-75868056 | MS.gene69887:CDS | 50.0% | |
| GCCTCCACTTGAGTCTTCAT+TGG | - | chr3.4:75868252-75868271 | MS.gene69887:CDS | 50.0% | |
| GGAATGTGGTACGAGCAACT+GGG | + | chr3.4:75867680-75867699 | None:intergenic | 50.0% | |
| GGCAATAGCTTCTGGTCAAG+TGG | + | chr3.4:75869278-75869297 | None:intergenic | 50.0% | |
| TGGGCTGCTCTACGTAGAAA+GGG | - | chr3.4:75868166-75868185 | MS.gene69887:intron | 50.0% | |
| ! | AGGCCAGAGCGTTAAAGAGT+AGG | + | chr3.4:75868236-75868255 | None:intergenic | 50.0% |
| ! | CGTTGGGCATGATGATGTCT+GGG | + | chr3.4:75867701-75867720 | None:intergenic | 50.0% |
| ! | GGCCAGAGCGTTAAAGAGTA+GGG | + | chr3.4:75868235-75868254 | None:intergenic | 50.0% |
| ! | TCGTTGGGCATGATGATGTC+TGG | + | chr3.4:75867702-75867721 | None:intergenic | 50.0% |
| ACTGCAGGAGTGAAGAAGCC+AGG | - | chr3.4:75868665-75868684 | MS.gene69887:CDS | 55.0% | |
| CTGGGCTGCTCTACGTAGAA+AGG | - | chr3.4:75868165-75868184 | MS.gene69887:intron | 55.0% | |
| GGCTCCTCTGCAAGACTCAA+TGG | + | chr3.4:75868916-75868935 | None:intergenic | 55.0% | |
| GGGAATGTGGTACGAGCAAC+TGG | + | chr3.4:75867681-75867700 | None:intergenic | 55.0% | |
| !! | GTGGTGGGCAGATGTGAAAG+CGG | - | chr3.4:75868030-75868049 | MS.gene69887:intron | 55.0% |
| GCAGGAGTGAAGAAGCCAGG+TGG | - | chr3.4:75868668-75868687 | MS.gene69887:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 75867647 | 75869337 | 75867647 | ID=MS.gene69887 |
| chr3.4 | mRNA | 75867647 | 75869337 | 75867647 | ID=MS.gene69887.t1;Parent=MS.gene69887 |
| chr3.4 | exon | 75868656 | 75869337 | 75868656 | ID=MS.gene69887.t1.exon1;Parent=MS.gene69887.t1 |
| chr3.4 | CDS | 75868656 | 75869337 | 75868656 | ID=cds.MS.gene69887.t1;Parent=MS.gene69887.t1 |
| chr3.4 | exon | 75868474 | 75868551 | 75868474 | ID=MS.gene69887.t1.exon2;Parent=MS.gene69887.t1 |
| chr3.4 | CDS | 75868474 | 75868551 | 75868474 | ID=cds.MS.gene69887.t1;Parent=MS.gene69887.t1 |
| chr3.4 | exon | 75868239 | 75868312 | 75868239 | ID=MS.gene69887.t1.exon3;Parent=MS.gene69887.t1 |
| chr3.4 | CDS | 75868239 | 75868312 | 75868239 | ID=cds.MS.gene69887.t1;Parent=MS.gene69887.t1 |
| chr3.4 | exon | 75868033 | 75868140 | 75868033 | ID=MS.gene69887.t1.exon4;Parent=MS.gene69887.t1 |
| chr3.4 | CDS | 75868033 | 75868140 | 75868033 | ID=cds.MS.gene69887.t1;Parent=MS.gene69887.t1 |
| chr3.4 | exon | 75867647 | 75867763 | 75867647 | ID=MS.gene69887.t1.exon5;Parent=MS.gene69887.t1 |
| chr3.4 | CDS | 75867647 | 75867763 | 75867647 | ID=cds.MS.gene69887.t1;Parent=MS.gene69887.t1 |
| Gene Sequence |
| Protein sequence |
