AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056612


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056612.t1 MTR_4g068280 92.908 141 9 1 1 140 1 141 1.16e-89 260
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 35 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTTCAGCTGTTAATTC+AGG 0.240777 4.3:-36722209 MS.gene056612:intron
CCTGAATTAACAGCTGAAAT+TGG 0.305151 4.3:+36722209 None:intergenic
CACTCCTAGTGTAATGGAAT+TGG 0.327298 4.3:+36722450 None:intergenic
AGTGCTCTTGATTTAGCATT+TGG 0.344427 4.3:+36722406 None:intergenic
CCTGGATTTCGCATGCAAAA+AGG 0.372253 4.3:-36721347 MS.gene056612:CDS
ACTTCCTTCTACAGATGCTT+GGG 0.399626 4.3:-36719775 MS.gene056612:CDS
CTTCCCCAAGCATCTGTAGA+AGG 0.423340 4.3:+36719771 None:intergenic
ATCTGTAGAAGGAAGTCTTT+CGG 0.427957 4.3:+36719782 None:intergenic
GACTTCCTTCTACAGATGCT+TGG 0.439445 4.3:-36719776 MS.gene056612:CDS
TGTATCTTATTATCATCTCC+TGG 0.439751 4.3:+36722032 None:intergenic
CGCACGGCCCCACCAGTGCC+TGG 0.444031 4.3:-36721365 MS.gene056612:CDS
TAAGAATGCTGAAATATCAT+TGG 0.446744 4.3:+36722079 None:intergenic
CTCTGTCTCCATGGAGAAGA+AGG 0.465388 4.3:-36722369 MS.gene056612:intron
TTTCTCTGTCTCTGTCTCCA+TGG 0.467641 4.3:-36722378 MS.gene056612:CDS
GTTTGGTACCTTCTTCTCCA+TGG 0.477856 4.3:+36722361 None:intergenic
TGCATGCGAAATCCAGGCAC+TGG 0.488521 4.3:+36721353 None:intergenic
AACTCTCACTCCTAGTGTAA+TGG 0.494044 4.3:+36722444 None:intergenic
GACCGGATTCTTATAAACTT+AGG 0.501149 4.3:-36721389 MS.gene056612:CDS
TGCGAAATCCAGGCACTGGT+GGG 0.515069 4.3:+36721357 None:intergenic
GGCCTAAGTTTATAAGAATC+CGG 0.516111 4.3:+36721387 None:intergenic
GCCACTGTAGTTGCAGAACC+AGG 0.531242 4.3:-36722050 MS.gene056612:CDS
TAGTGTAATGGAATTGGAGT+TGG 0.540616 4.3:+36722456 None:intergenic
GATAGTCTCTCTACTTCCAA+TGG 0.546713 4.3:-36722257 MS.gene056612:CDS
GTTTAAATGGCAGTTAAGAG+TGG 0.573603 4.3:-36721444 MS.gene056612:intron
GACTGGTGTTCAAACACAGA+AGG 0.574204 4.3:-36721417 MS.gene056612:CDS
ATGTCTGAGAGTTGTTCCAT+TGG 0.575900 4.3:+36722241 None:intergenic
CAGTTAAGAGTGGACTTGAC+TGG 0.592282 4.3:-36721434 MS.gene056612:CDS
ATGCGAAATCCAGGCACTGG+TGG 0.601200 4.3:+36721356 None:intergenic
TGCTCCAGGGAAATCATCAA+AGG 0.608014 4.3:-36720125 MS.gene056612:intron
CTTCCTTCTACAGATGCTTG+GGG 0.611133 4.3:-36719774 MS.gene056612:CDS
CAGGCACTGGTGGGGCCGTG+CGG 0.635258 4.3:+36721366 None:intergenic
TCTTATAAACTTAGGCCGCA+CGG 0.635605 4.3:-36721381 MS.gene056612:CDS
AACTCCAATTCCATTACACT+AGG 0.641122 4.3:-36722454 MS.gene056612:CDS
GCGAAATCCAGGCACTGGTG+GGG 0.648008 4.3:+36721358 None:intergenic
TCCTGGTTCTGCAACTACAG+TGG 0.653749 4.3:+36722049 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAAATAAAAATAT+TGG + chr4.3:36722144-36722163 None:intergenic 0.0%
!! AAAAGATACATAATAAATAA+AGG + chr4.3:36720052-36720071 None:intergenic 10.0%
!!! AAAATATTTTACATGATAAA+AGG + chr4.3:36720672-36720691 None:intergenic 10.0%
!!! TTTTGATACTTAATTATAAT+TGG - chr4.3:36721133-36721152 MS.gene056612:intron 10.0%
!! AAGAATGAATGAATAATTTA+TGG + chr4.3:36722202-36722221 None:intergenic 15.0%
!! AAGTAATTAAGTTAAAATTC+AGG + chr4.3:36722063-36722082 None:intergenic 15.0%
!! AGTAATTAAGTTAAAATTCA+GGG + chr4.3:36722062-36722081 None:intergenic 15.0%
!! ATATATATTATCATGATTCA+TGG + chr4.3:36722358-36722377 None:intergenic 15.0%
!!! TAAAATATTTTTCTGAAGAA+TGG - chr4.3:36720681-36720700 MS.gene056612:intron 15.0%
!!! TATTTATTATGTATCTTTTG+AGG - chr4.3:36720053-36720072 MS.gene056612:intron 15.0%
!!! TTTTGTTAATAATCTTACAT+CGG - chr4.3:36720386-36720405 MS.gene056612:intron 15.0%
!! GACAAATAACAAGTTTATAT+AGG + chr4.3:36721956-36721975 None:intergenic 20.0%
!! TTTAAAGATAGATATCAAAG+AGG + chr4.3:36721348-36721367 None:intergenic 20.0%
!! TTTACATTGGAATCAATTTA+TGG + chr4.3:36720243-36720262 None:intergenic 20.0%
!! TTTACTTTACAATTACAAGT+TGG - chr4.3:36720432-36720451 MS.gene056612:intron 20.0%
!!! ATATTTTACATGATAAAAGG+AGG + chr4.3:36720669-36720688 None:intergenic 20.0%
! AAATACAGGAAGTGATAAAA+TGG + chr4.3:36721736-36721755 None:intergenic 25.0%
! AATAACAAGTTTATATAGGC+AGG + chr4.3:36721952-36721971 None:intergenic 25.0%
! AATACAGGAAGTGATAAAAT+GGG + chr4.3:36721735-36721754 None:intergenic 25.0%
! AATGAATAAGTGAAGTAGTT+TGG + chr4.3:36719892-36719911 None:intergenic 25.0%
! ATAACAAGTTTATATAGGCA+GGG + chr4.3:36721951-36721970 None:intergenic 25.0%
! ATTATAATTGGTATTAGAGC+TGG - chr4.3:36721145-36721164 MS.gene056612:intron 25.0%
! CAAATGATAATTACATTGAG+AGG - chr4.3:36721925-36721944 MS.gene056612:intron 25.0%
! CTTCAAACATAAACAAATTG+TGG - chr4.3:36720598-36720617 MS.gene056612:intron 25.0%
! GCAAAGTATGAATCATAAAA+GGG + chr4.3:36720969-36720988 None:intergenic 25.0%
! TAAGAATGCTGAAATATCAT+TGG + chr4.3:36720157-36720176 None:intergenic 25.0%
! TGAGATAAAACTTAATCTCA+GGG + chr4.3:36722277-36722296 None:intergenic 25.0%
! TGCAAAGTATGAATCATAAA+AGG + chr4.3:36720970-36720989 None:intergenic 25.0%
! TTGAGATAAAACTTAATCTC+AGG + chr4.3:36722278-36722297 None:intergenic 25.0%
! TTGTAATCTTGTGGTTTAAA+TGG - chr4.3:36720776-36720795 MS.gene056612:intron 25.0%
! TTTCATTTCCTTTCATTTAC+TGG + chr4.3:36721887-36721906 None:intergenic 25.0%
!! ATTTTATCACTTCCTGTATT+TGG - chr4.3:36721735-36721754 MS.gene056612:intron 25.0%
!! TGTATTTTCTTGATCATCAA+AGG - chr4.3:36721621-36721640 MS.gene056612:intron 25.0%
!!! TTTACTGGTTTTCTCATAAT+TGG + chr4.3:36721872-36721891 None:intergenic 25.0%
!!! TTTTTTCACTAACCAAATAC+AGG + chr4.3:36721750-36721769 None:intergenic 25.0%
AAGTGTTTCCTTGATATTCA+TGG - chr4.3:36721658-36721677 MS.gene056612:intron 30.0%
AATTCTGAACTATGATGAAC+AGG + chr4.3:36722016-36722035 None:intergenic 30.0%
ACTTTATAAGCTCCATTTGT+TGG - chr4.3:36721517-36721536 MS.gene056612:intron 30.0%
AGAAACAAATTAAATCCCAC+AGG + chr4.3:36720350-36720369 None:intergenic 30.0%
ATCAATCAACTTGATGAACT+AGG - chr4.3:36720278-36720297 MS.gene056612:intron 30.0%
ATTCATTGCTAGATTGTGAT+AGG - chr4.3:36721020-36721039 MS.gene056612:intron 30.0%
GAAACAAATTAAATCCCACA+GGG + chr4.3:36720349-36720368 None:intergenic 30.0%
TGAGAAAACCAGTAAATGAA+AGG - chr4.3:36721876-36721895 MS.gene056612:intron 30.0%
TGTATCTTATTATCATCTCC+TGG + chr4.3:36720204-36720223 None:intergenic 30.0%
TTCATTGCTAGATTGTGATA+GGG - chr4.3:36721021-36721040 MS.gene056612:intron 30.0%
TTTCACAGAAAAATGGTCAT+CGG + chr4.3:36721486-36721505 None:intergenic 30.0%
! AGAAACACACACTTTTACAT+TGG + chr4.3:36720256-36720275 None:intergenic 30.0%
! AGGATAAGGGTTTTTAAATG+GGG + chr4.3:36721409-36721428 None:intergenic 30.0%
! AGTTTTCATGCCCAATTAAT+CGG - chr4.3:36720320-36720339 MS.gene056612:intron 30.0%
! GAGGATAAGGGTTTTTAAAT+GGG + chr4.3:36721410-36721429 None:intergenic 30.0%
! GCTCTTATTTCACAGAAAAA+TGG + chr4.3:36721493-36721512 None:intergenic 30.0%
! TGAGGATAAGGGTTTTTAAA+TGG + chr4.3:36721411-36721430 None:intergenic 30.0%
! TGTAAAGTAAACACGTTTTC+AGG + chr4.3:36720423-36720442 None:intergenic 30.0%
! TTGTTTATGTTTGAAGCTAC+AGG + chr4.3:36720594-36720613 None:intergenic 30.0%
! TTTTACATGATAAAAGGAGG+AGG + chr4.3:36720666-36720685 None:intergenic 30.0%
!! ACTTGTTATTTGTCTCTTGT+TGG - chr4.3:36721962-36721981 MS.gene056612:intron 30.0%
!! GGATTGATTTTGTAATCTTG+TGG - chr4.3:36720767-36720786 MS.gene056612:intron 30.0%
!! TTAGCTTGTGTTCTTTACAA+AGG - chr4.3:36721695-36721714 MS.gene056612:intron 30.0%
!! TTTTTAGTGTGTCTAGAATG+TGG + chr4.3:36721463-36721482 None:intergenic 30.0%
!!! ATTACAAGTTGGTTTTGTAG+AGG - chr4.3:36720443-36720462 MS.gene056612:intron 30.0%
!!! GATAGCTAGGTTTTAAAAGA+GGG - chr4.3:36721099-36721118 MS.gene056612:intron 30.0%
!!! TGATAGCTAGGTTTTAAAAG+AGG - chr4.3:36721098-36721117 MS.gene056612:intron 30.0%
AAACAAAAGTTCTCACAACG+TGG + chr4.3:36720485-36720504 None:intergenic 35.0%
AACAAAAGTTCTCACAACGT+GGG + chr4.3:36720484-36720503 None:intergenic 35.0%
AACTCCAATTCCATTACACT+AGG - chr4.3:36719779-36719798 MS.gene056612:CDS 35.0%
AATACATGATGCAAATGCGA+AGG + chr4.3:36721607-36721626 None:intergenic 35.0%
AGGCTAAAGGGAAAATAACA+AGG + chr4.3:36720646-36720665 None:intergenic 35.0%
AGTGAAAAAATCCACCTTGT+GGG - chr4.3:36721760-36721779 MS.gene056612:intron 35.0%
AGTGCTCTTGATTTAGCATT+TGG + chr4.3:36719830-36719849 None:intergenic 35.0%
ATAGGGATTTGCGTATTATG+AGG - chr4.3:36721038-36721057 MS.gene056612:intron 35.0%
ATCTGTAGAAGGAAGTCTTT+CGG + chr4.3:36722454-36722473 None:intergenic 35.0%
CCAAAAAATTGAGAAGTTGC+AGG + chr4.3:36721574-36721593 None:intergenic 35.0%
CCAATTTCAGCTGTTAATTC+AGG - chr4.3:36720024-36720043 MS.gene056612:intron 35.0%
CCTGAATTAACAGCTGAAAT+TGG + chr4.3:36720027-36720046 None:intergenic 35.0%
GAACAAGACCATGAATATCA+AGG + chr4.3:36721669-36721688 None:intergenic 35.0%
GACCGGATTCTTATAAACTT+AGG - chr4.3:36720844-36720863 MS.gene056612:intron 35.0%
GGCCTAAGTTTATAAGAATC+CGG + chr4.3:36720849-36720868 None:intergenic 35.0%
GTTTAAATGGCAGTTAAGAG+TGG - chr4.3:36720789-36720808 MS.gene056612:intron 35.0%
TAGTGAAAAAATCCACCTTG+TGG - chr4.3:36721759-36721778 MS.gene056612:intron 35.0%
TATTAGAGCTGGTTATCTAG+TGG - chr4.3:36721156-36721175 MS.gene056612:intron 35.0%
TCATAATTGGACTGCATATC+TGG + chr4.3:36721859-36721878 None:intergenic 35.0%
TCTTTACAAAGGAAAGACCT+TGG - chr4.3:36721706-36721725 MS.gene056612:intron 35.0%
TGGAATCAATTTATGGTGCA+TGG + chr4.3:36720236-36720255 None:intergenic 35.0%
TTCTCAAACTACATCAAGCA+AGG + chr4.3:36719923-36719942 None:intergenic 35.0%
TTTAACAGAGAAATCCCACA+AGG + chr4.3:36721777-36721796 None:intergenic 35.0%
TTTCTTGATCATCAAAGGCT+TGG - chr4.3:36721626-36721645 MS.gene056612:intron 35.0%
! AAACACAGAAGGTTTTTGAC+CGG - chr4.3:36720827-36720846 MS.gene056612:intron 35.0%
! ACTAGTTCTTCTTGCTTTGT+AGG - chr4.3:36720108-36720127 MS.gene056612:intron 35.0%
! TAGTGTAATGGAATTGGAGT+TGG + chr4.3:36719780-36719799 None:intergenic 35.0%
! TCGTTGAAGTTGACTTTGTT+AGG - chr4.3:36722413-36722432 MS.gene056612:CDS 35.0%
!! GATATTCATGGTCTTGTTCT+TGG - chr4.3:36721670-36721689 MS.gene056612:intron 35.0%
!! GCATTGATGTTTTGTAACGA+GGG + chr4.3:36721552-36721571 None:intergenic 35.0%
!!! CCTGCAACTTCTCAATTTTT+TGG - chr4.3:36721571-36721590 MS.gene056612:intron 35.0%
AAATCAATCCCCTAAACAGC+AGG + chr4.3:36720757-36720776 None:intergenic 40.0%
AACTCTCACTCCTAGTGTAA+TGG + chr4.3:36719792-36719811 None:intergenic 40.0%
AATCAATCCCCTAAACAGCA+GGG + chr4.3:36720756-36720775 None:intergenic 40.0%
ACTTCCTTCTACAGATGCTT+GGG - chr4.3:36722458-36722477 MS.gene056612:CDS 40.0%
AGTGATAAAATGGGCATCCA+AGG + chr4.3:36721726-36721745 None:intergenic 40.0%
ATGTCTGAGAGTTGTTCCAT+TGG + chr4.3:36719995-36720014 None:intergenic 40.0%
CAAGCAACTCTTGAGGATAA+GGG + chr4.3:36721422-36721441 None:intergenic 40.0%
GATAAAAGGAGGAGGCTAAA+GGG + chr4.3:36720658-36720677 None:intergenic 40.0%
GATAGTCTCTCTACTTCCAA+TGG - chr4.3:36719976-36719995 MS.gene056612:intron 40.0%
GGGATTTCTCTGTTAAACCT+TGG - chr4.3:36721780-36721799 MS.gene056612:intron 40.0%
TCAAGCAACTCTTGAGGATA+AGG + chr4.3:36721423-36721442 None:intergenic 40.0%
TCTTATAAACTTAGGCCGCA+CGG - chr4.3:36720852-36720871 MS.gene056612:intron 40.0%
TGATAAAAGGAGGAGGCTAA+AGG + chr4.3:36720659-36720678 None:intergenic 40.0%
! CACTCCTAGTGTAATGGAAT+TGG + chr4.3:36719786-36719805 None:intergenic 40.0%
! TAGTGTGTCTAGAATGTGGT+TGG + chr4.3:36721459-36721478 None:intergenic 40.0%
! TTCTTGAACCCTGCTGTTTA+GGG - chr4.3:36720745-36720764 MS.gene056612:intron 40.0%
! TTTCTTGAACCCTGCTGTTT+AGG - chr4.3:36720744-36720763 MS.gene056612:intron 40.0%
!!! GGCATTGATGTTTTGTAACG+AGG + chr4.3:36721553-36721572 None:intergenic 40.0%
AAAGTTCTCACAACGTGGGT+TGG + chr4.3:36720480-36720499 None:intergenic 45.0%
AACAGAGAAATCCCACAAGG+TGG + chr4.3:36721774-36721793 None:intergenic 45.0%
AAGTTCTCACAACGTGGGTT+GGG + chr4.3:36720479-36720498 None:intergenic 45.0%
ACAACTGAGAGTGAAGGAGA+GGG + chr4.3:36721828-36721847 None:intergenic 45.0%
ACAGAGACAACTGAGAGTGA+AGG + chr4.3:36721834-36721853 None:intergenic 45.0%
ACGGTACTAGGATAAGGACT+TGG - chr4.3:36721248-36721267 MS.gene056612:intron 45.0%
CACAGGGAAGCCGATTAATT+GGG + chr4.3:36720333-36720352 None:intergenic 45.0%
CACTACTCGATGTGGTACTT+GGG + chr4.3:36721066-36721085 None:intergenic 45.0%
CCTGGATTTCGCATGCAAAA+AGG - chr4.3:36720886-36720905 MS.gene056612:intron 45.0%
CGAGATGCTTTGTGATAGCT+AGG - chr4.3:36721086-36721105 MS.gene056612:intron 45.0%
CGGTACTAGGATAAGGACTT+GGG - chr4.3:36721249-36721268 MS.gene056612:intron 45.0%
CTTCCTTCTACAGATGCTTG+GGG - chr4.3:36722459-36722478 MS.gene056612:CDS 45.0%
GACTGGTGTTCAAACACAGA+AGG - chr4.3:36720816-36720835 MS.gene056612:intron 45.0%
GACTTCCTTCTACAGATGCT+TGG - chr4.3:36722457-36722476 MS.gene056612:CDS 45.0%
GGATTTCGCATGCAAAAAGG+AGG - chr4.3:36720889-36720908 MS.gene056612:intron 45.0%
GTTTGGTACCTTCTTCTCCA+TGG + chr4.3:36719875-36719894 None:intergenic 45.0%
TCAAGAGTTGCTTGAGCACA+AGG - chr4.3:36721428-36721447 MS.gene056612:CDS 45.0%
TGCTCCAGGGAAATCATCAA+AGG - chr4.3:36722108-36722127 MS.gene056612:intron 45.0%
TGTTATCCTGACTTTGCCAC+TGG - chr4.3:36720556-36720575 MS.gene056612:intron 45.0%
TTGTGCTCAAGCAACTCTTG+AGG + chr4.3:36721429-36721448 None:intergenic 45.0%
TTTCTCTGTCTCTGTCTCCA+TGG - chr4.3:36719855-36719874 MS.gene056612:intron 45.0%
! AAGGGTTTTTAAATGGGGCG+AGG + chr4.3:36721404-36721423 None:intergenic 45.0%
! CAATTAATCGGCTTCCCTGT+GGG - chr4.3:36720332-36720351 MS.gene056612:intron 45.0%
! CAGTTAAGAGTGGACTTGAC+TGG - chr4.3:36720799-36720818 MS.gene056612:intron 45.0%
! CCTTTTTGCATGCGAAATCC+AGG + chr4.3:36720889-36720908 None:intergenic 45.0%
! GTTTGAAGCTACAGGTTGCA+TGG + chr4.3:36720586-36720605 None:intergenic 45.0%
! TCTTGAACCCTGCTGTTTAG+GGG - chr4.3:36720746-36720765 MS.gene056612:intron 45.0%
!! GGTTTTGTAGAGGTTGCGTT+AGG - chr4.3:36720453-36720472 MS.gene056612:intron 45.0%
AGTTCCACGTCGAGTAGCAT+AGG - chr4.3:36721288-36721307 MS.gene056612:intron 50.0%
ATGCTACTCGACGTGGAACT+TGG + chr4.3:36721288-36721307 None:intergenic 50.0%
ATTGTAGAGTGCATCTGCCC+GGG - chr4.3:36721225-36721244 MS.gene056612:intron 50.0%
CAGGTTGCATGGTATACCAG+TGG + chr4.3:36720575-36720594 None:intergenic 50.0%
CATTGTAGAGTGCATCTGCC+CGG - chr4.3:36721224-36721243 MS.gene056612:intron 50.0%
CCACAGGGAAGCCGATTAAT+TGG + chr4.3:36720334-36720353 None:intergenic 50.0%
CGGAAAGGACTACCTACGAA+GGG - chr4.3:36721181-36721200 MS.gene056612:intron 50.0%
CTCTGTCTCCATGGAGAAGA+AGG - chr4.3:36719864-36719883 MS.gene056612:intron 50.0%
CTTCCCCAAGCATCTGTAGA+AGG + chr4.3:36722465-36722484 None:intergenic 50.0%
GAAGGAGAGGGTCAACTTGA+CGG + chr4.3:36721816-36721835 None:intergenic 50.0%
GACAACTGAGAGTGAAGGAG+AGG + chr4.3:36721829-36721848 None:intergenic 50.0%
GAGCTGGTTATCTAGTGGCT+CGG - chr4.3:36721161-36721180 MS.gene056612:intron 50.0%
GCAAATGCGAAGGTCACTTG+TGG + chr4.3:36721597-36721616 None:intergenic 50.0%
GCACTACTCGATGTGGTACT+TGG + chr4.3:36721067-36721086 None:intergenic 50.0%
GGAAAGGACTACCTACGAAG+GGG - chr4.3:36721182-36721201 MS.gene056612:intron 50.0%
GGGCATAAGCAGCCAACAAA+TGG + chr4.3:36721532-36721551 None:intergenic 50.0%
GGTATACCAGTGGCAAAGTC+AGG + chr4.3:36720565-36720584 None:intergenic 50.0%
GGTCAACTTGACGGAGTTTG+AGG + chr4.3:36721807-36721826 None:intergenic 50.0%
GTCGAGTAGCATAGGCTGAT+CGG - chr4.3:36721296-36721315 MS.gene056612:intron 50.0%
TCCTTATCCTAGTACCGTCC+CGG + chr4.3:36721246-36721265 None:intergenic 50.0%
TCGGAAAGGACTACCTACGA+AGG - chr4.3:36721180-36721199 MS.gene056612:intron 50.0%
TTGACGGAGTTTGAGGACCA+AGG + chr4.3:36721800-36721819 None:intergenic 50.0%
! CCAATTAATCGGCTTCCCTG+TGG - chr4.3:36720331-36720350 MS.gene056612:intron 50.0%
! CGCACCTTTGATGATTTCCC+TGG + chr4.3:36722115-36722134 None:intergenic 50.0%
! GGTTATCTAGTGGCTCGGAA+AGG - chr4.3:36721166-36721185 MS.gene056612:intron 50.0%
!! TCCTGGTTCTGCAACTACAG+TGG + chr4.3:36720187-36720206 None:intergenic 50.0%
CCTTATCCTAGTACCGTCCC+GGG + chr4.3:36721245-36721264 None:intergenic 55.0%
GCATCTCGCACTACTCGATG+TGG + chr4.3:36721074-36721093 None:intergenic 55.0%
GCCACTGTAGTTGCAGAACC+AGG - chr4.3:36720183-36720202 MS.gene056612:intron 55.0%
GCGATGTGTGAACTGCTCCA+GGG - chr4.3:36722095-36722114 MS.gene056612:CDS 55.0%
GGAGCAGTTCACACATCGCA+AGG + chr4.3:36722094-36722113 None:intergenic 55.0%
TACCTACGAAGGGGCTGGAA+AGG - chr4.3:36721191-36721210 MS.gene056612:intron 55.0%
TCAGCCTATGCTACTCGACG+TGG + chr4.3:36721295-36721314 None:intergenic 55.0%
TGCATGCGAAATCCAGGCAC+TGG + chr4.3:36720883-36720902 None:intergenic 55.0%
TGCGATGTGTGAACTGCTCC+AGG - chr4.3:36722094-36722113 MS.gene056612:CDS 55.0%
!! ATGCGAAATCCAGGCACTGG+TGG + chr4.3:36720880-36720899 None:intergenic 55.0%
!! TGCGAAATCCAGGCACTGGT+GGG + chr4.3:36720879-36720898 None:intergenic 55.0%
AGCCTTTCCAGCCCCTTCGT+AGG + chr4.3:36721196-36721215 None:intergenic 60.0%
AGGACTACCTACGAAGGGGC+TGG - chr4.3:36721186-36721205 MS.gene056612:intron 60.0%
CCCGGGACGGTACTAGGATA+AGG - chr4.3:36721242-36721261 MS.gene056612:intron 60.0%
TAGAGTGCATCTGCCCGGGA+CGG - chr4.3:36721229-36721248 MS.gene056612:intron 60.0%
!! GCGAAATCCAGGCACTGGTG+GGG + chr4.3:36720878-36720897 None:intergenic 60.0%
CATCTGCCCGGGACGGTACT+AGG - chr4.3:36721236-36721255 MS.gene056612:intron 65.0%
!! CAGGCACTGGTGGGGCCGTG+CGG + chr4.3:36720870-36720889 None:intergenic 75.0%
! CGCACGGCCCCACCAGTGCC+TGG - chr4.3:36720868-36720887 MS.gene056612:intron 80.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 36719758 36722497 36719758 ID=MS.gene056612
chr4.3 mRNA 36719758 36722497 36719758 ID=MS.gene056612.t1;Parent=MS.gene056612
chr4.3 exon 36722370 36722497 36722370 ID=MS.gene056612.t1.exon1;Parent=MS.gene056612.t1
chr4.3 CDS 36722370 36722497 36722370 ID=cds.MS.gene056612.t1;Parent=MS.gene056612.t1
chr4.3 exon 36722210 36722283 36722210 ID=MS.gene056612.t1.exon2;Parent=MS.gene056612.t1
chr4.3 CDS 36722210 36722283 36722210 ID=cds.MS.gene056612.t1;Parent=MS.gene056612.t1
chr4.3 exon 36722031 36722125 36722031 ID=MS.gene056612.t1.exon3;Parent=MS.gene056612.t1
chr4.3 CDS 36722031 36722125 36722031 ID=cds.MS.gene056612.t1;Parent=MS.gene056612.t1
chr4.3 exon 36721345 36721453 36721345 ID=MS.gene056612.t1.exon4;Parent=MS.gene056612.t1
chr4.3 CDS 36721345 36721453 36721345 ID=cds.MS.gene056612.t1;Parent=MS.gene056612.t1
chr4.3 exon 36720126 36720139 36720126 ID=MS.gene056612.t1.exon5;Parent=MS.gene056612.t1
chr4.3 CDS 36720126 36720139 36720126 ID=cds.MS.gene056612.t1;Parent=MS.gene056612.t1
chr4.3 exon 36719758 36719820 36719758 ID=MS.gene056612.t1.exon6;Parent=MS.gene056612.t1
chr4.3 CDS 36719758 36719820 36719758 ID=cds.MS.gene056612.t1;Parent=MS.gene056612.t1
Gene Sequence

>MS.gene056612

ATGTCGATGATTGCTGTCTCCAACTCCAATTCCATTACACTAGGAGTGAGAGTTGCTTCATTCACAACTCCAAATGCTAAATCAAGAGCACTCACTTTTTCTCTGTCTCTGTCTCCATGGAGAAGAAGGTACCAAACTACTTCACTTATTCATTTTACTATTCCTTGCTTGATGTAGTTTGAGAATCATATTTCACTTATGTTTTTGTTTGCAGCTTAGATAGTCTCTCTACTTCCAATGGAACAACTCTCAGACATCTTAATACTCCAATTTCAGCTGTTAATTCAGGTTCCTTTATTTATTATGTATCTTTTGAGGTTTACTATCATTTTCTTCTATATATAATAATCACTAGTTCTTCTTGCTTTGTAGGTTTAGAAGCATCAATTACAGATTCCAATGATATTTCAGCATTCTTAACAGATGCCACTGTAGTTGCAGAACCAGGAGATGATAATAAGATACAAGTGAGTCACCATGCACCATAAATTGATTCCAATGTAAAAGTGTGTGTTTCTTTATCAATCAACTTGATGAACTAGGCTCAATTAAAGCTTTTAGTAGTTTTCATGCCCAATTAATCGGCTTCCCTGTGGGATTTAATTTGTTTCTATCATAATTATGTTATTTTTGTTAATAATCTTACATCGGATGAGATAAAGCCTGAAAACGTGTTTACTTTACAATTACAAGTTGGTTTTGTAGAGGTTGCGTTAGGCCCAACCCACGTTGTGAGAACTTTTGTTTACACAAGCAGATTAGAATTGAAGCTAATGTTGCTATCATGATATGTTTAATTGTTATCCTGACTTTGCCACTGGTATACCATGCAACCTGTAGCTTCAAACATAAACAAATTGTGGCTAGATGTATTGCTATAACAAGCCTTGTTATTTTCCCTTTAGCCTCCTCCTTTTATCATGTAAAATATTTTTCTGAAGAATGGTTCTATAAATTACAGCTTCATGCTAATTTTATGTTTTCATTTTCTTGAACCCTGCTGTTTAGGGGATTGATTTTGTAATCTTGTGGTTTAAATGGCAGTTAAGAGTGGACTTGACTGGTGTTCAAACACAGAAGGTTTTTGACCGGATTCTTATAAACTTAGGCCGCACGGCCCCACCAGTGCCTGGATTTCGCATGCAAAAAGGAGGTAAAAAGTTTCTTTATTAATATATCTAACATTTGTCACATTTTTCACTTTCATACCCTTTTATGATTCATACTTTGCAATACATGCTACGAACACACATGAGCTTGACATTCATTGCTAGATTGTGATAGGGATTTGCGTATTATGAGGTGCCCAAGTACCACATCGAGTAGTGCGAGATGCTTTGTGATAGCTAGGTTTTAAAAGAGGGTTTCACAAGTGTTTTGATACTTAATTATAATTGGTATTAGAGCTGGTTATCTAGTGGCTCGGAAAGGACTACCTACGAAGGGGCTGGAAAGGCTGAGTAAAACATTGTAGAGTGCATCTGCCCGGGACGGTACTAGGATAAGGACTTGGGTTTTATTAAGTTTCCAAGTTCCACGTCGAGTAGCATAGGCTGATCGGTGAAGTACTCAAGTGACTTGATTCTTCCTCTTTGATATCTATCTTTAAAGAAGCATTCAAGTGCTTCGATACTTATCATATTCCTCGCCCCATTTAAAAACCCTTATCCTCAAGAGTTGCTTGAGCACAAGGAATTACCAACCACATTCTAGACACACTAAAAACCGATGACCATTTTTCTGTGAAATAAGAGCAATTACTTTATAAGCTCCATTTGTTGGCTGCTTATGCCCTCGTTACAAAACATCAATGCCTGCAACTTCTCAATTTTTTGGCCACAAGTGACCTTCGCATTTGCATCATGTATTTTCTTGATCATCAAAGGCTTGGTGAAAATAGAAGTGTTTCCTTGATATTCATGGTCTTGTTCTTGGTTTTAGCTTGTGTTCTTTACAAAGGAAAGACCTTGGATGCCCATTTTATCACTTCCTGTATTTGGTTAGTGAAAAAATCCACCTTGTGGGATTTCTCTGTTAAACCTTGGTCCTCAAACTCCGTCAAGTTGACCCTCTCCTTCACTCTCAGTTGTCTCTGTTACCAGATATGCAGTCCAATTATGAGAAAACCAGTAAATGAAAGGAAATGAAACTTTCGTTTTATAATTGACAAATGATAATTACATTGAGAGGCCCTGCCTATATAAACTTGTTATTTGTCTCTTGTTGGTGATATTATCTTACATGTGATTCATTCTCCTGTTCATCATAGTTCAGAATTTCATCAGCATAAGAAATTCAAGTCCCTGAATTTTAACTTAATTACTTTGTACATGCCTTGCGATGTGTGAACTGCTCCAGGGAAATCATCAAAGGTGCGCAATGTCCAATATTTTTATTTTTTTTATTATATTTGATGAATTATTGTTTAGTATTTTTTTGATCCATAAATTATTCATTCATTCTTCTGTAATGTTGTTTGTAACATCAATATCGTTAAAATGTTGTCGTTAAGTCATCCCTGAGATTAAGTTTTATCTCAAAAAAATGCTTTTGACAAAAACAACATTATTTGTGCACTGATGAATGCAACAGAACATCCATGAATCATGATAATATATATGTTTTATTATTTTTTGAAATAATATGTTTGATTCTTCGTTGAAGTTGACTTTGTTAGGAAATCGATGCAGATTCCGAAAGACTTCCTTCTACAGATGCTTGGGGAAGAACGTGTCACTAA

Protein sequence

>MS.gene056612.t1

MSMIAVSNSNSITLGVRVASFTTPNAKSRALTFSLSLSPWRRSLDSLSTSNGTTLRHLNTPISAVNSGLEASITDSNDISAFLTDATVVAEPGDDNKIQLRVDLTGVQTQKVFDRILINLGRTAPPVPGFRMQKGGKSSKEIDADSERLPSTDAWGRTCH