Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69915.t1 | XP_024638010.1 | 97.4 | 939 | 24 | 0 | 1 | 939 | 1 | 939 | 0.00E+00 | 1889 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69915.t1 | Q9FQ04 | 63.7 | 954 | 305 | 12 | 1 | 928 | 1 | 939 | 0.0e+00 | 1190.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69915.t1 | A0A396JT30 | 97.2 | 941 | 24 | 1 | 1 | 939 | 1 | 941 | 0.0e+00 | 1884.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69915 | MS.gene03315 | PPI |
| MS.gene69915 | MS.gene57277 | PPI |
| MS.gene69915 | MS.gene64000 | PPI |
| MS.gene019784 | MS.gene69915 | PPI |
| MS.gene69915 | MS.gene48145 | PPI |
| MS.gene69915 | MS.gene03346 | PPI |
| MS.gene69915 | MS.gene46845 | PPI |
| MS.gene24174 | MS.gene69915 | PPI |
| MS.gene80364 | MS.gene69915 | PPI |
| MS.gene69915 | MS.gene85722 | PPI |
| MS.gene27050 | MS.gene69915 | PPI |
| MS.gene69915 | MS.gene39725 | PPI |
| MS.gene69915 | MS.gene64202 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69915.t1 | MTR_7g114570 | 72.037 | 962 | 239 | 11 | 1 | 939 | 1 | 955 | 0.0 | 1361 |
| MS.gene69915.t1 | MTR_7g114570 | 71.206 | 962 | 236 | 12 | 1 | 939 | 1 | 944 | 0.0 | 1338 |
| MS.gene69915.t1 | MTR_4g051920 | 41.198 | 818 | 312 | 14 | 1 | 737 | 1 | 730 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69915.t1 | AT1G54490 | 63.836 | 954 | 304 | 12 | 1 | 928 | 1 | 939 | 0.0 | 1183 |
| MS.gene69915.t1 | AT1G54490 | 63.122 | 884 | 291 | 11 | 65 | 928 | 13 | 881 | 0.0 | 1077 |
| MS.gene69915.t1 | AT1G75660 | 68.523 | 413 | 123 | 3 | 1 | 406 | 1 | 413 | 0.0 | 556 |
| MS.gene69915.t1 | AT1G75660 | 49.600 | 375 | 165 | 4 | 409 | 761 | 501 | 873 | 3.05e-115 | 378 |
| MS.gene69915.t1 | AT5G42540 | 64.269 | 417 | 134 | 5 | 1 | 406 | 1 | 413 | 1.12e-172 | 529 |
| MS.gene69915.t1 | AT5G42540 | 48.961 | 337 | 164 | 3 | 432 | 760 | 521 | 857 | 8.73e-101 | 338 |
| MS.gene69915.t1 | AT5G42540 | 64.269 | 417 | 134 | 5 | 1 | 406 | 1 | 413 | 1.40e-172 | 529 |
| MS.gene69915.t1 | AT5G42540 | 47.414 | 348 | 164 | 4 | 432 | 760 | 521 | 868 | 6.83e-98 | 331 |
Find 245 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTCCTCAGCTTTAGTTTC+TGG | 0.126708 | 1.4:+66044978 | None:intergenic |
| CCATCGAGGCCGCCAATTTC+TGG | 0.148161 | 1.4:-66039154 | MS.gene69915:CDS |
| TCAGCATATGCAAACCTTTC+TGG | 0.150536 | 1.4:+66040107 | None:intergenic |
| TACCCCTGGTACTAAATTTA+TGG | 0.159962 | 1.4:-66045705 | MS.gene69915:CDS |
| AGGTATTATGTTGAAAATTT+TGG | 0.165045 | 1.4:-66043634 | MS.gene69915:CDS |
| AACCTAGCATTTGCGTTAAT+TGG | 0.176869 | 1.4:+66040472 | None:intergenic |
| AAAACCCAGTCTTCACATTT+TGG | 0.192220 | 1.4:+66039212 | None:intergenic |
| GGAACGTTGCTGATTCATTT+TGG | 0.198460 | 1.4:+66045944 | None:intergenic |
| CAAACCATTTGATCAGCTTA+TGG | 0.199225 | 1.4:-66041642 | MS.gene69915:CDS |
| GTGCTTTAGTATTCCACTTT+AGG | 0.206465 | 1.4:+66039074 | None:intergenic |
| CTCATCAATAAATGGCAATT+TGG | 0.206862 | 1.4:+66041218 | None:intergenic |
| CACAAATCGGGGTTCTAAAT+TGG | 0.228452 | 1.4:+66039123 | None:intergenic |
| AGAACACCCTTAACATTAAA+TGG | 0.238490 | 1.4:-66039474 | MS.gene69915:CDS |
| ACTACACCATCCGGAGGTTT+TGG | 0.243525 | 1.4:+66040135 | None:intergenic |
| TGCTTTAGTATTCCACTTTA+GGG | 0.260712 | 1.4:+66039075 | None:intergenic |
| GATATTTCTTCTTGTGAATA+GGG | 0.264564 | 1.4:+66044937 | None:intergenic |
| AATTTCTTCTCATCAATAAA+TGG | 0.269485 | 1.4:+66041210 | None:intergenic |
| ATGCACTGCCTGACAAATAT+AGG | 0.272218 | 1.4:-66041517 | MS.gene69915:CDS |
| TGAATATTTGCAATATGAAT+TGG | 0.308477 | 1.4:-66044801 | MS.gene69915:CDS |
| AGCAACGTTCCCGGCGGTTC+CGG | 0.309948 | 1.4:-66045932 | MS.gene69915:CDS |
| TTGGTTGTTGGTCCAGAAAT+TGG | 0.315729 | 1.4:+66039142 | None:intergenic |
| TATTATTCCATTTAATGTTA+AGG | 0.315998 | 1.4:+66039467 | None:intergenic |
| CTAGGATACATTCCATTTAC+AGG | 0.321321 | 1.4:+66039052 | None:intergenic |
| AATACTAAAGCACCTGTAAA+TGG | 0.324348 | 1.4:-66039064 | MS.gene69915:CDS |
| TCTGGATATGGAAAATATTC+TGG | 0.324999 | 1.4:-66039376 | MS.gene69915:CDS |
| ATTCACAGTTTCTTAACATC+TGG | 0.326588 | 1.4:-66044832 | MS.gene69915:intron |
| CTTTCTGATTCGAATGTTCC+TGG | 0.326687 | 1.4:-66045420 | MS.gene69915:CDS |
| TACCAGAATCTGGAGTTTCT+TGG | 0.327695 | 1.4:+66038951 | None:intergenic |
| GCAACGTTCCCGGCGGTTCC+GGG | 0.327820 | 1.4:-66045931 | MS.gene69915:CDS |
| TGGACCTGTTCTTGATGCCT+TGG | 0.328821 | 1.4:+66039232 | None:intergenic |
| ATTATTCCATTTAATGTTAA+GGG | 0.331340 | 1.4:+66039468 | None:intergenic |
| AATACTCGACATTGTTTGTA+TGG | 0.331774 | 1.4:-66045333 | MS.gene69915:CDS |
| ATTGTACCGTCTCCCATTGA+TGG | 0.332636 | 1.4:-66040307 | MS.gene69915:CDS |
| TGATATTTCTTCTTGTGAAT+AGG | 0.336331 | 1.4:+66044936 | None:intergenic |
| ACCAGAATCTGGAGTTTCTT+GGG | 0.340136 | 1.4:+66038952 | None:intergenic |
| GTATTTCTGTGCTTCTTTGT+CGG | 0.347913 | 1.4:-66044725 | MS.gene69915:CDS |
| GTGGGATGAATGGATATCTT+TGG | 0.350893 | 1.4:-66040357 | MS.gene69915:CDS |
| TGTCAGCCGTGCACATGATT+TGG | 0.352233 | 1.4:-66040560 | MS.gene69915:CDS |
| AAACCATTTGATCAGCTTAT+GGG | 0.353481 | 1.4:-66041641 | MS.gene69915:CDS |
| CAAGTATCTGGAGCAATAAC+TGG | 0.354247 | 1.4:-66039532 | MS.gene69915:CDS |
| CGGTTACAACGTAACATTCC+TGG | 0.354498 | 1.4:-66045366 | MS.gene69915:CDS |
| GCAATAACTGGATCTCAATT+AGG | 0.356190 | 1.4:-66039520 | MS.gene69915:CDS |
| CCCCAAGAAACTCCAGATTC+TGG | 0.357264 | 1.4:-66038953 | MS.gene69915:CDS |
| ACTTGATTACTCTCGATATC+TGG | 0.357455 | 1.4:+66040280 | None:intergenic |
| AACTCAATTCCGTTGGGATT+GGG | 0.365365 | 1.4:+66048431 | None:intergenic |
| TCAGCTGGACCATCTGGATA+TGG | 0.366429 | 1.4:-66039388 | MS.gene69915:CDS |
| TCTGATAGGTCACAAGTATC+TGG | 0.369819 | 1.4:-66039544 | MS.gene69915:intron |
| TACAAACAATGTCGAGTATT+CGG | 0.370547 | 1.4:+66045336 | None:intergenic |
| AGGCGTCAAGAAGCTGCATC+TGG | 0.374781 | 1.4:-66039031 | MS.gene69915:CDS |
| TTCCAATCAGCTGGACCATC+TGG | 0.376364 | 1.4:-66039394 | MS.gene69915:CDS |
| CATGACAATCAGCTGCAAAA+TGG | 0.376562 | 1.4:+66045006 | None:intergenic |
| TTTCCTCAGCCTTTCCTCTT+CGG | 0.380180 | 1.4:+66045796 | None:intergenic |
| GAGAACACTAACAGTTATTA+TGG | 0.386258 | 1.4:-66039352 | MS.gene69915:CDS |
| TATTCACAAGAAGAAATATC+AGG | 0.390134 | 1.4:-66044934 | MS.gene69915:intron |
| TGCACTGCCTGACAAATATA+GGG | 0.393425 | 1.4:-66041516 | MS.gene69915:CDS |
| CACTATTGATTACCAGAATC+TGG | 0.395476 | 1.4:+66038941 | None:intergenic |
| ATCTCTAATGTTGGCATATG+AGG | 0.396928 | 1.4:+66044689 | None:intergenic |
| ATCCAGATGGTCCAGCTGAT+TGG | 0.402539 | 1.4:+66039392 | None:intergenic |
| AAATGAATCAGCAACGTTCC+CGG | 0.404265 | 1.4:-66045941 | MS.gene69915:CDS |
| AATGGTTTGAATGGCTCTCC+AGG | 0.409476 | 1.4:+66041656 | None:intergenic |
| GAACTCAATTCCGTTGGGAT+TGG | 0.413495 | 1.4:+66048430 | None:intergenic |
| ACCCGAGTTCTGCACAAATC+GGG | 0.418494 | 1.4:+66039111 | None:intergenic |
| TCAATCTCAAAAGGAGGGTT+GGG | 0.418825 | 1.4:+66044773 | None:intergenic |
| GTAGTACAAACCTTGCCATC+AGG | 0.423189 | 1.4:+66048359 | None:intergenic |
| TGAGTTCGATAACTTGTACT+TGG | 0.423822 | 1.4:-66048414 | MS.gene69915:CDS |
| CGGGGTTCTAAATTGGTTGT+TGG | 0.424536 | 1.4:+66039130 | None:intergenic |
| GAAACGAGTTCGAGTTCAAC+AGG | 0.427322 | 1.4:-66044113 | MS.gene69915:intron |
| GACCCGAGTTCTGCACAAAT+CGG | 0.429056 | 1.4:+66039110 | None:intergenic |
| ATTAGCAGTGGTGGGATGAA+TGG | 0.431329 | 1.4:-66040367 | MS.gene69915:intron |
| TCAAACCTTCTCCTGTGCTT+TGG | 0.433255 | 1.4:-66039860 | MS.gene69915:CDS |
| AGCTGATCAAATGGTTTGAA+TGG | 0.434925 | 1.4:+66041647 | None:intergenic |
| TGAGGGAGAACATAAAATAA+TGG | 0.435875 | 1.4:-66045397 | MS.gene69915:CDS |
| AAGCTTCTTTACCTTGCAAC+TGG | 0.436653 | 1.4:-66048181 | MS.gene69915:intron |
| GCATGAAGACAATGTTGGTC+GGG | 0.436656 | 1.4:-66039838 | MS.gene69915:CDS |
| CTGTTTGTTGTATGGCGAAC+TGG | 0.437047 | 1.4:+66039418 | None:intergenic |
| CAGCATATGCAAACCTTTCT+GGG | 0.437101 | 1.4:+66040108 | None:intergenic |
| ATTGGAACCTGTTTGTTGTA+TGG | 0.442068 | 1.4:+66039410 | None:intergenic |
| ATACACCGTTATAATAATAC+TGG | 0.443894 | 1.4:+66042706 | None:intergenic |
| ATTTGCCAGTATTATTATAA+CGG | 0.444027 | 1.4:-66042711 | MS.gene69915:CDS |
| CCAGAAATTGGCGGCCTCGA+TGG | 0.445376 | 1.4:+66039154 | None:intergenic |
| CAGGAATGTTACGTTGTAAC+CGG | 0.445921 | 1.4:+66045367 | None:intergenic |
| ACATTTGAGTCTGAAGTCTC+AGG | 0.445971 | 1.4:+66045731 | None:intergenic |
| CTTCATGAACAGCGGCAGAT+TGG | 0.447850 | 1.4:+66044149 | None:intergenic |
| ACGGTGTATGCTCATGGAAA+TGG | 0.448433 | 1.4:-66042692 | MS.gene69915:intron |
| CAGCTGCAAAATGGCCAGCT+TGG | 0.448881 | 1.4:+66045015 | None:intergenic |
| CAGGTCAAGTTAGGGGAGCC+TGG | 0.451540 | 1.4:-66043667 | MS.gene69915:CDS |
| TAGGCCAAGGCATCAAGAAC+AGG | 0.456757 | 1.4:-66039236 | MS.gene69915:CDS |
| TGGGATGAATGGATATCTTT+GGG | 0.458362 | 1.4:-66040356 | MS.gene69915:CDS |
| GCAAAAGGAGCATAATGATA+CGG | 0.458852 | 1.4:+66041722 | None:intergenic |
| ATCAAATCCCTATATTTGTC+AGG | 0.459480 | 1.4:+66041509 | None:intergenic |
| GTCAATCTCAAAAGGAGGGT+TGG | 0.462823 | 1.4:+66044772 | None:intergenic |
| GATTGAACCACAACCCTGCC+TGG | 0.464174 | 1.4:-66045643 | MS.gene69915:CDS |
| TATCCAGTCTCATCTAATGC+TGG | 0.464794 | 1.4:-66039292 | MS.gene69915:CDS |
| AATATGTGGAAGGCCTTTGT+TGG | 0.470088 | 1.4:-66042734 | MS.gene69915:CDS |
| GATATCTGGCAATCCATCAA+TGG | 0.473490 | 1.4:+66040294 | None:intergenic |
| CAGGTCCAAAATGTGAAGAC+TGG | 0.477422 | 1.4:-66039217 | MS.gene69915:CDS |
| AAAACTTCATCATAAGTAGC+TGG | 0.480642 | 1.4:+66048256 | None:intergenic |
| GGACAGGTAATTACTTTACC+TGG | 0.481240 | 1.4:-66045062 | MS.gene69915:intron |
| GCAAGGTAAAGAAGCTTCCT+TGG | 0.481590 | 1.4:+66048187 | None:intergenic |
| TTCACAGTTTCTTAACATCT+GGG | 0.482384 | 1.4:-66044831 | MS.gene69915:intron |
| CGTTCAAAGTCAATCTCAAA+AGG | 0.482551 | 1.4:+66044764 | None:intergenic |
| GTTAGGGGAGCCTGGATACA+AGG | 0.486533 | 1.4:-66043659 | MS.gene69915:CDS |
| CTCCAGTACGTCCCCTAAAG+TGG | 0.486894 | 1.4:-66039087 | MS.gene69915:CDS |
| ATAAAATAATGGAATACATC+CGG | 0.489514 | 1.4:-66045386 | MS.gene69915:CDS |
| TAATACCTTTCCTTGTATCC+AGG | 0.490409 | 1.4:+66043649 | None:intergenic |
| CAGTTCGCCATACAACAAAC+AGG | 0.491248 | 1.4:-66039417 | MS.gene69915:CDS |
| AGTCTCATCTAATGCTGGGC+AGG | 0.491463 | 1.4:-66039287 | MS.gene69915:CDS |
| CTGTAAATGGAATGTATCCT+AGG | 0.492380 | 1.4:-66039051 | MS.gene69915:CDS |
| TTCCACTTTAGGGGACGTAC+TGG | 0.495067 | 1.4:+66039085 | None:intergenic |
| ATAATGAAGAGATGAGAGCT+AGG | 0.496892 | 1.4:-66043969 | MS.gene69915:CDS |
| CAGATTCTGGTAATCAATAG+TGG | 0.500005 | 1.4:-66038940 | None:intergenic |
| AGGTTCACTTCTCAATATTG+AGG | 0.500834 | 1.4:-66045173 | MS.gene69915:CDS |
| ATATCTGGCAATCCATCAAT+GGG | 0.500898 | 1.4:+66040295 | None:intergenic |
| ACCTCTCTGATCTCTAATGT+TGG | 0.505160 | 1.4:+66044680 | None:intergenic |
| TTGGTCGGGGACAGCAAGGA+AGG | 0.505479 | 1.4:-66039824 | MS.gene69915:CDS |
| GGTTCACTTCTCAATATTGA+GGG | 0.508261 | 1.4:-66045172 | MS.gene69915:CDS |
| GAAGCTTGAAGACACATTAA+CGG | 0.510764 | 1.4:-66041172 | MS.gene69915:intron |
| ACCCCGATTTGTGCAGAACT+CGG | 0.512326 | 1.4:-66039113 | MS.gene69915:CDS |
| ACTGATGCATATATATAGAA+AGG | 0.512680 | 1.4:-66044447 | MS.gene69915:CDS |
| TTGGGTTTAGAAGCGTCGAT+GGG | 0.513119 | 1.4:+66048449 | None:intergenic |
| GGTGGTTATCTTACTTATGC+GGG | 0.513220 | 1.4:-66044410 | MS.gene69915:CDS |
| ATTGGGTTTAGAAGCGTCGA+TGG | 0.513517 | 1.4:+66048448 | None:intergenic |
| CTGAACCTTATCAGAAAATG+AGG | 0.514537 | 1.4:+66043915 | None:intergenic |
| TCGACATTGTTTGTATGGAT+TGG | 0.515703 | 1.4:-66045328 | MS.gene69915:intron |
| GGGATGTGTCCATGTCTACA+AGG | 0.517479 | 1.4:+66040156 | None:intergenic |
| ACAAACAGGTTCCAATCAGC+TGG | 0.518506 | 1.4:-66039403 | MS.gene69915:CDS |
| ATTGGCGGCCTCGATGGTGC+AGG | 0.519830 | 1.4:+66039160 | None:intergenic |
| TTCTTTATCTGCTTATGATG+AGG | 0.520588 | 1.4:+66039001 | None:intergenic |
| GAGATGAGAGCTAGGGCAAG+AGG | 0.521283 | 1.4:-66043961 | MS.gene69915:CDS |
| TGAATAGGGATTTCATCAGC+AGG | 0.521354 | 1.4:+66044951 | None:intergenic |
| GGCGTCAAGAAGCTGCATCT+GGG | 0.521810 | 1.4:-66039030 | MS.gene69915:CDS |
| TTATCGAACTCAATTCCGTT+GGG | 0.522931 | 1.4:+66048425 | None:intergenic |
| TGGAAAACGATTTGCATGGC+AGG | 0.526103 | 1.4:-66041339 | MS.gene69915:intron |
| TTGCCATCAGGGTGAAAACA+AGG | 0.527426 | 1.4:+66048371 | None:intergenic |
| TTATCTTACTTATGCGGGTG+AGG | 0.528053 | 1.4:-66044405 | MS.gene69915:intron |
| TAGAAAGGAATTCACTGCCA+TGG | 0.528597 | 1.4:-66044432 | MS.gene69915:CDS |
| GATTCGAATGTTCCTGGTGA+GGG | 0.530248 | 1.4:-66045414 | MS.gene69915:CDS |
| CTGGGTATCACTACACCATC+CGG | 0.530909 | 1.4:+66040126 | None:intergenic |
| TAATACATCCCACGGAGTGT+TGG | 0.532494 | 1.4:-66039449 | MS.gene69915:CDS |
| GTTATCGAACTCAATTCCGT+TGG | 0.533750 | 1.4:+66048424 | None:intergenic |
| GGAAGAACCTTGAAGCAGGC+AGG | 0.533838 | 1.4:+66041615 | None:intergenic |
| CTCATCTAATGCTGGGCAGG+TGG | 0.534927 | 1.4:-66039284 | MS.gene69915:CDS |
| CAAAAGGAGCATAATGATAC+GGG | 0.536914 | 1.4:+66041723 | None:intergenic |
| ATTATAACGGTGTATGCTCA+TGG | 0.537434 | 1.4:-66042698 | MS.gene69915:CDS |
| TCATGCCAAAGCACAGGAGA+AGG | 0.538530 | 1.4:+66039855 | None:intergenic |
| GATGCAGCTTCTTGACGCCT+AGG | 0.540659 | 1.4:+66039034 | None:intergenic |
| GTTGTTGGTCCAGAAATTGG+CGG | 0.541645 | 1.4:+66039145 | None:intergenic |
| GGCTGCAAAAGATGCAGCTG+AGG | 0.541916 | 1.4:-66045910 | MS.gene69915:CDS |
| AACCATTTGATCAGCTTATG+GGG | 0.542591 | 1.4:-66041640 | MS.gene69915:CDS |
| ATCCAGTCTCATCTAATGCT+GGG | 0.544164 | 1.4:-66039291 | MS.gene69915:CDS |
| GACTCAAATGTCATTACCCC+TGG | 0.547550 | 1.4:-66045719 | MS.gene69915:CDS |
| TCTTTAAGATCAGAAGCAAA+AGG | 0.548870 | 1.4:+66041707 | None:intergenic |
| GGCATGAAGACAATGTTGGT+CGG | 0.549089 | 1.4:-66039839 | MS.gene69915:CDS |
| GGGTGGTTATCTTACTTATG+CGG | 0.549668 | 1.4:-66044411 | MS.gene69915:CDS |
| CACCAATTAACGCAAATGCT+AGG | 0.550066 | 1.4:-66040474 | MS.gene69915:intron |
| CCCCGATTTGTGCAGAACTC+GGG | 0.552399 | 1.4:-66039112 | MS.gene69915:CDS |
| TGATTCGAATGTTCCTGGTG+AGG | 0.556459 | 1.4:-66045415 | MS.gene69915:CDS |
| TAACAATGGAGGAAGGATTG+AGG | 0.557250 | 1.4:-66039183 | MS.gene69915:CDS |
| CCAGAATCTGGAGTTTCTTG+GGG | 0.557442 | 1.4:+66038953 | None:intergenic |
| TACAGGAAGCCGAAGAGGAA+AGG | 0.557457 | 1.4:-66045805 | MS.gene69915:intron |
| ACAAAACACTTATCTTGTCC+AGG | 0.557626 | 1.4:+66045044 | None:intergenic |
| TGCCCAGCATTAGATGAGAC+TGG | 0.557660 | 1.4:+66039289 | None:intergenic |
| AGAAAGGAATTCACTGCCAT+GGG | 0.562929 | 1.4:-66044431 | MS.gene69915:CDS |
| TTAGAACACAAGATAGGCCA+AGG | 0.563818 | 1.4:-66039249 | MS.gene69915:CDS |
| TAGTACAAACCTTGCCATCA+GGG | 0.569197 | 1.4:+66048360 | None:intergenic |
| CGAGTATTCGGATTGAAACC+AGG | 0.572208 | 1.4:+66045348 | None:intergenic |
| ACTACGTCGGAGATCGAGAG+TGG | 0.575023 | 1.4:+66048494 | None:intergenic |
| TGGACACATCCCAAAACCTC+CGG | 0.576106 | 1.4:-66040145 | MS.gene69915:CDS |
| GAGTAATACTTCAAATGCCA+CGG | 0.576974 | 1.4:-66043939 | MS.gene69915:CDS |
| GGTAACGATCGGCAAGCCAC+CGG | 0.580264 | 1.4:+66048516 | None:intergenic |
| TAGAGGAAGAACCTTGAAGC+AGG | 0.581158 | 1.4:+66041611 | None:intergenic |
| TTGTCTTCATGCCAAAGCAC+AGG | 0.582226 | 1.4:+66039849 | None:intergenic |
| TCTGCTTTAACAATGGAGGA+AGG | 0.582852 | 1.4:-66039190 | MS.gene69915:CDS |
| TCATCATAAGCAGATAAAGA+AGG | 0.585192 | 1.4:-66038999 | MS.gene69915:CDS |
| AAGCCGAAGAGGAAAGGCTG+AGG | 0.585870 | 1.4:-66045799 | MS.gene69915:CDS |
| CAGAAACTAAAGCTGAGGAC+GGG | 0.587267 | 1.4:-66044977 | MS.gene69915:CDS |
| AGGAAAGAATTCGTCGAGGA+GGG | 0.588221 | 1.4:-66045779 | MS.gene69915:CDS |
| GATTGACTTTGAACGAGTAG+TGG | 0.588362 | 1.4:-66044756 | MS.gene69915:CDS |
| GGGGACAGCAAGGAAGGGAA+AGG | 0.588657 | 1.4:-66039818 | MS.gene69915:intron |
| TCAAAGTCAATCTCAAAAGG+AGG | 0.589615 | 1.4:+66044767 | None:intergenic |
| ATGGTTTGAATGGCTCTCCA+GGG | 0.592631 | 1.4:+66041657 | None:intergenic |
| TAATGAAGAGATGAGAGCTA+GGG | 0.596480 | 1.4:-66043968 | MS.gene69915:CDS |
| CACTTTAGGGGACGTACTGG+AGG | 0.599208 | 1.4:+66039088 | None:intergenic |
| AAATGGAATAATACATCCCA+CGG | 0.600447 | 1.4:-66039457 | MS.gene69915:CDS |
| CCAGAAACTAAAGCTGAGGA+CGG | 0.601449 | 1.4:-66044978 | MS.gene69915:CDS |
| CTTTGGCATGAAGACAATGT+TGG | 0.602709 | 1.4:-66039843 | MS.gene69915:CDS |
| AGAAATTGCTTGCTTCCACA+AGG | 0.603572 | 1.4:-66041194 | MS.gene69915:CDS |
| CATGAAGACAATGTTGGTCG+GGG | 0.605014 | 1.4:-66039837 | MS.gene69915:CDS |
| GAGGTTGCTCCAACACTCCG+TGG | 0.605581 | 1.4:+66039440 | None:intergenic |
| AGGTCCAAAATGTGAAGACT+GGG | 0.607397 | 1.4:-66039216 | MS.gene69915:CDS |
| TATCTCAATCCTTGTAGACA+TGG | 0.608911 | 1.4:-66040165 | MS.gene69915:CDS |
| TGGTCGGGGACAGCAAGGAA+GGG | 0.610490 | 1.4:-66039823 | MS.gene69915:CDS |
| AATGTTGGTCGGGGACAGCA+AGG | 0.612021 | 1.4:-66039828 | MS.gene69915:CDS |
| TCACTTCTCAATATTGAGGG+AGG | 0.612602 | 1.4:-66045169 | MS.gene69915:intron |
| GGCAATCCATCAATGGGAGA+CGG | 0.612895 | 1.4:+66040301 | None:intergenic |
| AAGCTTCCTTGGACGAACCA+AGG | 0.614170 | 1.4:+66048198 | None:intergenic |
| TGCCATAAATTTAGTACCAG+GGG | 0.616503 | 1.4:+66045703 | None:intergenic |
| CCCGAGTTCTGCACAAATCG+GGG | 0.617800 | 1.4:+66039112 | None:intergenic |
| AGGTTGCTCCAACACTCCGT+GGG | 0.618962 | 1.4:+66039441 | None:intergenic |
| AGTCATACATACCAGTTGCA+AGG | 0.619127 | 1.4:+66048170 | None:intergenic |
| TGGTGTAGTGATACCCAGAA+AGG | 0.622106 | 1.4:-66040121 | MS.gene69915:intron |
| CAAAGTCAATCTCAAAAGGA+GGG | 0.624467 | 1.4:+66044768 | None:intergenic |
| ATTTATGGCATCTCTGTCAG+TGG | 0.624598 | 1.4:-66045690 | MS.gene69915:CDS |
| AGTAATACTTCAAATGCCAC+GGG | 0.625719 | 1.4:-66043938 | MS.gene69915:CDS |
| AAGGAATTCACTGCCATGGG+TGG | 0.626307 | 1.4:-66044428 | MS.gene69915:CDS |
| GATCGAGAGTGGGTAACGAT+CGG | 0.629405 | 1.4:+66048505 | None:intergenic |
| GCGTCAAGAAGCTGCATCTG+GGG | 0.630800 | 1.4:-66039029 | MS.gene69915:CDS |
| TGAAACACATCTTTCATGAG+TGG | 0.631778 | 1.4:+66040495 | None:intergenic |
| ATGCCATAAATTTAGTACCA+GGG | 0.633893 | 1.4:+66045702 | None:intergenic |
| AGCATTACAGGAAGCCGAAG+AGG | 0.635386 | 1.4:-66045810 | MS.gene69915:intron |
| TATGTCTAGTCATTGCGCCA+TGG | 0.637403 | 1.4:+66039317 | None:intergenic |
| GCTTTAGTATTCCACTTTAG+GGG | 0.639695 | 1.4:+66039076 | None:intergenic |
| GATGCCATAAATTTAGTACC+AGG | 0.641743 | 1.4:+66045701 | None:intergenic |
| TGCAGGACGAAGAACAGCGT+CGG | 0.642893 | 1.4:-66040609 | MS.gene69915:intron |
| AATACTGGCAAATCCAACAA+AGG | 0.645916 | 1.4:+66042721 | None:intergenic |
| CACATCCCAAAACCTCCGGA+TGG | 0.646836 | 1.4:-66040141 | MS.gene69915:CDS |
| ACCATTTGATCAGCTTATGG+GGG | 0.647585 | 1.4:-66041639 | MS.gene69915:CDS |
| TATTGAGAAGTGAACCTCGT+GGG | 0.648171 | 1.4:+66045179 | None:intergenic |
| TGGTTTGAATGGCTCTCCAG+GGG | 0.653431 | 1.4:+66041658 | None:intergenic |
| AACTTGTACTTGGATATGAA+CGG | 0.654472 | 1.4:-66048404 | MS.gene69915:CDS |
| GAGGAAAGAATTCGTCGAGG+AGG | 0.656944 | 1.4:-66045780 | MS.gene69915:CDS |
| GGGAGCCTGGATACAAGGAA+AGG | 0.657433 | 1.4:-66043654 | MS.gene69915:CDS |
| TGTGTCTTCAAGCTTCCTTG+TGG | 0.659538 | 1.4:+66041179 | None:intergenic |
| GATTTGATCTTCATGAACAG+CGG | 0.659769 | 1.4:+66044141 | None:intergenic |
| ATAAGTAAGATAACCACCCA+TGG | 0.660100 | 1.4:+66044415 | None:intergenic |
| TGCCATCAGGGTGAAAACAA+GGG | 0.672515 | 1.4:+66048372 | None:intergenic |
| TGAATGGAAAACGATTTGCA+TGG | 0.674776 | 1.4:-66041343 | MS.gene69915:CDS |
| TTTGTTGTATGGCGAACTGG+AGG | 0.678143 | 1.4:+66039421 | None:intergenic |
| TAAGCCAGAAACTAAAGCTG+AGG | 0.678336 | 1.4:-66044982 | MS.gene69915:CDS |
| GTGAAGCCAAATCATGTGCA+CGG | 0.683896 | 1.4:+66040554 | None:intergenic |
| TGGGTTTAGAAGCGTCGATG+GGG | 0.687395 | 1.4:+66048450 | None:intergenic |
| TTATCAGAAAATGAGGCCCG+TGG | 0.691700 | 1.4:+66043922 | None:intergenic |
| GACAAGTTATCTCACCAGCA+GGG | 0.693407 | 1.4:+66041453 | None:intergenic |
| TATGGAGAACATAATCACCA+TGG | 0.694386 | 1.4:-66039334 | MS.gene69915:CDS |
| GATTGAGGCCTGCACCATCG+AGG | 0.702437 | 1.4:-66039168 | MS.gene69915:CDS |
| GCTTCTAAACCCAATCCCAA+CGG | 0.705964 | 1.4:-66048440 | MS.gene69915:CDS |
| CTACGTCGGAGATCGAGAGT+GGG | 0.712363 | 1.4:+66048495 | None:intergenic |
| GGTATCACTACACCATCCGG+AGG | 0.715762 | 1.4:+66040129 | None:intergenic |
| TGAATCAGCAACGTTCCCGG+CGG | 0.716241 | 1.4:-66045938 | MS.gene69915:CDS |
| ATATTGAGAAGTGAACCTCG+TGG | 0.763937 | 1.4:+66045178 | None:intergenic |
| TCCGACGTAGTCGAAGACGA+CGG | 0.766547 | 1.4:-66048482 | MS.gene69915:CDS |
| GCTCTCTTTAGCTACCCACG+AGG | 0.777239 | 1.4:-66045193 | MS.gene69915:CDS |
| GCTGAGGAAAGAATTCGTCG+AGG | 0.778095 | 1.4:-66045783 | MS.gene69915:CDS |
| GCCGTCGTCTTCGACTACGT+CGG | 0.784088 | 1.4:+66048481 | None:intergenic |
| GCCAACATTAGAGATCAGAG+AGG | 0.794461 | 1.4:-66044681 | MS.gene69915:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 66038943 | 66048558 | 66038943 | ID=MS.gene69915 |
| chr1.4 | mRNA | 66038943 | 66048558 | 66038943 | ID=MS.gene69915.t1;Parent=MS.gene69915 |
| chr1.4 | exon | 66048370 | 66048558 | 66048370 | ID=MS.gene69915.t1.exon1;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66048370 | 66048558 | 66048370 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66048182 | 66048284 | 66048182 | ID=MS.gene69915.t1.exon2;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66048182 | 66048284 | 66048182 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66045908 | 66045984 | 66045908 | ID=MS.gene69915.t1.exon3;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66045908 | 66045984 | 66045908 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66045631 | 66045822 | 66045631 | ID=MS.gene69915.t1.exon4;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66045631 | 66045822 | 66045631 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66045329 | 66045448 | 66045329 | ID=MS.gene69915.t1.exon5;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66045329 | 66045448 | 66045329 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66045170 | 66045232 | 66045170 | ID=MS.gene69915.t1.exon6;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66045170 | 66045232 | 66045170 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66044935 | 66045078 | 66044935 | ID=MS.gene69915.t1.exon7;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66044935 | 66045078 | 66044935 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66044682 | 66044846 | 66044682 | ID=MS.gene69915.t1.exon8;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66044682 | 66044846 | 66044682 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66044406 | 66044483 | 66044406 | ID=MS.gene69915.t1.exon9;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66044406 | 66044483 | 66044406 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66044114 | 66044200 | 66044114 | ID=MS.gene69915.t1.exon10;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66044114 | 66044200 | 66044114 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66043921 | 66044001 | 66043921 | ID=MS.gene69915.t1.exon11;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66043921 | 66044001 | 66043921 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66043591 | 66043686 | 66043591 | ID=MS.gene69915.t1.exon12;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66043591 | 66043686 | 66043591 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66042693 | 66042763 | 66042693 | ID=MS.gene69915.t1.exon13;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66042693 | 66042763 | 66042693 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66041623 | 66041751 | 66041623 | ID=MS.gene69915.t1.exon14;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66041623 | 66041751 | 66041623 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66041468 | 66041544 | 66041468 | ID=MS.gene69915.t1.exon15;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66041468 | 66041544 | 66041468 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66041340 | 66041380 | 66041340 | ID=MS.gene69915.t1.exon16;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66041340 | 66041380 | 66041340 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66041173 | 66041247 | 66041173 | ID=MS.gene69915.t1.exon17;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66041173 | 66041247 | 66041173 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66040475 | 66040626 | 66040475 | ID=MS.gene69915.t1.exon18;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66040475 | 66040626 | 66040475 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66040277 | 66040381 | 66040277 | ID=MS.gene69915.t1.exon19;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66040277 | 66040381 | 66040277 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66040122 | 66040197 | 66040122 | ID=MS.gene69915.t1.exon20;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66040122 | 66040197 | 66040122 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66039819 | 66039901 | 66039819 | ID=MS.gene69915.t1.exon21;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66039819 | 66039901 | 66039819 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| chr1.4 | exon | 66038943 | 66039558 | 66038943 | ID=MS.gene69915.t1.exon22;Parent=MS.gene69915.t1 |
| chr1.4 | CDS | 66038943 | 66039558 | 66038943 | ID=cds.MS.gene69915.t1;Parent=MS.gene69915.t1 |
| Gene Sequence |
| Protein sequence |
