AlfalfaGEDB | MS.gene70142

M. sativa cultivar XinJiangDaYe / MS.gene70142

KEGG: K14498
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70142.t1	XP_003630417.2	99.7	354	1	0	1	354	2	355	1.00E-184	656

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70142.t1	P43291	87.6	314	39	0	1	314	1	314	7.6e-165	581.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70142.t1	G7LGG5	99.7	354	1	0	1	354	2	355	7.2e-185	656.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene20783	MS.gene70142	PPI
MS.gene44935	MS.gene70142	PPI
MS.gene70142	MS.gene011860	PPI
MS.gene70142	MS.gene53861	PPI
MS.gene70142	MS.gene28575	PPI
MS.gene70142	MS.gene07262	PPI
MS.gene70142	MS.gene87330	PPI
MS.gene70142	MS.gene048687	PPI
MS.gene70142	MS.gene20834	PPI
MS.gene70142	MS.gene008298	PPI

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70142.t1	MTR_8g095330	99.718	354	1	0	1	354	2	355	0.0	732
MS.gene70142.t1	MTR_3g097320	90.141	355	34	1	1	354	1	355	0.0	645
MS.gene70142.t1	MTR_2g006330	82.768	354	58	1	1	354	1	351	0.0	603
MS.gene70142.t1	MTR_4g086855	71.084	332	94	2	2	333	21	350	0.0	506
MS.gene70142.t1	MTR_4g099240	70.909	330	91	2	2	329	3	329	8.67e-178	496
MS.gene70142.t1	MTR_1g034030	76.080	301	71	1	2	302	22	321	1.51e-177	497
MS.gene70142.t1	MTR_8g089975	76.254	299	69	1	1	299	1	297	2.07e-176	493
MS.gene70142.t1	MTR_5g064540	74.834	302	73	1	1	302	1	299	2.42e-175	490
MS.gene70142.t1	MTR_5g013550	74.834	302	73	2	2	302	4	303	1.16e-173	486
MS.gene70142.t1	MTR_8g079560	68.373	332	104	1	2	333	21	351	7.35e-172	483

Showing 1 to 10 of 372 entries

Previous1 2 3 4 5…38Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70142.t1	AT1G10940	83.747	363	50	1	1	354	1	363	0.0	597
MS.gene70142.t1	AT1G60940	82.548	361	56	2	1	354	1	361	0.0	590
MS.gene70142.t1	AT1G60940	82.548	361	56	2	1	354	1	361	0.0	590
MS.gene70142.t1	AT1G10940	81.941	371	50	2	1	354	1	371	0.0	590
MS.gene70142.t1	AT5G63650	88.782	312	35	0	1	312	1	312	0.0	584
MS.gene70142.t1	AT5G08590	83.429	350	57	1	1	350	1	349	0.0	572
MS.gene70142.t1	AT2G23030	77.177	333	74	1	1	331	1	333	0.0	532
MS.gene70142.t1	AT4G33950	76.645	304	66	2	2	303	19	319	1.17e-180	504
MS.gene70142.t1	AT4G33950	76.645	304	66	2	2	303	19	319	3.17e-180	504
MS.gene70142.t1	AT5G66880	74.359	312	77	2	2	312	20	329	8.06e-176	493

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 105 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTGGGTTGCCTCTC+TGG	0.343755	4.1:-7447635	None:intergenic
AACTCCAGCTTATATAGCAC+CGG	0.570248	4.1:+7446654	MS.gene70142:CDS
AAGAAGATGAGTATGACAAG+AGG	0.545939	4.1:+7447805	MS.gene70142:CDS
AATGGAGTATGCAGCTGGAG+GGG	0.589893	4.1:+7446111	MS.gene70142:CDS
ACACTTTGAATAGAAAAGCT+TGG	0.460081	4.1:-7447648	None:intergenic
ACATGATAACATACCCTTAA+TGG	0.192647	4.1:-7447179	None:intergenic
ACCCTTTATGTCATGCTGGT+TGG	0.511070	4.1:+7446917	MS.gene70142:CDS
ACCGGAGGTTCTTTCTAGGA+GGG	0.575393	4.1:+7446672	MS.gene70142:CDS
ACCGGCCTAGATACCGGAGG+AGG	0.562102	4.1:-7447708	None:intergenic
ACCTCCGGTGCTATATAAGC+TGG	0.515096	4.1:-7446658	None:intergenic

Showing 1 to 10 of 105 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACACTTTGAATAGAAAAGCT+TGG	-	chr4.1:7447651-7447670	None:intergenic	30.0%
ACATGATAACATACCCTTAA+TGG	-	chr4.1:7447182-7447201	None:intergenic	30.0%
ATCATAGAAAGAAGTAAGGA+AGG	-	chr4.1:7446748-7446767	None:intergenic	30.0%
ATGACAAGAATAATAAGGTC+AGG	-	chr4.1:7447517-7447536	None:intergenic	30.0%
ATGAGGTTAATAACATGACA+TGG	+	chr4.1:7446176-7446195	MS.gene70142:intron	30.0%
ATTACTATGGCTAAATGAGT+AGG	-	chr4.1:7446094-7446113	None:intergenic	30.0%
ATTGGTGAAAAGTGGAAAAT+TGG	+	chr4.1:7445017-7445036	MS.gene70142:intron	30.0%
CAAAATCATATAGTTGAACC+TGG	-	chr4.1:7445329-7445348	None:intergenic	30.0%
CACTTTGAATAGAAAAGCTT+GGG	-	chr4.1:7447650-7447669	None:intergenic	30.0%
GACGAGATAATGAAAATTGT+GGG	+	chr4.1:7447672-7447691	MS.gene70142:CDS	30.0%

Showing 1 to 10 of 214 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	7444766	7447869	7444766	ID=MS.gene70142
chr4.1	mRNA	7444766	7447869	7444766	ID=MS.gene70142.t1;Parent=MS.gene70142
chr4.1	exon	7444766	7444885	7444766	ID=MS.gene70142.t1.exon1;Parent=MS.gene70142.t1
chr4.1	CDS	7444766	7444885	7444766	ID=cds.MS.gene70142.t1;Parent=MS.gene70142.t1
chr4.1	exon	7445901	7445975	7445901	ID=MS.gene70142.t1.exon2;Parent=MS.gene70142.t1
chr4.1	CDS	7445901	7445975	7445901	ID=cds.MS.gene70142.t1;Parent=MS.gene70142.t1
chr4.1	exon	7446079	7446180	7446079	ID=MS.gene70142.t1.exon3;Parent=MS.gene70142.t1
chr4.1	CDS	7446079	7446180	7446079	ID=cds.MS.gene70142.t1;Parent=MS.gene70142.t1
chr4.1	exon	7446287	7446340	7446287	ID=MS.gene70142.t1.exon4;Parent=MS.gene70142.t1
chr4.1	CDS	7446287	7446340	7446287	ID=cds.MS.gene70142.t1;Parent=MS.gene70142.t1
chr4.1	exon	7446432	7446524	7446432	ID=MS.gene70142.t1.exon5;Parent=MS.gene70142.t1
chr4.1	CDS	7446432	7446524	7446432	ID=cds.MS.gene70142.t1;Parent=MS.gene70142.t1
chr4.1	exon	7446616	7446708	7446616	ID=MS.gene70142.t1.exon6;Parent=MS.gene70142.t1
chr4.1	CDS	7446616	7446708	7446616	ID=cds.MS.gene70142.t1;Parent=MS.gene70142.t1
chr4.1	exon	7446890	7446994	7446890	ID=MS.gene70142.t1.exon7;Parent=MS.gene70142.t1
chr4.1	CDS	7446890	7446994	7446890	ID=cds.MS.gene70142.t1;Parent=MS.gene70142.t1
chr4.1	exon	7447089	7447187	7447089	ID=MS.gene70142.t1.exon8;Parent=MS.gene70142.t1
chr4.1	CDS	7447089	7447187	7447089	ID=cds.MS.gene70142.t1;Parent=MS.gene70142.t1
chr4.1	exon	7447546	7447869	7447546	ID=MS.gene70142.t1.exon9;Parent=MS.gene70142.t1
chr4.1	CDS	7447546	7447869	7447546	ID=cds.MS.gene70142.t1;Parent=MS.gene70142.t1

Gene Sequence

>MS.gene70142

ATGGATAAGTATGAGGTTGTTAAGGATTTGGGTGCTGGCAATTTTGGTGTGGCTAGGCTTCTCAGGAATAAGGAGACTAAGGAGCTTGTTGCTATGAAATACATTGAACGTGGCCAAAAGGTTTCTTCTCTCTTTCAATTCAAGTTTTTTACTTTTCTGTCTGTTTTTTGTTCATCATTTTTTTAAGATTTATCAGTATCATGTTTTGTATTTGGAGTAATCATTGAAGGACTTGTAAAGTTGGAATTTTTATTGGTGAAAAGTGGAAAATTGGTGTTGAGATATGCATTTGTGCAAATCAAAGGAATTGAGCAGGGATAGAAAAATTCAATTAAAAATCATAGCTTTCATGCATGAAGCTCCCCCTGATTTTGAAAAGTTATTAATTTGCTAATTGTTGCTGATCAAATATACATTCAGATAATTCTTTCACATGAAATACATATTTAGCTAATTGTTGCTGTCTGAAAGAATAATCTGCTTGTAAACAGTGCTTGGCTTACTTATACACTTTCTTGAAGAGAAATGAAATGAATTAAACTGGATCTTTAAGGTCTCAGCCAGGTTCAACTATATGATTTTGAAGAAATTAAACTGTTTATTTATGTTCCAGAGAGGAAGTTTCATTTACTTCCAATATTGCTGTTTATGCACACTGGTCTCATGAAATAGATATTGTAACAGTTATATTAATTCAACGAATGTTTATAGGAATACGAACATTTAAAAGGGGTAAATAGTAAAAAAAACATACTTTCAAATCTTACAAATTACAGGTAGTTACTCTAGAGGGAATAACAGTTGCAGCAAAAACTAGTTGAAAGCATAATATGTTTATTCAACATCAATCTTTATGTTACTCAAACAAGTTGCCAATATTTAGAACCAATAGCACCATGGATTCTACTACTTGTTCCATTTATCTATGCTTTATATTGCACATGCTAACAAAGCAGTGAAGCAGAAAATTTGAAACAGTATCATATGAACATTCACTTAAAGCTACAAAATAATATTTTGCTAATTGATTGAGGTAGCACACCTGTTGAAAAGAAGAAGAAAAAAAACTATTAATTTGACATCTGGGATTTTAAGTTTTTTTTTTCTTCTTATTTTTCTGCCACTTCATTTCCAGATTGATGAGAATGTGGCTAGAGAGATTATCAACCACAGGTCACTTCGGCACCCGAATATAATTCGCTTCAAGGAGGTAAGGACTTTATTTGTTTATCTGTTGGATCAGTTTGTATTGATTACACTGTTAATTGTTCTGAGTTGTTAACTGTTACTTCAATGGGGTTTTGATTGGTCAGGTGGTTTTGACCCCTACTCATTTAGCCATAGTAATGGAGTATGCAGCTGGAGGGGAACTCTTTGAGAGGATCTGTAATGCTGGTCGGTTCAGCGAAGATGAGGTTAATAACATGACATGGTCTTCAAATGTTCTGCTCTTTTTGACAATTTTTTAGTGTCATTGCTACTGTATTCATATCTCATTTATTTTCTACTTTGATTGTTCAGGCTAGATATTTCTTTCAGCAGCTGATATCTGGGGTCCATTACTGTCATGCCATGGTAAAATCTTGCTCAATTTTTGAAAAATTATATAGGACCTTGGGGATTCAAAAATACAGTGTGAACAGATGCTTTTACTCTCCTTTTGCAGCAAATATGTCACAGAGATTTGAAGCTGGAAAATACACTTTTAGATGGAAGCCCTGCACCTCGCTTGAAAATTTGTGACTTTGGTTATTCCAAGGTACTGGAACGATTACCATTGAGTTTCACAGTTTTAACAATATTTCGTTTACTGTCTATATCTCTCAAAGTGCTTCCTTTTTGTCGTGTAGTCATCTTTGCTTCATTCCCGACCCAAATCAACTGTTGGAACTCCAGCTTATATAGCACCGGAGGTTCTTTCTAGGAGGGAGTATGATGGGAAGGTATGTACACCTTTTCAGAATTGGTTCTGCATAGTTCCTTCCTTACTTCTTTCTATGATTGCGTCTATACATGTTTGTTATCTCTGATTTTATCACTATATTCCTCTAATCATGCTATCTGGGAAAGTCTTTTAAATGCATCTACTGAACTAGTATATTTATGATTCTATAACTGTTTTAGTTGGCTGATGTCTGGTCCTGCGGAGTGACCCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGATCAAGATGACCCTAGAAATTTTAGGAAAACAATTCAGGTATGCCATCTTTCCTCCCTTACAATACTGATGTTCATATTGTTTCATGTTATTATCCCATCATCTTATCCCCGTTTCATTTCCTCTTCGGCAGCGGATAATGGCTGTTCAATACAAAATCCCTGATTATGTCCACATATCTCAAGATTGCAAACACCTCCTATCTCGTATATTTGTTGCAAATCCATTAAGGGTATGTTATCATGTTTGTGGAATTTGTATTATATTATCTTTCTTTTGTTACAATTTGATGGTGTCATCTCTAATCTATTATAACAAAAAGATAAAATAAAGTCAAATTGTTTTTGTAAATAAATTGTTTTTATAAGCTATCATGGAGAGCTTATGGAAATAAGCTGAAAACTGTTTTTTTTTTTTTAAGCGGAAGCTAAAAACTGTTTATGAACATGTCATAAGCTATTTTCACACGCTCTTCCAAACAATCTCACAAGTGTTTATGCCAACAGATAAGTTCAAATAAGTCAATCATAACAGATTTATTGTCTATCAAGCTAACTACCTGACCTTATTATTCTTGTCATTGTCTACAGAGAATTTCTCTCAAGGAAATCAAGAACCATCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCCCAAGCTGCGTATTACCAGAGAGGCAACCCAAGCTTTTCTATTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAGAACCTCCTCCGGTATCTAGGCCGGTCAAAGGTTTTGGCTGGGAAGGCGAAGAAGAAGAGGAGGAAGAAGTGGAAGAAGAGGTTGAGGAAGAGGAGGATGAAGAAGATGAGTATGACAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTTCAAATCAGTTGA

Protein sequence

>MS.gene70142.t1

MDKYEVVKDLGAGNFGVARLLRNKETKELVAMKYIERGQKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCKHLLSRIFVANPLRRISLKEIKNHPWFLKNLPRELTESAQAAYYQRGNPSFSIQSVDEIMKIVGEAREPPPVSRPVKGFGWEGEEEEEEEVEEEVEEEEDEEDEYDKRVKEVHASGEFQIS