Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70562.t1 | XP_003601303.1 | 94.7 | 206 | 11 | 0 | 1 | 206 | 1 | 206 | 2.00E-92 | 348.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70562.t1 | Q9LZH5 | 39.5 | 200 | 102 | 6 | 3 | 195 | 2 | 189 | 2.3e-20 | 100.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70562.t1 | B7FFE5 | 94.7 | 206 | 11 | 0 | 1 | 206 | 1 | 206 | 1.4e-92 | 348.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049828 | MS.gene70562 | 0.846105 | 2.68E-59 | -1.69E-46 |
| MS.gene050581 | MS.gene70562 | 0.819459 | 1.15E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene70562 | 0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene055636 | MS.gene70562 | 0.805466 | 1.32E-49 | -1.69E-46 |
| MS.gene056611 | MS.gene70562 | 0.841925 | 3.54E-58 | -1.69E-46 |
| MS.gene058903 | MS.gene70562 | 0.83659 | 8.56E-57 | -1.69E-46 |
| MS.gene059974 | MS.gene70562 | 0.808401 | 3.15E-50 | -1.69E-46 |
| MS.gene060799 | MS.gene70562 | 0.815336 | 9.74E-52 | -1.69E-46 |
| MS.gene060801 | MS.gene70562 | 0.804713 | 1.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70562.t1 | MTR_3g079210 | 95.146 | 206 | 10 | 0 | 1 | 206 | 1 | 206 | 6.24e-129 | 361 |
| MS.gene70562.t1 | MTR_5g006950 | 39.200 | 125 | 73 | 2 | 46 | 170 | 24 | 145 | 2.80e-18 | 78.6 |
| MS.gene70562.t1 | MTR_1g103490 | 40.659 | 91 | 51 | 2 | 46 | 136 | 24 | 111 | 6.76e-16 | 72.0 |
| MS.gene70562.t1 | MTR_5g070360 | 34.328 | 134 | 78 | 3 | 42 | 175 | 28 | 151 | 2.76e-15 | 71.2 |
| MS.gene70562.t1 | MTR_2g008580 | 40.206 | 97 | 55 | 2 | 34 | 130 | 20 | 113 | 4.98e-15 | 70.9 |
| MS.gene70562.t1 | MTR_2g008560 | 38.182 | 110 | 55 | 4 | 57 | 166 | 39 | 135 | 8.80e-15 | 69.7 |
| MS.gene70562.t1 | MTR_1g103450 | 36.029 | 136 | 62 | 4 | 46 | 181 | 24 | 134 | 2.73e-13 | 65.1 |
| MS.gene70562.t1 | MTR_7g095230 | 36.000 | 125 | 73 | 5 | 47 | 169 | 28 | 147 | 8.18e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70562.t1 | AT3G43720 | 47.015 | 134 | 63 | 3 | 43 | 169 | 32 | 164 | 1.32e-28 | 106 |
| MS.gene70562.t1 | AT3G43720 | 46.324 | 136 | 63 | 3 | 43 | 169 | 32 | 166 | 7.84e-28 | 104 |
| MS.gene70562.t1 | AT2G27130 | 43.519 | 108 | 59 | 2 | 34 | 140 | 24 | 130 | 1.01e-23 | 93.2 |
| MS.gene70562.t1 | AT1G03103 | 35.443 | 158 | 85 | 5 | 49 | 204 | 24 | 166 | 4.23e-16 | 73.2 |
| MS.gene70562.t1 | AT3G22600 | 40.698 | 86 | 48 | 2 | 46 | 131 | 24 | 106 | 8.00e-16 | 72.4 |
| MS.gene70562.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene70562.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene70562.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene70562.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene70562.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene70562.t1 | AT2G48130 | 33.645 | 107 | 68 | 2 | 50 | 156 | 30 | 133 | 2.17e-15 | 71.6 |
| MS.gene70562.t1 | AT4G08670 | 34.356 | 163 | 94 | 6 | 42 | 197 | 40 | 196 | 6.51e-15 | 70.9 |
| MS.gene70562.t1 | AT2G13820 | 35.772 | 123 | 75 | 2 | 50 | 170 | 27 | 147 | 1.08e-14 | 69.3 |
| MS.gene70562.t1 | AT2G13820 | 35.772 | 123 | 75 | 2 | 50 | 170 | 39 | 159 | 1.27e-14 | 69.3 |
| MS.gene70562.t1 | AT5G64080 | 30.909 | 165 | 93 | 5 | 42 | 206 | 36 | 179 | 7.95e-14 | 67.4 |
| MS.gene70562.t1 | AT5G64080 | 33.077 | 130 | 77 | 4 | 42 | 165 | 36 | 161 | 8.71e-14 | 67.0 |
| MS.gene70562.t1 | AT4G14815 | 35.484 | 93 | 57 | 2 | 40 | 132 | 16 | 105 | 2.95e-13 | 65.1 |
| MS.gene70562.t1 | AT5G09370 | 34.188 | 117 | 69 | 3 | 50 | 163 | 28 | 139 | 3.59e-13 | 65.1 |
| MS.gene70562.t1 | AT2G13820 | 37.662 | 77 | 46 | 1 | 54 | 130 | 31 | 105 | 7.95e-13 | 63.2 |
| MS.gene70562.t1 | AT5G09370 | 35.714 | 98 | 58 | 2 | 50 | 147 | 28 | 120 | 2.60e-12 | 62.8 |
| MS.gene70562.t1 | AT5G09370 | 37.931 | 87 | 49 | 2 | 60 | 146 | 38 | 119 | 1.47e-11 | 60.1 |
Find 52 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCCTTCTGGAAGCAAAAT+TGG | 0.248172 | 3.1:-64682827 | MS.gene70562:CDS |
| GCAGGTGTTCTTAGCCCTTC+TGG | 0.257309 | 3.1:-64682839 | MS.gene70562:intron |
| AACAGCTTACACAAACAAAT+AGG | 0.265322 | 3.1:+64685211 | None:intergenic |
| GGCGCTAAAACCGCGGTTTC+CGG | 0.269928 | 3.1:+64685370 | None:intergenic |
| TTTGCATCACTCTCATTTCA+TGG | 0.285544 | 3.1:-64685433 | MS.gene70562:CDS |
| GGACTTAGGGCTGATCCTTT+TGG | 0.329469 | 3.1:+64683180 | None:intergenic |
| TGGAGTATCTGCTGCTGCTT+TGG | 0.352720 | 3.1:-64685407 | MS.gene70562:CDS |
| CCTCCTGTTAGTGCTTGTTC+AGG | 0.362697 | 3.1:-64685103 | MS.gene70562:intron |
| CTTAAGCTTCCAACTATTTG+TGG | 0.365023 | 3.1:-64685136 | MS.gene70562:CDS |
| ATTTGTTTGTGTAAGCTGTT+AGG | 0.384262 | 3.1:-64685208 | MS.gene70562:CDS |
| TCAACTTCATCTGATAGTTC+AGG | 0.394833 | 3.1:-64683156 | MS.gene70562:intron |
| GTCAGATTGTTTGACATTTG+TGG | 0.406541 | 3.1:-64685305 | MS.gene70562:CDS |
| GAGTTAGCAGGGTTGATTGA+TGG | 0.411939 | 3.1:-64685238 | MS.gene70562:CDS |
| AATGTAAAATCAGAAGAATA+TGG | 0.417381 | 3.1:+64682739 | None:intergenic |
| TCAGGACAACATCCTTTGTC+TGG | 0.420386 | 3.1:+64685259 | None:intergenic |
| TTACCTGAACAAGCACTAAC+AGG | 0.424650 | 3.1:+64685100 | None:intergenic |
| AGATGAAGTTGAAGGACTTA+GGG | 0.439279 | 3.1:+64683167 | None:intergenic |
| TGTTTGACATTTGTGGAAGA+TGG | 0.446855 | 3.1:-64685298 | MS.gene70562:CDS |
| GGTAATGCTGCTGATTCTAT+TGG | 0.462047 | 3.1:-64685184 | MS.gene70562:CDS |
| ACAGCTTACACAAACAAATA+GGG | 0.462564 | 3.1:+64685212 | None:intergenic |
| CAGATGAAGTTGAAGGACTT+AGG | 0.463432 | 3.1:+64683166 | None:intergenic |
| AAAACCGCGGTTTCCGGTGC+CGG | 0.471159 | 3.1:+64685376 | None:intergenic |
| GCGCCATCACCGGCAGATGA+TGG | 0.475243 | 3.1:-64685352 | MS.gene70562:CDS |
| GGCAGATGATGGATGCTTGA+TGG | 0.475901 | 3.1:-64685341 | MS.gene70562:CDS |
| GGATGTTGTCCTGAGTTAGC+AGG | 0.476788 | 3.1:-64685250 | MS.gene70562:CDS |
| TGCTGCTTTGGCTCAATCAC+CGG | 0.486295 | 3.1:-64685395 | MS.gene70562:CDS |
| GTTTGACATTTGTGGAAGAT+GGG | 0.488176 | 3.1:-64685297 | MS.gene70562:CDS |
| TCACTCTCATTTCATGGAGA+TGG | 0.490910 | 3.1:-64685427 | MS.gene70562:CDS |
| GTAGTAACACCACAAATAGT+TGG | 0.491016 | 3.1:+64685127 | None:intergenic |
| GAACTATCAGATGAAGTTGA+AGG | 0.493768 | 3.1:+64683159 | None:intergenic |
| CATCCATCATCTGCCGGTGA+TGG | 0.511093 | 3.1:+64685349 | None:intergenic |
| TTTGGCTCAATCACCGGCAC+CGG | 0.516118 | 3.1:-64685389 | MS.gene70562:CDS |
| GATATGGCAATGTCACCAAA+AGG | 0.530694 | 3.1:-64683195 | MS.gene70562:CDS |
| CCTTCTGGAAGCAAAATTGG+AGG | 0.554339 | 3.1:-64682824 | MS.gene70562:CDS |
| TGCAGAGGCTTGAATGCTTG+AGG | 0.572865 | 3.1:+64682799 | None:intergenic |
| TCAATCAACCCTGCTAACTC+AGG | 0.575923 | 3.1:+64685241 | None:intergenic |
| TCCACTCAGTGATGGAGGCA+AGG | 0.577085 | 3.1:+64683366 | None:intergenic |
| CGGTGATGGCGCTAAAACCG+CGG | 0.578610 | 3.1:+64685363 | None:intergenic |
| TGGAGACAGAGACAGTGGAC+AGG | 0.579721 | 3.1:+64682759 | None:intergenic |
| ATAGCATCTCCACTCAGTGA+TGG | 0.584097 | 3.1:+64683358 | None:intergenic |
| ATCAAGCATCCATCATCTGC+CGG | 0.595406 | 3.1:+64685343 | None:intergenic |
| GATGTTGTCCTGAGTTAGCA+GGG | 0.597137 | 3.1:-64685249 | MS.gene70562:CDS |
| TGCAAAGAGTAAAGAAACAA+TGG | 0.599464 | 3.1:+64685450 | None:intergenic |
| GAATATGGAGACAGAGACAG+TGG | 0.605345 | 3.1:+64682754 | None:intergenic |
| GCATCTCCACTCAGTGATGG+AGG | 0.609350 | 3.1:+64683361 | None:intergenic |
| GGAGACAGAGACAGTGGACA+GGG | 0.621999 | 3.1:+64682760 | None:intergenic |
| AGTGATGGAGGCAAGGACAC+AGG | 0.629179 | 3.1:+64683373 | None:intergenic |
| TGTTTGTGTAAGCTGTTAGG+TGG | 0.635667 | 3.1:-64685205 | MS.gene70562:CDS |
| TCCTTGCCTCCATCACTGAG+TGG | 0.643834 | 3.1:-64683367 | MS.gene70562:CDS |
| ATCACCGGCACCGGAAACCG+CGG | 0.645420 | 3.1:-64685380 | MS.gene70562:CDS |
| AAGTTGACAAAACCAGACAA+AGG | 0.698102 | 3.1:-64685271 | MS.gene70562:CDS |
| CCTGAACAAGCACTAACAGG+AGG | 0.707608 | 3.1:+64685103 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr3.1:64683248-64683267 | MS.gene70562:intron | 0.0% |
| !! | TTTAAATAATGTTAAAACAA+AGG | + | chr3.1:64684090-64684109 | None:intergenic | 10.0% |
| !!! | TGTTCAAATTTTAAAATATT+TGG | - | chr3.1:64683183-64683202 | MS.gene70562:CDS | 10.0% |
| !! | AAAAGAAAATAAAAAAAGAG+TGG | + | chr3.1:64684657-64684676 | None:intergenic | 15.0% |
| !! | AAATTATCCTTAATAACTAT+TGG | + | chr3.1:64683658-64683677 | None:intergenic | 15.0% |
| !! | AACAACAATAAATTAACTTA+TGG | + | chr3.1:64684908-64684927 | None:intergenic | 15.0% |
| !! | AATAGTTATTAAGGATAATT+TGG | - | chr3.1:64683657-64683676 | MS.gene70562:intron | 15.0% |
| !! | ACAATTATTAAATTCAAAGA+AGG | + | chr3.1:64684265-64684284 | None:intergenic | 15.0% |
| !! | ATATAAAAGATGCTATAATT+TGG | - | chr3.1:64683290-64683309 | MS.gene70562:intron | 15.0% |
| !! | ATATGAATTATTCAAAAAGT+TGG | + | chr3.1:64684325-64684344 | None:intergenic | 15.0% |
| !! | GATAAAAATAATTGACAAAA+TGG | + | chr3.1:64683784-64683803 | None:intergenic | 15.0% |
| !! | GTTAAAATATACACTATAAT+TGG | - | chr3.1:64684141-64684160 | MS.gene70562:intron | 15.0% |
| !! | TAATGATCATAAATATCAAT+CGG | - | chr3.1:64685180-64685199 | MS.gene70562:CDS | 15.0% |
| !! | TTATATATTACCAATGATTA+TGG | - | chr3.1:64683978-64683997 | MS.gene70562:intron | 15.0% |
| !! | TTGATAAAATAATGAAGATA+TGG | - | chr3.1:64685012-64685031 | MS.gene70562:intron | 15.0% |
| !!! | ATTTTTAAGTTTTGTTTGAT+AGG | + | chr3.1:64683929-64683948 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr3.1:64683531-64683550 | None:intergenic | 15.0% |
| !!! | GTGTTACAATTATTTATTTT+GGG | + | chr3.1:64684602-64684621 | None:intergenic | 15.0% |
| !!! | TACCAAAAAAAACATATTTT+GGG | + | chr3.1:64683806-64683825 | None:intergenic | 15.0% |
| !! | AAACTAACCAATAGTTATTA+AGG | - | chr3.1:64683648-64683667 | MS.gene70562:intron | 20.0% |
| !! | AATCCTTAAAAAAAAACTTG+AGG | + | chr3.1:64683463-64683482 | None:intergenic | 20.0% |
| !! | ACATTATAATAACTGAATTG+CGG | - | chr3.1:64683431-64683450 | MS.gene70562:intron | 20.0% |
| !! | ATTATTAAATTCAAAGAAGG+CGG | + | chr3.1:64684262-64684281 | None:intergenic | 20.0% |
| !! | TAACTTAAGTAAAACTCATT+TGG | - | chr3.1:64685138-64685157 | MS.gene70562:CDS | 20.0% |
| !! | TAATATTGCAATTACTAGTA+AGG | - | chr3.1:64684520-64684539 | MS.gene70562:intron | 20.0% |
| !! | TATGTAAATTTACATGAACT+TGG | - | chr3.1:64684743-64684762 | MS.gene70562:intron | 20.0% |
| !! | TTGATGGAAAATTCTATATT+TGG | + | chr3.1:64685320-64685339 | None:intergenic | 20.0% |
| !!! | ATCCCAAAATATGTTTTTTT+TGG | - | chr3.1:64683801-64683820 | MS.gene70562:intron | 20.0% |
| !!! | ATTTATTTGTTGAATGGTAA+AGG | + | chr3.1:64684559-64684578 | None:intergenic | 20.0% |
| !!! | CTACCAAAAAAAACATATTT+TGG | + | chr3.1:64683807-64683826 | None:intergenic | 20.0% |
| !!! | GGTGTTACAATTATTTATTT+TGG | + | chr3.1:64684603-64684622 | None:intergenic | 20.0% |
| !!! | TTGCAAATTTATTTGTTGAA+TGG | + | chr3.1:64684565-64684584 | None:intergenic | 20.0% |
| !!! | TTTATTTGTTGAATGGTAAA+GGG | + | chr3.1:64684558-64684577 | None:intergenic | 20.0% |
| ! | AAATTTGCAATAAGTGATGT+AGG | - | chr3.1:64684575-64684594 | MS.gene70562:intron | 25.0% |
| ! | ACAAATTAAGGTGAACAATT+TGG | + | chr3.1:64684630-64684649 | None:intergenic | 25.0% |
| ! | ACTTTAGTACTATATGTTGA+TGG | + | chr3.1:64685336-64685355 | None:intergenic | 25.0% |
| ! | AGAAACAGTTATTATTGCAT+TGG | + | chr3.1:64683571-64683590 | None:intergenic | 25.0% |
| ! | ATAATTAACGATGAGTTAAG+AGG | - | chr3.1:64683370-64683389 | MS.gene70562:CDS | 25.0% |
| ! | CAATAATAGACCATAATCAT+TGG | + | chr3.1:64683991-64684010 | None:intergenic | 25.0% |
| ! | CATGCACATAAAAGTTAATA+AGG | + | chr3.1:64685268-64685287 | None:intergenic | 25.0% |
| ! | GAACAATTAATAACAGACAT+GGG | + | chr3.1:64684444-64684463 | None:intergenic | 25.0% |
| ! | TAACTTATGGAAAACTTACT+TGG | + | chr3.1:64684895-64684914 | None:intergenic | 25.0% |
| ! | TAATTAACGATGAGTTAAGA+GGG | - | chr3.1:64683371-64683390 | MS.gene70562:CDS | 25.0% |
| ! | TAATTGCAATATTATTGCTG+TGG | + | chr3.1:64684514-64684533 | None:intergenic | 25.0% |
| ! | TGAACAATTAATAACAGACA+TGG | + | chr3.1:64684445-64684464 | None:intergenic | 25.0% |
| !! | CTTATTAACTTTTATGTGCA+TGG | - | chr3.1:64685266-64685285 | MS.gene70562:CDS | 25.0% |
| !!! | AAACGACACTAATTTTGAAA+CGG | - | chr3.1:64683741-64683760 | MS.gene70562:intron | 25.0% |
| !!! | CATCCTCAAGTTTTTTTTTA+AGG | - | chr3.1:64683457-64683476 | MS.gene70562:intron | 25.0% |
| !!! | TGTATTTTTCAAAATTGTGC+AGG | - | chr3.1:64685366-64685385 | MS.gene70562:CDS | 25.0% |
| AAACAAAGGTAACACTATGT+TGG | + | chr3.1:64684076-64684095 | None:intergenic | 30.0% | |
| AACAGCTTACACAAACAAAT+AGG | + | chr3.1:64683015-64683034 | None:intergenic | 30.0% | |
| ACAGCTTACACAAACAAATA+GGG | + | chr3.1:64683014-64683033 | None:intergenic | 30.0% | |
| ATTGCAATTACTAGTAAGGT+AGG | - | chr3.1:64684524-64684543 | MS.gene70562:intron | 30.0% | |
| ATTTGTTTGTGTAAGCTGTT+AGG | - | chr3.1:64683015-64683034 | MS.gene70562:intron | 30.0% | |
| TATATATGTGTCACAGCTAT+TGG | - | chr3.1:64684823-64684842 | MS.gene70562:intron | 30.0% | |
| TCGTTAATTATCTCTCATCT+AGG | + | chr3.1:64683361-64683380 | None:intergenic | 30.0% | |
| TGCAAAGAGTAAAGAAACAA+TGG | + | chr3.1:64682776-64682795 | None:intergenic | 30.0% | |
| TTGCAATTACTAGTAAGGTA+GGG | - | chr3.1:64684525-64684544 | MS.gene70562:intron | 30.0% | |
| ! | GTAGTGTGCAAAGTATTAAT+TGG | + | chr3.1:64683609-64683628 | None:intergenic | 30.0% |
| ! | TGTGCAAAGTATTAATTGGA+GGG | + | chr3.1:64683605-64683624 | None:intergenic | 30.0% |
| AAAAATGAAAGTCAGTGCAG+AGG | + | chr3.1:64685442-64685461 | None:intergenic | 35.0% | |
| AAGAGTGGCATGACAAATTA+AGG | + | chr3.1:64684642-64684661 | None:intergenic | 35.0% | |
| AAGTTGACAAAACCAGACAA+AGG | - | chr3.1:64682952-64682971 | MS.gene70562:intron | 35.0% | |
| AATTCCATTACACATGGTGA+TGG | + | chr3.1:64684206-64684225 | None:intergenic | 35.0% | |
| AGATGAAGTTGAAGGACTTA+GGG | + | chr3.1:64685059-64685078 | None:intergenic | 35.0% | |
| CTTAAGCTTCCAACTATTTG+TGG | - | chr3.1:64683087-64683106 | MS.gene70562:intron | 35.0% | |
| CTTCTTAGGTTTAGGTATGT+TGG | + | chr3.1:64684040-64684059 | None:intergenic | 35.0% | |
| GAAATTACCTTGATCATCTG+TGG | - | chr3.1:64684971-64684990 | MS.gene70562:intron | 35.0% | |
| GAACTATCAGATGAAGTTGA+AGG | + | chr3.1:64685067-64685086 | None:intergenic | 35.0% | |
| GTAACTTTGTCTCTCTTCTT+AGG | + | chr3.1:64684054-64684073 | None:intergenic | 35.0% | |
| GTAGTAACACCACAAATAGT+TGG | + | chr3.1:64683099-64683118 | None:intergenic | 35.0% | |
| GTCAGATTGTTTGACATTTG+TGG | - | chr3.1:64682918-64682937 | MS.gene70562:intron | 35.0% | |
| GTTTGACATTTGTGGAAGAT+GGG | - | chr3.1:64682926-64682945 | MS.gene70562:intron | 35.0% | |
| TAAGTTACCACAGATGATCA+AGG | + | chr3.1:64684981-64685000 | None:intergenic | 35.0% | |
| TCAACTTCATCTGATAGTTC+AGG | - | chr3.1:64685067-64685086 | MS.gene70562:intron | 35.0% | |
| TGCAATATTATTGCTGTGGT+TGG | + | chr3.1:64684510-64684529 | None:intergenic | 35.0% | |
| TGTTTGACATTTGTGGAAGA+TGG | - | chr3.1:64682925-64682944 | MS.gene70562:intron | 35.0% | |
| TTGTCTCTCTTCTTAGGTTT+AGG | + | chr3.1:64684048-64684067 | None:intergenic | 35.0% | |
| TTTGCATCACTCTCATTTCA+TGG | - | chr3.1:64682790-64682809 | MS.gene70562:CDS | 35.0% | |
| ! | ATCACCATGTGTAATGGAAT+TGG | - | chr3.1:64684205-64684224 | MS.gene70562:intron | 35.0% |
| ! | GTGTGCAAAGTATTAATTGG+AGG | + | chr3.1:64683606-64683625 | None:intergenic | 35.0% |
| ! | TAAGGTGAACAATTTGGAGT+TGG | + | chr3.1:64684624-64684643 | None:intergenic | 35.0% |
| ! | TGTGGTTGGCTAACTAAATA+TGG | + | chr3.1:64684496-64684515 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3.1:64683505-64683524 | None:intergenic | 35.0% |
| !!! | GACACTAATTTTGAAACGGA+GGG | - | chr3.1:64683745-64683764 | MS.gene70562:intron | 35.0% |
| CAGATGAAGTTGAAGGACTT+AGG | + | chr3.1:64685060-64685079 | None:intergenic | 40.0% | |
| CTAGCCAATTCCATTACACA+TGG | + | chr3.1:64684212-64684231 | None:intergenic | 40.0% | |
| GATATGGCAATGTCACCAAA+AGG | - | chr3.1:64685028-64685047 | MS.gene70562:intron | 40.0% | |
| TCACTCTCATTTCATGGAGA+TGG | - | chr3.1:64682796-64682815 | MS.gene70562:CDS | 40.0% | |
| TGTTTGTGTAAGCTGTTAGG+TGG | - | chr3.1:64683018-64683037 | MS.gene70562:intron | 40.0% | |
| TTACCTGAACAAGCACTAAC+AGG | + | chr3.1:64683126-64683145 | None:intergenic | 40.0% | |
| ! | CTCCAATTTTGCTTCCAGAA+GGG | + | chr3.1:64685401-64685420 | None:intergenic | 40.0% |
| ! | GCTAACTAAATATGGTGGAG+AGG | + | chr3.1:64684488-64684507 | None:intergenic | 40.0% |
| ! | GGTTGGCTAACTAAATATGG+TGG | + | chr3.1:64684493-64684512 | None:intergenic | 40.0% |
| !! | GGTAATGCTGCTGATTCTAT+TGG | - | chr3.1:64683039-64683058 | MS.gene70562:intron | 40.0% |
| !!! | CGACACTAATTTTGAAACGG+AGG | - | chr3.1:64683744-64683763 | MS.gene70562:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+TGG | + | chr3.1:64683501-64683520 | None:intergenic | 40.0% |
| ATAGCATCTCCACTCAGTGA+TGG | + | chr3.1:64684868-64684887 | None:intergenic | 45.0% | |
| ATCAAGCATCCATCATCTGC+CGG | + | chr3.1:64682883-64682902 | None:intergenic | 45.0% | |
| CAGTCCATCACCATGTGTAA+TGG | - | chr3.1:64684199-64684218 | MS.gene70562:intron | 45.0% | |
| GAAGGCGGTATCAACAAAGA+AGG | + | chr3.1:64684247-64684266 | None:intergenic | 45.0% | |
| GAATATGGAGACAGAGACAG+TGG | + | chr3.1:64685472-64685491 | None:intergenic | 45.0% | |
| GATGTTGTCCTGAGTTAGCA+GGG | - | chr3.1:64682974-64682993 | MS.gene70562:intron | 45.0% | |
| TCAATCAACCCTGCTAACTC+AGG | + | chr3.1:64682985-64683004 | None:intergenic | 45.0% | |
| TCAGGACAACATCCTTTGTC+TGG | + | chr3.1:64682967-64682986 | None:intergenic | 45.0% | |
| ! | AGCCCTTCTGGAAGCAAAAT+TGG | - | chr3.1:64685396-64685415 | MS.gene70562:CDS | 45.0% |
| ! | CCTCCAATTTTGCTTCCAGA+AGG | + | chr3.1:64685402-64685421 | None:intergenic | 45.0% |
| ! | CCTTCTGGAAGCAAAATTGG+AGG | - | chr3.1:64685399-64685418 | MS.gene70562:CDS | 45.0% |
| ! | GAGTTAGCAGGGTTGATTGA+TGG | - | chr3.1:64682985-64683004 | MS.gene70562:intron | 45.0% |
| !! | ACATGGTGATGGACTGACAT+TGG | + | chr3.1:64684195-64684214 | None:intergenic | 45.0% |
| !! | AAAACTTAAAAATAATAATT+TGG | - | chr3.1:64683936-64683955 | MS.gene70562:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | - | chr3.1:64685221-64685240 | MS.gene70562:CDS | 5.0% |
| CCTCCTGTTAGTGCTTGTTC+AGG | - | chr3.1:64683120-64683139 | MS.gene70562:intron | 50.0% | |
| CCTGAACAAGCACTAACAGG+AGG | + | chr3.1:64683123-64683142 | None:intergenic | 50.0% | |
| GGATGTTGTCCTGAGTTAGC+AGG | - | chr3.1:64682973-64682992 | MS.gene70562:intron | 50.0% | |
| TGCAGAGGCTTGAATGCTTG+AGG | + | chr3.1:64685427-64685446 | None:intergenic | 50.0% | |
| ! | GGACTTAGGGCTGATCCTTT+TGG | + | chr3.1:64685046-64685065 | None:intergenic | 50.0% |
| ! | TGGAGTATCTGCTGCTGCTT+TGG | - | chr3.1:64682816-64682835 | MS.gene70562:CDS | 50.0% |
| !! | GGCAGATGATGGATGCTTGA+TGG | - | chr3.1:64682882-64682901 | MS.gene70562:intron | 50.0% |
| !! | TGCTGCTTTGGCTCAATCAC+CGG | - | chr3.1:64682828-64682847 | MS.gene70562:CDS | 50.0% |
| CATCCATCATCTGCCGGTGA+TGG | + | chr3.1:64682877-64682896 | None:intergenic | 55.0% | |
| GCAGGTGTTCTTAGCCCTTC+TGG | - | chr3.1:64685384-64685403 | MS.gene70562:CDS | 55.0% | |
| GCATCTCCACTCAGTGATGG+AGG | + | chr3.1:64684865-64684884 | None:intergenic | 55.0% | |
| GGAGACAGAGACAGTGGACA+GGG | + | chr3.1:64685466-64685485 | None:intergenic | 55.0% | |
| TCCTTGCCTCCATCACTGAG+TGG | - | chr3.1:64684856-64684875 | MS.gene70562:intron | 55.0% | |
| TGGAGACAGAGACAGTGGAC+AGG | + | chr3.1:64685467-64685486 | None:intergenic | 55.0% | |
| ! | AGTGATGGAGGCAAGGACAC+AGG | + | chr3.1:64684853-64684872 | None:intergenic | 55.0% |
| ! | TCCACTCAGTGATGGAGGCA+AGG | + | chr3.1:64684860-64684879 | None:intergenic | 55.0% |
| ! | TTTGGCTCAATCACCGGCAC+CGG | - | chr3.1:64682834-64682853 | MS.gene70562:CDS | 55.0% |
| AAAACCGCGGTTTCCGGTGC+CGG | + | chr3.1:64682850-64682869 | None:intergenic | 60.0% | |
| GGCGCTAAAACCGCGGTTTC+CGG | + | chr3.1:64682856-64682875 | None:intergenic | 60.0% | |
| ! | CGGTGATGGCGCTAAAACCG+CGG | + | chr3.1:64682863-64682882 | None:intergenic | 60.0% |
| !! | CGCGGTTTTAGCGCCATCAC+CGG | - | chr3.1:64682861-64682880 | MS.gene70562:intron | 60.0% |
| GCGCCATCACCGGCAGATGA+TGG | - | chr3.1:64682871-64682890 | MS.gene70562:intron | 65.0% | |
| ! | ATCACCGGCACCGGAAACCG+CGG | - | chr3.1:64682843-64682862 | MS.gene70562:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64682748 | 64685497 | 64682748 | ID=MS.gene70562 |
| chr3.1 | mRNA | 64682748 | 64685497 | 64682748 | ID=MS.gene70562.t1;Parent=MS.gene70562 |
| chr3.1 | exon | 64685104 | 64685497 | 64685104 | ID=MS.gene70562.t1.exon1;Parent=MS.gene70562.t1 |
| chr3.1 | CDS | 64685104 | 64685497 | 64685104 | ID=cds.MS.gene70562.t1;Parent=MS.gene70562.t1 |
| chr3.1 | exon | 64683350 | 64683406 | 64683350 | ID=MS.gene70562.t1.exon2;Parent=MS.gene70562.t1 |
| chr3.1 | CDS | 64683350 | 64683406 | 64683350 | ID=cds.MS.gene70562.t1;Parent=MS.gene70562.t1 |
| chr3.1 | exon | 64683157 | 64683216 | 64683157 | ID=MS.gene70562.t1.exon3;Parent=MS.gene70562.t1 |
| chr3.1 | CDS | 64683157 | 64683216 | 64683157 | ID=cds.MS.gene70562.t1;Parent=MS.gene70562.t1 |
| chr3.1 | exon | 64682748 | 64682857 | 64682748 | ID=MS.gene70562.t1.exon4;Parent=MS.gene70562.t1 |
| chr3.1 | CDS | 64682748 | 64682857 | 64682748 | ID=cds.MS.gene70562.t1;Parent=MS.gene70562.t1 |
| Gene Sequence |
| Protein sequence |
