AlfalfaGEDB | MS.gene71314

M. sativa cultivar XinJiangDaYe / MS.gene71314

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71314.t1	XP_013464639.1	97.8	322	7	0	1	322	1	322	3.10E-177	630.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71314.t1	A0A072V9E4	97.8	322	7	0	1	322	1	322	2.3e-177	630.9

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050586	MS.gene71314	0.805435	1.34E-49	-1.69E-46
MS.gene057869	MS.gene71314	0.80794	3.95E-50	-1.69E-46
MS.gene059759	MS.gene71314	0.945307	3.90E-104	-1.69E-46
MS.gene060677	MS.gene71314	0.919933	2.42E-87	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71314.t1	MTR_2g078620	97.826	322	7	0	1	322	1	322	0.0	648
MS.gene71314.t1	MTR_2g083910	47.059	102	42	5	225	319	134	230	2.67e-18	82.8
MS.gene71314.t1	MTR_2g083910	47.059	102	42	5	225	319	134	230	5.01e-18	82.4
MS.gene71314.t1	MTR_2g016760	39.053	169	83	5	167	320	66	229	4.12e-17	81.6
MS.gene71314.t1	MTR_8g086820	41.322	121	52	5	216	320	123	240	1.28e-16	78.2
MS.gene71314.t1	MTR_4g080340	40.367	109	47	3	229	319	128	236	6.76e-13	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71314.t1	AT3G15115	30.000	350	169	16	18	319	12	333	7.11e-20	89.0

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Find 57 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATGCCTCTGATAAGTA+AGG	0.533103	2.1:-21970765	None:intergenic
AACTCCTCCTGTTCCAAATT+GGG	0.290556	2.1:+21970803	MS.gene71314:CDS
AAGAGGACCTTACTTATCAG+AGG	0.645280	2.1:+21970758	MS.gene71314:CDS
ACCTTAGAGGTTAACCTTGG+AGG	0.482914	2.1:-21969786	None:intergenic
ACTCCTCCTGTTCCAAATTG+GGG	0.566945	2.1:+21970804	MS.gene71314:CDS
ACTCTAATTGGTGGCATAGA+TGG	0.345119	2.1:-21969495	None:intergenic
AGCTGATTAGTCTTGTTGAA+GGG	0.577448	2.1:-21969395	None:intergenic
AGCTTAGCTAACATAATTCC+TGG	0.370469	2.1:+21970690	MS.gene71314:CDS
AGGATGAACAAAATCACCAT+CGG	0.638726	2.1:-21969454	None:intergenic
AGTACCTTAGAGGTTAACCT+TGG	0.525551	2.1:-21969789	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAAAAAGAGAAGAATGC+AGG	+	chr2.1:21970270-21970289	MS.gene71314:intron	30.0%
AGTTGAAAGCTTAAACAAAG+AGG	+	chr2.1:21970536-21970555	MS.gene71314:CDS	30.0%
ATAGAAGTGATAGCAATAGA+AGG	+	chr2.1:21969634-21969653	MS.gene71314:CDS	30.0%
ATGCAACAATAATACGTGAA+AGG	-	chr2.1:21970354-21970373	None:intergenic	30.0%
ATTTAATATGGCAAGTAGTC+TGG	+	chr2.1:21969933-21969952	MS.gene71314:intron	30.0%
CATAGCATCAGAAATAGAAA+AGG	+	chr2.1:21970143-21970162	MS.gene71314:intron	30.0%
GAAAAATAGAGATGAAAGTG+AGG	+	chr2.1:21970722-21970741	MS.gene71314:CDS	30.0%
GTTGAAAGCTTAAACAAAGA+GGG	+	chr2.1:21970537-21970556	MS.gene71314:CDS	30.0%
TCTTCTTCTTTCACTCTAAT+TGG	-	chr2.1:21969510-21969529	None:intergenic	30.0%
TTGAGTATGAAGAAGTTCAA+GGG	+	chr2.1:21970622-21970641	MS.gene71314:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	21969246	21970902	21969246	ID=MS.gene71314
chr2.1	mRNA	21969246	21970902	21969246	ID=MS.gene71314.t1;Parent=MS.gene71314
chr2.1	exon	21969246	21969806	21969246	ID=MS.gene71314.t1.exon1;Parent=MS.gene71314.t1
chr2.1	CDS	21969246	21969806	21969246	ID=cds.MS.gene71314.t1;Parent=MS.gene71314.t1
chr2.1	exon	21970495	21970902	21970495	ID=MS.gene71314.t1.exon2;Parent=MS.gene71314.t1
chr2.1	CDS	21970495	21970902	21970495	ID=cds.MS.gene71314.t1;Parent=MS.gene71314.t1

Gene Sequence

>MS.gene71314

ATGGATCCAAATGATAATAATAGCTCTTGTGAATCTTCTTTTTGCAAAGATGAAAAAGTGGAAGCAATGAATCTACTTGAAGAGTGTTGGTATTTTGATAACTTGTTAAATATAAAACCAAAGATGTTAAGGTGTCATTCTGATCCTTACCCTTCAACAAGACTAATCAGCTCAGAACTTTTGAAGGATTCATCAGCAAGTAAACCATCCGATGGTGATTTTGTTCATCCTAAGAAGCTGCAAAGAGCACCATCTATGCCACCAATTAGAGTGAAAGAAGAAGAAAAAGATGATAAAAAAGGAAGCAAATTGGTGCATCAAACATCGGATTCTGCTATGCATAAGGCAGGCAGTAAACATCATTGTGCAAAGATGAAAGGACTTGATCATAGAAGTGATAGCAATAGAAGGAAAAGCAAATTGCTAAGAACACCATCTTTGCCTCCAACAATAGGGAGAGAGGAAAAGTTTCAAGAAACTGATTCAAGAATTGGAAGATCCCGAAAACAACCATCGACACCTCCCAATAATGACAACTTGCCTCCAAGGTTAACCTCTAAGGTACTATAAAAATCATCTTGCTTTTATAAAGATCTAAGTAATGTATAGACTTTTTTTTTCGTTTATGATTAAGCGCGTAGGTTTTAAATTGTGATTTGTCGTGCTTCAATATTGCGAAGAATTGTGATTTAATATGGCAAGTAGTCTGGTACGGTTCCAATCACGGTCACGTTGCAGTTACAGGAAATGAAATACATTATGTCGCCTACCCTCTTTTTAAATCATTATGTCACATCCAAGAGTTTATGATTGATATTATGTGCCTAGCACAAAGAAGTAACACCAATTAATACAAATATGGCTAAAAGGCCAAAAATTTTAGCATTTAAGTAAAATCATAGCATCAGAAATAGAAAAGGGCAGAGTAGCACATTTAGCTTGCTGCAACATTTTAAGAAAAGTCATTAGTCCTATCATGCTATGTTCAAATATAGAGCAATGTTATTTCTTACAAATGATTTTTACAAAAAAAGAGAAGAATGCAGGAATATAGGATATTTAACCAATCATATTTTGATTGATCATACGCGAGAAAGCGTCACTTCCTTTCACGTATTATTGTTGCATTTCTTGATACTCCTTCGTAACAATAAGTGATATTCTTGAATATAAGTACTTCAAATTTCAAATTGATTTGAATGTTTATGAAGCGAACTCATTGTATATGTTTTGCAATGCTTGATGACAGAGTTGCAGCATTCCAAGAAGTAGACCGGCTAAAAACATCGAAGTTGAAAGCTTAAACAAAGAGGGTATTTTGGAGATGAGGAGAAAGGTCCTAAATCAGAAAACAATAAGGAGAAGCCTAAGTGATCTTGAGTATGAAGAAGTTCAAGGGTTCAAGGATTTGGGATTCTCATTTGAGAAAGAAGCTTTAAGTCCAAGCTTAGCTAACATAATTCCTGGTTTACAAGAGAAAAATAGAGATGAAAGTGAGGAAGATAAAGCAGCAAGAGGACCTTACTTATCAGAGGCATGGTTGGTGCAAAGTTGTGCAACTCCTCCTGTTCCAAATTGGGGAAATAAGATGTCTGCAGATGACATGAAAAAACATATCAAGTTTTGGGCTAGGGCTGTGGCTTCAACTAAATGTTGA

Protein sequence

>MS.gene71314.t1

MDPNDNNSSCESSFCKDEKVEAMNLLEECWYFDNLLNIKPKMLRCHSDPYPSTRLISSELLKDSSASKPSDGDFVHPKKLQRAPSMPPIRVKEEEKDDKKGSKLVHQTSDSAMHKAGSKHHCAKMKGLDHRSDSNRRKSKLLRTPSLPPTIGREEKFQETDSRIGRSRKQPSTPPNNDNLPPRLTSKSCSIPRSRPAKNIEVESLNKEGILEMRRKVLNQKTIRRSLSDLEYEEVQGFKDLGFSFEKEALSPSLANIIPGLQEKNRDESEEDKAARGPYLSEAWLVQSCATPPVPNWGNKMSADDMKKHIKFWARAVASTKC