Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060677.t1 | XP_013464639.1 | 97.8 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 1.40E-177 | 632.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060677.t1 | A0A072V9E4 | 97.8 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 1.0e-177 | 632.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene060677 | 0.8092 | 2.13E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene060677 | 0.804021 | 2.64E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene060677 | 0.83002 | 3.71E-55 | -1.69E-46 |
| MS.gene059759 | MS.gene060677 | 0.885539 | 7.46E-72 | -1.69E-46 |
| MS.gene060677 | MS.gene061947 | 0.801557 | 8.51E-49 | -1.69E-46 |
| MS.gene060677 | MS.gene067234 | 0.800132 | 1.66E-48 | -1.69E-46 |
| MS.gene060677 | MS.gene21911 | 0.82955 | 4.84E-55 | -1.69E-46 |
| MS.gene060677 | MS.gene28835 | 0.814174 | 1.76E-51 | -1.69E-46 |
| MS.gene060677 | MS.gene28854 | 0.81105 | 8.50E-51 | -1.69E-46 |
| MS.gene060677 | MS.gene34180 | 0.802067 | 6.69E-49 | -1.69E-46 |
| MS.gene060677 | MS.gene46250 | 0.804509 | 2.09E-49 | -1.69E-46 |
| MS.gene060677 | MS.gene58372 | 0.883805 | 3.29E-71 | -1.69E-46 |
| MS.gene060677 | MS.gene64417 | 0.808665 | 2.77E-50 | -1.69E-46 |
| MS.gene060677 | MS.gene65718 | 0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene060677 | MS.gene71314 | 0.919933 | 2.42E-87 | -1.69E-46 |
| MS.gene060677 | MS.gene74243 | 0.802918 | 4.47E-49 | -1.69E-46 |
| MS.gene060677 | MS.gene90525 | 0.803425 | 3.51E-49 | -1.69E-46 |
| MS.gene060677 | MS.gene96073 | 0.810287 | 1.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060677.t1 | MTR_2g078620 | 97.826 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 0.0 | 646 |
| MS.gene060677.t1 | MTR_2g083910 | 47.059 | 102 | 42 | 5 | 225 | 319 | 134 | 230 | 3.75e-18 | 82.4 |
| MS.gene060677.t1 | MTR_2g083910 | 47.059 | 102 | 42 | 5 | 225 | 319 | 134 | 230 | 5.93e-18 | 82.4 |
| MS.gene060677.t1 | MTR_2g016760 | 39.053 | 169 | 83 | 5 | 167 | 320 | 66 | 229 | 4.28e-17 | 81.6 |
| MS.gene060677.t1 | MTR_8g086820 | 41.322 | 121 | 52 | 5 | 216 | 320 | 123 | 240 | 1.55e-16 | 78.2 |
| MS.gene060677.t1 | MTR_4g080340 | 40.367 | 109 | 47 | 3 | 229 | 319 | 128 | 236 | 7.30e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060677.t1 | AT3G15115 | 30.836 | 347 | 170 | 16 | 18 | 319 | 12 | 333 | 6.44e-20 | 89.4 |
Find 58 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATCTTATTTCCCCAATT+TGG | 0.135591 | 2.2:-16136103 | None:intergenic |
| TCTTCTTCTTTCACTCTAAT+TGG | 0.176697 | 2.2:-16134793 | None:intergenic |
| CAACTCCTCCTGTTCCAAAT+TGG | 0.187842 | 2.2:+16136089 | MS.gene060677:CDS |
| CTTAAACAAAGAGGGTATTT+TGG | 0.192411 | 2.2:+16135832 | MS.gene060677:CDS |
| TGGAGGCAAGTTGTCATTAT+TGG | 0.201109 | 2.2:-16135055 | None:intergenic |
| AGTTCAAGGGTTCAAGGATT+TGG | 0.219405 | 2.2:+16135922 | MS.gene060677:CDS |
| GGTGCTCTTTGCAGCTTCTT+AGG | 0.254314 | 2.2:-16134760 | None:intergenic |
| GAATGACACCTTAACATCTT+TGG | 0.264564 | 2.2:-16134649 | None:intergenic |
| CAAGAAACTGATTCAAGAAT+TGG | 0.268407 | 2.2:+16135003 | MS.gene060677:CDS |
| AACTCCTCCTGTTCCAAATT+GGG | 0.290556 | 2.2:+16136090 | MS.gene060677:CDS |
| GTTCAAGGGTTCAAGGATTT+GGG | 0.318307 | 2.2:+16135923 | MS.gene060677:CDS |
| GGAGGCAAGTTGTCATTATT+GGG | 0.324183 | 2.2:-16135054 | None:intergenic |
| CAAGAGCTATTATTATCATT+TGG | 0.336403 | 2.2:-16134538 | None:intergenic |
| ACTCTAATTGGTGGCATAGA+TGG | 0.345119 | 2.2:-16134781 | None:intergenic |
| CCATCTTTGCCTCCAACAAT+AGG | 0.347224 | 2.2:+16134964 | MS.gene060677:CDS |
| AGCTTAGCTAACATAATTCC+TGG | 0.370469 | 2.2:+16135977 | MS.gene060677:CDS |
| GCCTCCAAGGTTAACCTCTA+AGG | 0.388438 | 2.2:+16135071 | MS.gene060677:CDS |
| TCCTCTCTCCCTATTGTTGG+AGG | 0.400398 | 2.2:-16134973 | None:intergenic |
| TCCTAAATCAGAAAACAATA+AGG | 0.414045 | 2.2:+16135870 | MS.gene060677:CDS |
| TTATTTCCCCAATTTGGAAC+AGG | 0.427610 | 2.2:-16136097 | None:intergenic |
| ATATAAAACCAAAGATGTTA+AGG | 0.433545 | 2.2:+16134641 | MS.gene060677:CDS |
| GGAATTATGTTAGCTAAGCT+TGG | 0.440726 | 2.2:-16135974 | None:intergenic |
| TCTTCTTTCACTCTAATTGG+TGG | 0.448745 | 2.2:-16134790 | None:intergenic |
| CCTATTGTTGGAGGCAAAGA+TGG | 0.449300 | 2.2:-16134964 | None:intergenic |
| CTTGAGTATGAAGAAGTTCA+AGG | 0.460785 | 2.2:+16135908 | MS.gene060677:CDS |
| ATAGAAGTGATAGCAATAGA+AGG | 0.463972 | 2.2:+16134920 | MS.gene060677:CDS |
| ATTAGTCTTGTTGAAGGGTA+AGG | 0.475567 | 2.2:-16134676 | None:intergenic |
| CATCTTTGCCTCCAACAATA+GGG | 0.480386 | 2.2:+16134965 | MS.gene060677:CDS |
| ACCTTAGAGGTTAACCTTGG+AGG | 0.482914 | 2.2:-16135072 | None:intergenic |
| GAGCTGATTAGTCTTGTTGA+AGG | 0.486253 | 2.2:-16134682 | None:intergenic |
| CATCGGATTCTGCTATGCAC+TGG | 0.495201 | 2.2:+16134854 | MS.gene060677:CDS |
| TGAAGAAGTTCAAGGGTTCA+AGG | 0.522733 | 2.2:+16135916 | MS.gene060677:CDS |
| AGTACCTTAGAGGTTAACCT+TGG | 0.525551 | 2.2:-16135075 | None:intergenic |
| AACCATGCCTCTGATAAGTA+AGG | 0.533103 | 2.2:-16136052 | None:intergenic |
| TCATTATTGGGAGGTGTCGA+TGG | 0.539813 | 2.2:-16135042 | None:intergenic |
| ATAATGACAACTTGCCTCCA+AGG | 0.544515 | 2.2:+16135058 | MS.gene060677:CDS |
| TGAATCTACTTGAAGAGTGT+TGG | 0.552194 | 2.2:+16134599 | MS.gene060677:CDS |
| TTACTTATCAGAGGCATGGT+TGG | 0.560586 | 2.2:+16136054 | MS.gene060677:CDS |
| CATCATTGTGCAAAGATGAA+AGG | 0.561895 | 2.2:+16134889 | MS.gene060677:CDS |
| ACTCCTCCTGTTCCAAATTG+GGG | 0.566945 | 2.2:+16136091 | MS.gene060677:CDS |
| ATCGGATTCTGCTATGCACT+GGG | 0.568531 | 2.2:+16134855 | MS.gene060677:CDS |
| CTTCATACTCAAGATCACTT+AGG | 0.571003 | 2.2:-16135898 | None:intergenic |
| CAGCATTCCAAGAAGTAGAC+CGG | 0.572646 | 2.2:+16135787 | MS.gene060677:CDS |
| GACCTTACTTATCAGAGGCA+TGG | 0.573969 | 2.2:+16136050 | MS.gene060677:CDS |
| GTTGAAAGCTTAAACAAAGA+GGG | 0.576048 | 2.2:+16135824 | MS.gene060677:CDS |
| AGCTGATTAGTCTTGTTGAA+GGG | 0.577448 | 2.2:-16134681 | None:intergenic |
| TTTCCCCAATTTGGAACAGG+AGG | 0.577483 | 2.2:-16136094 | None:intergenic |
| GATTCTGCTATGCACTGGGC+AGG | 0.577944 | 2.2:+16134859 | MS.gene060677:CDS |
| GCCTCCAACAATAGGGAGAG+AGG | 0.599344 | 2.2:+16134972 | MS.gene060677:CDS |
| AGTTGAAAGCTTAAACAAAG+AGG | 0.608171 | 2.2:+16135823 | MS.gene060677:CDS |
| TTGAGTATGAAGAAGTTCAA+GGG | 0.610506 | 2.2:+16135909 | MS.gene060677:CDS |
| GAGGAAGATAAAGCAGCAAG+AGG | 0.618815 | 2.2:+16136028 | MS.gene060677:CDS |
| AAAATTGGTGCATCAAACAT+CGG | 0.619857 | 2.2:+16134837 | MS.gene060677:CDS |
| GGCAAGTTGTCATTATTGGG+AGG | 0.626871 | 2.2:-16135051 | None:intergenic |
| AGGATGAACAAAATCACCAT+CGG | 0.638726 | 2.2:-16134740 | None:intergenic |
| AAGAGGACCTTACTTATCAG+AGG | 0.645280 | 2.2:+16136045 | MS.gene060677:CDS |
| TGAACAAAATCACCATCGGA+TGG | 0.647374 | 2.2:-16134736 | None:intergenic |
| TCAGCAAGTAAACCATCCGA+TGG | 0.664328 | 2.2:+16134724 | MS.gene060677:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTAAATGCTAAAATTATT+TGG | - | chr2.2:16135405-16135424 | None:intergenic | 15.0% |
| !! | AACACCAATTAATACAAATA+TGG | + | chr2.2:16135371-16135390 | MS.gene060677:intron | 20.0% |
| !! | ATATAAAACCAAAGATGTTA+AGG | + | chr2.2:16134641-16134660 | MS.gene060677:CDS | 20.0% |
| !! | ATGATCAATCAAAATATGAT+TGG | - | chr2.2:16135599-16135618 | None:intergenic | 20.0% |
| !! | GAAGAAAAAGATGATAAAAA+AGG | + | chr2.2:16134811-16134830 | MS.gene060677:CDS | 20.0% |
| !! | GACATAATGATTTAAAAAGA+GGG | - | chr2.2:16135304-16135323 | None:intergenic | 20.0% |
| !! | TAATATCAATCATAAACTCT+TGG | - | chr2.2:16135331-16135350 | None:intergenic | 20.0% |
| !! | TGACATAATGATTTAAAAAG+AGG | - | chr2.2:16135305-16135324 | None:intergenic | 20.0% |
| !! | TGATAAAAAAGGAAGAAAAT+TGG | + | chr2.2:16134822-16134841 | MS.gene060677:CDS | 20.0% |
| !! | TTAATACAAATATGGCTAAA+AGG | + | chr2.2:16135379-16135398 | MS.gene060677:intron | 20.0% |
| !! | TTAGCCATATTTGTATTAAT+TGG | - | chr2.2:16135378-16135397 | None:intergenic | 20.0% |
| !!! | GAAAAAACATATCAAGTTTT+GGG | + | chr2.2:16136138-16136157 | MS.gene060677:CDS | 20.0% |
| !!! | TGAAAAAACATATCAAGTTT+TGG | + | chr2.2:16136137-16136156 | MS.gene060677:CDS | 20.0% |
| ! | ATAGCATCAGAAATAGAAAA+GGG | + | chr2.2:16135431-16135450 | MS.gene060677:intron | 25.0% |
| ! | ATATTTGAACATAGCATGAT+AGG | - | chr2.2:16135506-16135525 | None:intergenic | 25.0% |
| ! | CAAGAGCTATTATTATCATT+TGG | - | chr2.2:16134541-16134560 | None:intergenic | 25.0% |
| ! | CGAAGAATTGTGATTTAATA+TGG | + | chr2.2:16135207-16135226 | MS.gene060677:intron | 25.0% |
| ! | TAATGATTTAAAAAGAGGGT+AGG | - | chr2.2:16135300-16135319 | None:intergenic | 25.0% |
| ! | TCCTAAATCAGAAAACAATA+AGG | + | chr2.2:16135870-16135889 | MS.gene060677:CDS | 25.0% |
| !! | TCCTTATTGTTTTCTGATTT+AGG | - | chr2.2:16135874-16135893 | None:intergenic | 25.0% |
| !! | TGATTTTTATAGTACCTTAG+AGG | - | chr2.2:16135088-16135107 | None:intergenic | 25.0% |
| !! | TTTTTGCAAAGATGAAAAAG+TGG | + | chr2.2:16134570-16134589 | MS.gene060677:CDS | 25.0% |
| !!! | TATTAATTGGTGTTACTTCT+TGG | - | chr2.2:16135365-16135384 | None:intergenic | 25.0% |
| AAAATTGGTGCATCAAACAT+CGG | + | chr2.2:16134837-16134856 | MS.gene060677:CDS | 30.0% | |
| AATATCGCTTATTGTTACGA+AGG | - | chr2.2:16135675-16135694 | None:intergenic | 30.0% | |
| ACAAAAAAAGAGAAGAATGC+AGG | + | chr2.2:16135557-16135576 | MS.gene060677:intron | 30.0% | |
| AGTTGAAAGCTTAAACAAAG+AGG | + | chr2.2:16135823-16135842 | MS.gene060677:CDS | 30.0% | |
| ATAGAAGTGATAGCAATAGA+AGG | + | chr2.2:16134920-16134939 | MS.gene060677:CDS | 30.0% | |
| ATGCAACAATAATACGTGAA+AGG | - | chr2.2:16135641-16135660 | None:intergenic | 30.0% | |
| ATTTAATATGGCAAGTAGTC+TGG | + | chr2.2:16135219-16135238 | MS.gene060677:intron | 30.0% | |
| CATAGCATCAGAAATAGAAA+AGG | + | chr2.2:16135430-16135449 | MS.gene060677:intron | 30.0% | |
| GAAAAATAGAGATGAAAGTG+AGG | + | chr2.2:16136009-16136028 | MS.gene060677:CDS | 30.0% | |
| GTTGAAAGCTTAAACAAAGA+GGG | + | chr2.2:16135824-16135843 | MS.gene060677:CDS | 30.0% | |
| TCTTCTTCTTTCACTCTAAT+TGG | - | chr2.2:16134796-16134815 | None:intergenic | 30.0% | |
| TTGAGTATGAAGAAGTTCAA+GGG | + | chr2.2:16135909-16135928 | MS.gene060677:CDS | 30.0% | |
| ! | CAAGAAACTGATTCAAGAAT+TGG | + | chr2.2:16135003-16135022 | MS.gene060677:CDS | 30.0% |
| !!! | CTTAAACAAAGAGGGTATTT+TGG | + | chr2.2:16135832-16135851 | MS.gene060677:CDS | 30.0% |
| AGAGAAGAATGCAGGAATAT+AGG | + | chr2.2:16135565-16135584 | MS.gene060677:intron | 35.0% | |
| AGCTTAGCTAACATAATTCC+TGG | + | chr2.2:16135977-16135996 | MS.gene060677:CDS | 35.0% | |
| AGGATGAACAAAATCACCAT+CGG | - | chr2.2:16134743-16134762 | None:intergenic | 35.0% | |
| CATCATTGTGCAAAGATGAA+AGG | + | chr2.2:16134889-16134908 | MS.gene060677:CDS | 35.0% | |
| CTTCATACTCAAGATCACTT+AGG | - | chr2.2:16135901-16135920 | None:intergenic | 35.0% | |
| CTTGAGTATGAAGAAGTTCA+AGG | + | chr2.2:16135908-16135927 | MS.gene060677:CDS | 35.0% | |
| GAATGACACCTTAACATCTT+TGG | - | chr2.2:16134652-16134671 | None:intergenic | 35.0% | |
| GGAATTATGTTAGCTAAGCT+TGG | - | chr2.2:16135977-16135996 | None:intergenic | 35.0% | |
| TCTTCTTTCACTCTAATTGG+TGG | - | chr2.2:16134793-16134812 | None:intergenic | 35.0% | |
| ! | AATCAGCTCAGAACTTTTGA+AGG | + | chr2.2:16134696-16134715 | MS.gene060677:CDS | 35.0% |
| ! | GACATCTTATTTCCCCAATT+TGG | - | chr2.2:16136106-16136125 | None:intergenic | 35.0% |
| ! | TGAATCTACTTGAAGAGTGT+TGG | + | chr2.2:16134599-16134618 | MS.gene060677:CDS | 35.0% |
| ! | TTATTTCCCCAATTTGGAAC+AGG | - | chr2.2:16136100-16136119 | None:intergenic | 35.0% |
| !! | AGCTGATTAGTCTTGTTGAA+GGG | - | chr2.2:16134684-16134703 | None:intergenic | 35.0% |
| !! | ATTAGTCTTGTTGAAGGGTA+AGG | - | chr2.2:16134679-16134698 | None:intergenic | 35.0% |
| !! | CTATTTTTCTCTTGCAAACC+AGG | - | chr2.2:16135998-16136017 | None:intergenic | 35.0% |
| !! | TATTTTGGAGATGAGGAGAA+AGG | + | chr2.2:16135847-16135866 | MS.gene060677:CDS | 35.0% |
| !!! | TCAACTTCGATGTTTTTAGC+CGG | - | chr2.2:16135809-16135828 | None:intergenic | 35.0% |
| AACCATGCCTCTGATAAGTA+AGG | - | chr2.2:16136055-16136074 | None:intergenic | 40.0% | |
| AACTCCTCCTGTTCCAAATT+GGG | + | chr2.2:16136090-16136109 | MS.gene060677:CDS | 40.0% | |
| AAGAGGACCTTACTTATCAG+AGG | + | chr2.2:16136045-16136064 | MS.gene060677:CDS | 40.0% | |
| AGTACCTTAGAGGTTAACCT+TGG | - | chr2.2:16135078-16135097 | None:intergenic | 40.0% | |
| AGTTCAAGGGTTCAAGGATT+TGG | + | chr2.2:16135922-16135941 | MS.gene060677:CDS | 40.0% | |
| ATAATGACAACTTGCCTCCA+AGG | + | chr2.2:16135058-16135077 | MS.gene060677:CDS | 40.0% | |
| ATATGGCAAGTAGTCTGGTA+CGG | + | chr2.2:16135224-16135243 | MS.gene060677:intron | 40.0% | |
| CATCTTTGCCTCCAACAATA+GGG | + | chr2.2:16134965-16134984 | MS.gene060677:CDS | 40.0% | |
| GGAGGCAAGTTGTCATTATT+GGG | - | chr2.2:16135057-16135076 | None:intergenic | 40.0% | |
| GTTCAAGGGTTCAAGGATTT+GGG | + | chr2.2:16135923-16135942 | MS.gene060677:CDS | 40.0% | |
| TCGTTTATGATTAAGCGCGT+AGG | + | chr2.2:16135151-16135170 | MS.gene060677:intron | 40.0% | |
| TGAACAAAATCACCATCGGA+TGG | - | chr2.2:16134739-16134758 | None:intergenic | 40.0% | |
| TGAAGAAGTTCAAGGGTTCA+AGG | + | chr2.2:16135916-16135935 | MS.gene060677:CDS | 40.0% | |
| TGGAGGCAAGTTGTCATTAT+TGG | - | chr2.2:16135058-16135077 | None:intergenic | 40.0% | |
| ! | ACTCTAATTGGTGGCATAGA+TGG | - | chr2.2:16134784-16134803 | None:intergenic | 40.0% |
| ! | TTACTTATCAGAGGCATGGT+TGG | + | chr2.2:16136054-16136073 | MS.gene060677:CDS | 40.0% |
| ! | TTTTCCTCTCTCCCTATTGT+TGG | - | chr2.2:16134979-16134998 | None:intergenic | 40.0% |
| !! | GAGCTGATTAGTCTTGTTGA+AGG | - | chr2.2:16134685-16134704 | None:intergenic | 40.0% |
| !! | TTTTTAGCCGGTCTACTTCT+TGG | - | chr2.2:16135797-16135816 | None:intergenic | 40.0% |
| !!! | AAGAGGGTATTTTGGAGATG+AGG | + | chr2.2:16135840-16135859 | MS.gene060677:CDS | 40.0% |
| ACCTTAGAGGTTAACCTTGG+AGG | - | chr2.2:16135075-16135094 | None:intergenic | 45.0% | |
| ACTCCTCCTGTTCCAAATTG+GGG | + | chr2.2:16136091-16136110 | MS.gene060677:CDS | 45.0% | |
| ATCGGATTCTGCTATGCACT+GGG | + | chr2.2:16134855-16134874 | MS.gene060677:CDS | 45.0% | |
| CAACTCCTCCTGTTCCAAAT+TGG | + | chr2.2:16136089-16136108 | MS.gene060677:CDS | 45.0% | |
| CAGCATTCCAAGAAGTAGAC+CGG | + | chr2.2:16135787-16135806 | MS.gene060677:CDS | 45.0% | |
| CCATCTTTGCCTCCAACAAT+AGG | + | chr2.2:16134964-16134983 | MS.gene060677:CDS | 45.0% | |
| CCTATTGTTGGAGGCAAAGA+TGG | - | chr2.2:16134967-16134986 | None:intergenic | 45.0% | |
| GACCTTACTTATCAGAGGCA+TGG | + | chr2.2:16136050-16136069 | MS.gene060677:CDS | 45.0% | |
| GAGGAAGATAAAGCAGCAAG+AGG | + | chr2.2:16136028-16136047 | MS.gene060677:CDS | 45.0% | |
| GGCAAGTTGTCATTATTGGG+AGG | - | chr2.2:16135054-16135073 | None:intergenic | 45.0% | |
| TCAGCAAGTAAACCATCCGA+TGG | + | chr2.2:16134724-16134743 | MS.gene060677:CDS | 45.0% | |
| ! | TTTCCCCAATTTGGAACAGG+AGG | - | chr2.2:16136097-16136116 | None:intergenic | 45.0% |
| !! | TCATTATTGGGAGGTGTCGA+TGG | - | chr2.2:16135045-16135064 | None:intergenic | 45.0% |
| !! | TGGTGTTACTTCTTGGTGCT+AGG | - | chr2.2:16135358-16135377 | None:intergenic | 45.0% |
| !!! | AGGTGTCGATGGTTGTTTTC+GGG | - | chr2.2:16135034-16135053 | None:intergenic | 45.0% |
| !!! | GAGGTGTCGATGGTTGTTTT+CGG | - | chr2.2:16135035-16135054 | None:intergenic | 45.0% |
| AACTGCAACGTGACCGTGAT+TGG | - | chr2.2:16135252-16135271 | None:intergenic | 50.0% | |
| CATCGGATTCTGCTATGCAC+TGG | + | chr2.2:16134854-16134873 | MS.gene060677:CDS | 50.0% | |
| GCCTCCAAGGTTAACCTCTA+AGG | + | chr2.2:16135071-16135090 | MS.gene060677:CDS | 50.0% | |
| GGTGCTCTTTGCAGCTTCTT+AGG | - | chr2.2:16134763-16134782 | None:intergenic | 50.0% | |
| GTCTGGTACGGTTCCAATCA+CGG | + | chr2.2:16135236-16135255 | MS.gene060677:intron | 50.0% | |
| TCCTCTCTCCCTATTGTTGG+AGG | - | chr2.2:16134976-16134995 | None:intergenic | 50.0% | |
| CACGGTCACGTTGCAGTTAC+AGG | + | chr2.2:16135254-16135273 | MS.gene060677:intron | 55.0% | |
| GATTCTGCTATGCACTGGGC+AGG | + | chr2.2:16134859-16134878 | MS.gene060677:CDS | 55.0% | |
| GCCTCCAACAATAGGGAGAG+AGG | + | chr2.2:16134972-16134991 | MS.gene060677:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 16134532 | 16136189 | 16134532 | ID=MS.gene060677 |
| chr2.2 | mRNA | 16134532 | 16136189 | 16134532 | ID=MS.gene060677.t1;Parent=MS.gene060677 |
| chr2.2 | exon | 16134532 | 16135092 | 16134532 | ID=MS.gene060677.t1.exon1;Parent=MS.gene060677.t1 |
| chr2.2 | CDS | 16134532 | 16135092 | 16134532 | ID=cds.MS.gene060677.t1;Parent=MS.gene060677.t1 |
| chr2.2 | exon | 16135782 | 16136189 | 16135782 | ID=MS.gene060677.t1.exon2;Parent=MS.gene060677.t1 |
| chr2.2 | CDS | 16135782 | 16136189 | 16135782 | ID=cds.MS.gene060677.t1;Parent=MS.gene060677.t1 |
| Gene Sequence |
| Protein sequence |