AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71399

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71399.t1 MTR_5g017790 95.604 546 24 0 1 546 1 546 0.0 1032
MS.gene71399.t1 MTR_5g017790 95.880 534 22 0 13 546 1 534 0.0 1012
MS.gene71399.t1 MTR_5g017790 94.146 410 24 0 1 410 1 410 0.0 744
MS.gene71399.t1 MTR_8g079840 67.833 600 136 8 1 546 1 597 0.0 720
MS.gene71399.t1 MTR_8g079840 65.868 501 114 8 1 447 1 498 0.0 550
MS.gene71399.t1 MTR_3g101340 53.195 532 221 12 25 544 22 537 3.28e-166 483
MS.gene71399.t1 MTR_3g101340 53.283 533 220 13 25 544 47 563 1.91e-165 481
MS.gene71399.t1 MTR_3g101340 52.407 540 221 12 25 544 47 570 8.64e-165 480
MS.gene71399.t1 MTR_1g021040 53.333 540 210 12 33 543 18 544 9.17e-160 466
MS.gene71399.t1 MTR_4g058015 31.092 595 305 15 33 544 117 689 1.06e-77 258
MS.gene71399.t1 MTR_5g079910 31.327 565 291 12 20 544 2 509 7.72e-73 241
MS.gene71399.t1 MTR_8g078760 25.125 601 365 15 10 544 39 620 1.76e-43 164
MS.gene71399.t1 MTR_5g012790 25.362 552 328 13 28 543 79 582 7.15e-41 156
MS.gene71399.t1 MTR_5g018820 24.103 585 377 9 12 544 49 618 2.32e-40 155
MS.gene71399.t1 MTR_4g068920 26.121 513 321 10 83 544 123 628 8.28e-34 136
MS.gene71399.t1 MTR_5g079910 26.238 404 206 10 20 385 2 351 1.30e-22 100
MS.gene71399.t1 MTR_8g078760 22.925 506 310 14 10 449 39 530 4.74e-22 100
MS.gene71399.t1 MTR_3g073590 32.461 191 116 6 310 494 576 759 7.83e-18 87.8
MS.gene71399.t1 MTR_5g061340 29.208 202 134 5 310 507 749 945 4.22e-17 85.5
MS.gene71399.t1 MTR_8g033290 29.143 175 117 4 332 503 418 588 3.43e-14 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71399.t1 AT4G37080 57.550 596 190 10 6 546 23 610 0.0 622
MS.gene71399.t1 AT4G37080 57.550 596 190 10 6 546 23 610 0.0 622
MS.gene71399.t1 AT4G37080 57.770 592 187 10 10 546 14 597 0.0 620
MS.gene71399.t1 AT4G37080 54.930 497 161 10 6 447 23 511 3.49e-159 464
MS.gene71399.t1 AT5G42690 51.052 523 211 12 32 543 22 510 8.91e-150 440
MS.gene71399.t1 AT5G42690 51.052 523 211 12 32 543 49 537 2.55e-149 439
MS.gene71399.t1 AT5G42690 51.052 523 211 12 32 543 49 537 2.55e-149 439
MS.gene71399.t1 AT5G42690 51.149 522 211 12 32 543 49 536 3.41e-149 439
MS.gene71399.t1 AT5G42690 50.867 519 210 12 36 543 1 485 2.94e-147 432
MS.gene71399.t1 AT2G39690 39.450 327 161 7 249 544 96 416 2.83e-71 234
MS.gene71399.t1 AT2G39690 32.413 543 298 15 34 544 18 523 5.15e-71 236
MS.gene71399.t1 AT2G39690 32.707 532 289 15 45 544 3 497 6.12e-71 236
MS.gene71399.t1 AT2G39690 32.765 528 293 14 45 544 3 496 1.05e-70 235
MS.gene71399.t1 AT2G39690 32.468 539 302 14 34 544 18 522 1.14e-70 236
MS.gene71399.t1 AT3G12540 30.426 493 281 9 83 544 42 503 1.65e-65 221
MS.gene71399.t1 AT3G12540 28.468 555 316 11 31 544 56 570 1.66e-61 213
MS.gene71399.t1 AT5G60720 34.844 353 170 9 249 544 340 689 2.13e-54 195
MS.gene71399.t1 AT1G16750 39.231 260 143 5 295 543 271 526 9.77e-49 177
MS.gene71399.t1 AT5G47380 26.046 526 343 11 35 543 33 529 1.61e-45 168
MS.gene71399.t1 AT5G47380 26.128 532 335 12 35 543 89 585 2.57e-45 169
MS.gene71399.t1 AT5G47380 26.046 526 343 11 35 543 89 585 2.69e-45 169
MS.gene71399.t1 AT3G13000 27.544 570 307 17 35 543 49 573 1.81e-44 166
MS.gene71399.t1 AT3G13000 27.544 570 307 17 35 543 49 573 1.81e-44 166
MS.gene71399.t1 AT3G13000 27.544 570 307 17 35 543 20 544 2.11e-44 165
MS.gene71399.t1 AT2G39690 30.405 444 242 14 34 447 18 424 1.95e-39 149
MS.gene71399.t1 AT2G39690 30.455 440 246 13 34 447 18 423 3.15e-39 149
MS.gene71399.t1 AT2G23700 30.372 349 201 8 232 544 359 701 6.00e-37 146
MS.gene71399.t1 AT3G18900 32.278 316 181 11 245 544 232 530 9.74e-33 132
MS.gene71399.t1 AT3G18900 31.629 313 187 9 245 544 227 525 1.00e-32 132
MS.gene71399.t1 AT5G66600 25.391 575 323 19 37 544 73 608 1.25e-32 132
MS.gene71399.t1 AT5G66600 25.391 575 323 19 37 544 73 608 1.25e-32 132
MS.gene71399.t1 AT5G66600 25.391 575 323 19 37 544 73 608 1.25e-32 132
MS.gene71399.t1 AT5G66600 25.391 575 323 19 37 544 73 608 1.25e-32 132
MS.gene71399.t1 AT5G66600 25.391 575 323 19 37 544 73 608 1.25e-32 132
MS.gene71399.t1 AT5G66600 24.912 566 337 16 37 544 19 554 1.34e-32 132
MS.gene71399.t1 AT5G66600 25.565 575 322 19 37 544 53 588 1.63e-32 132
MS.gene71399.t1 AT3G18900 31.629 313 187 9 245 544 151 449 2.23e-32 129
MS.gene71399.t1 AT3G18900 31.629 313 187 9 245 544 151 449 2.23e-32 129
MS.gene71399.t1 AT1G76620 28.228 333 193 9 249 544 193 516 1.66e-30 125
MS.gene71399.t1 AT2G39690 29.167 384 215 12 45 402 3 355 1.03e-29 120
MS.gene71399.t1 AT5G47380 25.571 438 269 11 35 450 89 491 4.34e-29 121
MS.gene71399.t1 AT1G43020 29.450 309 183 12 248 545 151 435 8.66e-29 119
MS.gene71399.t1 AT5G47380 25.576 434 266 11 35 446 89 487 2.44e-28 119
MS.gene71399.t1 AT1G21060 27.445 317 205 5 247 546 197 505 1.08e-27 117
MS.gene71399.t1 AT1G21060 27.445 317 205 5 247 546 185 493 1.16e-27 117
MS.gene71399.t1 AT1G16750 41.964 112 63 1 295 404 271 382 2.04e-21 97.1
MS.gene71399.t1 AT5G66600 25.314 478 254 17 37 447 73 514 8.55e-20 93.2
MS.gene71399.t1 AT5G66600 25.314 478 254 17 37 447 73 514 8.55e-20 93.2
MS.gene71399.t1 AT5G66600 25.314 478 254 17 37 447 73 514 8.55e-20 93.2
MS.gene71399.t1 AT5G66600 25.314 478 254 17 37 447 73 514 8.55e-20 93.2
MS.gene71399.t1 AT4G08550 27.468 233 159 4 310 540 411 635 2.72e-19 92.0
MS.gene71399.t1 AT4G08550 27.468 233 159 4 310 540 465 689 3.67e-19 91.7
MS.gene71399.t1 AT3G11920 31.000 200 133 5 306 503 398 594 6.97e-18 87.4
MS.gene71399.t1 AT3G18900 31.776 214 126 7 245 447 232 436 3.60e-16 81.6
MS.gene71399.t1 AT1G43020 29.327 208 120 9 248 446 151 340 1.05e-15 79.3
MS.gene71399.t1 AT5G66600 24.823 423 225 15 37 399 73 462 3.34e-15 78.6
MS.gene71399.t1 AT5G66600 24.823 423 225 15 37 399 73 462 3.34e-15 78.6
MS.gene71399.t1 AT5G66600 24.823 423 225 15 37 399 73 462 3.34e-15 78.6
MS.gene71399.t1 AT5G66600 25.059 423 224 15 37 399 19 408 4.15e-15 78.2
MS.gene71399.t1 AT3G18900 32.278 158 98 3 245 399 232 383 2.54e-14 75.5
MS.gene71399.t1 AT1G76620 27.119 236 130 8 249 447 193 423 6.37e-13 71.2

Find 106 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTAAATTGTCCTTGAATA+TGG 0.173375 5.1:-10097702 None:intergenic
ACCAGGAGAAACTTGCATTT+TGG 0.212496 5.1:+10098007 MS.gene71399:CDS
TGCCCTATGATTTCAGTTTC+AGG 0.214439 5.1:+10099691 MS.gene71399:CDS
ATGAAAGCAAGAGGCATATT+TGG 0.216429 5.1:+10098733 MS.gene71399:CDS
TGGATCCTTTGATGGAATTC+TGG 0.239508 5.1:-10097203 None:intergenic
TCCATATTCAAGGACAATTT+AGG 0.245498 5.1:+10097701 MS.gene71399:CDS
GGCACCAATATCTCTTGTTT+TGG 0.267194 5.1:-10097771 None:intergenic
ATATCCTCTGAAACTCTATT+TGG 0.284459 5.1:-10097644 None:intergenic
CTTGGAATCTTTGTTGGATT+GGG 0.291306 5.1:+10099575 MS.gene71399:CDS
CTTGTCAGCTGATTCTTGTT+TGG 0.329258 5.1:-10097436 None:intergenic
CTTTCTACTAGAAGCACTTC+TGG 0.332145 5.1:-10097298 None:intergenic
AGCAAGAGGCATATTTGGTT+TGG 0.336129 5.1:+10098738 MS.gene71399:CDS
TGAAGATAAGGAGTCTTGTT+TGG 0.352746 5.1:-10097346 None:intergenic
TTTCAGACAAGGTTTATATC+AGG 0.354150 5.1:+10097125 MS.gene71399:CDS
AGAGCACTCACTAGACCTTT+AGG 0.357274 5.1:+10096838 MS.gene71399:CDS
AGCAAAGAGAGATTATTTAC+AGG 0.366908 5.1:+10099473 MS.gene71399:CDS
TTGATGTTTGGATCCTTTGA+TGG 0.368156 5.1:-10097211 None:intergenic
TATGACAATTTCCATATTCA+AGG 0.368992 5.1:+10097691 MS.gene71399:CDS
ATCAGTGCTACAACCATTTC+AGG 0.373611 5.1:-10098249 None:intergenic
AAAAGGAGGGAGCAGGAAAA+TGG 0.374679 5.1:+10096609 MS.gene71399:CDS
GCTGCCTTCCCCTTCTTTCA+AGG 0.376152 5.1:-10099644 None:intergenic
CAACCTGAAACTGAAATCAT+AGG 0.378498 5.1:-10099694 None:intergenic
CAGAGCACACACCACTCTTC+AGG 0.383282 5.1:+10095974 MS.gene71399:CDS
AAGCAGGAAAAGATGGAAAA+AGG 0.383928 5.1:+10096592 MS.gene71399:intron
ATATCCAAAACAAGAGATAT+TGG 0.385180 5.1:+10097767 MS.gene71399:CDS
ACTTGGAATCTTTGTTGGAT+TGG 0.390859 5.1:+10099574 MS.gene71399:CDS
TTTGGAATGGTCTGAACCTT+TGG 0.394809 5.1:+10098756 MS.gene71399:CDS
ATCTTCTGGTATTGAAGATA+AGG 0.395937 5.1:-10097358 None:intergenic
GATATTGAACAGATACCATA+TGG 0.414029 5.1:-10097749 None:intergenic
AAAGGACTTGGAATCTTTGT+TGG 0.415429 5.1:+10099569 MS.gene71399:CDS
TGTGGCTGAAGTTGCGGTAT+TGG 0.415617 5.1:+10097065 MS.gene71399:CDS
TCAGCTGATTCTTGTTTGGT+TGG 0.420192 5.1:-10097432 None:intergenic
AGGGCGTCGAGAAAGGAAAA+TGG 0.421258 5.1:+10096654 MS.gene71399:CDS
ACAAAATTCCTCAGATGATA+AGG 0.423083 5.1:+10097601 MS.gene71399:CDS
GCTTCCTTTCTCAGTTCAAC+AGG 0.438309 5.1:-10099612 None:intergenic
TGCAGATCACGTGAAGTTGC+AGG 0.442494 5.1:+10097461 MS.gene71399:CDS
CTTACATAATTCAAGTGATA+AGG 0.444130 5.1:-10098555 None:intergenic
TCCAAAATGCAAGTTTCTCC+TGG 0.448612 5.1:-10098008 None:intergenic
AAGAGAAATCTGAGGCCTAA+TGG 0.449344 5.1:-10097274 None:intergenic
TTGGTTGGTGATTTCTTCAC+CGG 0.457642 5.1:-10097417 None:intergenic
AGCTTAATTCTACAACCATT+AGG 0.459006 5.1:+10097259 MS.gene71399:CDS
TCTAGTAGAAAGCTAGTCAA+TGG 0.462544 5.1:+10097309 MS.gene71399:CDS
TGCAGGTTGATAAGTTAAAG+AGG 0.463381 5.1:+10096776 MS.gene71399:intron
ACTTGCCTCTGTGAACTTGA+AGG 0.469270 5.1:+10097975 MS.gene71399:CDS
CAGTTGAATGCCTTGAAAGA+AGG 0.473839 5.1:+10099634 MS.gene71399:CDS
TTGCACTATCTTGTGGAAGC+TGG 0.481719 5.1:+10098785 MS.gene71399:CDS
ATGTGCAAAGCAGGAAAAGA+TGG 0.484944 5.1:+10096585 MS.gene71399:intron
ACTCGACTTTGCAAAGGACT+TGG 0.489476 5.1:+10099557 MS.gene71399:CDS
ACACCTCCACGCGATCCATA+TGG 0.493061 5.1:+10097734 MS.gene71399:CDS
TTGATGGAATTCTGGTCCAT+CGG 0.493905 5.1:-10097195 None:intergenic
GGTGGTTCGATTAGAAGAGA+AGG 0.495299 5.1:+10097095 MS.gene71399:CDS
CTTACATGGGAAGGGAGATA+AGG 0.496981 5.1:-10096880 None:intergenic
TGATGGAATTCTGGTCCATC+GGG 0.498652 5.1:-10097194 None:intergenic
GTTACATTTGCACTATCTTG+TGG 0.506373 5.1:+10098778 MS.gene71399:CDS
AGTTGAATGCCTTGAAAGAA+GGG 0.509505 5.1:+10099635 MS.gene71399:CDS
CTAGTAGAAAGCTAGTCAAT+GGG 0.511137 5.1:+10097310 MS.gene71399:CDS
ACAACCATTTCAGGACTCTC+AGG 0.512777 5.1:-10098240 None:intergenic
GAGGCATATTTGGTTTGGAA+TGG 0.523893 5.1:+10098743 MS.gene71399:CDS
GGGAGATAAGGAGGAAGACG+AGG 0.525815 5.1:-10096868 None:intergenic
GCTACCTGTTGAACTGAGAA+AGG 0.530299 5.1:+10099608 MS.gene71399:CDS
TTTCATTCGGTTGAAATCAA+CGG 0.530335 5.1:-10097825 None:intergenic
CTTAATCTACTTACATGGGA+AGG 0.531642 5.1:-10096889 None:intergenic
GATTATTTACAGGCAGCAGT+TGG 0.534652 5.1:+10099483 MS.gene71399:CDS
TAATTCCAAAGATACTTGAC+TGG 0.540269 5.1:+10099529 MS.gene71399:CDS
GTATCTTACATTCATCATAC+AGG 0.540740 5.1:-10098046 None:intergenic
GGCTGAAGTTGCGGTATTGG+AGG 0.545349 5.1:+10097068 MS.gene71399:CDS
TCGGTTGAAATCAACGGTGG+TGG 0.547080 5.1:-10097819 None:intergenic
CATACCTGAGAGTCCTGAAA+TGG 0.549579 5.1:+10098236 MS.gene71399:CDS
CTTGAAGGGTCTTACTCACC+AGG 0.555043 5.1:+10097990 MS.gene71399:CDS
AACCTGAAACTGAAATCATA+GGG 0.561621 5.1:-10099693 None:intergenic
CGAAAATTCGATTGACCCGA+TGG 0.561722 5.1:+10097179 MS.gene71399:CDS
TTGTAGGCATATTTAGAGCA+TGG 0.564337 5.1:+10098213 MS.gene71399:intron
TGACAGGCCACAATAGTAGT+GGG 0.565218 5.1:+10098483 MS.gene71399:intron
AGAGCTTGTGGCTGAAGTTG+CGG 0.570036 5.1:+10097059 MS.gene71399:CDS
AGTTGCGGTATTGGAGGAAG+AGG 0.573287 5.1:+10097074 MS.gene71399:CDS
AGACGAGGAAGTGCTCCTAA+AGG 0.579607 5.1:-10096853 None:intergenic
TCAGTTCAACAGGTAGCTGA+AGG 0.581607 5.1:-10099602 None:intergenic
ATATGTACCATGTGTGAAAG+AGG 0.585157 5.1:-10099666 None:intergenic
CTTGCCTCTGTGAACTTGAA+GGG 0.587168 5.1:+10097976 MS.gene71399:CDS
CAGATACCATATGGATCGCG+TGG 0.591443 5.1:-10097740 None:intergenic
CACACCAAATAGAGTTTCAG+AGG 0.591852 5.1:+10097640 MS.gene71399:CDS
GTGACAGGCCACAATAGTAG+TGG 0.594519 5.1:+10098482 MS.gene71399:intron
TGCGGTATTGGAGGAAGAGG+TGG 0.595764 5.1:+10097077 MS.gene71399:CDS
AATGATGAGATGAAAGCAAG+AGG 0.596232 5.1:+10098724 MS.gene71399:CDS
TTAATCTACTTACATGGGAA+GGG 0.597323 5.1:-10096888 None:intergenic
CTGTCTACATTTCCTCCAAG+AGG 0.607010 5.1:+10097151 MS.gene71399:CDS
ATGGACCAGAATTCCATCAA+AGG 0.609091 5.1:+10097198 MS.gene71399:CDS
TCAAAGGATCCAAACATCAA+AGG 0.609297 5.1:+10097214 MS.gene71399:CDS
TTCTAACACCTTATCATCTG+AGG 0.614175 5.1:-10097609 None:intergenic
GATAGTGCAAATGTAACCAA+AGG 0.614690 5.1:-10098772 None:intergenic
CATTCGGTTGAAATCAACGG+TGG 0.623534 5.1:-10097822 None:intergenic
TGGAAGCTGGTCATCACCTG+TGG 0.626198 5.1:+10098798 MS.gene71399:CDS
ACAGGCCACAATAGTAGTGG+GGG 0.633577 5.1:+10098485 MS.gene71399:intron
ACATGGGAAGGGAGATAAGG+AGG 0.643159 5.1:-10096877 None:intergenic
TTGATTGATTACCTGAAGAG+TGG 0.650005 5.1:-10095985 None:intergenic
AAGGTTGTGAATTTCAGACA+AGG 0.655478 5.1:+10097114 MS.gene71399:CDS
GGTTGTAGCACTGATGCAGA+AGG 0.659494 5.1:+10098257 MS.gene71399:CDS
GACAGGCCACAATAGTAGTG+GGG 0.662710 5.1:+10098484 MS.gene71399:intron
GTTGAATGCCTTGAAAGAAG+GGG 0.670351 5.1:+10099636 MS.gene71399:CDS
AATGGCTAAAGTCATCACTC+CGG 0.673301 5.1:+10097398 MS.gene71399:CDS
AATGCCTTGAAAGAAGGGGA+AGG 0.676784 5.1:+10099640 MS.gene71399:CDS
AAGGCAGCCTCTTTCACACA+TGG 0.686885 5.1:+10099659 MS.gene71399:CDS
ATACCATATGGATCGCGTGG+AGG 0.714464 5.1:-10097737 None:intergenic
CAGGCCACAATAGTAGTGGG+GGG 0.734448 5.1:+10098486 MS.gene71399:intron
CTTCTGGCAAGAGAAATCTG+AGG 0.757425 5.1:-10097282 None:intergenic
AAGACCCTTCAAGTTCACAG+AGG 0.790606 5.1:-10097980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATCAATGTATTTATTA+AGG + chr5.1:10099359-10099378 MS.gene71399:intron 10.0%
!! TAAATCTATTGAAAAAAAAA+TGG + chr5.1:10097380-10097399 MS.gene71399:CDS 10.0%
!! AATGCTTATCTAAATATAAT+TGG - chr5.1:10098435-10098454 None:intergenic 15.0%
!! GAAAAACAAATAAAGAAAAT+TGG - chr5.1:10096070-10096089 None:intergenic 15.0%
!!! ATATATGAAAATTTGTTTCA+GGG + chr5.1:10098945-10098964 MS.gene71399:intron 15.0%
!!! ATCTATCATAAATTTGTTAT+CGG + chr5.1:10099145-10099164 MS.gene71399:intron 15.0%
!!! ATTTTTATTTTATGAAGGTA+AGG + chr5.1:10099412-10099431 MS.gene71399:intron 15.0%
!!! CATATAATACTTTGAAAAAA+GGG + chr5.1:10096635-10096654 MS.gene71399:CDS 15.0%
!!! TATATATGAAAATTTGTTTC+AGG + chr5.1:10098944-10098963 MS.gene71399:intron 15.0%
!!! TTTTTATTTTATGAAGGTAA+GGG + chr5.1:10099413-10099432 MS.gene71399:intron 15.0%
!!! TTTTTTTTTCTTTCTCTTTA+TGG + chr5.1:10096044-10096063 MS.gene71399:intron 15.0%
!! AAAATTAGAAAAGTGGAAAT+TGG - chr5.1:10099290-10099309 None:intergenic 20.0%
!! AATCTCACAAAAATAATTGT+AGG - chr5.1:10097795-10097814 None:intergenic 20.0%
!! ATAGTTATCATTCTTAATGT+GGG + chr5.1:10099329-10099348 MS.gene71399:intron 20.0%
!! CAATTATTTGGTTATATTGT+AGG + chr5.1:10098197-10098216 MS.gene71399:intron 20.0%
!! CGATTAAAGTAAGTTATAAA+GGG + chr5.1:10097869-10097888 MS.gene71399:intron 20.0%
!! TCGATTAAAGTAAGTTATAA+AGG + chr5.1:10097868-10097887 MS.gene71399:intron 20.0%
!!! AATGTATTTATTAAGGCATT+TGG + chr5.1:10099366-10099385 MS.gene71399:intron 20.0%
!!! ACATTACCTATTTTCTTTTT+CGG + chr5.1:10098862-10098881 MS.gene71399:intron 20.0%
!!! ATTTTCATATATACTAGTCA+AGG - chr5.1:10098937-10098956 None:intergenic 20.0%
!!! GCATATAATACTTTGAAAAA+AGG + chr5.1:10096634-10096653 MS.gene71399:CDS 20.0%
!!! TAAGTGTTACTTTAAAAGTT+AGG + chr5.1:10096422-10096441 MS.gene71399:intron 20.0%
!!! TCTATCATAAATTTGTTATC+GGG + chr5.1:10099146-10099165 MS.gene71399:intron 20.0%
!!! TTCTCATGTTTTTTTTTTGT+TGG + chr5.1:10096143-10096162 MS.gene71399:intron 20.0%
!!! TTTCAACAATCATTTTGTTT+TGG + chr5.1:10097538-10097557 MS.gene71399:intron 20.0%
!!! TTTTCAATAGATTTATCTTC+TGG - chr5.1:10097375-10097394 None:intergenic 20.0%
!!! TTTTCTGTTTGATATTTGTA+AGG + chr5.1:10096085-10096104 MS.gene71399:intron 20.0%
! AAATGAGAAAGAAAGATAGA+AGG - chr5.1:10096521-10096540 None:intergenic 25.0%
! AAGAAACAAATGACCATTTA+AGG + chr5.1:10096112-10096131 MS.gene71399:intron 25.0%
! ATATCCAAAACAAGAGATAT+TGG + chr5.1:10097767-10097786 MS.gene71399:CDS 25.0%
! ATCAAAGTTCCTTCAAAAAA+CGG + chr5.1:10096003-10096022 MS.gene71399:intron 25.0%
! CATAGTTATCATTCTTAATG+TGG + chr5.1:10099328-10099347 MS.gene71399:intron 25.0%
! CTTACATAATTCAAGTGATA+AGG - chr5.1:10098558-10098577 None:intergenic 25.0%
! GCACATCAAATAGTAATTAT+TGG - chr5.1:10097500-10097519 None:intergenic 25.0%
! GTAGAACAATTAATAATGCA+AGG - chr5.1:10096710-10096729 None:intergenic 25.0%
! TAGATGAAAATATTGTTCTG+TGG + chr5.1:10098839-10098858 MS.gene71399:intron 25.0%
! TATGACAATTTCCATATTCA+AGG + chr5.1:10097691-10097710 MS.gene71399:CDS 25.0%
!!! CTTTTTGTTGATTCTACATA+TGG + chr5.1:10097900-10097919 MS.gene71399:intron 25.0%
AAAAACCAGTCAAGTATCTT+TGG - chr5.1:10099537-10099556 None:intergenic 30.0%
AACCTGAAACTGAAATCATA+GGG - chr5.1:10099696-10099715 None:intergenic 30.0%
AAGTTTCCCAAATAAAAACC+TGG - chr5.1:10097959-10097978 None:intergenic 30.0%
ACAAAATTCCTCAGATGATA+AGG + chr5.1:10097601-10097620 MS.gene71399:CDS 30.0%
AGCAAAGAGAGATTATTTAC+AGG + chr5.1:10099473-10099492 MS.gene71399:CDS 30.0%
AGCTTAATTCTACAACCATT+AGG + chr5.1:10097259-10097278 MS.gene71399:CDS 30.0%
CTGACTTAATCTACTTACAT+GGG - chr5.1:10096896-10096915 None:intergenic 30.0%
GATATTGAACAGATACCATA+TGG - chr5.1:10097752-10097771 None:intergenic 30.0%
GATGATCACATAAGACATTA+AGG - chr5.1:10098893-10098912 None:intergenic 30.0%
GCATATCCGAAAAAGAAAAT+AGG - chr5.1:10098871-10098890 None:intergenic 30.0%
GCTAGTGAAAATTAGAAAAG+TGG - chr5.1:10099297-10099316 None:intergenic 30.0%
GCTGAGAATTGAAATAATCT+AGG + chr5.1:10098987-10099006 MS.gene71399:intron 30.0%
GTAATCTACAAAGCATAACA+AGG - chr5.1:10098644-10098663 None:intergenic 30.0%
GTATCTTACATTCATCATAC+AGG - chr5.1:10098049-10098068 None:intergenic 30.0%
TAATTCCAAAGATACTTGAC+TGG + chr5.1:10099529-10099548 MS.gene71399:CDS 30.0%
TCCATATTCAAGGACAATTT+AGG + chr5.1:10097701-10097720 MS.gene71399:CDS 30.0%
TCCTAAATTGTCCTTGAATA+TGG - chr5.1:10097705-10097724 None:intergenic 30.0%
TTAATCTACTTACATGGGAA+GGG - chr5.1:10096891-10096910 None:intergenic 30.0%
TTGAGGTGACTACAATTATT+TGG + chr5.1:10098185-10098204 MS.gene71399:intron 30.0%
TTTCAGACAAGGTTTATATC+AGG + chr5.1:10097125-10097144 MS.gene71399:CDS 30.0%
TTTCATTCGGTTGAAATCAA+CGG - chr5.1:10097828-10097847 None:intergenic 30.0%
! AAATGACCATTTAAGGTTGT+TGG + chr5.1:10096119-10096138 MS.gene71399:intron 30.0%
! ACTGACTTAATCTACTTACA+TGG - chr5.1:10096897-10096916 None:intergenic 30.0%
! ATCTTCTGGTATTGAAGATA+AGG - chr5.1:10097361-10097380 None:intergenic 30.0%
! ATTGACATGAATGGATTTCT+TGG + chr5.1:10098391-10098410 MS.gene71399:intron 30.0%
! ATTTTAGACATTAGAGCTTG+TGG + chr5.1:10097047-10097066 MS.gene71399:intron 30.0%
! CAAGTTACAAGTCAGTTTTT+AGG - chr5.1:10099081-10099100 None:intergenic 30.0%
! CTAAAAGAGTTGTCTTTTTG+AGG + chr5.1:10098111-10098130 MS.gene71399:intron 30.0%
! CTTTTCTAATTTTCACTAGC+AGG + chr5.1:10099297-10099316 MS.gene71399:intron 30.0%
! GAAACGCTGAATTTTTCATT+CGG - chr5.1:10097841-10097860 None:intergenic 30.0%
!! AAACTGACTTGTAACTTGTA+AGG + chr5.1:10099083-10099102 MS.gene71399:intron 30.0%
!! ACATGTCCAGGTTTTTATTT+GGG + chr5.1:10097950-10097969 MS.gene71399:intron 30.0%
!! ATATCCTCTGAAACTCTATT+TGG - chr5.1:10097647-10097666 None:intergenic 30.0%
!! TGATTTTGACCTTTGATGTT+TGG - chr5.1:10097226-10097245 None:intergenic 30.0%
!!! AACCACTTGGTTTTGAATAT+AGG + chr5.1:10096312-10096331 MS.gene71399:intron 30.0%
!!! AATAGTTTGCCGTTTTTTGA+AGG - chr5.1:10096015-10096034 None:intergenic 30.0%
!!! ATTTTTTGCAGCTTTTAGAC+AGG - chr5.1:10098707-10098726 None:intergenic 30.0%
AAAGGACTTGGAATCTTTGT+TGG + chr5.1:10099569-10099588 MS.gene71399:CDS 35.0%
AAGCAGGAAAAGATGGAAAA+AGG + chr5.1:10096592-10096611 MS.gene71399:intron 35.0%
AAGGACATAGTTCTCAGATT+TGG - chr5.1:10096463-10096482 None:intergenic 35.0%
AAGGTTGTGAATTTCAGACA+AGG + chr5.1:10097114-10097133 MS.gene71399:CDS 35.0%
AATGATGAGATGAAAGCAAG+AGG + chr5.1:10098724-10098743 MS.gene71399:CDS 35.0%
ACAAAAGCTGAGAACATTAG+AGG - chr5.1:10098293-10098312 None:intergenic 35.0%
ACTACTTAAGTCTAACCACT+TGG + chr5.1:10096299-10096318 MS.gene71399:intron 35.0%
ACTTGGAATCTTTGTTGGAT+TGG + chr5.1:10099574-10099593 MS.gene71399:CDS 35.0%
AGCCTATATTCAAAACCAAG+TGG - chr5.1:10096317-10096336 None:intergenic 35.0%
AGGAAAAGATGGAAAAAGGA+GGG + chr5.1:10096596-10096615 MS.gene71399:intron 35.0%
AGTTGAATGCCTTGAAAGAA+GGG + chr5.1:10099635-10099654 MS.gene71399:CDS 35.0%
ATATGTACCATGTGTGAAAG+AGG - chr5.1:10099669-10099688 None:intergenic 35.0%
CAAAAGCTGAGAACATTAGA+GGG - chr5.1:10098292-10098311 None:intergenic 35.0%
CAACCTGAAACTGAAATCAT+AGG - chr5.1:10099697-10099716 None:intergenic 35.0%
CCAAATGCATTGAATACGAT+CGG - chr5.1:10096949-10096968 None:intergenic 35.0%
CCATCACATATTGACATGAA+TGG + chr5.1:10098382-10098401 MS.gene71399:intron 35.0%
CCATTCATGTCAATATGTGA+TGG - chr5.1:10098385-10098404 None:intergenic 35.0%
CCTATGATACCAAACAAAAC+CGG - chr5.1:10099223-10099242 None:intergenic 35.0%
CTAATCTAAAAGACATGTCC+AGG + chr5.1:10097938-10097957 MS.gene71399:intron 35.0%
CTAGTAGAAAGCTAGTCAAT+GGG + chr5.1:10097310-10097329 MS.gene71399:CDS 35.0%
CTTAATCTACTTACATGGGA+AGG - chr5.1:10096892-10096911 None:intergenic 35.0%
CTTGGAATCTTTGTTGGATT+GGG + chr5.1:10099575-10099594 MS.gene71399:CDS 35.0%
GAAGCAAAGATGAATTGAGA+AGG - chr5.1:10098363-10098382 None:intergenic 35.0%
GAGAAACCAACAACCTTAAA+TGG - chr5.1:10096128-10096147 None:intergenic 35.0%
GAGAAAGAAAGATAGAAGGA+AGG - chr5.1:10096517-10096536 None:intergenic 35.0%
GATAGTGCAAATGTAACCAA+AGG - chr5.1:10098775-10098794 None:intergenic 35.0%
GTTACATTTGCACTATCTTG+TGG + chr5.1:10098778-10098797 MS.gene71399:CDS 35.0%
TCAAAGGATCCAAACATCAA+AGG + chr5.1:10097214-10097233 MS.gene71399:CDS 35.0%
TCTAGTAGAAAGCTAGTCAA+TGG + chr5.1:10097309-10097328 MS.gene71399:CDS 35.0%
TGGAGATGATAAGTAAAGAC+TGG + chr5.1:10096205-10096224 MS.gene71399:intron 35.0%
TGTAGTCACCTCAACATATT+AGG - chr5.1:10098179-10098198 None:intergenic 35.0%
TGTTTCTCATGAGAAGTGAA+AGG - chr5.1:10096482-10096501 None:intergenic 35.0%
TTACCTTGCCTAATATGTTG+AGG + chr5.1:10098168-10098187 MS.gene71399:intron 35.0%
TTAGGTCATATCTCAAGTGA+AGG - chr5.1:10099063-10099082 None:intergenic 35.0%
TTCTAACACCTTATCATCTG+AGG - chr5.1:10097612-10097631 None:intergenic 35.0%
TTGAGAAACAAACATACCAC+AGG - chr5.1:10098817-10098836 None:intergenic 35.0%
TTGATGTTTGGATCCTTTGA+TGG - chr5.1:10097214-10097233 None:intergenic 35.0%
TTGATTGATTACCTGAAGAG+TGG - chr5.1:10095988-10096007 None:intergenic 35.0%
! AAGGCATTTGGTTGAATTGA+TGG + chr5.1:10099378-10099397 MS.gene71399:intron 35.0%
! ATGAAAGCAAGAGGCATATT+TGG + chr5.1:10098733-10098752 MS.gene71399:CDS 35.0%
! GACATGTCCAGGTTTTTATT+TGG + chr5.1:10097949-10097968 MS.gene71399:intron 35.0%
! GTTTTTACTCGACTTTGCAA+AGG + chr5.1:10099551-10099570 MS.gene71399:CDS 35.0%
! TGTTTCAGGGTGTTATGTAA+TGG + chr5.1:10098958-10098977 MS.gene71399:intron 35.0%
! TTGTAGGCATATTTAGAGCA+TGG + chr5.1:10098213-10098232 MS.gene71399:intron 35.0%
!! AACTTGGTAATGTTTGTGAC+AGG + chr5.1:10098467-10098486 MS.gene71399:intron 35.0%
!! CATTCGAGTTGACTAAAACT+TGG + chr5.1:10098451-10098470 MS.gene71399:intron 35.0%
!! TGAAGATAAGGAGTCTTGTT+TGG - chr5.1:10097349-10097368 None:intergenic 35.0%
!! TGCAGGTTGATAAGTTAAAG+AGG + chr5.1:10096776-10096795 MS.gene71399:intron 35.0%
!!! CTTATTTTGATCCTACAAGC+CGG + chr5.1:10099201-10099220 MS.gene71399:intron 35.0%
!!! TTTTGTTTTGGTTGATCAGC+TGG + chr5.1:10097550-10097569 MS.gene71399:intron 35.0%
!!! TTTTTGTTGGTCTTACCCTT+CGG + chr5.1:10096156-10096175 MS.gene71399:intron 35.0%
AATGGCTAAAGTCATCACTC+CGG + chr5.1:10097398-10097417 MS.gene71399:CDS 40.0%
ACTCACTACTTGTCACTACA+AGG + chr5.1:10098083-10098102 MS.gene71399:intron 40.0%
AGTCTAAACTTGCGTACTTG+TGG + chr5.1:10096248-10096267 MS.gene71399:intron 40.0%
ATCAGTGCTACAACCATTTC+AGG - chr5.1:10098252-10098271 None:intergenic 40.0%
ATGGACCAGAATTCCATCAA+AGG + chr5.1:10097198-10097217 MS.gene71399:CDS 40.0%
ATGTGCAAAGCAGGAAAAGA+TGG + chr5.1:10096585-10096604 MS.gene71399:intron 40.0%
ATTATCCAGCAAGGTACAGT+AGG + chr5.1:10099177-10099196 MS.gene71399:intron 40.0%
CACACCAAATAGAGTTTCAG+AGG + chr5.1:10097640-10097659 MS.gene71399:CDS 40.0%
CAGGAAAAGATGGAAAAAGG+AGG + chr5.1:10096595-10096614 MS.gene71399:intron 40.0%
CAGTTGAATGCCTTGAAAGA+AGG + chr5.1:10099634-10099653 MS.gene71399:CDS 40.0%
CCGATCGTATTCAATGCATT+TGG + chr5.1:10096946-10096965 MS.gene71399:intron 40.0%
GATTATTTACAGGCAGCAGT+TGG + chr5.1:10099483-10099502 MS.gene71399:CDS 40.0%
GTTGAATGCCTTGAAAGAAG+GGG + chr5.1:10099636-10099655 MS.gene71399:CDS 40.0%
TCACCTCAACATATTAGGCA+AGG - chr5.1:10098174-10098193 None:intergenic 40.0%
TCCAAAATGCAAGTTTCTCC+TGG - chr5.1:10098011-10098030 None:intergenic 40.0%
TCTCAAGTGAAGGTGAGATT+TGG - chr5.1:10099053-10099072 None:intergenic 40.0%
TCTCACTTAATGTGCAAAGC+AGG + chr5.1:10096576-10096595 MS.gene71399:intron 40.0%
TGCCCTATGATTTCAGTTTC+AGG + chr5.1:10099691-10099710 MS.gene71399:CDS 40.0%
TGGATCCTTTGATGGAATTC+TGG - chr5.1:10097206-10097225 None:intergenic 40.0%
TTATCCAGCAAGGTACAGTA+GGG + chr5.1:10099178-10099197 MS.gene71399:intron 40.0%
TTGATGGAATTCTGGTCCAT+CGG - chr5.1:10097198-10097217 None:intergenic 40.0%
! AAGAGAAATCTGAGGCCTAA+TGG - chr5.1:10097277-10097296 None:intergenic 40.0%
! ACCAGGAGAAACTTGCATTT+TGG + chr5.1:10098007-10098026 MS.gene71399:CDS 40.0%
! AGCAAGAGGCATATTTGGTT+TGG + chr5.1:10098738-10098757 MS.gene71399:CDS 40.0%
! CATCGGGTCAATCGAATTTT+CGG - chr5.1:10097181-10097200 None:intergenic 40.0%
! CTTGTCAGCTGATTCTTGTT+TGG - chr5.1:10097439-10097458 None:intergenic 40.0%
! TCAGCTGATTCTTGTTTGGT+TGG - chr5.1:10097435-10097454 None:intergenic 40.0%
! TTATGCTGCTTGAAGTTTGC+AGG + chr5.1:10096759-10096778 MS.gene71399:intron 40.0%
! TTTGGAATGGTCTGAACCTT+TGG + chr5.1:10098756-10098775 MS.gene71399:CDS 40.0%
!! AAATTTGTTATCGGGCCACT+CGG + chr5.1:10099154-10099173 MS.gene71399:intron 40.0%
!! CTTTCTACTAGAAGCACTTC+TGG - chr5.1:10097301-10097320 None:intergenic 40.0%
!! GAGGCATATTTGGTTTGGAA+TGG + chr5.1:10098743-10098762 MS.gene71399:CDS 40.0%
!! GGCACCAATATCTCTTGTTT+TGG - chr5.1:10097774-10097793 None:intergenic 40.0%
!! TTGGTTGGTGATTTCTTCAC+CGG - chr5.1:10097420-10097439 None:intergenic 40.0%
!!! CCGGTTTTGTTTGGTATCAT+AGG + chr5.1:10099220-10099239 MS.gene71399:intron 40.0%
AAAAGGAGGGAGCAGGAAAA+TGG + chr5.1:10096609-10096628 MS.gene71399:CDS 45.0%
AAGCGCTAAGCATAACTGTG+TGG + chr5.1:10099017-10099036 MS.gene71399:intron 45.0%
AATGCCTTGAAAGAAGGGGA+AGG + chr5.1:10099640-10099659 MS.gene71399:CDS 45.0%
ACAACCATTTCAGGACTCTC+AGG - chr5.1:10098243-10098262 None:intergenic 45.0%
ACTCGACTTTGCAAAGGACT+TGG + chr5.1:10099557-10099576 MS.gene71399:CDS 45.0%
ACTTGCCTCTGTGAACTTGA+AGG + chr5.1:10097975-10097994 MS.gene71399:CDS 45.0%
ATTACGAGAGTCCGATTCCT+CGG - chr5.1:10096184-10096203 None:intergenic 45.0%
CATACCTGAGAGTCCTGAAA+TGG + chr5.1:10098236-10098255 MS.gene71399:CDS 45.0%
CATTCGGTTGAAATCAACGG+TGG - chr5.1:10097825-10097844 None:intergenic 45.0%
CGAAAATTCGATTGACCCGA+TGG + chr5.1:10097179-10097198 MS.gene71399:CDS 45.0%
CTGTCTACATTTCCTCCAAG+AGG + chr5.1:10097151-10097170 MS.gene71399:CDS 45.0%
CTTACATGGGAAGGGAGATA+AGG - chr5.1:10096883-10096902 None:intergenic 45.0%
CTTCTGGCAAGAGAAATCTG+AGG - chr5.1:10097285-10097304 None:intergenic 45.0%
CTTGCCTCTGTGAACTTGAA+GGG + chr5.1:10097976-10097995 MS.gene71399:CDS 45.0%
GCTACCTGTTGAACTGAGAA+AGG + chr5.1:10099608-10099627 MS.gene71399:CDS 45.0%
GCTTCCTTTCTCAGTTCAAC+AGG - chr5.1:10099615-10099634 None:intergenic 45.0%
GGAATCGGACTCTCGTAATT+TGG + chr5.1:10096185-10096204 MS.gene71399:intron 45.0%
GGTGGTTCGATTAGAAGAGA+AGG + chr5.1:10097095-10097114 MS.gene71399:CDS 45.0%
TCAGTTCAACAGGTAGCTGA+AGG - chr5.1:10099605-10099624 None:intergenic 45.0%
TGACAGGCCACAATAGTAGT+GGG + chr5.1:10098483-10098502 MS.gene71399:intron 45.0%
TGATGGAATTCTGGTCCATC+GGG - chr5.1:10097197-10097216 None:intergenic 45.0%
TTGCACTATCTTGTGGAAGC+TGG + chr5.1:10098785-10098804 MS.gene71399:CDS 45.0%
! AAGACCCTTCAAGTTCACAG+AGG - chr5.1:10097983-10098002 None:intergenic 45.0%
! AGAGCACTCACTAGACCTTT+AGG + chr5.1:10096838-10096857 MS.gene71399:CDS 45.0%
! ATTTTCGGCATTCCTCTTGG+AGG - chr5.1:10097166-10097185 None:intergenic 45.0%
! CGAATTTTCGGCATTCCTCT+TGG - chr5.1:10097169-10097188 None:intergenic 45.0%
! CTTTTAGACAGGTCTGTTGC+AGG - chr5.1:10098696-10098715 None:intergenic 45.0%
!! ACCAAACAAAACCGGCTTGT+AGG - chr5.1:10099215-10099234 None:intergenic 45.0%
!! TGAAAAAAGGGCGTCGAGAA+AGG + chr5.1:10096647-10096666 MS.gene71399:CDS 45.0%
!!! TCCTACAAGCCGGTTTTGTT+TGG + chr5.1:10099211-10099230 MS.gene71399:intron 45.0%
!!! TATATATTTTTATTTTATGA+AGG + chr5.1:10099407-10099426 MS.gene71399:intron 5.0%
AAGGCAGCCTCTTTCACACA+TGG + chr5.1:10099659-10099678 MS.gene71399:CDS 50.0%
ACAGGCCACAATAGTAGTGG+GGG + chr5.1:10098485-10098504 MS.gene71399:intron 50.0%
ACATGGGAAGGGAGATAAGG+AGG - chr5.1:10096880-10096899 None:intergenic 50.0%
ACCTTGCTGGATAATCCGAG+TGG - chr5.1:10099172-10099191 None:intergenic 50.0%
AGAGCTTGTGGCTGAAGTTG+CGG + chr5.1:10097059-10097078 MS.gene71399:CDS 50.0%
AGATGGAAAAAGGAGGGAGC+AGG + chr5.1:10096602-10096621 MS.gene71399:CDS 50.0%
ATACCATATGGATCGCGTGG+AGG - chr5.1:10097740-10097759 None:intergenic 50.0%
CAGATACCATATGGATCGCG+TGG - chr5.1:10097743-10097762 None:intergenic 50.0%
CTTGAAGGGTCTTACTCACC+AGG + chr5.1:10097990-10098009 MS.gene71399:CDS 50.0%
GACAGGCCACAATAGTAGTG+GGG + chr5.1:10098484-10098503 MS.gene71399:intron 50.0%
GTGACAGGCCACAATAGTAG+TGG + chr5.1:10098482-10098501 MS.gene71399:intron 50.0%
TAAGCCCTACTGTACCTTGC+TGG - chr5.1:10099185-10099204 None:intergenic 50.0%
TCGGTTGAAATCAACGGTGG+TGG - chr5.1:10097822-10097841 None:intergenic 50.0%
TGCAGATCACGTGAAGTTGC+AGG + chr5.1:10097461-10097480 MS.gene71399:CDS 50.0%
TGTGGCTGAAGTTGCGGTAT+TGG + chr5.1:10097065-10097084 MS.gene71399:CDS 50.0%
TTACGAGAGTCCGATTCCTC+GGG - chr5.1:10096183-10096202 None:intergenic 50.0%
! AGTTGCGGTATTGGAGGAAG+AGG + chr5.1:10097074-10097093 MS.gene71399:CDS 50.0%
!! AGACGAGGAAGTGCTCCTAA+AGG - chr5.1:10096856-10096875 None:intergenic 50.0%
!! AGGGCGTCGAGAAAGGAAAA+TGG + chr5.1:10096654-10096673 MS.gene71399:CDS 50.0%
!! GGTTGTAGCACTGATGCAGA+AGG + chr5.1:10098257-10098276 MS.gene71399:CDS 50.0%
ACACCTCCACGCGATCCATA+TGG + chr5.1:10097734-10097753 MS.gene71399:CDS 55.0%
CAGAGCACACACCACTCTTC+AGG + chr5.1:10095974-10095993 MS.gene71399:CDS 55.0%
GCCACTCGGATTATCCAGCA+AGG + chr5.1:10099168-10099187 MS.gene71399:intron 55.0%
GCTGCCTTCCCCTTCTTTCA+AGG - chr5.1:10099647-10099666 None:intergenic 55.0%
GGGAGATAAGGAGGAAGACG+AGG - chr5.1:10096871-10096890 None:intergenic 55.0%
GTGTCCCCCCACTACTATTG+TGG - chr5.1:10098493-10098512 None:intergenic 55.0%
TGGAAGCTGGTCATCACCTG+TGG + chr5.1:10098798-10098817 MS.gene71399:CDS 55.0%
! CAGGCCACAATAGTAGTGGG+GGG + chr5.1:10098486-10098505 MS.gene71399:intron 55.0%
! GGCTGAAGTTGCGGTATTGG+AGG + chr5.1:10097068-10097087 MS.gene71399:CDS 55.0%
! TGCGGTATTGGAGGAAGAGG+TGG + chr5.1:10097077-10097096 MS.gene71399:CDS 55.0%
ACCCTTCGGTCCCGAGGAAT+CGG + chr5.1:10096170-10096189 MS.gene71399:intron 60.0%
AGTGGGGGGACACTTGCTCA+AGG + chr5.1:10098500-10098519 MS.gene71399:CDS 60.0%
TCCGATTCCTCGGGACCGAA+GGG - chr5.1:10096174-10096193 None:intergenic 60.0%
GGTCTTACCCTTCGGTCCCG+AGG + chr5.1:10096164-10096183 MS.gene71399:intron 65.0%
GTCCGATTCCTCGGGACCGA+AGG - chr5.1:10096175-10096194 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 10095966 10099731 10095966 ID=MS.gene71399
chr5.1 mRNA 10095966 10099731 10095966 ID=MS.gene71399.t1;Parent=MS.gene71399
chr5.1 exon 10095966 10095995 10095966 ID=MS.gene71399.t1.exon1;Parent=MS.gene71399.t1
chr5.1 CDS 10095966 10095995 10095966 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
chr5.1 exon 10096598 10096690 10096598 ID=MS.gene71399.t1.exon2;Parent=MS.gene71399.t1
chr5.1 CDS 10096598 10096690 10096598 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
chr5.1 exon 10096781 10096897 10096781 ID=MS.gene71399.t1.exon3;Parent=MS.gene71399.t1
chr5.1 CDS 10096781 10096897 10096781 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
chr5.1 exon 10097054 10097482 10097054 ID=MS.gene71399.t1.exon4;Parent=MS.gene71399.t1
chr5.1 CDS 10097054 10097482 10097054 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
chr5.1 exon 10097569 10097876 10097569 ID=MS.gene71399.t1.exon5;Parent=MS.gene71399.t1
chr5.1 CDS 10097569 10097876 10097569 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
chr5.1 exon 10097960 10098059 10097960 ID=MS.gene71399.t1.exon6;Parent=MS.gene71399.t1
chr5.1 CDS 10097960 10098059 10097960 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
chr5.1 exon 10098219 10098278 10098219 ID=MS.gene71399.t1.exon7;Parent=MS.gene71399.t1
chr5.1 CDS 10098219 10098278 10098219 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
chr5.1 exon 10098489 10098572 10098489 ID=MS.gene71399.t1.exon8;Parent=MS.gene71399.t1
chr5.1 CDS 10098489 10098572 10098489 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
chr5.1 exon 10098703 10098819 10098703 ID=MS.gene71399.t1.exon9;Parent=MS.gene71399.t1
chr5.1 CDS 10098703 10098819 10098703 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
chr5.1 exon 10099429 10099731 10099429 ID=MS.gene71399.t1.exon10;Parent=MS.gene71399.t1
chr5.1 CDS 10099429 10099731 10099429 ID=cds.MS.gene71399.t1;Parent=MS.gene71399.t1
Gene Sequence

>MS.gene71399

ATGAGTAGCAGAGCACACACCACTCTTCAGGTAATCAATCAAAGTTCCTTCAAAAAACGGCAAACTATTTTCTTCTTCTTTTTTTTTCTTTCTCTTTATGGCCAATTTTCTTTATTTGTTTTTCTGTTTGATATTTGTAAGGTCTTAAGAAACAAATGACCATTTAAGGTTGTTGGTTTCTCATGTTTTTTTTTTGTTGGTCTTACCCTTCGGTCCCGAGGAATCGGACTCTCGTAATTTGGAGATGATAAGTAAAGACTGGTCAAAGATTATTCATGCTATAGTCTAAACTTGCGTACTTGTGGTCAATTTGACTTTCACTGAAACTCATCGACTACTTAAGTCTAACCACTTGGTTTTGAATATAGGCTTCTCATGAAAATTAAGCTATGTAACATAAAATCTCTTAGAAAAATTGAGAAAAATAAGAAATTAGTTTAAAAGCATAACATAAACTAAGTGTTACTTTAAAAGTTAGGAATGATGTTTTAATTCCAAATCTGAGAACTATGTCCTTTCACTTCTCATGAGAAACAAATAGTCTCTGTCCTTCCTTCTATCTTTCTTTCTCATTTCATACAAAAACTGAAGTTTCTACAAAAAAATTGTTTCTCACTTAATGTGCAAAGCAGGAAAAGATGGAAAAAGGAGGGAGCAGGAAAATGGCTGCATATAATACTTTGAAAAAAGGGCGTCGAGAAAGGAAAATGGCTTTGATACAAGATGTGAGTGTAACATATTCCTTGCATTATTAATTGTTCTACACATTATTTGTAATTTTTCAGTGTAGTTATTATGCTGCTTGAAGTTTGCAGGTTGATAAGTTAAAGAGGAAGCTAAGACATGAAGAGAATGTTCATAGAGTGTTAGAAAGAGCACTCACTAGACCTTTAGGAGCACTTCCTCGTCTTCCTCCTTATCTCCCTTCCCATGTAAGTAGATTAAGTCAGTGATCGATCAATTGTATTCACTATATCTCACCGATCGTATTCAATGCATTTGGTATATATCTTAATTAGAATTAAGTTTTTGATCTTTGATATCTATAGATATCGAAAGTAAGAAAAACTGTGTATTGTGTATTTTAGACATTAGAGCTTGTGGCTGAAGTTGCGGTATTGGAGGAAGAGGTGGTTCGATTAGAAGAGAAGGTTGTGAATTTCAGACAAGGTTTATATCAGGAAGCTGTCTACATTTCCTCCAAGAGGAATGCCGAAAATTCGATTGACCCGATGGACCAGAATTCCATCAAAGGATCCAAACATCAAAGGTCAAAATCATTGTCTCAAAGTGAGCTTAATTCTACAACCATTAGGCCTCAGATTTCTCTTGCCAGAAGTGCTTCTAGTAGAAAGCTAGTCAATGGGAAGCAATTGCATTCCAAACAAGACTCCTTATCTTCAATACCAGAAGATAAATCTATTGAAAAAAAAATGGCTAAAGTCATCACTCCGGTGAAGAAATCACCAACCAAACAAGAATCAGCTGACAAGTGTGCAGATCACGTGAAGTTGCAGGTACTTAACAATTTCCAATAATTACTATTTGATGTGCGAAACAATTGAGCTGTCATTTCAACAATCATTTTGTTTTGGTTGATCAGCTGGAGAAGAGATTAGTAGATCAAGAAAGAGCACAAAATTCCTCAGATGATAAGGTGTTAGAAGTTGATAGCACACCAAATAGAGTTTCAGAGGATATAGTCAAGTGTTTGTGTAGCATATTTATGACAATTTCCATATTCAAGGACAATTTAGGAGAATCGAAAACACCTCCACGCGATCCATATGGTATCTGTTCAATATCCAAAACAAGAGATATTGGTGCCTACAATTATTTTTGTGAGATTGAAGCCACCACCGTTGATTTCAACCGAATGAAAAATTCAGCGTTTCTCATCAATCGATTAAAGTAAGTTATAAAGGGTTTATTAACTTTTTGTTGATTCTACATATGGACTATGAGTGTCTGTCTAATCTAAAAGACATGTCCAGGTTTTTATTTGGGAAACTTGCCTCTGTGAACTTGAAGGGTCTTACTCACCAGGAGAAACTTGCATTTTGGATAAACACTTATAATTCCTGTATGATGAATGTAAGATACTTTTTCTGTCACTCACTCACTACTTGTCACTACAAGGCAAAACTAAAAGAGTTGTCTTTTTGAGGTCTATTTTTATATTTGATGTCACATACACTCACATTACCTTGCCTAATATGTTGAGGTGACTACAATTATTTGGTTATATTGTAGGCATATTTAGAGCATGGCATACCTGAGAGTCCTGAAATGGTTGTAGCACTGATGCAGAAGGTACAATAATCCCTCTAATGTTCTCAGCTTTTGTTTTTGTTTTAAGAACAAATTATTCAGAGCACAAAAACTATCGTTGTTCCTTCTCAATTCATCTTTGCTTCCATCACATATTGACATGAATGGATTTCTTGGTACTCTTCTTTCTAACTTCCAATTATATTTAGATAAGCATTCGAGTTGACTAAAACTTGGTAATGTTTGTGACAGGCCACAATAGTAGTGGGGGGACACTTGCTCAAGGCAATGACTATAGAGCACTTCATCTTGAGACTTCCTTATCACTTGAATTATGTAAGTTCATAATCTACTATCTGCTTGTGCTAAACATGATCATTTTTTATTTTTTTATTTTTTGAAGTCCTTGTTATGCTTTGTAGATTACAATTCATCTCTTGATTTTCATCTTTGCTTCCTGCAACAGACCTGTCTAAAAGCTGCAAAAAATGATGAGATGAAAGCAAGAGGCATATTTGGTTTGGAATGGTCTGAACCTTTGGTTACATTTGCACTATCTTGTGGAAGCTGGTCATCACCTGTGGTATGTTTGTTTCTCAATTTAGATGAAAATATTGTTCTGTGGACATTACCTATTTTCTTTTTCGGATATGCCTTAATGTCTTATGTGATCATCTAGTCTGACAATATATGATTTCCTTGACTAGTATATATGAAAATTTGTTTCAGGGTGTTATGTAATGGTTAGATGCTGAGAATTGAAATAATCTAGGATAGATTAAGCGCTAAGCATAACTGTGTGGAGAAAATAATCCAAATCTCACCTTCACTTGAGATATGACCTAAAAACTGACTTGTAACTTGTAAGGTAATGACTGAGTTAGTTTCAAAACTTAAGATGTATTGTAATCTATCATAAATTTGTTATCGGGCCACTCGGATTATCCAGCAAGGTACAGTAGGGCTTATTTTGATCCTACAAGCCGGTTTTGTTTGGTATCATAGGAGACTCATCATTATGATACAAAATTAAACATAGTGAAAAGCTTTCCAATTTCCACTTTTCTAATTTTCACTAGCAGGATCAGTTACATAGTTATCATTCTTAATGTGGGTGAAATCATAAATCAATGTATTTATTAAGGCATTTGGTTGAATTGATGGAACAAATATATATTTTTATTTTATGAAGGTAAGGGTGTACACAGCATCACAAGTTGATAATGAGTTAGAAGCAGCAAAGAGAGATTATTTACAGGCAGCAGTTGGCATTACAAAAACAAATAAGTTAATAATTCCAAAGATACTTGACTGGTTTTTACTCGACTTTGCAAAGGACTTGGAATCTTTGTTGGATTGGGTCTGCCTTCAGCTACCTGTTGAACTGAGAAAGGAAGCAGTTGAATGCCTTGAAAGAAGGGGAAGGCAGCCTCTTTCACACATGGTACATATGATGCCCTATGATTTCAGTTTCAGGTTGCTTGTACACCAGTAA
Protein sequence

>MS.gene71399.t1

MSSRAHTTLQEKMEKGGSRKMAAYNTLKKGRRERKMALIQDVDKLKRKLRHEENVHRVLERALTRPLGALPRLPPYLPSHTLELVAEVAVLEEEVVRLEEKVVNFRQGLYQEAVYISSKRNAENSIDPMDQNSIKGSKHQRSKSLSQSELNSTTIRPQISLARSASSRKLVNGKQLHSKQDSLSSIPEDKSIEKKMAKVITPVKKSPTKQESADKCADHVKLQLEKRLVDQERAQNSSDDKVLEVDSTPNRVSEDIVKCLCSIFMTISIFKDNLGESKTPPRDPYGICSISKTRDIGAYNYFCEIEATTVDFNRMKNSAFLINRLKFLFGKLASVNLKGLTHQEKLAFWINTYNSCMMNAYLEHGIPESPEMVVALMQKATIVVGGHLLKAMTIEHFILRLPYHLNYTCLKAAKNDEMKARGIFGLEWSEPLVTFALSCGSWSSPVVRVYTASQVDNELEAAKRDYLQAAVGITKTNKLIIPKILDWFLLDFAKDLESLLDWVCLQLPVELRKEAVECLERRGRQPLSHMVHMMPYDFSFRLLVHQ