Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71773.t1 | XP_013470146.1 | 95.1 | 162 | 3 | 1 | 1 | 162 | 22 | 178 | 7.30E-82 | 313.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71773.t1 | Q8RYC6 | 50.0 | 162 | 72 | 2 | 2 | 154 | 24 | 185 | 3.3e-38 | 159.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71773.t1 | A0A072VQ82 | 95.1 | 162 | 3 | 1 | 1 | 162 | 22 | 178 | 5.3e-82 | 313.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene71773.t1 | TR | AUX/IAA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050020 | MS.gene71773 | 0.800543 | 1.37E-48 | -1.69E-46 |
MS.gene050584 | MS.gene71773 | 0.817434 | 3.30E-52 | -1.69E-46 |
MS.gene050807 | MS.gene71773 | 0.809233 | 2.09E-50 | -1.69E-46 |
MS.gene051789 | MS.gene71773 | 0.864407 | 1.24E-64 | -1.69E-46 |
MS.gene053074 | MS.gene71773 | 0.828213 | 1.02E-54 | -1.69E-46 |
MS.gene053563 | MS.gene71773 | 0.820253 | 7.56E-53 | -1.69E-46 |
MS.gene054596 | MS.gene71773 | 0.807613 | 4.64E-50 | -1.69E-46 |
MS.gene055207 | MS.gene71773 | 0.83959 | 1.45E-57 | -1.69E-46 |
MS.gene059006 | MS.gene71773 | 0.839591 | 1.45E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71773.t1 | MTR_1g109510 | 95.062 | 162 | 3 | 1 | 1 | 162 | 22 | 178 | 1.55e-110 | 312 |
MS.gene71773.t1 | MTR_1g069495 | 40.385 | 104 | 43 | 2 | 68 | 152 | 146 | 249 | 5.18e-17 | 76.3 |
MS.gene71773.t1 | MTR_5g067350 | 32.653 | 147 | 77 | 4 | 23 | 152 | 187 | 328 | 3.51e-16 | 74.7 |
MS.gene71773.t1 | MTR_1g085750 | 42.697 | 89 | 49 | 1 | 69 | 155 | 85 | 173 | 1.92e-15 | 70.1 |
MS.gene71773.t1 | MTR_1g040675 | 36.879 | 141 | 65 | 5 | 18 | 152 | 53 | 175 | 5.04e-15 | 69.3 |
MS.gene71773.t1 | MTR_4g124300 | 31.544 | 149 | 83 | 4 | 8 | 155 | 53 | 183 | 9.20e-15 | 68.6 |
MS.gene71773.t1 | MTR_3g106850 | 28.358 | 134 | 90 | 2 | 21 | 152 | 77 | 206 | 9.97e-15 | 68.9 |
MS.gene71773.t1 | MTR_7g110790 | 43.023 | 86 | 47 | 1 | 69 | 152 | 70 | 155 | 3.06e-14 | 66.6 |
MS.gene71773.t1 | MTR_6g488150 | 35.811 | 148 | 69 | 6 | 25 | 152 | 94 | 235 | 3.15e-14 | 68.2 |
MS.gene71773.t1 | MTR_5g030710 | 29.412 | 136 | 79 | 3 | 33 | 152 | 182 | 316 | 4.03e-14 | 68.9 |
MS.gene71773.t1 | MTR_1g076270 | 36.290 | 124 | 59 | 4 | 33 | 152 | 64 | 171 | 4.17e-13 | 63.9 |
MS.gene71773.t1 | MTR_1g093350 | 36.290 | 124 | 59 | 4 | 33 | 152 | 64 | 171 | 4.17e-13 | 63.9 |
MS.gene71773.t1 | MTR_8g014520 | 37.624 | 101 | 46 | 2 | 69 | 152 | 157 | 257 | 6.94e-13 | 64.7 |
MS.gene71773.t1 | MTR_8g014520 | 37.624 | 101 | 46 | 2 | 69 | 152 | 157 | 257 | 7.64e-13 | 64.7 |
MS.gene71773.t1 | MTR_8g067530 | 31.081 | 148 | 76 | 5 | 25 | 152 | 196 | 337 | 8.05e-13 | 65.1 |
MS.gene71773.t1 | MTR_2g101500 | 30.612 | 147 | 83 | 4 | 23 | 152 | 163 | 307 | 1.00e-12 | 64.7 |
MS.gene71773.t1 | MTR_4g115075 | 34.524 | 84 | 48 | 1 | 69 | 152 | 129 | 205 | 4.09e-12 | 62.0 |
MS.gene71773.t1 | MTR_8g103030 | 27.879 | 165 | 88 | 4 | 16 | 152 | 113 | 274 | 5.92e-12 | 62.4 |
MS.gene71773.t1 | MTR_1g080860 | 32.374 | 139 | 73 | 4 | 33 | 152 | 98 | 234 | 6.79e-12 | 61.6 |
MS.gene71773.t1 | MTR_1g080860 | 32.374 | 139 | 73 | 4 | 33 | 152 | 98 | 234 | 9.87e-12 | 61.6 |
MS.gene71773.t1 | MTR_2g100780 | 34.951 | 103 | 48 | 2 | 69 | 152 | 149 | 251 | 3.25e-11 | 60.1 |
MS.gene71773.t1 | MTR_2g100780 | 34.951 | 103 | 48 | 2 | 69 | 152 | 149 | 251 | 3.50e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71773.t1 | AT2G01200 | 50.000 | 162 | 72 | 2 | 2 | 154 | 24 | 185 | 1.59e-51 | 163 |
MS.gene71773.t1 | AT2G01200 | 50.000 | 162 | 72 | 2 | 2 | 154 | 24 | 185 | 1.59e-51 | 163 |
MS.gene71773.t1 | AT1G15050 | 51.007 | 149 | 45 | 2 | 6 | 154 | 27 | 147 | 1.80e-46 | 149 |
MS.gene71773.t1 | AT1G15050 | 51.007 | 149 | 45 | 2 | 6 | 154 | 59 | 179 | 2.43e-46 | 149 |
MS.gene71773.t1 | AT2G33310 | 44.681 | 94 | 42 | 1 | 69 | 152 | 130 | 223 | 7.79e-21 | 85.9 |
MS.gene71773.t1 | AT2G33310 | 44.681 | 94 | 42 | 1 | 69 | 152 | 130 | 223 | 7.79e-21 | 85.9 |
MS.gene71773.t1 | AT2G33310 | 44.681 | 94 | 42 | 1 | 69 | 152 | 131 | 224 | 8.18e-21 | 85.9 |
MS.gene71773.t1 | AT1G04550 | 45.556 | 90 | 42 | 1 | 68 | 150 | 125 | 214 | 2.25e-19 | 82.0 |
MS.gene71773.t1 | AT4G28640 | 40.206 | 97 | 45 | 3 | 69 | 152 | 138 | 234 | 2.48e-14 | 68.6 |
MS.gene71773.t1 | AT4G28640 | 40.206 | 97 | 45 | 3 | 69 | 152 | 138 | 234 | 2.65e-14 | 68.6 |
MS.gene71773.t1 | AT4G28640 | 40.206 | 97 | 45 | 3 | 69 | 152 | 138 | 234 | 8.28e-14 | 67.8 |
MS.gene71773.t1 | AT3G62100 | 43.529 | 85 | 47 | 1 | 69 | 152 | 84 | 168 | 8.79e-14 | 65.9 |
MS.gene71773.t1 | AT1G52830 | 37.634 | 93 | 57 | 1 | 62 | 154 | 88 | 179 | 9.85e-14 | 65.9 |
MS.gene71773.t1 | AT2G46990 | 41.111 | 90 | 52 | 1 | 69 | 157 | 86 | 175 | 1.34e-13 | 65.5 |
MS.gene71773.t1 | AT3G17600 | 40.000 | 85 | 48 | 1 | 69 | 153 | 74 | 155 | 1.64e-13 | 64.7 |
MS.gene71773.t1 | AT3G15540 | 39.773 | 88 | 51 | 2 | 68 | 154 | 97 | 183 | 1.04e-12 | 63.5 |
MS.gene71773.t1 | AT3G16500 | 31.148 | 122 | 70 | 3 | 44 | 152 | 129 | 249 | 2.59e-12 | 63.2 |
MS.gene71773.t1 | AT3G16500 | 31.148 | 122 | 70 | 3 | 44 | 152 | 129 | 249 | 2.78e-12 | 63.2 |
MS.gene71773.t1 | AT1G51950 | 34.343 | 99 | 48 | 2 | 69 | 152 | 151 | 247 | 4.90e-12 | 62.4 |
MS.gene71773.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 16 | 152 | 144 | 300 | 5.13e-12 | 62.8 |
MS.gene71773.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 16 | 152 | 144 | 300 | 5.13e-12 | 62.8 |
MS.gene71773.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 16 | 152 | 144 | 300 | 5.40e-12 | 62.8 |
MS.gene71773.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 16 | 152 | 144 | 300 | 5.40e-12 | 62.8 |
MS.gene71773.t1 | AT2G22670 | 28.302 | 159 | 90 | 6 | 16 | 152 | 161 | 317 | 5.45e-12 | 62.8 |
MS.gene71773.t1 | AT5G25890 | 33.708 | 89 | 54 | 1 | 69 | 157 | 82 | 165 | 5.48e-12 | 61.2 |
MS.gene71773.t1 | AT1G04240 | 32.258 | 124 | 70 | 3 | 33 | 152 | 65 | 178 | 1.58e-11 | 60.1 |
MS.gene71773.t1 | AT4G29080 | 30.000 | 160 | 89 | 6 | 16 | 152 | 127 | 286 | 4.31e-11 | 60.1 |
MS.gene71773.t1 | AT1G04240 | 32.258 | 124 | 70 | 3 | 33 | 152 | 165 | 278 | 4.33e-11 | 60.1 |
MS.gene71773.t1 | AT5G65670 | 27.941 | 136 | 80 | 4 | 33 | 152 | 184 | 317 | 5.28e-11 | 60.1 |
MS.gene71773.t1 | AT5G65670 | 27.941 | 136 | 80 | 4 | 33 | 152 | 184 | 317 | 5.85e-11 | 59.7 |
MS.gene71773.t1 | AT1G04100 | 33.929 | 112 | 58 | 2 | 61 | 156 | 145 | 256 | 7.35e-11 | 59.3 |
MS.gene71773.t1 | AT5G43700 | 30.714 | 140 | 81 | 5 | 17 | 152 | 47 | 174 | 7.38e-11 | 58.2 |
MS.gene71773.t1 | AT3G04730 | 36.364 | 99 | 49 | 2 | 68 | 152 | 119 | 217 | 7.54e-11 | 58.9 |
Find 37 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGCTTGAATTCTTCATATT+AGG | 0.248292 | 1.3:-74562453 | None:intergenic |
GGTATAAGATTATTTCAATC+TGG | 0.393434 | 1.3:+74562923 | MS.gene71773:CDS |
AAAATTTGTATTCTTGATCA+TGG | 0.399284 | 1.3:+74562588 | MS.gene71773:CDS |
ATTGATCTTGGTCTTAGTCT+TGG | 0.403384 | 1.3:+74561945 | MS.gene71773:CDS |
TCAGGTAGCCAATCAGTATC+TGG | 0.404191 | 1.3:+74562902 | MS.gene71773:intron |
AGTGTATGATGATGACCTTA+TGG | 0.418403 | 1.3:+74562425 | MS.gene71773:intron |
ATTCAATTAGAAGACATGTT+TGG | 0.424570 | 1.3:+74562630 | MS.gene71773:CDS |
AAACTTTGATGAAGAGATAG+AGG | 0.443595 | 1.3:+74562500 | MS.gene71773:CDS |
ACAAGGATAGTGAAGACAAT+TGG | 0.458182 | 1.3:+74562966 | MS.gene71773:CDS |
ATCTTATACCAGATACTGAT+TGG | 0.459323 | 1.3:-74562910 | None:intergenic |
TCATATTAGGCCAATCCATA+AGG | 0.461452 | 1.3:-74562440 | None:intergenic |
AAACATGTCTTCTAATTGAA+TGG | 0.463927 | 1.3:-74562628 | None:intergenic |
GATGATGGCATAATTGATCT+TGG | 0.492063 | 1.3:+74561933 | MS.gene71773:CDS |
AAGCCCATCTCTCATTGCTC+TGG | 0.494319 | 1.3:-74562527 | None:intergenic |
ATGTGAAGGTTAACATGGAT+GGG | 0.495408 | 1.3:+74562550 | MS.gene71773:CDS |
TATGTGAAGGTTAACATGGA+TGG | 0.499449 | 1.3:+74562549 | MS.gene71773:CDS |
TAGAATGTGTGAAAAGGCTA+AGG | 0.521536 | 1.3:+74563121 | MS.gene71773:CDS |
GGTCCAGAGCAATGAGAGAT+GGG | 0.537453 | 1.3:+74562524 | MS.gene71773:CDS |
GGGTCCAGAGCAATGAGAGA+TGG | 0.546013 | 1.3:+74562523 | MS.gene71773:CDS |
AACATGGATGGGGTCTCCAT+TGG | 0.556874 | 1.3:+74562561 | MS.gene71773:CDS |
TATCAGGACAAACATGATGA+TGG | 0.557533 | 1.3:+74561918 | None:intergenic |
AGTTTGTAGAATGTGTGAAA+AGG | 0.572178 | 1.3:+74563115 | MS.gene71773:CDS |
AACTTTGATGAAGAGATAGA+GGG | 0.577407 | 1.3:+74562501 | MS.gene71773:CDS |
GGATGAACACATACTTCCAC+AGG | 0.585852 | 1.3:-74563006 | None:intergenic |
AGGATAGTGAAGACAATTGG+AGG | 0.586064 | 1.3:+74562969 | MS.gene71773:CDS |
GGACTGTTGGTGATGTCCTG+TGG | 0.599377 | 1.3:+74562990 | MS.gene71773:CDS |
TGGATGGGGTCTCCATTGGT+AGG | 0.603415 | 1.3:+74562565 | MS.gene71773:CDS |
GGCTTATGTGAAGGTTAACA+TGG | 0.603593 | 1.3:+74562545 | MS.gene71773:CDS |
AGGATTGCAAGAAAGAATGC+AGG | 0.603908 | 1.3:+74563141 | MS.gene71773:CDS |
TGTGAAGGTTAACATGGATG+GGG | 0.610516 | 1.3:+74562551 | MS.gene71773:CDS |
AGAGTACTCATTATTCTACA+AGG | 0.631045 | 1.3:+74562949 | MS.gene71773:CDS |
ATGATGATGACCTTATGGAT+TGG | 0.632385 | 1.3:+74562430 | MS.gene71773:CDS |
TGAGAGATGGGCTTATGTGA+AGG | 0.637438 | 1.3:+74562536 | MS.gene71773:CDS |
GAAGACAATTGGAGGACTGT+TGG | 0.640837 | 1.3:+74562977 | MS.gene71773:CDS |
ATTTGTATTCTTGATCATGG+AGG | 0.642489 | 1.3:+74562591 | MS.gene71773:CDS |
ACTTTGATGAAGAGATAGAG+GGG | 0.683990 | 1.3:+74562502 | MS.gene71773:CDS |
CTTTGATGAAGAGATAGAGG+GGG | 0.700859 | 1.3:+74562503 | MS.gene71773:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTGAAACAATGAACA+AGG | - | chr1.3:74562023-74562042 | None:intergenic | 20.0% |
!! | AAAATTGAAACAATGAACAA+GGG | - | chr1.3:74562022-74562041 | None:intergenic | 20.0% |
!! | AAAATTTGTATTCTTGATCA+TGG | + | chr1.3:74562588-74562607 | MS.gene71773:CDS | 20.0% |
!!! | AAAACTTTTTAAAATGATGG+GGG | - | chr1.3:74562084-74562103 | None:intergenic | 20.0% |
!!! | AGAAAAGTGTTAAATGAAAA+GGG | - | chr1.3:74563030-74563049 | None:intergenic | 20.0% |
!!! | AGTTTGTATCAATCATTTTT+AGG | - | chr1.3:74562303-74562322 | None:intergenic | 20.0% |
!!! | CAAAACTTTTTAAAATGATG+GGG | - | chr1.3:74562085-74562104 | None:intergenic | 20.0% |
!!! | CTACATTTTATTATACTAGT+TGG | + | chr1.3:74563048-74563067 | MS.gene71773:intron | 20.0% |
!!! | GCAAAACTTTTTAAAATGAT+GGG | - | chr1.3:74562086-74562105 | None:intergenic | 20.0% |
!!! | TAGAAAAGTGTTAAATGAAA+AGG | - | chr1.3:74563031-74563050 | None:intergenic | 20.0% |
!!! | TGCAAAACTTTTTAAAATGA+TGG | - | chr1.3:74562087-74562106 | None:intergenic | 20.0% |
!!! | TTTGTAATGTTTTGTTAACA+GGG | + | chr1.3:74563092-74563111 | MS.gene71773:intron | 20.0% |
! | AAAACACTGTATGAAAAATG+AGG | - | chr1.3:74562234-74562253 | None:intergenic | 25.0% |
! | AAACATGTCTTCTAATTGAA+TGG | - | chr1.3:74562631-74562650 | None:intergenic | 25.0% |
! | AAATTGAAACAATGAACAAG+GGG | - | chr1.3:74562021-74562040 | None:intergenic | 25.0% |
! | ATTCAATTAGAAGACATGTT+TGG | + | chr1.3:74562630-74562649 | MS.gene71773:CDS | 25.0% |
! | GGTATAAGATTATTTCAATC+TGG | + | chr1.3:74562923-74562942 | MS.gene71773:CDS | 25.0% |
! | TAACTCACTCAAATAAGAAA+AGG | - | chr1.3:74562051-74562070 | None:intergenic | 25.0% |
! | TAGTGTAATGTAATGATGTT+TGG | + | chr1.3:74562398-74562417 | MS.gene71773:intron | 25.0% |
!! | AATACAAATTTTCCTACCAA+TGG | - | chr1.3:74562580-74562599 | None:intergenic | 25.0% |
!! | ATACAACTTATCAGTCATTT+TGG | - | chr1.3:74562871-74562890 | None:intergenic | 25.0% |
!!! | GTTTGTAATGTTTTGTTAAC+AGG | + | chr1.3:74563091-74563110 | MS.gene71773:intron | 25.0% |
AAAATGAACCGATACATTCA+TGG | + | chr1.3:74562813-74562832 | MS.gene71773:intron | 30.0% | |
AAACTTTGATGAAGAGATAG+AGG | + | chr1.3:74562500-74562519 | MS.gene71773:CDS | 30.0% | |
AACTGTTCACTTTGATAAGA+TGG | - | chr1.3:74562706-74562725 | None:intergenic | 30.0% | |
AACTTTGATGAAGAGATAGA+GGG | + | chr1.3:74562501-74562520 | MS.gene71773:CDS | 30.0% | |
AGTTTGTAGAATGTGTGAAA+AGG | + | chr1.3:74563115-74563134 | MS.gene71773:CDS | 30.0% | |
ATCTTATACCAGATACTGAT+TGG | - | chr1.3:74562913-74562932 | None:intergenic | 30.0% | |
ATTTGTATTCTTGATCATGG+AGG | + | chr1.3:74562591-74562610 | MS.gene71773:CDS | 30.0% | |
CTAAACTAAATACAGCAGTA+AGG | + | chr1.3:74562324-74562343 | MS.gene71773:intron | 30.0% | |
CTATGTTAACACTTCATCTT+AGG | + | chr1.3:74563164-74563183 | MS.gene71773:CDS | 30.0% | |
GTGCTTGAATTCTTCATATT+AGG | - | chr1.3:74562456-74562475 | None:intergenic | 30.0% | |
GTTGTATAATTACCCTATTC+AGG | + | chr1.3:74562884-74562903 | MS.gene71773:intron | 30.0% | |
! | AGAGTACTCATTATTCTACA+AGG | + | chr1.3:74562949-74562968 | MS.gene71773:CDS | 30.0% |
! | TCTCTTCATCAAAGTTTTCA+TGG | - | chr1.3:74562497-74562516 | None:intergenic | 30.0% |
ACAAGGATAGTGAAGACAAT+TGG | + | chr1.3:74562966-74562985 | MS.gene71773:CDS | 35.0% | |
ACAAGTGCATTATTGACACA+AGG | - | chr1.3:74562666-74562685 | None:intergenic | 35.0% | |
ACTTTGATGAAGAGATAGAG+GGG | + | chr1.3:74562502-74562521 | MS.gene71773:CDS | 35.0% | |
ATGTGAAGGTTAACATGGAT+GGG | + | chr1.3:74562550-74562569 | MS.gene71773:CDS | 35.0% | |
TAGAATGTGTGAAAAGGCTA+AGG | + | chr1.3:74563121-74563140 | MS.gene71773:CDS | 35.0% | |
TATGTGAAGGTTAACATGGA+TGG | + | chr1.3:74562549-74562568 | MS.gene71773:CDS | 35.0% | |
TCATATTAGGCCAATCCATA+AGG | - | chr1.3:74562443-74562462 | None:intergenic | 35.0% | |
! | AGTGTATGATGATGACCTTA+TGG | + | chr1.3:74562425-74562444 | MS.gene71773:intron | 35.0% |
! | ATGATGATGACCTTATGGAT+TGG | + | chr1.3:74562430-74562449 | MS.gene71773:CDS | 35.0% |
! | GATGATGGCATAATTGATCT+TGG | + | chr1.3:74561933-74561952 | MS.gene71773:CDS | 35.0% |
!! | ATTGATCTTGGTCTTAGTCT+TGG | + | chr1.3:74561945-74561964 | MS.gene71773:CDS | 35.0% |
AGGATAGTGAAGACAATTGG+AGG | + | chr1.3:74562969-74562988 | MS.gene71773:CDS | 40.0% | |
AGGATTGCAAGAAAGAATGC+AGG | + | chr1.3:74563141-74563160 | MS.gene71773:CDS | 40.0% | |
CGAAGAGTCCATGAATGTAT+CGG | - | chr1.3:74562824-74562843 | None:intergenic | 40.0% | |
CTTTGATGAAGAGATAGAGG+GGG | + | chr1.3:74562503-74562522 | MS.gene71773:CDS | 40.0% | |
GGCTTATGTGAAGGTTAACA+TGG | + | chr1.3:74562545-74562564 | MS.gene71773:CDS | 40.0% | |
TGTGAAGGTTAACATGGATG+GGG | + | chr1.3:74562551-74562570 | MS.gene71773:CDS | 40.0% | |
! | ACTGATTGGCTACCTGAATA+GGG | - | chr1.3:74562899-74562918 | None:intergenic | 40.0% |
! | TACTGATTGGCTACCTGAAT+AGG | - | chr1.3:74562900-74562919 | None:intergenic | 40.0% |
GAAGACAATTGGAGGACTGT+TGG | + | chr1.3:74562977-74562996 | MS.gene71773:CDS | 45.0% | |
GGATGAACACATACTTCCAC+AGG | - | chr1.3:74563009-74563028 | None:intergenic | 45.0% | |
TCAGGTAGCCAATCAGTATC+TGG | + | chr1.3:74562902-74562921 | MS.gene71773:intron | 45.0% | |
! | TGAGAGATGGGCTTATGTGA+AGG | + | chr1.3:74562536-74562555 | MS.gene71773:CDS | 45.0% |
AACATGGATGGGGTCTCCAT+TGG | + | chr1.3:74562561-74562580 | MS.gene71773:CDS | 50.0% | |
AAGCCCATCTCTCATTGCTC+TGG | - | chr1.3:74562530-74562549 | None:intergenic | 50.0% | |
GGTCCAGAGCAATGAGAGAT+GGG | + | chr1.3:74562524-74562543 | MS.gene71773:CDS | 50.0% | |
GGGTCCAGAGCAATGAGAGA+TGG | + | chr1.3:74562523-74562542 | MS.gene71773:CDS | 55.0% | |
TGGATGGGGTCTCCATTGGT+AGG | + | chr1.3:74562565-74562584 | MS.gene71773:CDS | 55.0% | |
!! | GGACTGTTGGTGATGTCCTG+TGG | + | chr1.3:74562990-74563009 | MS.gene71773:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 74561924 | 74563185 | 74561924 | ID=MS.gene71773 |
chr1.3 | mRNA | 74561924 | 74563185 | 74561924 | ID=MS.gene71773.t1;Parent=MS.gene71773 |
chr1.3 | exon | 74561924 | 74562005 | 74561924 | ID=MS.gene71773.t1.exon1;Parent=MS.gene71773.t1 |
chr1.3 | CDS | 74561924 | 74562005 | 74561924 | ID=cds.MS.gene71773.t1;Parent=MS.gene71773.t1 |
chr1.3 | exon | 74562427 | 74562651 | 74562427 | ID=MS.gene71773.t1.exon2;Parent=MS.gene71773.t1 |
chr1.3 | CDS | 74562427 | 74562651 | 74562427 | ID=cds.MS.gene71773.t1;Parent=MS.gene71773.t1 |
chr1.3 | exon | 74562906 | 74563014 | 74562906 | ID=MS.gene71773.t1.exon3;Parent=MS.gene71773.t1 |
chr1.3 | CDS | 74562906 | 74563014 | 74562906 | ID=cds.MS.gene71773.t1;Parent=MS.gene71773.t1 |
chr1.3 | exon | 74563113 | 74563185 | 74563113 | ID=MS.gene71773.t1.exon4;Parent=MS.gene71773.t1 |
chr1.3 | CDS | 74563113 | 74563185 | 74563113 | ID=cds.MS.gene71773.t1;Parent=MS.gene71773.t1 |
Gene Sequence |
Protein sequence |