Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71888.t1 | XP_003608797.1 | 98.7 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 2.80E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71888.t1 | Q8L7W5 | 76.1 | 293 | 68 | 1 | 1 | 291 | 1 | 293 | 8.3e-136 | 484.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71888.t1 | G7JK82 | 98.7 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 2.0e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene71888 | -0.800637 | 1.31E-48 | -1.69E-46 |
| MS.gene051838 | MS.gene71888 | -0.840633 | 7.73E-58 | -1.69E-46 |
| MS.gene052414 | MS.gene71888 | -0.800419 | 1.45E-48 | -1.69E-46 |
| MS.gene055486 | MS.gene71888 | -0.813685 | 2.26E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene71888 | -0.812131 | 4.95E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene71888 | -0.802217 | 6.23E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene71888 | -0.814685 | 1.36E-51 | -1.69E-46 |
| MS.gene060872 | MS.gene71888 | 0.830703 | 2.53E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71888 | MS.gene027563 | PPI |
| MS.gene68324 | MS.gene71888 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71888.t1 | MTR_4g102060 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| MS.gene71888.t1 | MTR_7g074900 | 63.380 | 284 | 104 | 0 | 1 | 284 | 1 | 284 | 4.55e-143 | 405 |
| MS.gene71888.t1 | MTR_6g039970 | 41.667 | 276 | 150 | 4 | 22 | 296 | 6 | 271 | 1.04e-68 | 215 |
| MS.gene71888.t1 | MTR_8g063210 | 41.887 | 265 | 150 | 3 | 22 | 285 | 6 | 267 | 5.36e-67 | 211 |
| MS.gene71888.t1 | MTR_5g035190 | 43.651 | 252 | 138 | 3 | 33 | 283 | 17 | 265 | 1.62e-66 | 209 |
| MS.gene71888.t1 | MTR_5g035190 | 45.729 | 199 | 108 | 0 | 85 | 283 | 13 | 211 | 4.93e-63 | 198 |
| MS.gene71888.t1 | MTR_5g040320 | 31.788 | 151 | 94 | 4 | 129 | 274 | 101 | 247 | 1.44e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71888.t1 | AT4G12110 | 76.109 | 293 | 68 | 1 | 1 | 291 | 1 | 293 | 1.04e-175 | 488 |
| MS.gene71888.t1 | AT4G22756 | 74.247 | 299 | 73 | 2 | 1 | 295 | 1 | 299 | 1.11e-171 | 477 |
| MS.gene71888.t1 | AT4G22755 | 69.072 | 291 | 87 | 2 | 1 | 290 | 1 | 289 | 2.57e-156 | 438 |
| MS.gene71888.t1 | AT1G07420 | 42.642 | 265 | 144 | 4 | 19 | 282 | 3 | 260 | 6.32e-69 | 215 |
| MS.gene71888.t1 | AT2G29390 | 43.033 | 244 | 135 | 3 | 33 | 275 | 10 | 250 | 7.31e-66 | 207 |
| MS.gene71888.t1 | AT2G29390 | 41.473 | 258 | 147 | 3 | 19 | 275 | 3 | 257 | 9.06e-66 | 207 |
| MS.gene71888.t1 | AT1G07420 | 46.970 | 198 | 101 | 1 | 85 | 282 | 29 | 222 | 1.40e-64 | 203 |
| MS.gene71888.t1 | AT2G29390 | 45.550 | 191 | 104 | 0 | 85 | 275 | 26 | 216 | 9.65e-63 | 198 |
| MS.gene71888.t1 | AT2G29390 | 39.630 | 270 | 147 | 4 | 19 | 275 | 3 | 269 | 2.53e-62 | 199 |
| MS.gene71888.t1 | AT2G29390 | 47.222 | 180 | 91 | 1 | 102 | 281 | 1 | 176 | 7.23e-61 | 192 |
| MS.gene71888.t1 | AT2G29390 | 47.222 | 180 | 91 | 1 | 102 | 281 | 1 | 176 | 7.23e-61 | 192 |
| MS.gene71888.t1 | AT1G14290 | 29.224 | 219 | 142 | 6 | 64 | 274 | 30 | 243 | 7.37e-14 | 70.5 |
| MS.gene71888.t1 | AT1G14290 | 33.113 | 151 | 92 | 4 | 129 | 274 | 23 | 169 | 1.22e-12 | 65.9 |
Find 72 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGCGGAGATCTTGATTT+TGG | 0.150585 | 8.3:-19384009 | MS.gene71888:CDS |
| ACATATTGTGATTACATCTA+TGG | 0.218915 | 8.3:-19381972 | MS.gene71888:CDS |
| ATAGATTTCTGCATAATAAA+TGG | 0.221052 | 8.3:-19384103 | MS.gene71888:CDS |
| CTTGGACCGGCTATGGTTCC+TGG | 0.248242 | 8.3:-19383972 | MS.gene71888:CDS |
| TATTGTAGATGATTGGAATT+AGG | 0.278974 | 8.3:-19384214 | MS.gene71888:intron |
| ATTTATTATGCAGAAATCTA+TGG | 0.288607 | 8.3:+19384105 | None:intergenic |
| TATAGCAATTAAGCATTTCA+TGG | 0.305557 | 8.3:+19384373 | None:intergenic |
| CTGGTCACATGATTACATTT+TGG | 0.315803 | 8.3:-19383953 | MS.gene71888:CDS |
| AAAATGTTCTTCCTTGTTGT+TGG | 0.321889 | 8.3:-19384339 | MS.gene71888:CDS |
| TGGAGGATTATACGAATTAC+TGG | 0.338989 | 8.3:-19384130 | MS.gene71888:CDS |
| TGCTCAGCGCCACCATAAAA+TGG | 0.348188 | 8.3:+19382053 | None:intergenic |
| TGTGATTGTGATTACCTTGA+TGG | 0.355111 | 8.3:+19384290 | None:intergenic |
| TAGATTTCTGCATAATAAAT+GGG | 0.360869 | 8.3:-19384102 | MS.gene71888:CDS |
| GAAGAGAAAGTAATCGGATT+TGG | 0.370486 | 8.3:+19384521 | None:intergenic |
| ATGGAGAGATAAACGAACTT+TGG | 0.389544 | 8.3:+19384392 | None:intergenic |
| TGCGGCGCCTTATGCACATT+GGG | 0.401426 | 8.3:-19384027 | MS.gene71888:CDS |
| CGAGGGAGAAGATGAGGAAG+AGG | 0.414192 | 8.3:+19384481 | None:intergenic |
| TGGAGAGATAAACGAACTTT+GGG | 0.417171 | 8.3:+19384393 | None:intergenic |
| TCTCGGCGTCGTGGAGAGAT+TGG | 0.432872 | 8.3:+19384601 | None:intergenic |
| CATGAATATCAAGCTCCAAT+TGG | 0.447424 | 8.3:-19384053 | MS.gene71888:CDS |
| TGGAAGATCATATAATGAAC+AGG | 0.447595 | 8.3:-19381589 | MS.gene71888:CDS |
| ATCTCCGCCCAATGTGCATA+AGG | 0.458453 | 8.3:+19384020 | None:intergenic |
| TAAGGCGCCGCAAATCCAAT+TGG | 0.460635 | 8.3:+19384038 | None:intergenic |
| ATGACAGAAGAGAAAGTAAT+CGG | 0.467469 | 8.3:+19384515 | None:intergenic |
| CACGATTACCATCATTATGT+TGG | 0.470556 | 8.3:-19382029 | MS.gene71888:CDS |
| TTGCGGCGCCTTATGCACAT+TGG | 0.470678 | 8.3:-19384028 | MS.gene71888:CDS |
| GTAGTTGAACCATAGGGTTT+CGG | 0.479091 | 8.3:+19384551 | None:intergenic |
| TCAAGCTCCAATTGGATTTG+CGG | 0.480625 | 8.3:-19384045 | MS.gene71888:CDS |
| CGTTTCTTATCCTTCCATCA+AGG | 0.481297 | 8.3:-19384304 | MS.gene71888:intron |
| CTGAAGGAAGATTCGACAAA+TGG | 0.482061 | 8.3:-19381624 | MS.gene71888:CDS |
| GAACCATAGGGTTTCGGCGA+AGG | 0.497179 | 8.3:+19384557 | None:intergenic |
| GAGGAACGAGGGAGAAGATG+AGG | 0.498130 | 8.3:+19384475 | None:intergenic |
| TCACCTTCGCCGAAACCCTA+TGG | 0.501858 | 8.3:-19384560 | MS.gene71888:CDS |
| TCAGAAGAAGATACTTCAAA+AGG | 0.505907 | 8.3:-19381824 | MS.gene71888:intron |
| ATGTCAGGTATGACTTCCCC+TGG | 0.513299 | 8.3:-19382094 | MS.gene71888:intron |
| TAGATGATTGGAATTAGGAC+GGG | 0.513499 | 8.3:-19384209 | MS.gene71888:CDS |
| ACAAATGGTGCAGCGCGGAA+TGG | 0.520094 | 8.3:-19381609 | MS.gene71888:CDS |
| TAGCGGAGTAGTTGAACCAT+AGG | 0.521461 | 8.3:+19384544 | None:intergenic |
| AAACTGATGCAAAATTGCTC+TGG | 0.537490 | 8.3:+19381997 | None:intergenic |
| GTAGATGATTGGAATTAGGA+CGG | 0.538786 | 8.3:-19384210 | MS.gene71888:intron |
| GATTACCATCATTATGTTGG+AGG | 0.541524 | 8.3:-19382026 | MS.gene71888:CDS |
| GCGTCGTGGAGAGATTGGTA+AGG | 0.542904 | 8.3:+19384606 | None:intergenic |
| ATTGCGACCGAGAGAGATCT+CGG | 0.545066 | 8.3:+19384584 | None:intergenic |
| CACGACGCCGAGATCTCTCT+CGG | 0.545396 | 8.3:-19384591 | MS.gene71888:CDS |
| ATGTGACCAGGAACCATAGC+CGG | 0.548009 | 8.3:+19383966 | None:intergenic |
| GAGATAAACGAACTTTGGGC+TGG | 0.549681 | 8.3:+19384397 | None:intergenic |
| ACGGGGTTACCGTTACCGTC+TGG | 0.551559 | 8.3:-19384191 | MS.gene71888:CDS |
| TTTGTCCTCCAACATAATGA+TGG | 0.557552 | 8.3:+19382021 | None:intergenic |
| GTACCCGCTGTGTGTATCAA+TGG | 0.560522 | 8.3:+19383902 | None:intergenic |
| AAAGTAATCGGATTTGGTAG+CGG | 0.569740 | 8.3:+19384527 | None:intergenic |
| TGGATCTTGTACTCATCGAA+AGG | 0.573332 | 8.3:+19384417 | None:intergenic |
| AAACGAGTGGAAGAGGAACG+AGG | 0.585179 | 8.3:+19384463 | None:intergenic |
| GGCGCCTTATGCACATTGGG+CGG | 0.588545 | 8.3:-19384024 | MS.gene71888:CDS |
| AGCGGAGTAGTTGAACCATA+GGG | 0.591782 | 8.3:+19384545 | None:intergenic |
| GGATAAGAAACGAGTTGAAG+AGG | 0.594918 | 8.3:+19384315 | None:intergenic |
| GGATCTTGTACTCATCGAAA+GGG | 0.594949 | 8.3:+19384418 | None:intergenic |
| ATCTCAAATCCAGACGGTAA+CGG | 0.597339 | 8.3:+19384182 | None:intergenic |
| CGAGAGAGATCTCGGCGTCG+TGG | 0.610673 | 8.3:+19384592 | None:intergenic |
| CGTCGTGGAGAGATTGGTAA+GGG | 0.613592 | 8.3:+19384607 | None:intergenic |
| GTGTATCAATGGCTTCAACT+TGG | 0.614849 | 8.3:+19383913 | None:intergenic |
| AGATTTCTGCATAATAAATG+GGG | 0.616388 | 8.3:-19384101 | MS.gene71888:CDS |
| CAAAATGTAATCATGTGACC+AGG | 0.621665 | 8.3:+19383954 | None:intergenic |
| AGATGATTGGAATTAGGACG+GGG | 0.631542 | 8.3:-19384208 | MS.gene71888:CDS |
| AAGCCATTGATACACACAGC+GGG | 0.635131 | 8.3:-19383905 | MS.gene71888:intron |
| ATTGTGATTACCTTGATGGA+AGG | 0.636565 | 8.3:+19384294 | None:intergenic |
| ATAGCCGGTCCAAGAAAAGA+CGG | 0.640967 | 8.3:+19383981 | None:intergenic |
| AACGAGTGGAAGAGGAACGA+GGG | 0.641822 | 8.3:+19384464 | None:intergenic |
| GATAATATCTCAAATCCAGA+CGG | 0.645775 | 8.3:+19384176 | None:intergenic |
| GTTGAAGAGGACCAACAACA+AGG | 0.668088 | 8.3:+19384328 | None:intergenic |
| ATTCGACAAATGGTGCAGCG+CGG | 0.713447 | 8.3:-19381614 | MS.gene71888:CDS |
| TTACATCTATGGAACAGACA+AGG | 0.732719 | 8.3:-19381961 | MS.gene71888:intron |
| GAAGCCATTGATACACACAG+CGG | 0.790862 | 8.3:-19383906 | MS.gene71888:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATCAACAAAAAA+AGG | + | chr8.3:19382321-19382340 | None:intergenic | 10.0% |
| !! | ATAATAAGTTAAATATGAAA+TGG | - | chr8.3:19383274-19383293 | MS.gene71888:intron | 10.0% |
| !! | ATAATACACAAAAAAATCAA+AGG | + | chr8.3:19382466-19382485 | None:intergenic | 15.0% |
| !!! | ACAAAATATATTCCATTTTA+TGG | - | chr8.3:19384116-19384135 | MS.gene71888:CDS | 15.0% |
| !!! | ATAAAATGGAATATATTTTG+TGG | + | chr8.3:19384117-19384136 | None:intergenic | 15.0% |
| !!! | ATAGATTGTCTTATTATATT+TGG | - | chr8.3:19383788-19383807 | MS.gene71888:intron | 15.0% |
| !!! | ATTTAACTTATTATGAGAAA+AGG | + | chr8.3:19383268-19383287 | None:intergenic | 15.0% |
| !!! | TAAAATGGAATATATTTTGT+GGG | + | chr8.3:19384116-19384135 | None:intergenic | 15.0% |
| !!! | TTTAAAATAGTGATTATATC+TGG | - | chr8.3:19383858-19383877 | MS.gene71888:intron | 15.0% |
| !! | AAAAAAATCAAAGGAGTAAA+AGG | + | chr8.3:19382457-19382476 | None:intergenic | 20.0% |
| !! | AAAAATTTGAAGGACAATTT+AGG | - | chr8.3:19383408-19383427 | MS.gene71888:intron | 20.0% |
| !! | AAAATTTGAAGGACAATTTA+GGG | - | chr8.3:19383409-19383428 | MS.gene71888:intron | 20.0% |
| !! | AAACAAAAAAAATGCTAACT+TGG | - | chr8.3:19383297-19383316 | MS.gene71888:intron | 20.0% |
| !! | AAGACACAATAATCTAAATA+CGG | + | chr8.3:19383364-19383383 | None:intergenic | 20.0% |
| !! | AATTATAACCGTAACTAAAA+CGG | + | chr8.3:19381935-19381954 | None:intergenic | 20.0% |
| !! | ACTAAACAAAATGAAAAATG+TGG | + | chr8.3:19384474-19384493 | None:intergenic | 20.0% |
| !! | ATAGATTTCTGCATAATAAA+TGG | - | chr8.3:19382078-19382097 | MS.gene71888:CDS | 20.0% |
| !! | ATATAGTTGAATGTCAAAAA+TGG | - | chr8.3:19383646-19383665 | MS.gene71888:intron | 20.0% |
| !! | ATATCTATCTAATGAAAAAG+AGG | + | chr8.3:19383991-19384010 | None:intergenic | 20.0% |
| !! | ATTTATTATGCAGAAATCTA+TGG | + | chr8.3:19382079-19382098 | None:intergenic | 20.0% |
| !! | CAATTGAATGTAAAAATTGT+AGG | - | chr8.3:19383732-19383751 | MS.gene71888:intron | 20.0% |
| !! | CATTTAAAGACAATTTAAAC+GGG | + | chr8.3:19383333-19383352 | None:intergenic | 20.0% |
| !! | CCATTTAAAGACAATTTAAA+CGG | + | chr8.3:19383334-19383353 | None:intergenic | 20.0% |
| !! | GAATATTAGGTAAAAGATAA+AGG | + | chr8.3:19383187-19383206 | None:intergenic | 20.0% |
| !! | GATTATTAGGAAAAAGATAA+AGG | - | chr8.3:19383570-19383589 | MS.gene71888:intron | 20.0% |
| !! | GTTGAAGAAAAAAAATTTGA+AGG | - | chr8.3:19383398-19383417 | MS.gene71888:intron | 20.0% |
| !! | GTTTCTTAGTAAGATTATTA+GGG | - | chr8.3:19382522-19382541 | MS.gene71888:intron | 20.0% |
| !! | TAGATTTCTGCATAATAAAT+GGG | - | chr8.3:19382079-19382098 | MS.gene71888:CDS | 20.0% |
| !! | TATCTATCTAATGAAAAAGA+GGG | + | chr8.3:19383990-19384009 | None:intergenic | 20.0% |
| !! | TGTTTCTTAGTAAGATTATT+AGG | - | chr8.3:19382521-19382540 | MS.gene71888:intron | 20.0% |
| !!! | AAATATATTCCATTTTATGG+TGG | - | chr8.3:19384119-19384138 | MS.gene71888:CDS | 20.0% |
| !!! | ATTATTAGTGTATTTTTTGG+TGG | - | chr8.3:19382031-19382050 | MS.gene71888:CDS | 20.0% |
| !!! | CTTTTACCTAATATTCATTT+CGG | - | chr8.3:19383191-19383210 | MS.gene71888:intron | 20.0% |
| !!! | CTTTTTCCTAATAATCATTT+TGG | + | chr8.3:19383566-19383585 | None:intergenic | 20.0% |
| !!! | GCAATTATTAGTGTATTTTT+TGG | - | chr8.3:19382028-19382047 | MS.gene71888:CDS | 20.0% |
| !!! | TTAAATTACCGTTTTAGTTA+CGG | - | chr8.3:19381924-19381943 | MS.gene71888:intron | 20.0% |
| !!! | TTTTGTTTATTGTAGATGAT+TGG | - | chr8.3:19381960-19381979 | MS.gene71888:intron | 20.0% |
| ! | AAAATAGTGATTATATCTGG+TGG | - | chr8.3:19383861-19383880 | MS.gene71888:intron | 25.0% |
| ! | AAAGGACCAAAATGATTATT+AGG | - | chr8.3:19383557-19383576 | MS.gene71888:intron | 25.0% |
| ! | AACAAAATGAAAAATGTGGA+AGG | + | chr8.3:19384470-19384489 | None:intergenic | 25.0% |
| ! | AAGCAATCAAACATAAAAGT+TGG | + | chr8.3:19384057-19384076 | None:intergenic | 25.0% |
| ! | ACATATTGTGATTACATCTA+TGG | - | chr8.3:19384209-19384228 | MS.gene71888:CDS | 25.0% |
| ! | AGATTTCTGCATAATAAATG+GGG | - | chr8.3:19382080-19382099 | MS.gene71888:CDS | 25.0% |
| ! | AGCAATCAAACATAAAAGTT+GGG | + | chr8.3:19384056-19384075 | None:intergenic | 25.0% |
| ! | AGTCCAATTAAAAATATTCC+TGG | - | chr8.3:19382927-19382946 | MS.gene71888:intron | 25.0% |
| ! | ATCTATCTAATGAAAAAGAG+GGG | + | chr8.3:19383989-19384008 | None:intergenic | 25.0% |
| ! | ATTACTTTATGCTGAAAGTT+CGG | - | chr8.3:19382776-19382795 | MS.gene71888:intron | 25.0% |
| ! | CCGTTTAAATTGTCTTTAAA+TGG | - | chr8.3:19383331-19383350 | MS.gene71888:intron | 25.0% |
| ! | TATAGCAATTAAGCATTTCA+TGG | + | chr8.3:19381811-19381830 | None:intergenic | 25.0% |
| ! | TATTGTAGATGATTGGAATT+AGG | - | chr8.3:19381967-19381986 | MS.gene71888:CDS | 25.0% |
| ! | TGTCTGTAGGATTTAATATT+CGG | - | chr8.3:19383932-19383951 | MS.gene71888:CDS | 25.0% |
| ! | TTAAGACCGAAATGAATATT+AGG | + | chr8.3:19383200-19383219 | None:intergenic | 25.0% |
| !! | TAGAAACTTTTTACAAGCTT+TGG | - | chr8.3:19383041-19383060 | MS.gene71888:intron | 25.0% |
| !!! | AAAAAATGTTGACTTAGCAA+TGG | + | chr8.3:19383486-19383505 | None:intergenic | 25.0% |
| !!! | ACATTAAGTGTTCTAAAAAG+AGG | + | chr8.3:19382877-19382896 | None:intergenic | 25.0% |
| !!! | TGTCCAGGAATATTTTTAAT+TGG | + | chr8.3:19382933-19382952 | None:intergenic | 25.0% |
| AAAAGGAAAATGACAGAAAG+TGG | + | chr8.3:19382304-19382323 | None:intergenic | 30.0% | |
| AAGAAACCTGTTTATGATCT+TGG | - | chr8.3:19382807-19382826 | MS.gene71888:intron | 30.0% | |
| ACTACAGCATAAACTTTCAA+AGG | + | chr8.3:19382958-19382977 | None:intergenic | 30.0% | |
| AGAAACCTGTTTATGATCTT+GGG | - | chr8.3:19382808-19382827 | MS.gene71888:intron | 30.0% | |
| ATCATGCTGATGTTTATCAA+TGG | + | chr8.3:19383961-19383980 | None:intergenic | 30.0% | |
| ATGACAGAAGAGAAAGTAAT+CGG | + | chr8.3:19381669-19381688 | None:intergenic | 30.0% | |
| ATTACGTCCAATTGTTTGAA+TGG | + | chr8.3:19382753-19382772 | None:intergenic | 30.0% | |
| CAGCTAAATCAATTCACAAA+AGG | + | chr8.3:19384540-19384559 | None:intergenic | 30.0% | |
| GATAATATCTCAAATCCAGA+CGG | + | chr8.3:19382008-19382027 | None:intergenic | 30.0% | |
| TAACTGTAGAAGCGAATTAA+AGG | + | chr8.3:19383686-19383705 | None:intergenic | 30.0% | |
| TACTCACTTGGAAAAGATAA+AGG | - | chr8.3:19383539-19383558 | MS.gene71888:intron | 30.0% | |
| TAGAAGCGAATTAAAGGAAT+TGG | + | chr8.3:19383680-19383699 | None:intergenic | 30.0% | |
| TATGTGAATATGAAGTGAGA+TGG | + | chr8.3:19383118-19383137 | None:intergenic | 30.0% | |
| TCAGAAGAAGATACTTCAAA+AGG | - | chr8.3:19384357-19384376 | MS.gene71888:CDS | 30.0% | |
| TCATAAACAGGTTTCTTCTA+AGG | + | chr8.3:19382804-19382823 | None:intergenic | 30.0% | |
| TCTATCTAATGAAAAAGAGG+GGG | + | chr8.3:19383988-19384007 | None:intergenic | 30.0% | |
| TGCTTTACTTATCATATGTC+AGG | - | chr8.3:19384072-19384091 | MS.gene71888:CDS | 30.0% | |
| TGGAAGATCATATAATGAAC+AGG | - | chr8.3:19384592-19384611 | MS.gene71888:CDS | 30.0% | |
| TTAAATCCTACAGACAAGAT+TGG | + | chr8.3:19383928-19383947 | None:intergenic | 30.0% | |
| TTACGTCCAATTGTTTGAAT+GGG | + | chr8.3:19382752-19382771 | None:intergenic | 30.0% | |
| TTCCAAAAGGACATTCATTA+CGG | + | chr8.3:19382352-19382371 | None:intergenic | 30.0% | |
| TTGATTTCAAGAAAAACGAG+TGG | + | chr8.3:19381734-19381753 | None:intergenic | 30.0% | |
| TTGCAAATCAATTTCACATG+TGG | + | chr8.3:19384301-19384320 | None:intergenic | 30.0% | |
| ! | AAAATGTTCTTCCTTGTTGT+TGG | - | chr8.3:19381842-19381861 | MS.gene71888:intron | 30.0% |
| ! | AATATATTTTGTGGGATTCC+AGG | + | chr8.3:19384108-19384127 | None:intergenic | 30.0% |
| ! | ATATATTTTGTGGGATTCCA+GGG | + | chr8.3:19384107-19384126 | None:intergenic | 30.0% |
| ! | GATCGATTTCGAAAAGATAA+AGG | + | chr8.3:19383236-19383255 | None:intergenic | 30.0% |
| ! | TGGAAACAGAATTTTGTTGA+AGG | - | chr8.3:19382848-19382867 | MS.gene71888:intron | 30.0% |
| ! | TTGTGAATTGATTTAGCTGA+AGG | - | chr8.3:19384541-19384560 | MS.gene71888:CDS | 30.0% |
| !! | TTTGCTTTGTTTATGTCACA+GGG | - | chr8.3:19384325-19384344 | MS.gene71888:CDS | 30.0% |
| !!! | ACATGATTACATTTTGGTTG+TGG | - | chr8.3:19382234-19382253 | MS.gene71888:intron | 30.0% |
| !!! | ATTAGTGTATTTTTTGGTGG+AGG | - | chr8.3:19382034-19382053 | MS.gene71888:CDS | 30.0% |
| !!! | GGGTTGCTTTTTACTTTTAT+GGG | - | chr8.3:19382403-19382422 | MS.gene71888:intron | 30.0% |
| !!! | GGTTGCTTTTTACTTTTATG+GGG | - | chr8.3:19382404-19382423 | MS.gene71888:intron | 30.0% |
| !!! | TGGGTTGCTTTTTACTTTTA+TGG | - | chr8.3:19382402-19382421 | MS.gene71888:intron | 30.0% |
| !!! | TTTTGCTTTGTTTATGTCAC+AGG | - | chr8.3:19384324-19384343 | MS.gene71888:CDS | 30.0% |
| AAACCTGTTTATGATCTTGG+GGG | - | chr8.3:19382810-19382829 | MS.gene71888:intron | 35.0% | |
| AAACTGATGCAAAATTGCTC+TGG | + | chr8.3:19384187-19384206 | None:intergenic | 35.0% | |
| AAACTTTCAAAGGTTTGTCC+AGG | + | chr8.3:19382948-19382967 | None:intergenic | 35.0% | |
| AAAGGACATTCATTACGGTT+TGG | + | chr8.3:19382347-19382366 | None:intergenic | 35.0% | |
| AAGCTAATTAAAGCCACAAC+AGG | + | chr8.3:19384421-19384440 | None:intergenic | 35.0% | |
| ACAAGCAAAGGTTGTTAAAG+TGG | + | chr8.3:19382601-19382620 | None:intergenic | 35.0% | |
| ACCGACAATAATTCTGCATT+TGG | + | chr8.3:19382726-19382745 | None:intergenic | 35.0% | |
| AGGACAAAAGTTTACTCACT+TGG | - | chr8.3:19383527-19383546 | MS.gene71888:intron | 35.0% | |
| AGTTCATATGCTGTGAGAAA+AGG | - | chr8.3:19383507-19383526 | MS.gene71888:intron | 35.0% | |
| ATCTCAAGGATCTGTAATAG+TGG | - | chr8.3:19382382-19382401 | MS.gene71888:intron | 35.0% | |
| ATGGAGAGATAAACGAACTT+TGG | + | chr8.3:19381792-19381811 | None:intergenic | 35.0% | |
| ATTGTGATTACCTTGATGGA+AGG | + | chr8.3:19381890-19381909 | None:intergenic | 35.0% | |
| CAAAATGTAATCATGTGACC+AGG | + | chr8.3:19382230-19382249 | None:intergenic | 35.0% | |
| CACGATTACCATCATTATGT+TGG | - | chr8.3:19384152-19384171 | MS.gene71888:CDS | 35.0% | |
| CATGAATATCAAGCTCCAAT+TGG | - | chr8.3:19382128-19382147 | MS.gene71888:intron | 35.0% | |
| CCAAATTTCAATGCAGAAAC+TGG | + | chr8.3:19384031-19384050 | None:intergenic | 35.0% | |
| CCAGTTTCTGCATTGAAATT+TGG | - | chr8.3:19384028-19384047 | MS.gene71888:CDS | 35.0% | |
| GAAACCTGTTTATGATCTTG+GGG | - | chr8.3:19382809-19382828 | MS.gene71888:intron | 35.0% | |
| GAAGAGAAAGTAATCGGATT+TGG | + | chr8.3:19381663-19381682 | None:intergenic | 35.0% | |
| GACTTAGCAATGGTTGTATA+AGG | + | chr8.3:19383476-19383495 | None:intergenic | 35.0% | |
| GATTACCATCATTATGTTGG+AGG | - | chr8.3:19384155-19384174 | MS.gene71888:CDS | 35.0% | |
| GCCAAATGCAGAATTATTGT+CGG | - | chr8.3:19382722-19382741 | MS.gene71888:intron | 35.0% | |
| GTAGATGATTGGAATTAGGA+CGG | - | chr8.3:19381971-19381990 | MS.gene71888:CDS | 35.0% | |
| TAACAACCTTTGCTTGTATG+AGG | - | chr8.3:19382604-19382623 | MS.gene71888:intron | 35.0% | |
| TAATTGCCAATCTTGTCTGT+AGG | - | chr8.3:19383919-19383938 | MS.gene71888:CDS | 35.0% | |
| TACACACACACTTACACATA+TGG | - | chr8.3:19383144-19383163 | MS.gene71888:intron | 35.0% | |
| TAGATGATTGGAATTAGGAC+GGG | - | chr8.3:19381972-19381991 | MS.gene71888:CDS | 35.0% | |
| TCACAAAAGGACAATGAAGT+GGG | + | chr8.3:19384527-19384546 | None:intergenic | 35.0% | |
| TCTCAAGGATCTGTAATAGT+GGG | - | chr8.3:19382383-19382402 | MS.gene71888:intron | 35.0% | |
| TGCATTTGGCTGTAAATTGA+TGG | + | chr8.3:19382712-19382731 | None:intergenic | 35.0% | |
| TGGAGAGATAAACGAACTTT+GGG | + | chr8.3:19381791-19381810 | None:intergenic | 35.0% | |
| TGGAGGATTATACGAATTAC+TGG | - | chr8.3:19382051-19382070 | MS.gene71888:CDS | 35.0% | |
| TGTGATTGTGATTACCTTGA+TGG | + | chr8.3:19381894-19381913 | None:intergenic | 35.0% | |
| TTACATCTATGGAACAGACA+AGG | - | chr8.3:19384220-19384239 | MS.gene71888:intron | 35.0% | |
| TTAGCAATGGTTGTATAAGG+TGG | + | chr8.3:19383473-19383492 | None:intergenic | 35.0% | |
| TTCACAAAAGGACAATGAAG+TGG | + | chr8.3:19384528-19384547 | None:intergenic | 35.0% | |
| TTTGTCCTCCAACATAATGA+TGG | + | chr8.3:19384163-19384182 | None:intergenic | 35.0% | |
| ! | AAAGTAATCGGATTTGGTAG+CGG | + | chr8.3:19381657-19381676 | None:intergenic | 35.0% |
| ! | AACCGTAATGAATGTCCTTT+TGG | - | chr8.3:19382347-19382366 | MS.gene71888:intron | 35.0% |
| ! | CTGGTCACATGATTACATTT+TGG | - | chr8.3:19382228-19382247 | MS.gene71888:intron | 35.0% |
| ! | GAAGGACAATTTAGGGATTT+TGG | - | chr8.3:19383416-19383435 | MS.gene71888:intron | 35.0% |
| ! | GATGCTTCAATTTTCTGACA+CGG | - | chr8.3:19382631-19382650 | MS.gene71888:intron | 35.0% |
| ! | TATATTTTGTGGGATTCCAG+GGG | + | chr8.3:19384106-19384125 | None:intergenic | 35.0% |
| ! | TGTTTATGTCACAGGGTTTT+CGG | - | chr8.3:19384332-19384351 | MS.gene71888:CDS | 35.0% |
| !! | TCAAATTCAAGTTGCAAGCA+CGG | + | chr8.3:19383897-19383916 | None:intergenic | 35.0% |
| AACCTGTTTATGATCTTGGG+GGG | - | chr8.3:19382811-19382830 | MS.gene71888:intron | 40.0% | |
| AGATGATTGGAATTAGGACG+GGG | - | chr8.3:19381973-19381992 | MS.gene71888:CDS | 40.0% | |
| AGCTGATACAGTTGCAATTG+CGG | - | chr8.3:19382556-19382575 | MS.gene71888:intron | 40.0% | |
| ATACAGTTGCAATTGCGGTT+GGG | - | chr8.3:19382561-19382580 | MS.gene71888:intron | 40.0% | |
| ATCTCAAATCCAGACGGTAA+CGG | + | chr8.3:19382002-19382021 | None:intergenic | 40.0% | |
| ATGCAGAAACTGGAGAAGAA+TGG | + | chr8.3:19384021-19384040 | None:intergenic | 40.0% | |
| CAATCCACCAGATATAAGCA+CGG | + | chr8.3:19383836-19383855 | None:intergenic | 40.0% | |
| CACAAAAGGACAATGAAGTG+GGG | + | chr8.3:19384526-19384545 | None:intergenic | 40.0% | |
| CACCAAGAGGTAAATCTTTC+CGG | - | chr8.3:19382998-19383017 | MS.gene71888:intron | 40.0% | |
| CGTTTCTTATCCTTCCATCA+AGG | - | chr8.3:19381877-19381896 | MS.gene71888:intron | 40.0% | |
| CTGAAGGAAGATTCGACAAA+TGG | - | chr8.3:19384557-19384576 | MS.gene71888:CDS | 40.0% | |
| GGATCTTGTACTCATCGAAA+GGG | + | chr8.3:19381766-19381785 | None:intergenic | 40.0% | |
| GGTTCACCCATTCAAACAAT+TGG | - | chr8.3:19382743-19382762 | MS.gene71888:intron | 40.0% | |
| GTAGTTGAACCATAGGGTTT+CGG | + | chr8.3:19381633-19381652 | None:intergenic | 40.0% | |
| GTGTATCAATGGCTTCAACT+TGG | + | chr8.3:19382271-19382290 | None:intergenic | 40.0% | |
| TCAAGAAAAACGAGTGGAAG+AGG | + | chr8.3:19381728-19381747 | None:intergenic | 40.0% | |
| TCAAGCTCCAATTGGATTTG+CGG | - | chr8.3:19382136-19382155 | MS.gene71888:intron | 40.0% | |
| TCACAACCTCATACAAGCAA+AGG | + | chr8.3:19382613-19382632 | None:intergenic | 40.0% | |
| TGCAACTATAGATCTCACTC+AGG | + | chr8.3:19382430-19382449 | None:intergenic | 40.0% | |
| TGGATCTTGTACTCATCGAA+AGG | + | chr8.3:19381767-19381786 | None:intergenic | 40.0% | |
| TTATATCTGGTGGAATGTCC+AGG | - | chr8.3:19383871-19383890 | MS.gene71888:intron | 40.0% | |
| TTGTTCTTGACTACACCAAG+AGG | - | chr8.3:19382985-19383004 | MS.gene71888:intron | 40.0% | |
| ! | AGGGATTTTGGATGACAGTT+GGG | - | chr8.3:19383428-19383447 | MS.gene71888:intron | 40.0% |
| ! | GATCCAAAGCACTTTCCAAA+AGG | + | chr8.3:19382365-19382384 | None:intergenic | 40.0% |
| ! | GGATAAGAAACGAGTTGAAG+AGG | + | chr8.3:19381869-19381888 | None:intergenic | 40.0% |
| ! | TAGGGATTTTGGATGACAGT+TGG | - | chr8.3:19383427-19383446 | MS.gene71888:intron | 40.0% |
| !! | GTTAGTGATTAGTCTTGCTG+AGG | - | chr8.3:19383810-19383829 | MS.gene71888:intron | 40.0% |
| !! | TGGAAGGTGTTTGAGCAAAA+TGG | + | chr8.3:19384454-19384473 | None:intergenic | 40.0% |
| !!! | TGTCCTTTTGGAAAGTGCTT+TGG | - | chr8.3:19382359-19382378 | MS.gene71888:intron | 40.0% |
| AAGCCACAACAGGCAAATCA+CGG | + | chr8.3:19384411-19384430 | None:intergenic | 45.0% | |
| AAGCCATTGATACACACAGC+GGG | - | chr8.3:19382276-19382295 | MS.gene71888:intron | 45.0% | |
| ACCCTTGAGACAGAAAATGC+CGG | + | chr8.3:19383020-19383039 | None:intergenic | 45.0% | |
| ACCTGTTTATGATCTTGGGG+GGG | - | chr8.3:19382812-19382831 | MS.gene71888:intron | 45.0% | |
| AGCGGAGTAGTTGAACCATA+GGG | + | chr8.3:19381639-19381658 | None:intergenic | 45.0% | |
| ATAGCCGGTCCAAGAAAAGA+CGG | + | chr8.3:19382203-19382222 | None:intergenic | 45.0% | |
| GAAGCCATTGATACACACAG+CGG | - | chr8.3:19382275-19382294 | MS.gene71888:intron | 45.0% | |
| GAGATAAACGAACTTTGGGC+TGG | + | chr8.3:19381787-19381806 | None:intergenic | 45.0% | |
| GATACAGTTGCAATTGCGGT+TGG | - | chr8.3:19382560-19382579 | MS.gene71888:intron | 45.0% | |
| GTTGAAGAGGACCAACAACA+AGG | + | chr8.3:19381856-19381875 | None:intergenic | 45.0% | |
| TAGCGGAGTAGTTGAACCAT+AGG | + | chr8.3:19381640-19381659 | None:intergenic | 45.0% | |
| TGCCGGAAAGATTTACCTCT+TGG | + | chr8.3:19383003-19383022 | None:intergenic | 45.0% | |
| TTGGATGACAGTTGGGAGTT+GGG | - | chr8.3:19383435-19383454 | MS.gene71888:intron | 45.0% | |
| TTTGGATGACAGTTGGGAGT+TGG | - | chr8.3:19383434-19383453 | MS.gene71888:intron | 45.0% | |
| ! | GATTCCGTCTTTTCTTGGAC+CGG | - | chr8.3:19382196-19382215 | MS.gene71888:intron | 45.0% |
| ! | TCCGGCATTTTCTGTCTCAA+GGG | - | chr8.3:19383016-19383035 | MS.gene71888:intron | 45.0% |
| ! | TGGGCGGAGATCTTGATTTT+GGG | - | chr8.3:19382173-19382192 | MS.gene71888:intron | 45.0% |
| ! | TTCCGGCATTTTCTGTCTCA+AGG | - | chr8.3:19383015-19383034 | MS.gene71888:intron | 45.0% |
| ! | TTGGGCGGAGATCTTGATTT+TGG | - | chr8.3:19382172-19382191 | MS.gene71888:intron | 45.0% |
| ! | TTGGGGATTCCGTCTTTTCT+TGG | - | chr8.3:19382191-19382210 | MS.gene71888:intron | 45.0% |
| !! | GGAAAGTGCTTTGGATCTCA+AGG | - | chr8.3:19382368-19382387 | MS.gene71888:intron | 45.0% |
| AAACGAGTGGAAGAGGAACG+AGG | + | chr8.3:19381721-19381740 | None:intergenic | 50.0% | |
| AACGAGTGGAAGAGGAACGA+GGG | + | chr8.3:19381720-19381739 | None:intergenic | 50.0% | |
| ACCCCCCCAAGATCATAAAC+AGG | + | chr8.3:19382816-19382835 | None:intergenic | 50.0% | |
| ATCTCCGCCCAATGTGCATA+AGG | + | chr8.3:19382164-19382183 | None:intergenic | 50.0% | |
| ATGTCAGGTATGACTTCCCC+TGG | - | chr8.3:19384087-19384106 | MS.gene71888:CDS | 50.0% | |
| ATGTGACCAGGAACCATAGC+CGG | + | chr8.3:19382218-19382237 | None:intergenic | 50.0% | |
| ATTCGACAAATGGTGCAGCG+CGG | - | chr8.3:19384567-19384586 | MS.gene71888:CDS | 50.0% | |
| ATTGCGACCGAGAGAGATCT+CGG | + | chr8.3:19381600-19381619 | None:intergenic | 50.0% | |
| CGTCGTGGAGAGATTGGTAA+GGG | + | chr8.3:19381577-19381596 | None:intergenic | 50.0% | |
| GTACCCGCTGTGTGTATCAA+TGG | + | chr8.3:19382282-19382301 | None:intergenic | 50.0% | |
| GTTTATGATCTTGGGGGGGT+GGG | - | chr8.3:19382816-19382835 | MS.gene71888:intron | 50.0% | |
| TGCTCAGCGCCACCATAAAA+TGG | + | chr8.3:19384131-19384150 | None:intergenic | 50.0% | |
| TGTTTATGATCTTGGGGGGG+TGG | - | chr8.3:19382815-19382834 | MS.gene71888:intron | 50.0% | |
| TTTATGATCTTGGGGGGGTG+GGG | - | chr8.3:19382817-19382836 | MS.gene71888:intron | 50.0% | |
| ! | GAACCGTGATTTGCCTGTTG+TGG | - | chr8.3:19384405-19384424 | MS.gene71888:CDS | 50.0% |
| ! | GGGCGGAGATCTTGATTTTG+GGG | - | chr8.3:19382174-19382193 | MS.gene71888:intron | 50.0% |
| ! | GTCTTTTCTTGGACCGGCTA+TGG | - | chr8.3:19382202-19382221 | MS.gene71888:intron | 50.0% |
| !! | TAAGGCGCCGCAAATCCAAT+TGG | + | chr8.3:19382146-19382165 | None:intergenic | 50.0% |
| ACAAATGGTGCAGCGCGGAA+TGG | - | chr8.3:19384572-19384591 | MS.gene71888:CDS | 55.0% | |
| CGAGGGAGAAGATGAGGAAG+AGG | + | chr8.3:19381703-19381722 | None:intergenic | 55.0% | |
| GAACCATAGGGTTTCGGCGA+AGG | + | chr8.3:19381627-19381646 | None:intergenic | 55.0% | |
| GAGGAACGAGGGAGAAGATG+AGG | + | chr8.3:19381709-19381728 | None:intergenic | 55.0% | |
| GAGGCCGTGCTTATATCTGG+TGG | - | chr8.3:19383829-19383848 | MS.gene71888:intron | 55.0% | |
| GCGTCGTGGAGAGATTGGTA+AGG | + | chr8.3:19381578-19381597 | None:intergenic | 55.0% | |
| GCTGAGGCCGTGCTTATATC+TGG | - | chr8.3:19383826-19383845 | MS.gene71888:intron | 55.0% | |
| TCACCTTCGCCGAAACCCTA+TGG | - | chr8.3:19381621-19381640 | MS.gene71888:CDS | 55.0% | |
| TGCGGCGCCTTATGCACATT+GGG | - | chr8.3:19382154-19382173 | MS.gene71888:intron | 55.0% | |
| TTATGATCTTGGGGGGGTGG+GGG | - | chr8.3:19382818-19382837 | MS.gene71888:intron | 55.0% | |
| TTGCGGCGCCTTATGCACAT+TGG | - | chr8.3:19382153-19382172 | MS.gene71888:intron | 55.0% | |
| !! | TTCAAGTTGCAAGCACGGCC+TGG | + | chr8.3:19383892-19383911 | None:intergenic | 55.0% |
| ACGGGGTTACCGTTACCGTC+TGG | - | chr8.3:19381990-19382009 | MS.gene71888:CDS | 60.0% | |
| CACGACGCCGAGATCTCTCT+CGG | - | chr8.3:19381590-19381609 | MS.gene71888:CDS | 60.0% | |
| CTTGGACCGGCTATGGTTCC+TGG | - | chr8.3:19382209-19382228 | MS.gene71888:intron | 60.0% | |
| GGCGCCTTATGCACATTGGG+CGG | - | chr8.3:19382157-19382176 | MS.gene71888:intron | 60.0% | |
| TATGATCTTGGGGGGGTGGG+GGG | - | chr8.3:19382819-19382838 | MS.gene71888:intron | 60.0% | |
| TCTCGGCGTCGTGGAGAGAT+TGG | + | chr8.3:19381583-19381602 | None:intergenic | 60.0% | |
| CGAGAGAGATCTCGGCGTCG+TGG | + | chr8.3:19381592-19381611 | None:intergenic | 65.0% | |
| ! | GGGGGGGTGGGGGGCTCTGT+TGG | - | chr8.3:19382828-19382847 | MS.gene71888:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19381569 | 19384634 | 19381569 | ID=MS.gene71888 |
| chr8.3 | mRNA | 19381569 | 19384634 | 19381569 | ID=MS.gene71888.t1;Parent=MS.gene71888 |
| chr8.3 | exon | 19384305 | 19384634 | 19384305 | ID=MS.gene71888.t1.exon1;Parent=MS.gene71888.t1 |
| chr8.3 | CDS | 19384305 | 19384634 | 19384305 | ID=cds.MS.gene71888.t1;Parent=MS.gene71888.t1 |
| chr8.3 | exon | 19383906 | 19384228 | 19383906 | ID=MS.gene71888.t1.exon2;Parent=MS.gene71888.t1 |
| chr8.3 | CDS | 19383906 | 19384228 | 19383906 | ID=cds.MS.gene71888.t1;Parent=MS.gene71888.t1 |
| chr8.3 | exon | 19381962 | 19382109 | 19381962 | ID=MS.gene71888.t1.exon3;Parent=MS.gene71888.t1 |
| chr8.3 | CDS | 19381962 | 19382109 | 19381962 | ID=cds.MS.gene71888.t1;Parent=MS.gene71888.t1 |
| chr8.3 | exon | 19381825 | 19381857 | 19381825 | ID=MS.gene71888.t1.exon4;Parent=MS.gene71888.t1 |
| chr8.3 | CDS | 19381825 | 19381857 | 19381825 | ID=cds.MS.gene71888.t1;Parent=MS.gene71888.t1 |
| chr8.3 | exon | 19381569 | 19381646 | 19381569 | ID=MS.gene71888.t1.exon5;Parent=MS.gene71888.t1 |
| chr8.3 | CDS | 19381569 | 19381646 | 19381569 | ID=cds.MS.gene71888.t1;Parent=MS.gene71888.t1 |
| Gene Sequence |
| Protein sequence |
