AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72057


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72057.t1 MTR_3g056730 76.571 525 84 6 1 522 1 489 0.0 703
MS.gene72057.t1 MTR_3g056730 39.098 399 163 12 42 396 161 523 7.06e-47 173
MS.gene72057.t1 MTR_3g057330 55.814 172 47 5 1 156 1 159 4.63e-32 122
MS.gene72057.t1 MTR_3g057160 52.258 155 50 3 12 155 16 157 6.34e-26 105
MS.gene72057.t1 MTR_3g057030 52.586 116 35 2 12 116 24 130 1.76e-21 91.3
MS.gene72057.t1 MTR_3g056755 53.774 106 38 1 22 116 1 106 6.42e-18 81.6
MS.gene72057.t1 MTR_8g016620 55.340 103 35 1 25 116 1 103 9.43e-18 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 188 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGGAGTAATGGGGAATT+AGG 0.182122 3.1:-43233350 MS.gene72057:CDS
CCTTGACCATCTTTCTTCTT+TGG 0.207341 3.1:+43231111 None:intergenic
AAGAGGTAAAACCATCTAAT+TGG 0.236209 3.1:+43230459 None:intergenic
GCACCGGTCCAATACCATTT+TGG 0.247957 3.1:+43230427 None:intergenic
GGTAATGGGCTTGGATTAAA+TGG 0.276370 3.1:-43232384 MS.gene72057:CDS
AGGTGAAAACGTTGAGGTTT+TGG 0.277673 3.1:-43232580 MS.gene72057:CDS
GTGAGGAGTTGGTAAAGTTT+AGG 0.285312 3.1:-43231317 MS.gene72057:CDS
TGAGGAGTTGGTAAAGTTTA+GGG 0.291130 3.1:-43231316 MS.gene72057:CDS
GCTGCAGTTGGGCACGAAAA+AGG 0.292482 3.1:-43232345 MS.gene72057:CDS
GGCTTGTGCTGTTGCGGAAC+TGG 0.296718 3.1:-43232280 MS.gene72057:CDS
AAAGATGCTCTAGGTTCTTC+TGG 0.304704 3.1:-43232246 MS.gene72057:intron
CTCAATGTACCGCTCCAATT+TGG 0.304740 3.1:+43230337 None:intergenic
AGAATAGAGGGGTTGGTAAT+GGG 0.305592 3.1:-43232305 MS.gene72057:CDS
GATGGGGAGGCTTGTGCTAT+TGG 0.313811 3.1:-43231192 MS.gene72057:CDS
AAAGATGGTGTAGGTGCTTC+AGG 0.318345 3.1:-43233188 MS.gene72057:intron
TGAAGGAAGAAAGGAGTAAT+GGG 0.320371 3.1:-43233358 MS.gene72057:CDS
GCTAGGGAAGAAAAGTTAAA+AGG 0.323691 3.1:-43233479 MS.gene72057:CDS
AAAGATGGTCAAGGTTCTTC+AGG 0.328828 3.1:-43231102 MS.gene72057:intron
CTCTTCAAACCTAACCAAAA+TGG 0.334109 3.1:-43230441 MS.gene72057:CDS
GTTTCGTGTGGTGGTGGTGG+TGG 0.338025 3.1:-43233275 MS.gene72057:CDS
GAATGATCAATTCAAGGGTT+GGG 0.342077 3.1:-43232487 MS.gene72057:CDS
TGGCCAAGACTCTAGTGGTT+AGG 0.342174 3.1:-43232560 MS.gene72057:CDS
AGGAAATTGAAGAGAAGATT+AGG 0.342554 3.1:-43231425 MS.gene72057:CDS
AGCACGATGTTGAACCAAAT+TGG 0.349649 3.1:-43230351 MS.gene72057:CDS
TAGACGAGACGCTAGTGGTT+AGG 0.352615 3.1:-43232830 MS.gene72057:CDS
GAATGTCTTGAAAGCTGAAT+TGG 0.366498 3.1:-43231262 MS.gene72057:CDS
AGAAGAGGAAGGTTGGTAAT+GGG 0.369141 3.1:-43233298 MS.gene72057:CDS
TATTCTGTTGTTGAACTAGA+AGG 0.373210 3.1:-43232600 MS.gene72057:CDS
AAAGGAGTAATGGGGAATTA+GGG 0.373435 3.1:-43233349 MS.gene72057:CDS
GGCCAAGACTCTAGTGGTTA+GGG 0.393087 3.1:-43232559 MS.gene72057:CDS
CACCTGCAGCTCCAATTAGA+TGG 0.394345 3.1:-43230470 MS.gene72057:intron
GTGGAGAATGGTAATGGGCT+TGG 0.402569 3.1:-43232393 MS.gene72057:CDS
TGGAAGGTGTAGTGGTGAAG+TGG 0.405749 3.1:-43233324 MS.gene72057:CDS
CTTTGCTTCCCTGTCCCCTA+AGG 0.406376 3.1:+43231455 None:intergenic
AGAATAGAGGGGTTGGTGAT+GGG 0.410347 3.1:-43232629 MS.gene72057:CDS
TTTGAGGTGTTGAAGAATAG+AGG 0.410883 3.1:-43232642 MS.gene72057:CDS
GAAAGGAGATTACGAAGCTT+GGG 0.410918 3.1:-43232683 MS.gene72057:CDS
AAACCTAACCAAAATGGTAT+TGG 0.415009 3.1:-43230435 MS.gene72057:CDS
AAGAATAGAGGGGTTGGTAA+TGG 0.418976 3.1:-43232306 MS.gene72057:CDS
GACCGGACGATTGGCGGAAC+CGG 0.421193 3.1:-43233598 MS.gene72057:CDS
TTGGTAAAGTTTAGGGAGAA+TGG 0.424096 3.1:-43231309 MS.gene72057:CDS
CTCCGGTTCCGCCAATCGTC+CGG 0.428014 3.1:+43233596 None:intergenic
AGTAATGGGGAATTAGGGTT+TGG 0.430269 3.1:-43233344 MS.gene72057:CDS
GGAAAAGGTTAGTGTTGAAA+TGG 0.431642 3.1:-43233393 MS.gene72057:CDS
GAAATTTGATATGTTGATGT+TGG 0.433409 3.1:-43233414 MS.gene72057:CDS
AGAATAATCAACTCAAGAGT+TGG 0.434885 3.1:-43232758 MS.gene72057:CDS
AAGAATAGAGGGGTTGGTGA+TGG 0.435736 3.1:-43232630 MS.gene72057:CDS
TTTGAGGGGTTGAAGAATAG+AGG 0.435861 3.1:-43232318 MS.gene72057:CDS
AATGTCTTGAAAGCTGAATT+GGG 0.440423 3.1:-43231261 MS.gene72057:CDS
AGCAAACCTTGCAACAAGAT+TGG 0.440924 3.1:-43231526 MS.gene72057:CDS
GGGGTTTCGTGTGGTGGTGG+TGG 0.441901 3.1:-43233278 MS.gene72057:CDS
GGTAATGGGGTTTCGTGTGG+TGG 0.444977 3.1:-43233284 MS.gene72057:CDS
AAGAATAGTGGGGATGTTGA+TGG 0.446678 3.1:-43231210 MS.gene72057:CDS
CTTGAGGTGGTGAAGAATAG+TGG 0.446970 3.1:-43231222 MS.gene72057:CDS
GTGAATATCCCTTAGGGGAC+AGG 0.454513 3.1:-43231464 MS.gene72057:CDS
AATGGGGTTTCGTGTGGTGG+TGG 0.456149 3.1:-43233281 MS.gene72057:CDS
AGCTCCGAGATACGTTTATA+AGG 0.459337 3.1:-43233535 MS.gene72057:CDS
TGAAGAGAGTGAAGGAAGAA+AGG 0.461439 3.1:-43233367 MS.gene72057:CDS
GTGAAGGAAGAAAGGAGTAA+TGG 0.462189 3.1:-43233359 MS.gene72057:CDS
GGAAAGGAGATTACGAAGCT+TGG 0.464408 3.1:-43232684 MS.gene72057:CDS
AGGTGAAAATGTCAAGGATT+CGG 0.464930 3.1:-43231160 MS.gene72057:CDS
CTCATGAAGGTTGTGGAGAA+TGG 0.465265 3.1:-43232405 MS.gene72057:CDS
ACAAGAGAATGATCAATTCA+AGG 0.466933 3.1:-43232493 MS.gene72057:CDS
TTGAAGAAACCCTAATTGCT+AGG 0.467341 3.1:-43233496 MS.gene72057:CDS
AAGAAGAGGAAGGTTGGTAA+TGG 0.467999 3.1:-43233299 MS.gene72057:CDS
AAGTTTAGGGAGAATGGTAA+TGG 0.471532 3.1:-43231303 MS.gene72057:CDS
GAAGAATCAATTTAAGAGCT+TGG 0.473315 3.1:-43231391 MS.gene72057:CDS
GTGAAGGAAAAGAGAGGGGT+TGG 0.479471 3.1:-43233224 MS.gene72057:CDS
GAATAGAGGGGTTGGTAATG+GGG 0.480773 3.1:-43232304 MS.gene72057:CDS
TGATATGTTGATGTTGGAAA+AGG 0.480946 3.1:-43233408 MS.gene72057:CDS
AGTTTAGGGAGAATGGTAAT+GGG 0.481093 3.1:-43231302 MS.gene72057:CDS
AGACGAGACGCTAGTGGTTA+GGG 0.483500 3.1:-43232829 MS.gene72057:CDS
TTGAGGTGGTGAAGAATAGT+GGG 0.483995 3.1:-43231221 MS.gene72057:CDS
AGAATAGTGGGGATGTTGAT+GGG 0.484279 3.1:-43231209 MS.gene72057:CDS
TCAACAGTGAATATCCCTTA+GGG 0.484341 3.1:-43231470 MS.gene72057:CDS
GAATAATCAACTCAAGAGTT+GGG 0.484753 3.1:-43232757 MS.gene72057:CDS
GAAGAGGAAGGTTGGTAATG+GGG 0.485969 3.1:-43233297 MS.gene72057:CDS
GAATAGAGGGGTTGGTGATG+GGG 0.490835 3.1:-43232628 MS.gene72057:CDS
GGAAGGTGTAGTGGTGAAGT+GGG 0.491846 3.1:-43233323 MS.gene72057:CDS
GTGGGGAAGAAGAGGAAGGT+TGG 0.493367 3.1:-43233305 MS.gene72057:CDS
CTCCCTAACCACTAGAGTCT+TGG 0.493940 3.1:+43232557 None:intergenic
GTGGTGAAGTGGGGAAGAAG+AGG 0.495354 3.1:-43233313 MS.gene72057:CDS
TTGAGGGGTTGAAGAATAGA+GGG 0.495709 3.1:-43232317 MS.gene72057:CDS
TTGAGGTGTTGAAGAATAGA+GGG 0.497604 3.1:-43232641 MS.gene72057:CDS
TGAAGACAGTCACGGGAGAA+AGG 0.502692 3.1:-43232440 MS.gene72057:CDS
ATCAACAGTGAATATCCCTT+AGG 0.505771 3.1:-43231471 MS.gene72057:CDS
AGAATGATCAATTCAAGGGT+TGG 0.506620 3.1:-43232488 MS.gene72057:CDS
CAAGAGAATGATCAATTCAA+GGG 0.510678 3.1:-43232492 MS.gene72057:CDS
AAGCGACTGAAGAGAAGGTA+GGG 0.514282 3.1:-43232791 MS.gene72057:CDS
GGTTAGGGAGGCAATGTTGA+AGG 0.514625 3.1:-43232544 MS.gene72057:CDS
GTTGGTAATGGGGTTTCGTG+TGG 0.519370 3.1:-43233287 MS.gene72057:CDS
CTGACCTTATAAACGTATCT+CGG 0.522430 3.1:+43233531 None:intergenic
GTTGAGGCACAGAAAGTCAA+TGG 0.526558 3.1:-43231351 MS.gene72057:CDS
GGAACCGGAGCAATCTGAAC+CGG 0.528517 3.1:-43233583 MS.gene72057:CDS
CAAATTGGAGCGGTACATTG+AGG 0.529126 3.1:-43230336 None:intergenic
TTCGGCTGAAAGGAAAAGAT+TGG 0.530262 3.1:-43231142 MS.gene72057:CDS
AAAATTGACAGTGGTGTTTG+TGG 0.531387 3.1:-43230375 MS.gene72057:CDS
TTAGGGTTTGGAAGGTGTAG+TGG 0.533992 3.1:-43233332 MS.gene72057:CDS
AGCGGAGCTCATGAAGGTTG+TGG 0.535387 3.1:-43232412 MS.gene72057:CDS
AAGGTTGTGGAGAATGGTAA+TGG 0.536654 3.1:-43232399 MS.gene72057:CDS
CAAGCGACTGAAGAGAAGGT+AGG 0.536948 3.1:-43232792 MS.gene72057:CDS
TTTGCTTCCCTGTCCCCTAA+GGG 0.537294 3.1:+43231456 None:intergenic
GCTAACCACTCTTGAAGTCC+AGG 0.539468 3.1:-43230406 MS.gene72057:CDS
GTTTAGCCAATCTTGTTGCA+AGG 0.541391 3.1:+43231520 None:intergenic
CAATTAGGGTTTCTTCAACA+AGG 0.543284 3.1:+43233501 None:intergenic
AATGATCAATTCAAGGGTTG+GGG 0.544266 3.1:-43232486 MS.gene72057:CDS
TGAAGAAACCCTAATTGCTA+GGG 0.547195 3.1:-43233495 MS.gene72057:CDS
ATTGAGGTGAACACGGTCAC+AGG 0.549420 3.1:-43232717 MS.gene72057:CDS
TGGGGAGGCTTGTGCTGTTG+CGG 0.549478 3.1:-43232286 MS.gene72057:CDS
AAACCCACTGATATAATGTC+AGG 0.550200 3.1:-43231501 MS.gene72057:CDS
ATGGGGAATTAGGGTTTGGA+AGG 0.550708 3.1:-43233340 MS.gene72057:CDS
TAGAGGGGTTGGTGATGGGG+AGG 0.550711 3.1:-43232625 MS.gene72057:CDS
GAAGGCAGCGGCTGAAGAGA+AGG 0.552001 3.1:-43232526 MS.gene72057:CDS
AGGTTGTGGAGAATGGTAAT+GGG 0.553988 3.1:-43232398 MS.gene72057:CDS
AGAAGATTAGGTTACTGCAC+AGG 0.554303 3.1:-43231413 MS.gene72057:CDS
AGAAAGGTGTGGTGAGGAGT+TGG 0.555115 3.1:-43231328 MS.gene72057:CDS
CCACTAGCGTCTCGTCTACA+CGG 0.558048 3.1:+43232835 None:intergenic
TTTGGTGAAGGAAAAGAGAG+GGG 0.558869 3.1:-43233228 MS.gene72057:CDS
CACAGAAAGTCAATGGAGAA+AGG 0.559886 3.1:-43231344 MS.gene72057:CDS
GGAGGCAATGTTGAAGGCAG+CGG 0.560044 3.1:-43232538 MS.gene72057:CDS
GCTTGGATTAAATGGTGGAA+AGG 0.560127 3.1:-43232376 MS.gene72057:CDS
TCAAGACATTCCCATCGTCT+AGG 0.560666 3.1:+43231274 None:intergenic
TGAGGTGTTGAAGAATAGAG+GGG 0.561820 3.1:-43232640 MS.gene72057:CDS
ATGTCAAGGATTCGGCTGAA+AGG 0.565218 3.1:-43231152 MS.gene72057:CDS
TTACCTGACATTATATCAGT+GGG 0.567901 3.1:+43231498 None:intergenic
AACGGTTCGAAATTGGGCCG+CGG 0.568883 3.1:+43233626 None:intergenic
GAATAGTGGGGATGTTGATG+GGG 0.569033 3.1:-43231208 MS.gene72057:CDS
GGTGAACCAAAGAAGAAAGA+TGG 0.570911 3.1:-43231117 MS.gene72057:CDS
TGAAGTGGGGAAGAAGAGGA+AGG 0.571245 3.1:-43233309 MS.gene72057:CDS
GCTGAAAGGAAAAGATTGGC+TGG 0.571500 3.1:-43231138 MS.gene72057:CDS
GAAGCAAGCGACTGAAGAGA+AGG 0.571880 3.1:-43232796 MS.gene72057:CDS
GCTGTTGCGGAACTGGATGT+TGG 0.573739 3.1:-43232273 MS.gene72057:CDS
CAGCGGCTGAAGAGAAGGTG+AGG 0.574750 3.1:-43232521 MS.gene72057:CDS
ATCAATTCAAGGGTTGGGGA+AGG 0.576290 3.1:-43232482 MS.gene72057:CDS
CAATGGAGAAAGGTGTGGTG+AGG 0.579211 3.1:-43231334 MS.gene72057:CDS
TAACCAAAATGGTATTGGAC+CGG 0.579693 3.1:-43230430 MS.gene72057:CDS
ATTACCTGACATTATATCAG+TGG 0.580124 3.1:+43231497 None:intergenic
CACAGGAGGAAGGCATGGAA+AGG 0.580422 3.1:-43232700 MS.gene72057:CDS
TCTGAACCGGATGACTATCT+CGG 0.580906 3.1:-43233570 MS.gene72057:CDS
ACGGTCACAGGAGGAAGGCA+TGG 0.583130 3.1:-43232705 MS.gene72057:CDS
TGAATATCCCTTAGGGGACA+GGG 0.584280 3.1:-43231463 MS.gene72057:CDS
GGGTTGAAGAATAGAGGGGT+TGG 0.584413 3.1:-43232312 MS.gene72057:CDS
GGTGAACAGAGCAAGAAAGA+TGG 0.584880 3.1:-43233203 MS.gene72057:CDS
TGTTCACCTCAATCTCAAAA+CGG 0.586515 3.1:+43232727 None:intergenic
CACGGGAGAAAGGCGTGAAG+CGG 0.587340 3.1:-43232430 MS.gene72057:CDS
TAGTGGGGATGTTGATGGGG+AGG 0.587822 3.1:-43231205 MS.gene72057:CDS
GTTGGAAAGAAAGATGCTCT+AGG 0.595591 3.1:-43232255 MS.gene72057:CDS
TCATCCGGTTCAGATTGCTC+CGG 0.598916 3.1:+43233579 None:intergenic
GGACAGGGAAGCAAAGCTGA+AGG 0.599361 3.1:-43231448 MS.gene72057:CDS
AGCGGCTGAAGAGAAGGTGA+GGG 0.600067 3.1:-43232520 MS.gene72057:CDS
AATGGAGCTGAAGAGAGTGA+AGG 0.601883 3.1:-43233375 MS.gene72057:CDS
TGAGGGGTTGAAGAATAGAG+GGG 0.604683 3.1:-43232316 MS.gene72057:CDS
TGCTGCCTGGACTTCAAGAG+TGG 0.606394 3.1:+43230401 None:intergenic
GCGTGAAGCGGAGCTCATGA+AGG 0.606657 3.1:-43232418 MS.gene72057:CDS
GAAGGAAGAAAGGAGTAATG+GGG 0.610158 3.1:-43233357 MS.gene72057:CDS
TGTGCTATTGGTGAACTCAA+AGG 0.612601 3.1:-43231180 MS.gene72057:CDS
ATCAACTCAAGAGTTGGGAA+AGG 0.613118 3.1:-43232752 MS.gene72057:CDS
ACTAGAAGGTGAAAACGTTG+AGG 0.614135 3.1:-43232586 MS.gene72057:CDS
TATAAACGTATCTCGGAGCT+CGG 0.614929 3.1:+43233538 None:intergenic
CCGTGTAGACGAGACGCTAG+TGG 0.616681 3.1:-43232835 MS.gene72057:CDS
AGCGACTGAAGAGAAGGTAG+GGG 0.616894 3.1:-43232790 MS.gene72057:CDS
GTTGAGGTGAAGACAGTCAC+GGG 0.618797 3.1:-43232447 MS.gene72057:CDS
ATGGGATTGACCTAGACGAT+GGG 0.623349 3.1:-43231284 MS.gene72057:CDS
TGAACACGGTCACAGGAGGA+AGG 0.623523 3.1:-43232710 MS.gene72057:CDS
CCAAAGAAGAAAGATGGTCA+AGG 0.626663 3.1:-43231111 MS.gene72057:CDS
ACTCAAAGGTGAAAATGTCA+AGG 0.630430 3.1:-43231166 MS.gene72057:CDS
CAGAGCAAGAAAGATGGTGT+AGG 0.632696 3.1:-43233197 MS.gene72057:CDS
CAGGGAAGCAAAGCTGAAGG+AGG 0.633850 3.1:-43231445 MS.gene72057:CDS
CGAGCTCCGAGATAGTCATC+CGG 0.633991 3.1:+43233564 None:intergenic
GAATGAAAGACACAAGCTTG+AGG 0.634993 3.1:-43231238 MS.gene72057:CDS
ACTTCAAGAGTGGTTAGCAC+CGG 0.635036 3.1:+43230411 None:intergenic
TAGAGGGGTTGGTAATGGGG+AGG 0.638423 3.1:-43232301 MS.gene72057:CDS
AATGGGCTTGGATTAAATGG+TGG 0.645914 3.1:-43232381 MS.gene72057:CDS
GAGGTGAACACGGTCACAGG+AGG 0.650216 3.1:-43232714 MS.gene72057:CDS
GAAGGTGTAGTGGTGAAGTG+GGG 0.652743 3.1:-43233322 MS.gene72057:CDS
GTGTTGAAGAATAGAGGGGT+TGG 0.652928 3.1:-43232636 MS.gene72057:CDS
CAAGACTCTAGTGGTTAGGG+AGG 0.659317 3.1:-43232556 MS.gene72057:CDS
ATGTCTTGAAAGCTGAATTG+GGG 0.663640 3.1:-43231260 MS.gene72057:CDS
GGTTGAGGTGAAGACAGTCA+CGG 0.672238 3.1:-43232448 MS.gene72057:CDS
AAAGGAGATTACGAAGCTTG+GGG 0.675080 3.1:-43232682 MS.gene72057:CDS
AATGGGATTGACCTAGACGA+TGG 0.675239 3.1:-43231285 MS.gene72057:CDS
TGAAAGACACAAGCTTGAGG+TGG 0.678335 3.1:-43231235 MS.gene72057:CDS
AAAGTCAATGGAGAAAGGTG+TGG 0.681382 3.1:-43231339 MS.gene72057:CDS
CAACAGTGAATATCCCTTAG+GGG 0.696163 3.1:-43231469 MS.gene72057:CDS
GCTTCACGCTCATGGAACCG+CGG 0.699483 3.1:-43233643 None:intergenic
GATGTTGAACCAAATTGGAG+CGG 0.723634 3.1:-43230346 MS.gene72057:CDS
TGAGGTGGTGAAGAATAGTG+GGG 0.725161 3.1:-43231220 MS.gene72057:CDS
GCAGCAACTAAAATTGACAG+TGG 0.729128 3.1:-43230384 MS.gene72057:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAGAAATTAATCTTA+AGG - chr3.1:43233077-43233096 MS.gene72057:intron 10.0%
!! ATATTAGAAATTAATCTTAA+GGG - chr3.1:43233078-43233097 MS.gene72057:intron 10.0%
!!! TTTAACTTATCTTTTTATAT+AGG + chr3.1:43232992-43233011 None:intergenic 10.0%
!! AATTAGTAGTTAAGTTATAT+TGG - chr3.1:43231058-43231077 MS.gene72057:intron 15.0%
!! ATTAGTAGTTAAGTTATATT+GGG - chr3.1:43231059-43231078 MS.gene72057:intron 15.0%
!! TAATGAAAAATACAAATTTG+AGG - chr3.1:43231312-43231331 MS.gene72057:CDS 15.0%
!!! GTTTATCAAAATATCTTTTT+GGG + chr3.1:43233274-43233293 None:intergenic 15.0%
!!! TTTTTTATGTTTAAACCAAT+TGG - chr3.1:43231088-43231107 MS.gene72057:intron 15.0%
!! AATATTGTGTTAAAGTATAG+TGG + chr3.1:43233109-43233128 None:intergenic 20.0%
!! GTAAAATTTAGTAGAAATCT+GGG - chr3.1:43232245-43232264 MS.gene72057:intron 20.0%
!! TATTATTGAGTATGTATGTT+TGG - chr3.1:43230938-43230957 MS.gene72057:intron 20.0%
!! TGATAATTCTTCATCAAATA+CGG + chr3.1:43231013-43231032 None:intergenic 20.0%
!! TGTAAAATTTAGTAGAAATC+TGG - chr3.1:43232244-43232263 MS.gene72057:intron 20.0%
!! TTGATGTAACTAGTAATATA+AGG - chr3.1:43232193-43232212 MS.gene72057:intron 20.0%
!!! AAGATATTTTGATAAACCAA+TGG - chr3.1:43233277-43233296 MS.gene72057:CDS 20.0%
!!! GGTTTATCAAAATATCTTTT+TGG + chr3.1:43233275-43233294 None:intergenic 20.0%
!!! TTATCTTTTTATATAGGACT+AGG + chr3.1:43232986-43233005 None:intergenic 20.0%
!!! TTATGATCAAGATAATTTGT+TGG - chr3.1:43231838-43231857 MS.gene72057:intron 20.0%
! AAAATTGGCAATATTGTACA+AGG - chr3.1:43232305-43232324 MS.gene72057:CDS 25.0%
! AAATTGGCAATATTGTACAA+GGG - chr3.1:43232306-43232325 MS.gene72057:CDS 25.0%
! AACTTCAAATCAAACCAAAA+TGG - chr3.1:43233379-43233398 MS.gene72057:CDS 25.0%
! ACATTAAAGAATGCATACAT+AGG + chr3.1:43231778-43231797 None:intergenic 25.0%
! AGTGAATTTGATGGAAAAAA+TGG - chr3.1:43231975-43231994 MS.gene72057:intron 25.0%
! CAATTAATTACTTCCAGAAT+AGG + chr3.1:43232357-43232376 None:intergenic 25.0%
! GAAATATGCAAACTAATCTT+AGG - chr3.1:43233035-43233054 MS.gene72057:intron 25.0%
! GAAATTTGATATGTTGATGT+TGG - chr3.1:43230556-43230575 MS.gene72057:intron 25.0%
! GATAATTCTTCATCAAATAC+GGG + chr3.1:43231012-43231031 None:intergenic 25.0%
!! TTCTGGAAGTAATTAATTGT+TGG - chr3.1:43232358-43232377 MS.gene72057:CDS 25.0%
!!! AAAACTGTTTTTGTTTGGTT+TGG + chr3.1:43233464-43233483 None:intergenic 25.0%
!!! TTTTGGGTTTTGATTAAGTT+GGG + chr3.1:43233258-43233277 None:intergenic 25.0%
!!! TTTTTGGGTTTTGATTAAGT+TGG + chr3.1:43233259-43233278 None:intergenic 25.0%
AAACCTAACCAAAATGGTAT+TGG - chr3.1:43233535-43233554 MS.gene72057:CDS 30.0%
AAGAGGTAAAACCATCTAAT+TGG + chr3.1:43233514-43233533 None:intergenic 30.0%
AATCAAACCAAAATGGCTTT+CGG - chr3.1:43233386-43233405 MS.gene72057:CDS 30.0%
AATGTCTTGAAAGCTGAATT+GGG - chr3.1:43232709-43232728 MS.gene72057:CDS 30.0%
ACAAGAGAATGATCAATTCA+AGG - chr3.1:43231477-43231496 MS.gene72057:CDS 30.0%
ACTAAACACTAACCTCTATT+TGG - chr3.1:43232946-43232965 MS.gene72057:intron 30.0%
AGAATAATCAACTCAAGAGT+TGG - chr3.1:43231212-43231231 MS.gene72057:CDS 30.0%
AGGAAATTGAAGAGAAGATT+AGG - chr3.1:43232545-43232564 MS.gene72057:CDS 30.0%
AGTCAAGAATAGTTGTAGAA+TGG - chr3.1:43231924-43231943 MS.gene72057:intron 30.0%
ATTACCTGACATTATATCAG+TGG + chr3.1:43232476-43232495 None:intergenic 30.0%
ATTGAGTATGTATGTTTGGT+TGG - chr3.1:43230942-43230961 MS.gene72057:intron 30.0%
CAAGAGAATGATCAATTCAA+GGG - chr3.1:43231478-43231497 MS.gene72057:CDS 30.0%
GAAGAATCAATTTAAGAGCT+TGG - chr3.1:43232579-43232598 MS.gene72057:CDS 30.0%
GAATAATCAACTCAAGAGTT+GGG - chr3.1:43231213-43231232 MS.gene72057:CDS 30.0%
GAGAATACTATGCAGTTTAT+TGG - chr3.1:43232135-43232154 MS.gene72057:intron 30.0%
TATGTCACAATTACGATTAG+TGG - chr3.1:43231901-43231920 MS.gene72057:intron 30.0%
TATTCTGTTGTTGAACTAGA+AGG - chr3.1:43231370-43231389 MS.gene72057:CDS 30.0%
TGATATGTTGATGTTGGAAA+AGG - chr3.1:43230562-43230581 MS.gene72057:intron 30.0%
TTACCTGACATTATATCAGT+GGG + chr3.1:43232475-43232494 None:intergenic 30.0%
TTCTCTAACCAAACTGAAAA+AGG + chr3.1:43232120-43232139 None:intergenic 30.0%
TTTCATGAACGTGGAAAAAT+TGG - chr3.1:43232290-43232309 MS.gene72057:CDS 30.0%
!! ACTACATGATTTTGATGTTG+AGG - chr3.1:43232603-43232622 MS.gene72057:CDS 30.0%
!! GGTGTTATACTTTTCAACTA+AGG + chr3.1:43233237-43233256 None:intergenic 30.0%
!!! AATGGATGTTGTTTTAACCA+TGG - chr3.1:43231942-43231961 MS.gene72057:intron 30.0%
!!! GACAGAAAACTGTTTTTGTT+TGG + chr3.1:43233469-43233488 None:intergenic 30.0%
!!! GCAATTTTTGTTGTTTCTTC+AGG + chr3.1:43231803-43231822 None:intergenic 30.0%
AAAATTGACAGTGGTGTTTG+TGG - chr3.1:43233595-43233614 MS.gene72057:CDS 35.0%
AAACCAATTGGAATTACTCC+AGG - chr3.1:43231100-43231119 MS.gene72057:intron 35.0%
AAACCCACTGATATAATGTC+AGG - chr3.1:43232469-43232488 MS.gene72057:CDS 35.0%
AACCAAACTGAAAAAGGAAC+AGG + chr3.1:43232114-43232133 None:intergenic 35.0%
AACTTTGTTGCACAAAACTC+AGG - chr3.1:43232015-43232034 MS.gene72057:intron 35.0%
AAGTTTAGGGAGAATGGTAA+TGG - chr3.1:43232667-43232686 MS.gene72057:CDS 35.0%
AATGATCAATTCAAGGGTTG+GGG - chr3.1:43231484-43231503 MS.gene72057:CDS 35.0%
ACGAAAAAGGCAAATTTGAG+GGG - chr3.1:43231638-43231657 MS.gene72057:intron 35.0%
ACTCAAAGGTGAAAATGTCA+AGG - chr3.1:43232804-43232823 MS.gene72057:CDS 35.0%
AGAATGATCAATTCAAGGGT+TGG - chr3.1:43231482-43231501 MS.gene72057:CDS 35.0%
AGGTGAAAATGTCAAGGATT+CGG - chr3.1:43232810-43232829 MS.gene72057:CDS 35.0%
AGTTTAGGGAGAATGGTAAT+GGG - chr3.1:43232668-43232687 MS.gene72057:CDS 35.0%
ATACTATGCAGTTTATTGGC+AGG - chr3.1:43232139-43232158 MS.gene72057:intron 35.0%
ATCAAACCAAAATGGCTTTC+GGG - chr3.1:43233387-43233406 MS.gene72057:CDS 35.0%
ATCAACAGTGAATATCCCTT+AGG - chr3.1:43232499-43232518 MS.gene72057:CDS 35.0%
ATGTCTTGAAAGCTGAATTG+GGG - chr3.1:43232710-43232729 MS.gene72057:CDS 35.0%
ATGTGCTTGTATTTGCCTTA+TGG - chr3.1:43232039-43232058 MS.gene72057:intron 35.0%
ATTTCAAAAGACATGAGTCG+AGG + chr3.1:43232169-43232188 None:intergenic 35.0%
CAATTAGGGTTTCTTCAACA+AGG + chr3.1:43230472-43230491 None:intergenic 35.0%
CACGAAAAAGGCAAATTTGA+GGG - chr3.1:43231637-43231656 MS.gene72057:intron 35.0%
CCACGTTCATGAAAATTAAG+TGG + chr3.1:43232284-43232303 None:intergenic 35.0%
CTCTTCAAACCTAACCAAAA+TGG - chr3.1:43233529-43233548 MS.gene72057:CDS 35.0%
CTGACCTTATAAACGTATCT+CGG + chr3.1:43230442-43230461 None:intergenic 35.0%
GAATGATCAATTCAAGGGTT+GGG - chr3.1:43231483-43231502 MS.gene72057:CDS 35.0%
GAATGTCTTGAAAGCTGAAT+TGG - chr3.1:43232708-43232727 MS.gene72057:CDS 35.0%
GCTAGGGAAGAAAAGTTAAA+AGG - chr3.1:43230491-43230510 MS.gene72057:intron 35.0%
GCTTAAAGCTAACAAAGCTT+TGG + chr3.1:43233197-43233216 None:intergenic 35.0%
TACTATGCAGTTTATTGGCA+GGG - chr3.1:43232140-43232159 MS.gene72057:intron 35.0%
TCAACAGTGAATATCCCTTA+GGG - chr3.1:43232500-43232519 MS.gene72057:CDS 35.0%
TCTAATATCTCGCCAAATAG+AGG + chr3.1:43232961-43232980 None:intergenic 35.0%
TGAAGAAACCCTAATTGCTA+GGG - chr3.1:43230475-43230494 MS.gene72057:intron 35.0%
TGAAGGAAGAAAGGAGTAAT+GGG - chr3.1:43230612-43230631 MS.gene72057:intron 35.0%
TGTTCACCTCAATCTCAAAA+CGG + chr3.1:43231246-43231265 None:intergenic 35.0%
TTGAAGAAACCCTAATTGCT+AGG - chr3.1:43230474-43230493 MS.gene72057:intron 35.0%
TTGGTAAAGTTTAGGGAGAA+TGG - chr3.1:43232661-43232680 MS.gene72057:CDS 35.0%
! AAAGAGTCTTGTCCTTTACT+TGG - chr3.1:43232064-43232083 MS.gene72057:intron 35.0%
! AAAGGAGTAATGGGGAATTA+GGG - chr3.1:43230621-43230640 MS.gene72057:intron 35.0%
! ACTTTTCTTCCCTAGCAATT+AGG + chr3.1:43230487-43230506 None:intergenic 35.0%
! AGTAGAAATCTGGGTTTTTG+TGG - chr3.1:43232254-43232273 MS.gene72057:CDS 35.0%
! CCACTTAATTTTCATGAACG+TGG - chr3.1:43232281-43232300 MS.gene72057:CDS 35.0%
! CTTTTCTTCCCTAGCAATTA+GGG + chr3.1:43230486-43230505 None:intergenic 35.0%
! GGAAAAGGTTAGTGTTGAAA+TGG - chr3.1:43230577-43230596 MS.gene72057:intron 35.0%
! TAACCAAAATGGTATTGGAC+CGG - chr3.1:43233540-43233559 MS.gene72057:CDS 35.0%
! TAAGGCTCAGCATTATGTTT+TGG - chr3.1:43232211-43232230 MS.gene72057:intron 35.0%
! TTTTGGTGAAGGAAAAGAGA+GGG - chr3.1:43230741-43230760 MS.gene72057:intron 35.0%
!! TGAGGAGTTGGTAAAGTTTA+GGG - chr3.1:43232654-43232673 MS.gene72057:CDS 35.0%
!! TTGAGGTGTTGAAGAATAGA+GGG - chr3.1:43231329-43231348 MS.gene72057:CDS 35.0%
!! TTTGAGGTGTTGAAGAATAG+AGG - chr3.1:43231328-43231347 MS.gene72057:CDS 35.0%
!! TTTTGAAGGTGGAAGAGTTT+TGG - chr3.1:43230724-43230743 MS.gene72057:intron 35.0%
!!! CATTTTGGTTAGGTTTGAAG+AGG + chr3.1:43233531-43233550 None:intergenic 35.0%
!!! TACCTGTTCCTTTTTCAGTT+TGG - chr3.1:43232109-43232128 MS.gene72057:intron 35.0%
!!! TTTTGAGATTGAGGTGAACA+CGG - chr3.1:43231246-43231265 MS.gene72057:CDS 35.0%
AAAGATGGTCAAGGTTCTTC+AGG - chr3.1:43232868-43232887 MS.gene72057:intron 40.0%
AAAGGAGATTACGAAGCTTG+GGG - chr3.1:43231288-43231307 MS.gene72057:CDS 40.0%
AAAGTCAATGGAGAAAGGTG+TGG - chr3.1:43232631-43232650 MS.gene72057:CDS 40.0%
AAGGTTGTGGAGAATGGTAA+TGG - chr3.1:43231571-43231590 MS.gene72057:intron 40.0%
ACACGGTCAAAATTATCTCC+TGG + chr3.1:43231121-43231140 None:intergenic 40.0%
ACTAGAAGGTGAAAACGTTG+AGG - chr3.1:43231384-43231403 MS.gene72057:CDS 40.0%
AGAAGATTAGGTTACTGCAC+AGG - chr3.1:43232557-43232576 MS.gene72057:CDS 40.0%
AGATGGTGCAGTGAATTTGA+TGG - chr3.1:43231966-43231985 MS.gene72057:intron 40.0%
AGCAAACCTTGCAACAAGAT+TGG - chr3.1:43232444-43232463 MS.gene72057:CDS 40.0%
AGCACGATGTTGAACCAAAT+TGG - chr3.1:43233619-43233638 MS.gene72057:CDS 40.0%
AGCTCCGAGATACGTTTATA+AGG - chr3.1:43230435-43230454 MS.gene72057:CDS 40.0%
AGGTTGTGGAGAATGGTAAT+GGG - chr3.1:43231572-43231591 MS.gene72057:intron 40.0%
ATCAACTCAAGAGTTGGGAA+AGG - chr3.1:43231218-43231237 MS.gene72057:CDS 40.0%
ATTGTTCTCGTGTTCACCAT+TGG + chr3.1:43233296-43233315 None:intergenic 40.0%
CAACAGTGAATATCCCTTAG+GGG - chr3.1:43232501-43232520 MS.gene72057:CDS 40.0%
CACAGAAAGTCAATGGAGAA+AGG - chr3.1:43232626-43232645 MS.gene72057:CDS 40.0%
CAGTAGCTTAAGCATGAACT+GGG - chr3.1:43233347-43233366 MS.gene72057:CDS 40.0%
CCAAAGAAGAAAGATGGTCA+AGG - chr3.1:43232859-43232878 MS.gene72057:intron 40.0%
CCGAAAAACGGTTCGAAATT+GGG + chr3.1:43230353-43230372 None:intergenic 40.0%
CCTTGACCATCTTTCTTCTT+TGG + chr3.1:43232862-43232881 None:intergenic 40.0%
CTGCTCTTCATTTCCTATTC+TGG - chr3.1:43232341-43232360 MS.gene72057:CDS 40.0%
GAAAGGAGATTACGAAGCTT+GGG - chr3.1:43231287-43231306 MS.gene72057:CDS 40.0%
GAAGGAAGAAAGGAGTAATG+GGG - chr3.1:43230613-43230632 MS.gene72057:intron 40.0%
GAAGTCAATGTGCCAAGTAA+AGG + chr3.1:43232079-43232098 None:intergenic 40.0%
GAATGAAAGACACAAGCTTG+AGG - chr3.1:43232732-43232751 MS.gene72057:CDS 40.0%
GACAAGACTCTTTCACCATA+AGG + chr3.1:43232057-43232076 None:intergenic 40.0%
GATGTTGAACCAAATTGGAG+CGG - chr3.1:43233624-43233643 MS.gene72057:CDS 40.0%
GCACGAAAAAGGCAAATTTG+AGG - chr3.1:43231636-43231655 MS.gene72057:intron 40.0%
GCAGCAACTAAAATTGACAG+TGG - chr3.1:43233586-43233605 MS.gene72057:CDS 40.0%
GGTGAACCAAAGAAGAAAGA+TGG - chr3.1:43232853-43232872 MS.gene72057:intron 40.0%
GTGAAGGAAGAAAGGAGTAA+TGG - chr3.1:43230611-43230630 MS.gene72057:intron 40.0%
GTTGGAAAGAAAGATGCTCT+AGG - chr3.1:43231715-43231734 MS.gene72057:intron 40.0%
GTTTAGCCAATCTTGTTGCA+AGG + chr3.1:43232453-43232472 None:intergenic 40.0%
TATAAACGTATCTCGGAGCT+CGG + chr3.1:43230435-43230454 None:intergenic 40.0%
TCCGAAAAACGGTTCGAAAT+TGG + chr3.1:43230354-43230373 None:intergenic 40.0%
TCTCCTGGAGTAATTCCAAT+TGG + chr3.1:43231106-43231125 None:intergenic 40.0%
TGAAGAGAGTGAAGGAAGAA+AGG - chr3.1:43230603-43230622 MS.gene72057:intron 40.0%
TGTGCTCTGTCATGACATTA+AGG - chr3.1:43231871-43231890 MS.gene72057:intron 40.0%
TTCATGCTTAAGCTACTGCT+GGG + chr3.1:43233345-43233364 None:intergenic 40.0%
TTCGGCTGAAAGGAAAAGAT+TGG - chr3.1:43232828-43232847 MS.gene72057:CDS 40.0%
TTGAGGGGTTGAAGAATAGA+GGG - chr3.1:43231653-43231672 MS.gene72057:intron 40.0%
TTGAGGTGGTGAAGAATAGT+GGG - chr3.1:43232749-43232768 MS.gene72057:CDS 40.0%
TTTGAAGATATGCCACCTTC+TGG + chr3.1:43233441-43233460 None:intergenic 40.0%
TTTGAGGGGTTGAAGAATAG+AGG - chr3.1:43231652-43231671 MS.gene72057:intron 40.0%
TTTGGTGAAGGAAAAGAGAG+GGG - chr3.1:43230742-43230761 MS.gene72057:intron 40.0%
! AAAGATGCTCTAGGTTCTTC+TGG - chr3.1:43231724-43231743 MS.gene72057:intron 40.0%
! AAGAATAGTGGGGATGTTGA+TGG - chr3.1:43232760-43232779 MS.gene72057:CDS 40.0%
! AATGGGCTTGGATTAAATGG+TGG - chr3.1:43231589-43231608 MS.gene72057:intron 40.0%
! AGAATAGTGGGGATGTTGAT+GGG - chr3.1:43232761-43232780 MS.gene72057:CDS 40.0%
! AGGTGAAAACGTTGAGGTTT+TGG - chr3.1:43231390-43231409 MS.gene72057:CDS 40.0%
! AGTAATGGGGAATTAGGGTT+TGG - chr3.1:43230626-43230645 MS.gene72057:intron 40.0%
! GAAAGGAGTAATGGGGAATT+AGG - chr3.1:43230620-43230639 MS.gene72057:intron 40.0%
! GAAATCTGGGTTTTTGTGGA+TGG - chr3.1:43232258-43232277 MS.gene72057:CDS 40.0%
! GCTTGGATTAAATGGTGGAA+AGG - chr3.1:43231594-43231613 MS.gene72057:intron 40.0%
! TGTGCTATTGGTGAACTCAA+AGG - chr3.1:43232790-43232809 MS.gene72057:CDS 40.0%
!! AACAAAGCTTTGGCTTGAGA+GGG + chr3.1:43233187-43233206 None:intergenic 40.0%
!! AAGAAGAGGAAGGTTGGTAA+TGG - chr3.1:43230671-43230690 MS.gene72057:intron 40.0%
!! AAGAATAGAGGGGTTGGTAA+TGG - chr3.1:43231664-43231683 MS.gene72057:intron 40.0%
!! AGAAGAGGAAGGTTGGTAAT+GGG - chr3.1:43230672-43230691 MS.gene72057:intron 40.0%
!! AGAATAGAGGGGTTGGTAAT+GGG - chr3.1:43231665-43231684 MS.gene72057:intron 40.0%
!! CCCAATTTCGAACCGTTTTT+CGG - chr3.1:43230350-43230369 MS.gene72057:CDS 40.0%
!! GGTAATGGGCTTGGATTAAA+TGG - chr3.1:43231586-43231605 MS.gene72057:intron 40.0%
!! GTGAGGAGTTGGTAAAGTTT+AGG - chr3.1:43232653-43232672 MS.gene72057:CDS 40.0%
!! GTTTTGGTGAAGGAAAAGAG+AGG - chr3.1:43230740-43230759 MS.gene72057:intron 40.0%
!! TAACAAAGCTTTGGCTTGAG+AGG + chr3.1:43233188-43233207 None:intergenic 40.0%
!! TGAGGTGTTGAAGAATAGAG+GGG - chr3.1:43231330-43231349 MS.gene72057:CDS 40.0%
!!! AAGGCTCAATTTTGAGGTTG+AGG - chr3.1:43231507-43231526 MS.gene72057:CDS 40.0%
!!! AAGGTTTTGAAAGCTGCAGT+TGG - chr3.1:43231613-43231632 MS.gene72057:intron 40.0%
!!! AGGTTTTGAAAGCTGCAGTT+GGG - chr3.1:43231614-43231633 MS.gene72057:intron 40.0%
!!! GGTCCAATACCATTTTGGTT+AGG + chr3.1:43233541-43233560 None:intergenic 40.0%
!!! GTTGTTTTAACCATGGCAGA+TGG - chr3.1:43231949-43231968 MS.gene72057:intron 40.0%
!!! TGTCAATTTTAGTTGCTGCC+TGG + chr3.1:43233585-43233604 None:intergenic 40.0%
AAAGATGGTGTAGGTGCTTC+AGG - chr3.1:43230782-43230801 MS.gene72057:intron 45.0%
AACCATCTAATTGGAGCTGC+AGG + chr3.1:43233505-43233524 None:intergenic 45.0%
AAGATATGCCACCTTCTGGT+TGG + chr3.1:43233437-43233456 None:intergenic 45.0%
AAGCGACTGAAGAGAAGGTA+GGG - chr3.1:43231179-43231198 MS.gene72057:CDS 45.0%
AATGGAGCTGAAGAGAGTGA+AGG - chr3.1:43230595-43230614 MS.gene72057:intron 45.0%
AATGGGATTGACCTAGACGA+TGG - chr3.1:43232685-43232704 MS.gene72057:CDS 45.0%
ACTTCAAGAGTGGTTAGCAC+CGG + chr3.1:43233562-43233581 None:intergenic 45.0%
ATCAATTCAAGGGTTGGGGA+AGG - chr3.1:43231488-43231507 MS.gene72057:CDS 45.0%
ATGGGATTGACCTAGACGAT+GGG - chr3.1:43232686-43232705 MS.gene72057:CDS 45.0%
ATGGGGAATTAGGGTTTGGA+AGG - chr3.1:43230630-43230649 MS.gene72057:intron 45.0%
ATGTCAAGGATTCGGCTGAA+AGG - chr3.1:43232818-43232837 MS.gene72057:CDS 45.0%
CAGAGCAAGAAAGATGGTGT+AGG - chr3.1:43230773-43230792 MS.gene72057:intron 45.0%
CTCATGAAGGTTGTGGAGAA+TGG - chr3.1:43231565-43231584 MS.gene72057:intron 45.0%
CTTGAGGTGGTGAAGAATAG+TGG - chr3.1:43232748-43232767 MS.gene72057:CDS 45.0%
GCAGTAGCTTAAGCATGAAC+TGG - chr3.1:43233346-43233365 MS.gene72057:CDS 45.0%
GCGACAGTTGTAATTCACAC+TGG + chr3.1:43233413-43233432 None:intergenic 45.0%
GCTGAAAGGAAAAGATTGGC+TGG - chr3.1:43232832-43232851 MS.gene72057:CDS 45.0%
GGAAAGGAGATTACGAAGCT+TGG - chr3.1:43231286-43231305 MS.gene72057:CDS 45.0%
GGTGAACAGAGCAAGAAAGA+TGG - chr3.1:43230767-43230786 MS.gene72057:intron 45.0%
GTGTTGAAGAATAGAGGGGT+TGG - chr3.1:43231334-43231353 MS.gene72057:CDS 45.0%
GTTCATGCTTAAGCTACTGC+TGG + chr3.1:43233346-43233365 None:intergenic 45.0%
GTTGAGGCACAGAAAGTCAA+TGG - chr3.1:43232619-43232638 MS.gene72057:CDS 45.0%
TCAAGACATTCCCATCGTCT+AGG + chr3.1:43232699-43232718 None:intergenic 45.0%
TCTGAACCGGATGACTATCT+CGG - chr3.1:43230400-43230419 MS.gene72057:CDS 45.0%
TGAAAGACACAAGCTTGAGG+TGG - chr3.1:43232735-43232754 MS.gene72057:CDS 45.0%
TGAATATCCCTTAGGGGACA+GGG - chr3.1:43232507-43232526 MS.gene72057:CDS 45.0%
TGAGGGGTTGAAGAATAGAG+GGG - chr3.1:43231654-43231673 MS.gene72057:intron 45.0%
TGAGGTGGTGAAGAATAGTG+GGG - chr3.1:43232750-43232769 MS.gene72057:CDS 45.0%
TGGTCAAGGTTCTTCAGGTA+TGG - chr3.1:43232873-43232892 MS.gene72057:intron 45.0%
! AGATATGCCACCTTCTGGTT+GGG + chr3.1:43233436-43233455 None:intergenic 45.0%
! GAATAGTGGGGATGTTGATG+GGG - chr3.1:43232762-43232781 MS.gene72057:CDS 45.0%
! TGCTCTAGGTTCTTCTGGTA+TGG - chr3.1:43231729-43231748 MS.gene72057:intron 45.0%
! TTAGGGTTTGGAAGGTGTAG+TGG - chr3.1:43230638-43230657 MS.gene72057:intron 45.0%
! TTGGGGAAGGCTCAATTTTG+AGG - chr3.1:43231501-43231520 MS.gene72057:CDS 45.0%
!! AAGAATAGAGGGGTTGGTGA+TGG - chr3.1:43231340-43231359 MS.gene72057:CDS 45.0%
!! ACAAAGCTTTGGCTTGAGAG+GGG + chr3.1:43233186-43233205 None:intergenic 45.0%
!! AGAATAGAGGGGTTGGTGAT+GGG - chr3.1:43231341-43231360 MS.gene72057:CDS 45.0%
!! AGGTGGAAGAGTTTTGGTGA+AGG - chr3.1:43230730-43230749 MS.gene72057:intron 45.0%
!! GAAGAGGAAGGTTGGTAATG+GGG - chr3.1:43230673-43230692 MS.gene72057:intron 45.0%
!! GAATAGAGGGGTTGGTAATG+GGG - chr3.1:43231666-43231685 MS.gene72057:intron 45.0%
!! TTTCGAACCGTTTTTCGGAC+CGG - chr3.1:43230355-43230374 MS.gene72057:CDS 45.0%
!!! AAGGCTCCGTTTTGAGATTG+AGG - chr3.1:43231237-43231256 MS.gene72057:CDS 45.0%
AGACGAGACGCTAGTGGTTA+GGG - chr3.1:43231141-43231160 MS.gene72057:CDS 50.0%
AGCGACTGAAGAGAAGGTAG+GGG - chr3.1:43231180-43231199 MS.gene72057:CDS 50.0%
ATTCACTGCACCATCTGCCA+TGG + chr3.1:43231962-43231981 None:intergenic 50.0%
ATTGAGGTGAACACGGTCAC+AGG - chr3.1:43231253-43231272 MS.gene72057:CDS 50.0%
CAAGACTCTAGTGGTTAGGG+AGG - chr3.1:43231414-43231433 MS.gene72057:CDS 50.0%
CAAGCGACTGAAGAGAAGGT+AGG - chr3.1:43231178-43231197 MS.gene72057:CDS 50.0%
CAATCGTCCGGTCCGAAAAA+CGG + chr3.1:43230365-43230384 None:intergenic 50.0%
CACCTGCAGCTCCAATTAGA+TGG - chr3.1:43233500-43233519 MS.gene72057:CDS 50.0%
CTCCCTAACCACTAGAGTCT+TGG + chr3.1:43231416-43231435 None:intergenic 50.0%
GAAGCAAGCGACTGAAGAGA+AGG - chr3.1:43231174-43231193 MS.gene72057:CDS 50.0%
GCTAACCACTCTTGAAGTCC+AGG - chr3.1:43233564-43233583 MS.gene72057:CDS 50.0%
GGCCAAGACTCTAGTGGTTA+GGG - chr3.1:43231411-43231430 MS.gene72057:CDS 50.0%
GGGTTGAAGAATAGAGGGGT+TGG - chr3.1:43231658-43231677 MS.gene72057:intron 50.0%
GGTTAGGGAGGCAATGTTGA+AGG - chr3.1:43231426-43231445 MS.gene72057:CDS 50.0%
GGTTGAGGTGAAGACAGTCA+CGG - chr3.1:43231522-43231541 MS.gene72057:CDS 50.0%
GTGAAGGAAAAGAGAGGGGT+TGG - chr3.1:43230746-43230765 MS.gene72057:intron 50.0%
GTGAATATCCCTTAGGGGAC+AGG - chr3.1:43232506-43232525 MS.gene72057:CDS 50.0%
GTTGAGGTGAAGACAGTCAC+GGG - chr3.1:43231523-43231542 MS.gene72057:CDS 50.0%
TAGACGAGACGCTAGTGGTT+AGG - chr3.1:43231140-43231159 MS.gene72057:CDS 50.0%
TCATCCGGTTCAGATTGCTC+CGG + chr3.1:43230394-43230413 None:intergenic 50.0%
TCTAATTGGAGCTGCAGGTG+TGG + chr3.1:43233500-43233519 None:intergenic 50.0%
TGAAGACAGTCACGGGAGAA+AGG - chr3.1:43231530-43231549 MS.gene72057:CDS 50.0%
TGAAGTGGGGAAGAAGAGGA+AGG - chr3.1:43230661-43230680 MS.gene72057:intron 50.0%
TGGCCAAGACTCTAGTGGTT+AGG - chr3.1:43231410-43231429 MS.gene72057:CDS 50.0%
TGGTGTAGGTGCTTCAGGTA+TGG - chr3.1:43230787-43230806 MS.gene72057:intron 50.0%
TTTGCTTCCCTGTCCCCTAA+GGG + chr3.1:43232517-43232536 None:intergenic 50.0%
! AGAAAGGTGTGGTGAGGAGT+TGG - chr3.1:43232642-43232661 MS.gene72057:CDS 50.0%
! CAATGGAGAAAGGTGTGGTG+AGG - chr3.1:43232636-43232655 MS.gene72057:CDS 50.0%
! GAAGGTGTAGTGGTGAAGTG+GGG - chr3.1:43230648-43230667 MS.gene72057:intron 50.0%
! GATATGCCACCTTCTGGTTG+GGG + chr3.1:43233435-43233454 None:intergenic 50.0%
! GGAAGGTGTAGTGGTGAAGT+GGG - chr3.1:43230647-43230666 MS.gene72057:intron 50.0%
! TGGAAGGTGTAGTGGTGAAG+TGG - chr3.1:43230646-43230665 MS.gene72057:intron 50.0%
!! GAATAGAGGGGTTGGTGATG+GGG - chr3.1:43231342-43231361 MS.gene72057:CDS 50.0%
!! GCACCGGTCCAATACCATTT+TGG + chr3.1:43233546-43233565 None:intergenic 50.0%
!! GGTGGTGGTGATTTTGAAGG+TGG - chr3.1:43230713-43230732 MS.gene72057:intron 50.0%
!! GGTTTTGGCCAAGACTCTAG+TGG - chr3.1:43231405-43231424 MS.gene72057:CDS 50.0%
!! GTGGAGAATGGTAATGGGCT+TGG - chr3.1:43231577-43231596 MS.gene72057:intron 50.0%
!! GTTGGTAATGGGGTTTCGTG+TGG - chr3.1:43230683-43230702 MS.gene72057:intron 50.0%
!!! GGTGGTGGTGGTGATTTTGA+AGG - chr3.1:43230710-43230729 MS.gene72057:intron 50.0%
AACGGTTCGAAATTGGGCCG+CGG + chr3.1:43230347-43230366 None:intergenic 55.0%
AATGGGGTTTCGTGTGGTGG+TGG - chr3.1:43230689-43230708 MS.gene72057:intron 55.0%
AGCGGAGCTCATGAAGGTTG+TGG - chr3.1:43231558-43231577 MS.gene72057:CDS 55.0%
AGCGGCTGAAGAGAAGGTGA+GGG - chr3.1:43231450-43231469 MS.gene72057:CDS 55.0%
CAGGGAAGCAAAGCTGAAGG+AGG - chr3.1:43232525-43232544 MS.gene72057:CDS 55.0%
CCACTAGCGTCTCGTCTACA+CGG + chr3.1:43231138-43231157 None:intergenic 55.0%
CGAGCTCCGAGATAGTCATC+CGG + chr3.1:43230409-43230428 None:intergenic 55.0%
CTTTGCTTCCCTGTCCCCTA+AGG + chr3.1:43232518-43232537 None:intergenic 55.0%
GATGGGGAGGCTTGTGCTAT+TGG - chr3.1:43232778-43232797 MS.gene72057:CDS 55.0%
GCTGCAGTTGGGCACGAAAA+AGG - chr3.1:43231625-43231644 MS.gene72057:intron 55.0%
GCTGTTGCGGAACTGGATGT+TGG - chr3.1:43231697-43231716 MS.gene72057:intron 55.0%
GGAACCGGAGCAATCTGAAC+CGG - chr3.1:43230387-43230406 MS.gene72057:CDS 55.0%
GGACAGGGAAGCAAAGCTGA+AGG - chr3.1:43232522-43232541 MS.gene72057:CDS 55.0%
GGAGGCAATGTTGAAGGCAG+CGG - chr3.1:43231432-43231451 MS.gene72057:CDS 55.0%
GTGGGGAAGAAGAGGAAGGT+TGG - chr3.1:43230665-43230684 MS.gene72057:intron 55.0%
GTGGTGAAGTGGGGAAGAAG+AGG - chr3.1:43230657-43230676 MS.gene72057:intron 55.0%
TGAACACGGTCACAGGAGGA+AGG - chr3.1:43231260-43231279 MS.gene72057:CDS 55.0%
TGCTGCCTGGACTTCAAGAG+TGG + chr3.1:43233572-43233591 None:intergenic 55.0%
! CACAGGAGGAAGGCATGGAA+AGG - chr3.1:43231270-43231289 MS.gene72057:CDS 55.0%
! CACTGGCCCGAAAGCCATTT+TGG + chr3.1:43233396-43233415 None:intergenic 55.0%
! TAGTGGGGATGTTGATGGGG+AGG - chr3.1:43232765-43232784 MS.gene72057:CDS 55.0%
! TTTTCGGACCGGACGATTGG+CGG - chr3.1:43230366-43230385 MS.gene72057:CDS 55.0%
!! CGTTTTTCGGACCGGACGAT+TGG - chr3.1:43230363-43230382 MS.gene72057:CDS 55.0%
!! GGTAATGGGGTTTCGTGTGG+TGG - chr3.1:43230686-43230705 MS.gene72057:intron 55.0%
!! TAGAGGGGTTGGTAATGGGG+AGG - chr3.1:43231669-43231688 MS.gene72057:intron 55.0%
ACGGTCACAGGAGGAAGGCA+TGG - chr3.1:43231265-43231284 MS.gene72057:CDS 60.0%
CAACTGTCGCCCCAACCAGA+AGG - chr3.1:43233423-43233442 MS.gene72057:CDS 60.0%
CAGCGGCTGAAGAGAAGGTG+AGG - chr3.1:43231449-43231468 MS.gene72057:CDS 60.0%
CCGTGTAGACGAGACGCTAG+TGG - chr3.1:43231135-43231154 MS.gene72057:CDS 60.0%
GAAGGCAGCGGCTGAAGAGA+AGG - chr3.1:43231444-43231463 MS.gene72057:CDS 60.0%
GAGGTGAACACGGTCACAGG+AGG - chr3.1:43231256-43231275 MS.gene72057:CDS 60.0%
GCGTGAAGCGGAGCTCATGA+AGG - chr3.1:43231552-43231571 MS.gene72057:CDS 60.0%
! CACGGGAGAAAGGCGTGAAG+CGG - chr3.1:43231540-43231559 MS.gene72057:CDS 60.0%
! GGCTTGTGCTGTTGCGGAAC+TGG - chr3.1:43231690-43231709 MS.gene72057:intron 60.0%
! TGGGGAGGCTTGTGCTGTTG+CGG - chr3.1:43231684-43231703 MS.gene72057:intron 60.0%
!! GTTTCGTGTGGTGGTGGTGG+TGG - chr3.1:43230695-43230714 MS.gene72057:intron 60.0%
!! TAGAGGGGTTGGTGATGGGG+AGG - chr3.1:43231345-43231364 MS.gene72057:CDS 60.0%
CTCCGGTTCCGCCAATCGTC+CGG + chr3.1:43230377-43230396 None:intergenic 65.0%
CTGTCGCCCCAACCAGAAGG+TGG - chr3.1:43233426-43233445 MS.gene72057:CDS 65.0%
GACCGGACGATTGGCGGAAC+CGG - chr3.1:43230372-43230391 MS.gene72057:CDS 65.0%
!! GGGGTTTCGTGTGGTGGTGG+TGG - chr3.1:43230692-43230711 MS.gene72057:intron 65.0%
!! TCGTGTGGTGGTGGTGGTGG+TGG - chr3.1:43230698-43230717 MS.gene72057:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 43230338 43233654 43230338 ID=MS.gene72057
chr3.1 mRNA 43230338 43233654 43230338 ID=MS.gene72057.t1;Parent=MS.gene72057
chr3.1 exon 43233189 43233654 43233189 ID=MS.gene72057.t1.exon1;Parent=MS.gene72057.t1
chr3.1 CDS 43233189 43233654 43233189 ID=cds.MS.gene72057.t1;Parent=MS.gene72057.t1
chr3.1 exon 43232247 43232870 43232247 ID=MS.gene72057.t1.exon2;Parent=MS.gene72057.t1
chr3.1 CDS 43232247 43232870 43232247 ID=cds.MS.gene72057.t1;Parent=MS.gene72057.t1
chr3.1 exon 43231103 43231582 43231103 ID=MS.gene72057.t1.exon3;Parent=MS.gene72057.t1
chr3.1 CDS 43231103 43231582 43231103 ID=cds.MS.gene72057.t1;Parent=MS.gene72057.t1
chr3.1 exon 43230338 43230483 43230338 ID=MS.gene72057.t1.exon4;Parent=MS.gene72057.t1
chr3.1 CDS 43230338 43230483 43230338 ID=cds.MS.gene72057.t1;Parent=MS.gene72057.t1
Gene Sequence

>MS.gene72057

ATGGAACCGCGGCCCAATTTCGAACCGTTTTTCGGACCGGACGATTGGCGGAACCGGAGCAATCTGAACCGGATGACTATCTCGGAGCTCGTATCCGAGCTCCGAGATACGTTTATAAGGTCAGATTTCGACCTTGTTGAAGAAACCCTAATTGCTAGGGAAGAAAAGTTAAAAGGTGAGATTGATGAGAAGAAGAATGAAATTGAGTTGTTAAAAGAGAAATTTGATATGTTGATGTTGGAAAAGGTTAGTGTTGAAATGGAGCTGAAGAGAGTGAAGGAAGAAAGGAGTAATGGGGAATTAGGGTTTGGAAGGTGTAGTGGTGAAGTGGGGAAGAAGAGGAAGGTTGGTAATGGGGTTTCGTGTGGTGGTGGTGGTGGTGGTGATTTTGAAGGTGGAAGAGTTTTGGTGAAGGAAAAGAGAGGGGTTGGTGAACAGAGCAAGAAAGATGGTGTAGGTGCTTCAGGTATGGTGATTTTAAGTACTTTTTTGATGATTATGTTTGTTTAAGTGCTTTTTTGATGATTATGTTTGTGTAAGTGCTTTTTTGATGATTATGTTTGTTTAAGTGCTTTTTTTGATGATTATGTTTGCATACATTATTATTGAGTATGTATGTTTGGTTGGTTCGACGTTGACGAAAATTGATTTTACTAAAACGATATTAAAAACCCGTATTTGATGAAGAATTATCATTGTTTTAAATACTTTTAGAATTTTAATTAGTAGTTAAGTTATATTGGGTTTTGTTTTTTTATGTTTAAACCAATTGGAATTACTCCAGGAGATAATTTTGACCGTGTAGACGAGACGCTAGTGGTTAGGGAAGCAATGTTGAAGCAAGCGACTGAAGAGAAGGTAGGGGAACTACTTGAGAATAATCAACTCAAGAGTTGGGAAAGGCTCCGTTTTGAGATTGAGGTGAACACGGTCACAGGAGGAAGGCATGGAAAGGAGATTACGAAGCTTGGGGATAATGAAAAATACAAATTTGAGGTGTTGAAGAATAGAGGGGTTGGTGATGGGGAGGCTTATTCTGTTGTTGAACTAGAAGGTGAAAACGTTGAGGTTTTGGCCAAGACTCTAGTGGTTAGGGAGGCAATGTTGAAGGCAGCGGCTGAAGAGAAGGTGAGGGAATTACAAGAGAATGATCAATTCAAGGGTTGGGGAAGGCTCAATTTTGAGGTTGAGGTGAAGACAGTCACGGGAGAAAGGCGTGAAGCGGAGCTCATGAAGGTTGTGGAGAATGGTAATGGGCTTGGATTAAATGGTGGAAAGGTTTTGAAAGCTGCAGTTGGGCACGAAAAAGGCAAATTTGAGGGGTTGAAGAATAGAGGGGTTGGTAATGGGGAGGCTTGTGCTGTTGCGGAACTGGATGTTGGAAAGAAAGATGCTCTAGGTTCTTCTGGTATGGATATTTTATTTGCTTGTTTGCTGCCTATGTATGCATTCTTTAATGTTACCTGAAGAAACAACAAAAATTGCAATGTTTTGTTAGTATTATGATCAAGATAATTTGTTGGACACTAGTTTTGTGCTCTGTCATGACATTAAGGCAGTGTCTATGTCACAATTACGATTAGTGGAGTCAAGAATAGTTGTAGAATGGATGTTGTTTTAACCATGGCAGATGGTGCAGTGAATTTGATGGAAAAAATGGTGAATTTTTGTGTTTAAAACTTTGTTGCACAAAACTCAGGAATGTGCTTGTATTTGCCTTATGGTGAAAGAGTCTTGTCCTTTACTTGGCACATTGACTTCTACATTGCTCTACCTGTTCCTTTTTCAGTTTGGTTAGAGAATACTATGCAGTTTATTGGCAGGGTATCCTCGACTCATGTCTTTTGAAATTCATTTGATGTAACTAGTAATATAAGGCTCAGCATTATGTTTTGGCATTTTTATTTGTAAAATTTAGTAGAAATCTGGGTTTTTGTGGATGGCCACTTAATTTTCATGAACGTGGAAAAATTGGCAATATTGTACAAGGGTTATAAACTCTACTGCTCTTCATTTCCTATTCTGGAAGTAATTAATTGTTGGCTGATCTATTATGTCACATTTAATTGCAGATACTGAGCAGCTAAGTTCATCAAGAGCAGTAAAAGCAAACCTTGCAACAAGATTGGCTAAACCCACTGATATAATGTCAGGTAATGATATCAACAGTGAATATCCCTTAGGGGACAGGGAAGCAAAGCTGAAGGAGGAAATTGAAGAGAAGATTAGGTTACTGCACAGGAAGAATCAATTTAAGAGCTTGGTACTACATGATTTTGATGTTGAGGCACAGAAAGTCAATGGAGAAAGGTGTGGTGAGGAGTTGGTAAAGTTTAGGGAGAATGGTAATGGGATTGACCTAGACGATGGGAATGTCTTGAAAGCTGAATTGGGGAATGAAAGACACAAGCTTGAGGTGGTGAAGAATAGTGGGGATGTTGATGGGGAGGCTTGTGCTATTGGTGAACTCAAAGGTGAAAATGTCAAGGATTCGGCTGAAAGGAAAAGATTGGCTGGTGAACCAAAGAAGAAAGATGGTCAAGGTTCTTCAGGTATGGAGTTTTTAACTGCTTCTTTGCTAACTATATGTATTTTGAATATGAAAGAAACTAAACACTAACCTCTATTTGGCGAGATATTAGACTCCTAGTCCTATATAAAAAGATAAGTTAAAAAACAAATCATGATAATAACTAAGAAATATGCAAACTAATCTTAGGAGATTGTCTATGATACTATAATATTAGAAATTAATCTTAAGGGATAAGCCACTATACTTTAACACAATATTAGTATATTCTAAGTTTTTTTTGTTTTTTTTTTTTTAATATTATCAATTCTATTACCCCTCTCAAGCCAAAGCTTTGTTAGCTTTAAGCTTGTTATAAATGTATATCCTTAGTTGAAAAGTATAACACCCAACTTAATCAAAACCCAAAAAGATATTTTGATAAACCAATGGTGAACACGAGAACAATTTAATTATTAGTCAATAAAGTTTGTGCCCAGCAGTAGCTTAAGCATGAACTGGGAGATGACACAACTTCAAATCAAACCAAAATGGCTTTCGGGCCAGTGTGAATTACAACTGTCGCCCCAACCAGAAGGTGGCATATCTTCAAACCAAACCAAACAAAAACAGTTTTCTGTCACTGTTAACCACACCTGCAGCTCCAATTAGATGGTTTTACCTCTTCAAACCTAACCAAAATGGTATTGGACCGGTGCTAACCACTCTTGAAGTCCAGGCAGCAACTAAAATTGACAGTGGTGTTTGTGGCAGCACGATGTTGAACCAAATTGGAGCGGTACATTGA

Protein sequence

>MS.gene72057.t1

MEPRPNFEPFFGPDDWRNRSNLNRMTISELVSELRDTFIRSDFDLVEETLIAREEKLKGEIDEKKNEIELLKEKFDMLMLEKVSVEMELKRVKEERSNGELGFGRCSGEVGKKRKVGNGVSCGGGGGGDFEGGRVLVKEKRGVGEQSKKDGVGASGDNFDRVDETLVVREAMLKQATEEKVGELLENNQLKSWERLRFEIEVNTVTGGRHGKEITKLGDNEKYKFEVLKNRGVGDGEAYSVVELEGENVEVLAKTLVVREAMLKAAAEEKVRELQENDQFKGWGRLNFEVEVKTVTGERREAELMKVVENGNGLGLNGGKVLKAAVGHEKGKFEGLKNRGVGNGEACAVAELDVGKKDALGSSDTEQLSSSRAVKANLATRLAKPTDIMSGNDINSEYPLGDREAKLKEEIEEKIRLLHRKNQFKSLVLHDFDVEAQKVNGERCGEELVKFRENGNGIDLDDGNVLKAELGNERHKLEVVKNSGDVDGEACAIGELKGENVKDSAERKRLAGEPKKKDGQGSSAPIRWFYLFKPNQNGIGPVLTTLEVQAATKIDSGVCGSTMLNQIGAVH