Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72057.t1 | XP_013459971.1 | 76.4 | 525 | 85 | 6 | 1 | 522 | 1 | 489 | 4.20E-201 | 711.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72057.t1 | A0A072UWM6 | 76.4 | 525 | 85 | 6 | 1 | 522 | 1 | 489 | 3.1e-201 | 711.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052358 | MS.gene72057 | -0.803273 | 3.77E-49 | -1.69E-46 |
MS.gene052519 | MS.gene72057 | 0.813564 | 2.40E-51 | -1.69E-46 |
MS.gene05548 | MS.gene72057 | 0.802056 | 6.72E-49 | -1.69E-46 |
MS.gene057060 | MS.gene72057 | 0.802725 | 4.90E-49 | -1.69E-46 |
MS.gene05954 | MS.gene72057 | 0.81208 | 5.07E-51 | -1.69E-46 |
MS.gene060634 | MS.gene72057 | -0.806002 | 1.02E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72057.t1 | MTR_3g056730 | 76.571 | 525 | 84 | 6 | 1 | 522 | 1 | 489 | 0.0 | 703 |
MS.gene72057.t1 | MTR_3g056730 | 39.098 | 399 | 163 | 12 | 42 | 396 | 161 | 523 | 7.06e-47 | 173 |
MS.gene72057.t1 | MTR_3g057330 | 55.814 | 172 | 47 | 5 | 1 | 156 | 1 | 159 | 4.63e-32 | 122 |
MS.gene72057.t1 | MTR_3g057160 | 52.258 | 155 | 50 | 3 | 12 | 155 | 16 | 157 | 6.34e-26 | 105 |
MS.gene72057.t1 | MTR_3g057030 | 52.586 | 116 | 35 | 2 | 12 | 116 | 24 | 130 | 1.76e-21 | 91.3 |
MS.gene72057.t1 | MTR_3g056755 | 53.774 | 106 | 38 | 1 | 22 | 116 | 1 | 106 | 6.42e-18 | 81.6 |
MS.gene72057.t1 | MTR_8g016620 | 55.340 | 103 | 35 | 1 | 25 | 116 | 1 | 103 | 9.43e-18 | 79.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 188 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAGGAGTAATGGGGAATT+AGG | 0.182122 | 3.1:-43233350 | MS.gene72057:CDS |
CCTTGACCATCTTTCTTCTT+TGG | 0.207341 | 3.1:+43231111 | None:intergenic |
AAGAGGTAAAACCATCTAAT+TGG | 0.236209 | 3.1:+43230459 | None:intergenic |
GCACCGGTCCAATACCATTT+TGG | 0.247957 | 3.1:+43230427 | None:intergenic |
GGTAATGGGCTTGGATTAAA+TGG | 0.276370 | 3.1:-43232384 | MS.gene72057:CDS |
AGGTGAAAACGTTGAGGTTT+TGG | 0.277673 | 3.1:-43232580 | MS.gene72057:CDS |
GTGAGGAGTTGGTAAAGTTT+AGG | 0.285312 | 3.1:-43231317 | MS.gene72057:CDS |
TGAGGAGTTGGTAAAGTTTA+GGG | 0.291130 | 3.1:-43231316 | MS.gene72057:CDS |
GCTGCAGTTGGGCACGAAAA+AGG | 0.292482 | 3.1:-43232345 | MS.gene72057:CDS |
GGCTTGTGCTGTTGCGGAAC+TGG | 0.296718 | 3.1:-43232280 | MS.gene72057:CDS |
AAAGATGCTCTAGGTTCTTC+TGG | 0.304704 | 3.1:-43232246 | MS.gene72057:intron |
CTCAATGTACCGCTCCAATT+TGG | 0.304740 | 3.1:+43230337 | None:intergenic |
AGAATAGAGGGGTTGGTAAT+GGG | 0.305592 | 3.1:-43232305 | MS.gene72057:CDS |
GATGGGGAGGCTTGTGCTAT+TGG | 0.313811 | 3.1:-43231192 | MS.gene72057:CDS |
AAAGATGGTGTAGGTGCTTC+AGG | 0.318345 | 3.1:-43233188 | MS.gene72057:intron |
TGAAGGAAGAAAGGAGTAAT+GGG | 0.320371 | 3.1:-43233358 | MS.gene72057:CDS |
GCTAGGGAAGAAAAGTTAAA+AGG | 0.323691 | 3.1:-43233479 | MS.gene72057:CDS |
AAAGATGGTCAAGGTTCTTC+AGG | 0.328828 | 3.1:-43231102 | MS.gene72057:intron |
CTCTTCAAACCTAACCAAAA+TGG | 0.334109 | 3.1:-43230441 | MS.gene72057:CDS |
GTTTCGTGTGGTGGTGGTGG+TGG | 0.338025 | 3.1:-43233275 | MS.gene72057:CDS |
GAATGATCAATTCAAGGGTT+GGG | 0.342077 | 3.1:-43232487 | MS.gene72057:CDS |
TGGCCAAGACTCTAGTGGTT+AGG | 0.342174 | 3.1:-43232560 | MS.gene72057:CDS |
AGGAAATTGAAGAGAAGATT+AGG | 0.342554 | 3.1:-43231425 | MS.gene72057:CDS |
AGCACGATGTTGAACCAAAT+TGG | 0.349649 | 3.1:-43230351 | MS.gene72057:CDS |
TAGACGAGACGCTAGTGGTT+AGG | 0.352615 | 3.1:-43232830 | MS.gene72057:CDS |
GAATGTCTTGAAAGCTGAAT+TGG | 0.366498 | 3.1:-43231262 | MS.gene72057:CDS |
AGAAGAGGAAGGTTGGTAAT+GGG | 0.369141 | 3.1:-43233298 | MS.gene72057:CDS |
TATTCTGTTGTTGAACTAGA+AGG | 0.373210 | 3.1:-43232600 | MS.gene72057:CDS |
AAAGGAGTAATGGGGAATTA+GGG | 0.373435 | 3.1:-43233349 | MS.gene72057:CDS |
GGCCAAGACTCTAGTGGTTA+GGG | 0.393087 | 3.1:-43232559 | MS.gene72057:CDS |
CACCTGCAGCTCCAATTAGA+TGG | 0.394345 | 3.1:-43230470 | MS.gene72057:intron |
GTGGAGAATGGTAATGGGCT+TGG | 0.402569 | 3.1:-43232393 | MS.gene72057:CDS |
TGGAAGGTGTAGTGGTGAAG+TGG | 0.405749 | 3.1:-43233324 | MS.gene72057:CDS |
CTTTGCTTCCCTGTCCCCTA+AGG | 0.406376 | 3.1:+43231455 | None:intergenic |
AGAATAGAGGGGTTGGTGAT+GGG | 0.410347 | 3.1:-43232629 | MS.gene72057:CDS |
TTTGAGGTGTTGAAGAATAG+AGG | 0.410883 | 3.1:-43232642 | MS.gene72057:CDS |
GAAAGGAGATTACGAAGCTT+GGG | 0.410918 | 3.1:-43232683 | MS.gene72057:CDS |
AAACCTAACCAAAATGGTAT+TGG | 0.415009 | 3.1:-43230435 | MS.gene72057:CDS |
AAGAATAGAGGGGTTGGTAA+TGG | 0.418976 | 3.1:-43232306 | MS.gene72057:CDS |
GACCGGACGATTGGCGGAAC+CGG | 0.421193 | 3.1:-43233598 | MS.gene72057:CDS |
TTGGTAAAGTTTAGGGAGAA+TGG | 0.424096 | 3.1:-43231309 | MS.gene72057:CDS |
CTCCGGTTCCGCCAATCGTC+CGG | 0.428014 | 3.1:+43233596 | None:intergenic |
AGTAATGGGGAATTAGGGTT+TGG | 0.430269 | 3.1:-43233344 | MS.gene72057:CDS |
GGAAAAGGTTAGTGTTGAAA+TGG | 0.431642 | 3.1:-43233393 | MS.gene72057:CDS |
GAAATTTGATATGTTGATGT+TGG | 0.433409 | 3.1:-43233414 | MS.gene72057:CDS |
AGAATAATCAACTCAAGAGT+TGG | 0.434885 | 3.1:-43232758 | MS.gene72057:CDS |
AAGAATAGAGGGGTTGGTGA+TGG | 0.435736 | 3.1:-43232630 | MS.gene72057:CDS |
TTTGAGGGGTTGAAGAATAG+AGG | 0.435861 | 3.1:-43232318 | MS.gene72057:CDS |
AATGTCTTGAAAGCTGAATT+GGG | 0.440423 | 3.1:-43231261 | MS.gene72057:CDS |
AGCAAACCTTGCAACAAGAT+TGG | 0.440924 | 3.1:-43231526 | MS.gene72057:CDS |
GGGGTTTCGTGTGGTGGTGG+TGG | 0.441901 | 3.1:-43233278 | MS.gene72057:CDS |
GGTAATGGGGTTTCGTGTGG+TGG | 0.444977 | 3.1:-43233284 | MS.gene72057:CDS |
AAGAATAGTGGGGATGTTGA+TGG | 0.446678 | 3.1:-43231210 | MS.gene72057:CDS |
CTTGAGGTGGTGAAGAATAG+TGG | 0.446970 | 3.1:-43231222 | MS.gene72057:CDS |
GTGAATATCCCTTAGGGGAC+AGG | 0.454513 | 3.1:-43231464 | MS.gene72057:CDS |
AATGGGGTTTCGTGTGGTGG+TGG | 0.456149 | 3.1:-43233281 | MS.gene72057:CDS |
AGCTCCGAGATACGTTTATA+AGG | 0.459337 | 3.1:-43233535 | MS.gene72057:CDS |
TGAAGAGAGTGAAGGAAGAA+AGG | 0.461439 | 3.1:-43233367 | MS.gene72057:CDS |
GTGAAGGAAGAAAGGAGTAA+TGG | 0.462189 | 3.1:-43233359 | MS.gene72057:CDS |
GGAAAGGAGATTACGAAGCT+TGG | 0.464408 | 3.1:-43232684 | MS.gene72057:CDS |
AGGTGAAAATGTCAAGGATT+CGG | 0.464930 | 3.1:-43231160 | MS.gene72057:CDS |
CTCATGAAGGTTGTGGAGAA+TGG | 0.465265 | 3.1:-43232405 | MS.gene72057:CDS |
ACAAGAGAATGATCAATTCA+AGG | 0.466933 | 3.1:-43232493 | MS.gene72057:CDS |
TTGAAGAAACCCTAATTGCT+AGG | 0.467341 | 3.1:-43233496 | MS.gene72057:CDS |
AAGAAGAGGAAGGTTGGTAA+TGG | 0.467999 | 3.1:-43233299 | MS.gene72057:CDS |
AAGTTTAGGGAGAATGGTAA+TGG | 0.471532 | 3.1:-43231303 | MS.gene72057:CDS |
GAAGAATCAATTTAAGAGCT+TGG | 0.473315 | 3.1:-43231391 | MS.gene72057:CDS |
GTGAAGGAAAAGAGAGGGGT+TGG | 0.479471 | 3.1:-43233224 | MS.gene72057:CDS |
GAATAGAGGGGTTGGTAATG+GGG | 0.480773 | 3.1:-43232304 | MS.gene72057:CDS |
TGATATGTTGATGTTGGAAA+AGG | 0.480946 | 3.1:-43233408 | MS.gene72057:CDS |
AGTTTAGGGAGAATGGTAAT+GGG | 0.481093 | 3.1:-43231302 | MS.gene72057:CDS |
AGACGAGACGCTAGTGGTTA+GGG | 0.483500 | 3.1:-43232829 | MS.gene72057:CDS |
TTGAGGTGGTGAAGAATAGT+GGG | 0.483995 | 3.1:-43231221 | MS.gene72057:CDS |
AGAATAGTGGGGATGTTGAT+GGG | 0.484279 | 3.1:-43231209 | MS.gene72057:CDS |
TCAACAGTGAATATCCCTTA+GGG | 0.484341 | 3.1:-43231470 | MS.gene72057:CDS |
GAATAATCAACTCAAGAGTT+GGG | 0.484753 | 3.1:-43232757 | MS.gene72057:CDS |
GAAGAGGAAGGTTGGTAATG+GGG | 0.485969 | 3.1:-43233297 | MS.gene72057:CDS |
GAATAGAGGGGTTGGTGATG+GGG | 0.490835 | 3.1:-43232628 | MS.gene72057:CDS |
GGAAGGTGTAGTGGTGAAGT+GGG | 0.491846 | 3.1:-43233323 | MS.gene72057:CDS |
GTGGGGAAGAAGAGGAAGGT+TGG | 0.493367 | 3.1:-43233305 | MS.gene72057:CDS |
CTCCCTAACCACTAGAGTCT+TGG | 0.493940 | 3.1:+43232557 | None:intergenic |
GTGGTGAAGTGGGGAAGAAG+AGG | 0.495354 | 3.1:-43233313 | MS.gene72057:CDS |
TTGAGGGGTTGAAGAATAGA+GGG | 0.495709 | 3.1:-43232317 | MS.gene72057:CDS |
TTGAGGTGTTGAAGAATAGA+GGG | 0.497604 | 3.1:-43232641 | MS.gene72057:CDS |
TGAAGACAGTCACGGGAGAA+AGG | 0.502692 | 3.1:-43232440 | MS.gene72057:CDS |
ATCAACAGTGAATATCCCTT+AGG | 0.505771 | 3.1:-43231471 | MS.gene72057:CDS |
AGAATGATCAATTCAAGGGT+TGG | 0.506620 | 3.1:-43232488 | MS.gene72057:CDS |
CAAGAGAATGATCAATTCAA+GGG | 0.510678 | 3.1:-43232492 | MS.gene72057:CDS |
AAGCGACTGAAGAGAAGGTA+GGG | 0.514282 | 3.1:-43232791 | MS.gene72057:CDS |
GGTTAGGGAGGCAATGTTGA+AGG | 0.514625 | 3.1:-43232544 | MS.gene72057:CDS |
GTTGGTAATGGGGTTTCGTG+TGG | 0.519370 | 3.1:-43233287 | MS.gene72057:CDS |
CTGACCTTATAAACGTATCT+CGG | 0.522430 | 3.1:+43233531 | None:intergenic |
GTTGAGGCACAGAAAGTCAA+TGG | 0.526558 | 3.1:-43231351 | MS.gene72057:CDS |
GGAACCGGAGCAATCTGAAC+CGG | 0.528517 | 3.1:-43233583 | MS.gene72057:CDS |
CAAATTGGAGCGGTACATTG+AGG | 0.529126 | 3.1:-43230336 | None:intergenic |
TTCGGCTGAAAGGAAAAGAT+TGG | 0.530262 | 3.1:-43231142 | MS.gene72057:CDS |
AAAATTGACAGTGGTGTTTG+TGG | 0.531387 | 3.1:-43230375 | MS.gene72057:CDS |
TTAGGGTTTGGAAGGTGTAG+TGG | 0.533992 | 3.1:-43233332 | MS.gene72057:CDS |
AGCGGAGCTCATGAAGGTTG+TGG | 0.535387 | 3.1:-43232412 | MS.gene72057:CDS |
AAGGTTGTGGAGAATGGTAA+TGG | 0.536654 | 3.1:-43232399 | MS.gene72057:CDS |
CAAGCGACTGAAGAGAAGGT+AGG | 0.536948 | 3.1:-43232792 | MS.gene72057:CDS |
TTTGCTTCCCTGTCCCCTAA+GGG | 0.537294 | 3.1:+43231456 | None:intergenic |
GCTAACCACTCTTGAAGTCC+AGG | 0.539468 | 3.1:-43230406 | MS.gene72057:CDS |
GTTTAGCCAATCTTGTTGCA+AGG | 0.541391 | 3.1:+43231520 | None:intergenic |
CAATTAGGGTTTCTTCAACA+AGG | 0.543284 | 3.1:+43233501 | None:intergenic |
AATGATCAATTCAAGGGTTG+GGG | 0.544266 | 3.1:-43232486 | MS.gene72057:CDS |
TGAAGAAACCCTAATTGCTA+GGG | 0.547195 | 3.1:-43233495 | MS.gene72057:CDS |
ATTGAGGTGAACACGGTCAC+AGG | 0.549420 | 3.1:-43232717 | MS.gene72057:CDS |
TGGGGAGGCTTGTGCTGTTG+CGG | 0.549478 | 3.1:-43232286 | MS.gene72057:CDS |
AAACCCACTGATATAATGTC+AGG | 0.550200 | 3.1:-43231501 | MS.gene72057:CDS |
ATGGGGAATTAGGGTTTGGA+AGG | 0.550708 | 3.1:-43233340 | MS.gene72057:CDS |
TAGAGGGGTTGGTGATGGGG+AGG | 0.550711 | 3.1:-43232625 | MS.gene72057:CDS |
GAAGGCAGCGGCTGAAGAGA+AGG | 0.552001 | 3.1:-43232526 | MS.gene72057:CDS |
AGGTTGTGGAGAATGGTAAT+GGG | 0.553988 | 3.1:-43232398 | MS.gene72057:CDS |
AGAAGATTAGGTTACTGCAC+AGG | 0.554303 | 3.1:-43231413 | MS.gene72057:CDS |
AGAAAGGTGTGGTGAGGAGT+TGG | 0.555115 | 3.1:-43231328 | MS.gene72057:CDS |
CCACTAGCGTCTCGTCTACA+CGG | 0.558048 | 3.1:+43232835 | None:intergenic |
TTTGGTGAAGGAAAAGAGAG+GGG | 0.558869 | 3.1:-43233228 | MS.gene72057:CDS |
CACAGAAAGTCAATGGAGAA+AGG | 0.559886 | 3.1:-43231344 | MS.gene72057:CDS |
GGAGGCAATGTTGAAGGCAG+CGG | 0.560044 | 3.1:-43232538 | MS.gene72057:CDS |
GCTTGGATTAAATGGTGGAA+AGG | 0.560127 | 3.1:-43232376 | MS.gene72057:CDS |
TCAAGACATTCCCATCGTCT+AGG | 0.560666 | 3.1:+43231274 | None:intergenic |
TGAGGTGTTGAAGAATAGAG+GGG | 0.561820 | 3.1:-43232640 | MS.gene72057:CDS |
ATGTCAAGGATTCGGCTGAA+AGG | 0.565218 | 3.1:-43231152 | MS.gene72057:CDS |
TTACCTGACATTATATCAGT+GGG | 0.567901 | 3.1:+43231498 | None:intergenic |
AACGGTTCGAAATTGGGCCG+CGG | 0.568883 | 3.1:+43233626 | None:intergenic |
GAATAGTGGGGATGTTGATG+GGG | 0.569033 | 3.1:-43231208 | MS.gene72057:CDS |
GGTGAACCAAAGAAGAAAGA+TGG | 0.570911 | 3.1:-43231117 | MS.gene72057:CDS |
TGAAGTGGGGAAGAAGAGGA+AGG | 0.571245 | 3.1:-43233309 | MS.gene72057:CDS |
GCTGAAAGGAAAAGATTGGC+TGG | 0.571500 | 3.1:-43231138 | MS.gene72057:CDS |
GAAGCAAGCGACTGAAGAGA+AGG | 0.571880 | 3.1:-43232796 | MS.gene72057:CDS |
GCTGTTGCGGAACTGGATGT+TGG | 0.573739 | 3.1:-43232273 | MS.gene72057:CDS |
CAGCGGCTGAAGAGAAGGTG+AGG | 0.574750 | 3.1:-43232521 | MS.gene72057:CDS |
ATCAATTCAAGGGTTGGGGA+AGG | 0.576290 | 3.1:-43232482 | MS.gene72057:CDS |
CAATGGAGAAAGGTGTGGTG+AGG | 0.579211 | 3.1:-43231334 | MS.gene72057:CDS |
TAACCAAAATGGTATTGGAC+CGG | 0.579693 | 3.1:-43230430 | MS.gene72057:CDS |
ATTACCTGACATTATATCAG+TGG | 0.580124 | 3.1:+43231497 | None:intergenic |
CACAGGAGGAAGGCATGGAA+AGG | 0.580422 | 3.1:-43232700 | MS.gene72057:CDS |
TCTGAACCGGATGACTATCT+CGG | 0.580906 | 3.1:-43233570 | MS.gene72057:CDS |
ACGGTCACAGGAGGAAGGCA+TGG | 0.583130 | 3.1:-43232705 | MS.gene72057:CDS |
TGAATATCCCTTAGGGGACA+GGG | 0.584280 | 3.1:-43231463 | MS.gene72057:CDS |
GGGTTGAAGAATAGAGGGGT+TGG | 0.584413 | 3.1:-43232312 | MS.gene72057:CDS |
GGTGAACAGAGCAAGAAAGA+TGG | 0.584880 | 3.1:-43233203 | MS.gene72057:CDS |
TGTTCACCTCAATCTCAAAA+CGG | 0.586515 | 3.1:+43232727 | None:intergenic |
CACGGGAGAAAGGCGTGAAG+CGG | 0.587340 | 3.1:-43232430 | MS.gene72057:CDS |
TAGTGGGGATGTTGATGGGG+AGG | 0.587822 | 3.1:-43231205 | MS.gene72057:CDS |
GTTGGAAAGAAAGATGCTCT+AGG | 0.595591 | 3.1:-43232255 | MS.gene72057:CDS |
TCATCCGGTTCAGATTGCTC+CGG | 0.598916 | 3.1:+43233579 | None:intergenic |
GGACAGGGAAGCAAAGCTGA+AGG | 0.599361 | 3.1:-43231448 | MS.gene72057:CDS |
AGCGGCTGAAGAGAAGGTGA+GGG | 0.600067 | 3.1:-43232520 | MS.gene72057:CDS |
AATGGAGCTGAAGAGAGTGA+AGG | 0.601883 | 3.1:-43233375 | MS.gene72057:CDS |
TGAGGGGTTGAAGAATAGAG+GGG | 0.604683 | 3.1:-43232316 | MS.gene72057:CDS |
TGCTGCCTGGACTTCAAGAG+TGG | 0.606394 | 3.1:+43230401 | None:intergenic |
GCGTGAAGCGGAGCTCATGA+AGG | 0.606657 | 3.1:-43232418 | MS.gene72057:CDS |
GAAGGAAGAAAGGAGTAATG+GGG | 0.610158 | 3.1:-43233357 | MS.gene72057:CDS |
TGTGCTATTGGTGAACTCAA+AGG | 0.612601 | 3.1:-43231180 | MS.gene72057:CDS |
ATCAACTCAAGAGTTGGGAA+AGG | 0.613118 | 3.1:-43232752 | MS.gene72057:CDS |
ACTAGAAGGTGAAAACGTTG+AGG | 0.614135 | 3.1:-43232586 | MS.gene72057:CDS |
TATAAACGTATCTCGGAGCT+CGG | 0.614929 | 3.1:+43233538 | None:intergenic |
CCGTGTAGACGAGACGCTAG+TGG | 0.616681 | 3.1:-43232835 | MS.gene72057:CDS |
AGCGACTGAAGAGAAGGTAG+GGG | 0.616894 | 3.1:-43232790 | MS.gene72057:CDS |
GTTGAGGTGAAGACAGTCAC+GGG | 0.618797 | 3.1:-43232447 | MS.gene72057:CDS |
ATGGGATTGACCTAGACGAT+GGG | 0.623349 | 3.1:-43231284 | MS.gene72057:CDS |
TGAACACGGTCACAGGAGGA+AGG | 0.623523 | 3.1:-43232710 | MS.gene72057:CDS |
CCAAAGAAGAAAGATGGTCA+AGG | 0.626663 | 3.1:-43231111 | MS.gene72057:CDS |
ACTCAAAGGTGAAAATGTCA+AGG | 0.630430 | 3.1:-43231166 | MS.gene72057:CDS |
CAGAGCAAGAAAGATGGTGT+AGG | 0.632696 | 3.1:-43233197 | MS.gene72057:CDS |
CAGGGAAGCAAAGCTGAAGG+AGG | 0.633850 | 3.1:-43231445 | MS.gene72057:CDS |
CGAGCTCCGAGATAGTCATC+CGG | 0.633991 | 3.1:+43233564 | None:intergenic |
GAATGAAAGACACAAGCTTG+AGG | 0.634993 | 3.1:-43231238 | MS.gene72057:CDS |
ACTTCAAGAGTGGTTAGCAC+CGG | 0.635036 | 3.1:+43230411 | None:intergenic |
TAGAGGGGTTGGTAATGGGG+AGG | 0.638423 | 3.1:-43232301 | MS.gene72057:CDS |
AATGGGCTTGGATTAAATGG+TGG | 0.645914 | 3.1:-43232381 | MS.gene72057:CDS |
GAGGTGAACACGGTCACAGG+AGG | 0.650216 | 3.1:-43232714 | MS.gene72057:CDS |
GAAGGTGTAGTGGTGAAGTG+GGG | 0.652743 | 3.1:-43233322 | MS.gene72057:CDS |
GTGTTGAAGAATAGAGGGGT+TGG | 0.652928 | 3.1:-43232636 | MS.gene72057:CDS |
CAAGACTCTAGTGGTTAGGG+AGG | 0.659317 | 3.1:-43232556 | MS.gene72057:CDS |
ATGTCTTGAAAGCTGAATTG+GGG | 0.663640 | 3.1:-43231260 | MS.gene72057:CDS |
GGTTGAGGTGAAGACAGTCA+CGG | 0.672238 | 3.1:-43232448 | MS.gene72057:CDS |
AAAGGAGATTACGAAGCTTG+GGG | 0.675080 | 3.1:-43232682 | MS.gene72057:CDS |
AATGGGATTGACCTAGACGA+TGG | 0.675239 | 3.1:-43231285 | MS.gene72057:CDS |
TGAAAGACACAAGCTTGAGG+TGG | 0.678335 | 3.1:-43231235 | MS.gene72057:CDS |
AAAGTCAATGGAGAAAGGTG+TGG | 0.681382 | 3.1:-43231339 | MS.gene72057:CDS |
CAACAGTGAATATCCCTTAG+GGG | 0.696163 | 3.1:-43231469 | MS.gene72057:CDS |
GCTTCACGCTCATGGAACCG+CGG | 0.699483 | 3.1:-43233643 | None:intergenic |
GATGTTGAACCAAATTGGAG+CGG | 0.723634 | 3.1:-43230346 | MS.gene72057:CDS |
TGAGGTGGTGAAGAATAGTG+GGG | 0.725161 | 3.1:-43231220 | MS.gene72057:CDS |
GCAGCAACTAAAATTGACAG+TGG | 0.729128 | 3.1:-43230384 | MS.gene72057:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTAGAAATTAATCTTA+AGG | - | chr3.1:43233077-43233096 | MS.gene72057:intron | 10.0% |
!! | ATATTAGAAATTAATCTTAA+GGG | - | chr3.1:43233078-43233097 | MS.gene72057:intron | 10.0% |
!!! | TTTAACTTATCTTTTTATAT+AGG | + | chr3.1:43232992-43233011 | None:intergenic | 10.0% |
!! | AATTAGTAGTTAAGTTATAT+TGG | - | chr3.1:43231058-43231077 | MS.gene72057:intron | 15.0% |
!! | ATTAGTAGTTAAGTTATATT+GGG | - | chr3.1:43231059-43231078 | MS.gene72057:intron | 15.0% |
!! | TAATGAAAAATACAAATTTG+AGG | - | chr3.1:43231312-43231331 | MS.gene72057:CDS | 15.0% |
!!! | GTTTATCAAAATATCTTTTT+GGG | + | chr3.1:43233274-43233293 | None:intergenic | 15.0% |
!!! | TTTTTTATGTTTAAACCAAT+TGG | - | chr3.1:43231088-43231107 | MS.gene72057:intron | 15.0% |
!! | AATATTGTGTTAAAGTATAG+TGG | + | chr3.1:43233109-43233128 | None:intergenic | 20.0% |
!! | GTAAAATTTAGTAGAAATCT+GGG | - | chr3.1:43232245-43232264 | MS.gene72057:intron | 20.0% |
!! | TATTATTGAGTATGTATGTT+TGG | - | chr3.1:43230938-43230957 | MS.gene72057:intron | 20.0% |
!! | TGATAATTCTTCATCAAATA+CGG | + | chr3.1:43231013-43231032 | None:intergenic | 20.0% |
!! | TGTAAAATTTAGTAGAAATC+TGG | - | chr3.1:43232244-43232263 | MS.gene72057:intron | 20.0% |
!! | TTGATGTAACTAGTAATATA+AGG | - | chr3.1:43232193-43232212 | MS.gene72057:intron | 20.0% |
!!! | AAGATATTTTGATAAACCAA+TGG | - | chr3.1:43233277-43233296 | MS.gene72057:CDS | 20.0% |
!!! | GGTTTATCAAAATATCTTTT+TGG | + | chr3.1:43233275-43233294 | None:intergenic | 20.0% |
!!! | TTATCTTTTTATATAGGACT+AGG | + | chr3.1:43232986-43233005 | None:intergenic | 20.0% |
!!! | TTATGATCAAGATAATTTGT+TGG | - | chr3.1:43231838-43231857 | MS.gene72057:intron | 20.0% |
! | AAAATTGGCAATATTGTACA+AGG | - | chr3.1:43232305-43232324 | MS.gene72057:CDS | 25.0% |
! | AAATTGGCAATATTGTACAA+GGG | - | chr3.1:43232306-43232325 | MS.gene72057:CDS | 25.0% |
! | AACTTCAAATCAAACCAAAA+TGG | - | chr3.1:43233379-43233398 | MS.gene72057:CDS | 25.0% |
! | ACATTAAAGAATGCATACAT+AGG | + | chr3.1:43231778-43231797 | None:intergenic | 25.0% |
! | AGTGAATTTGATGGAAAAAA+TGG | - | chr3.1:43231975-43231994 | MS.gene72057:intron | 25.0% |
! | CAATTAATTACTTCCAGAAT+AGG | + | chr3.1:43232357-43232376 | None:intergenic | 25.0% |
! | GAAATATGCAAACTAATCTT+AGG | - | chr3.1:43233035-43233054 | MS.gene72057:intron | 25.0% |
! | GAAATTTGATATGTTGATGT+TGG | - | chr3.1:43230556-43230575 | MS.gene72057:intron | 25.0% |
! | GATAATTCTTCATCAAATAC+GGG | + | chr3.1:43231012-43231031 | None:intergenic | 25.0% |
!! | TTCTGGAAGTAATTAATTGT+TGG | - | chr3.1:43232358-43232377 | MS.gene72057:CDS | 25.0% |
!!! | AAAACTGTTTTTGTTTGGTT+TGG | + | chr3.1:43233464-43233483 | None:intergenic | 25.0% |
!!! | TTTTGGGTTTTGATTAAGTT+GGG | + | chr3.1:43233258-43233277 | None:intergenic | 25.0% |
!!! | TTTTTGGGTTTTGATTAAGT+TGG | + | chr3.1:43233259-43233278 | None:intergenic | 25.0% |
AAACCTAACCAAAATGGTAT+TGG | - | chr3.1:43233535-43233554 | MS.gene72057:CDS | 30.0% | |
AAGAGGTAAAACCATCTAAT+TGG | + | chr3.1:43233514-43233533 | None:intergenic | 30.0% | |
AATCAAACCAAAATGGCTTT+CGG | - | chr3.1:43233386-43233405 | MS.gene72057:CDS | 30.0% | |
AATGTCTTGAAAGCTGAATT+GGG | - | chr3.1:43232709-43232728 | MS.gene72057:CDS | 30.0% | |
ACAAGAGAATGATCAATTCA+AGG | - | chr3.1:43231477-43231496 | MS.gene72057:CDS | 30.0% | |
ACTAAACACTAACCTCTATT+TGG | - | chr3.1:43232946-43232965 | MS.gene72057:intron | 30.0% | |
AGAATAATCAACTCAAGAGT+TGG | - | chr3.1:43231212-43231231 | MS.gene72057:CDS | 30.0% | |
AGGAAATTGAAGAGAAGATT+AGG | - | chr3.1:43232545-43232564 | MS.gene72057:CDS | 30.0% | |
AGTCAAGAATAGTTGTAGAA+TGG | - | chr3.1:43231924-43231943 | MS.gene72057:intron | 30.0% | |
ATTACCTGACATTATATCAG+TGG | + | chr3.1:43232476-43232495 | None:intergenic | 30.0% | |
ATTGAGTATGTATGTTTGGT+TGG | - | chr3.1:43230942-43230961 | MS.gene72057:intron | 30.0% | |
CAAGAGAATGATCAATTCAA+GGG | - | chr3.1:43231478-43231497 | MS.gene72057:CDS | 30.0% | |
GAAGAATCAATTTAAGAGCT+TGG | - | chr3.1:43232579-43232598 | MS.gene72057:CDS | 30.0% | |
GAATAATCAACTCAAGAGTT+GGG | - | chr3.1:43231213-43231232 | MS.gene72057:CDS | 30.0% | |
GAGAATACTATGCAGTTTAT+TGG | - | chr3.1:43232135-43232154 | MS.gene72057:intron | 30.0% | |
TATGTCACAATTACGATTAG+TGG | - | chr3.1:43231901-43231920 | MS.gene72057:intron | 30.0% | |
TATTCTGTTGTTGAACTAGA+AGG | - | chr3.1:43231370-43231389 | MS.gene72057:CDS | 30.0% | |
TGATATGTTGATGTTGGAAA+AGG | - | chr3.1:43230562-43230581 | MS.gene72057:intron | 30.0% | |
TTACCTGACATTATATCAGT+GGG | + | chr3.1:43232475-43232494 | None:intergenic | 30.0% | |
TTCTCTAACCAAACTGAAAA+AGG | + | chr3.1:43232120-43232139 | None:intergenic | 30.0% | |
TTTCATGAACGTGGAAAAAT+TGG | - | chr3.1:43232290-43232309 | MS.gene72057:CDS | 30.0% | |
!! | ACTACATGATTTTGATGTTG+AGG | - | chr3.1:43232603-43232622 | MS.gene72057:CDS | 30.0% |
!! | GGTGTTATACTTTTCAACTA+AGG | + | chr3.1:43233237-43233256 | None:intergenic | 30.0% |
!!! | AATGGATGTTGTTTTAACCA+TGG | - | chr3.1:43231942-43231961 | MS.gene72057:intron | 30.0% |
!!! | GACAGAAAACTGTTTTTGTT+TGG | + | chr3.1:43233469-43233488 | None:intergenic | 30.0% |
!!! | GCAATTTTTGTTGTTTCTTC+AGG | + | chr3.1:43231803-43231822 | None:intergenic | 30.0% |
AAAATTGACAGTGGTGTTTG+TGG | - | chr3.1:43233595-43233614 | MS.gene72057:CDS | 35.0% | |
AAACCAATTGGAATTACTCC+AGG | - | chr3.1:43231100-43231119 | MS.gene72057:intron | 35.0% | |
AAACCCACTGATATAATGTC+AGG | - | chr3.1:43232469-43232488 | MS.gene72057:CDS | 35.0% | |
AACCAAACTGAAAAAGGAAC+AGG | + | chr3.1:43232114-43232133 | None:intergenic | 35.0% | |
AACTTTGTTGCACAAAACTC+AGG | - | chr3.1:43232015-43232034 | MS.gene72057:intron | 35.0% | |
AAGTTTAGGGAGAATGGTAA+TGG | - | chr3.1:43232667-43232686 | MS.gene72057:CDS | 35.0% | |
AATGATCAATTCAAGGGTTG+GGG | - | chr3.1:43231484-43231503 | MS.gene72057:CDS | 35.0% | |
ACGAAAAAGGCAAATTTGAG+GGG | - | chr3.1:43231638-43231657 | MS.gene72057:intron | 35.0% | |
ACTCAAAGGTGAAAATGTCA+AGG | - | chr3.1:43232804-43232823 | MS.gene72057:CDS | 35.0% | |
AGAATGATCAATTCAAGGGT+TGG | - | chr3.1:43231482-43231501 | MS.gene72057:CDS | 35.0% | |
AGGTGAAAATGTCAAGGATT+CGG | - | chr3.1:43232810-43232829 | MS.gene72057:CDS | 35.0% | |
AGTTTAGGGAGAATGGTAAT+GGG | - | chr3.1:43232668-43232687 | MS.gene72057:CDS | 35.0% | |
ATACTATGCAGTTTATTGGC+AGG | - | chr3.1:43232139-43232158 | MS.gene72057:intron | 35.0% | |
ATCAAACCAAAATGGCTTTC+GGG | - | chr3.1:43233387-43233406 | MS.gene72057:CDS | 35.0% | |
ATCAACAGTGAATATCCCTT+AGG | - | chr3.1:43232499-43232518 | MS.gene72057:CDS | 35.0% | |
ATGTCTTGAAAGCTGAATTG+GGG | - | chr3.1:43232710-43232729 | MS.gene72057:CDS | 35.0% | |
ATGTGCTTGTATTTGCCTTA+TGG | - | chr3.1:43232039-43232058 | MS.gene72057:intron | 35.0% | |
ATTTCAAAAGACATGAGTCG+AGG | + | chr3.1:43232169-43232188 | None:intergenic | 35.0% | |
CAATTAGGGTTTCTTCAACA+AGG | + | chr3.1:43230472-43230491 | None:intergenic | 35.0% | |
CACGAAAAAGGCAAATTTGA+GGG | - | chr3.1:43231637-43231656 | MS.gene72057:intron | 35.0% | |
CCACGTTCATGAAAATTAAG+TGG | + | chr3.1:43232284-43232303 | None:intergenic | 35.0% | |
CTCTTCAAACCTAACCAAAA+TGG | - | chr3.1:43233529-43233548 | MS.gene72057:CDS | 35.0% | |
CTGACCTTATAAACGTATCT+CGG | + | chr3.1:43230442-43230461 | None:intergenic | 35.0% | |
GAATGATCAATTCAAGGGTT+GGG | - | chr3.1:43231483-43231502 | MS.gene72057:CDS | 35.0% | |
GAATGTCTTGAAAGCTGAAT+TGG | - | chr3.1:43232708-43232727 | MS.gene72057:CDS | 35.0% | |
GCTAGGGAAGAAAAGTTAAA+AGG | - | chr3.1:43230491-43230510 | MS.gene72057:intron | 35.0% | |
GCTTAAAGCTAACAAAGCTT+TGG | + | chr3.1:43233197-43233216 | None:intergenic | 35.0% | |
TACTATGCAGTTTATTGGCA+GGG | - | chr3.1:43232140-43232159 | MS.gene72057:intron | 35.0% | |
TCAACAGTGAATATCCCTTA+GGG | - | chr3.1:43232500-43232519 | MS.gene72057:CDS | 35.0% | |
TCTAATATCTCGCCAAATAG+AGG | + | chr3.1:43232961-43232980 | None:intergenic | 35.0% | |
TGAAGAAACCCTAATTGCTA+GGG | - | chr3.1:43230475-43230494 | MS.gene72057:intron | 35.0% | |
TGAAGGAAGAAAGGAGTAAT+GGG | - | chr3.1:43230612-43230631 | MS.gene72057:intron | 35.0% | |
TGTTCACCTCAATCTCAAAA+CGG | + | chr3.1:43231246-43231265 | None:intergenic | 35.0% | |
TTGAAGAAACCCTAATTGCT+AGG | - | chr3.1:43230474-43230493 | MS.gene72057:intron | 35.0% | |
TTGGTAAAGTTTAGGGAGAA+TGG | - | chr3.1:43232661-43232680 | MS.gene72057:CDS | 35.0% | |
! | AAAGAGTCTTGTCCTTTACT+TGG | - | chr3.1:43232064-43232083 | MS.gene72057:intron | 35.0% |
! | AAAGGAGTAATGGGGAATTA+GGG | - | chr3.1:43230621-43230640 | MS.gene72057:intron | 35.0% |
! | ACTTTTCTTCCCTAGCAATT+AGG | + | chr3.1:43230487-43230506 | None:intergenic | 35.0% |
! | AGTAGAAATCTGGGTTTTTG+TGG | - | chr3.1:43232254-43232273 | MS.gene72057:CDS | 35.0% |
! | CCACTTAATTTTCATGAACG+TGG | - | chr3.1:43232281-43232300 | MS.gene72057:CDS | 35.0% |
! | CTTTTCTTCCCTAGCAATTA+GGG | + | chr3.1:43230486-43230505 | None:intergenic | 35.0% |
! | GGAAAAGGTTAGTGTTGAAA+TGG | - | chr3.1:43230577-43230596 | MS.gene72057:intron | 35.0% |
! | TAACCAAAATGGTATTGGAC+CGG | - | chr3.1:43233540-43233559 | MS.gene72057:CDS | 35.0% |
! | TAAGGCTCAGCATTATGTTT+TGG | - | chr3.1:43232211-43232230 | MS.gene72057:intron | 35.0% |
! | TTTTGGTGAAGGAAAAGAGA+GGG | - | chr3.1:43230741-43230760 | MS.gene72057:intron | 35.0% |
!! | TGAGGAGTTGGTAAAGTTTA+GGG | - | chr3.1:43232654-43232673 | MS.gene72057:CDS | 35.0% |
!! | TTGAGGTGTTGAAGAATAGA+GGG | - | chr3.1:43231329-43231348 | MS.gene72057:CDS | 35.0% |
!! | TTTGAGGTGTTGAAGAATAG+AGG | - | chr3.1:43231328-43231347 | MS.gene72057:CDS | 35.0% |
!! | TTTTGAAGGTGGAAGAGTTT+TGG | - | chr3.1:43230724-43230743 | MS.gene72057:intron | 35.0% |
!!! | CATTTTGGTTAGGTTTGAAG+AGG | + | chr3.1:43233531-43233550 | None:intergenic | 35.0% |
!!! | TACCTGTTCCTTTTTCAGTT+TGG | - | chr3.1:43232109-43232128 | MS.gene72057:intron | 35.0% |
!!! | TTTTGAGATTGAGGTGAACA+CGG | - | chr3.1:43231246-43231265 | MS.gene72057:CDS | 35.0% |
AAAGATGGTCAAGGTTCTTC+AGG | - | chr3.1:43232868-43232887 | MS.gene72057:intron | 40.0% | |
AAAGGAGATTACGAAGCTTG+GGG | - | chr3.1:43231288-43231307 | MS.gene72057:CDS | 40.0% | |
AAAGTCAATGGAGAAAGGTG+TGG | - | chr3.1:43232631-43232650 | MS.gene72057:CDS | 40.0% | |
AAGGTTGTGGAGAATGGTAA+TGG | - | chr3.1:43231571-43231590 | MS.gene72057:intron | 40.0% | |
ACACGGTCAAAATTATCTCC+TGG | + | chr3.1:43231121-43231140 | None:intergenic | 40.0% | |
ACTAGAAGGTGAAAACGTTG+AGG | - | chr3.1:43231384-43231403 | MS.gene72057:CDS | 40.0% | |
AGAAGATTAGGTTACTGCAC+AGG | - | chr3.1:43232557-43232576 | MS.gene72057:CDS | 40.0% | |
AGATGGTGCAGTGAATTTGA+TGG | - | chr3.1:43231966-43231985 | MS.gene72057:intron | 40.0% | |
AGCAAACCTTGCAACAAGAT+TGG | - | chr3.1:43232444-43232463 | MS.gene72057:CDS | 40.0% | |
AGCACGATGTTGAACCAAAT+TGG | - | chr3.1:43233619-43233638 | MS.gene72057:CDS | 40.0% | |
AGCTCCGAGATACGTTTATA+AGG | - | chr3.1:43230435-43230454 | MS.gene72057:CDS | 40.0% | |
AGGTTGTGGAGAATGGTAAT+GGG | - | chr3.1:43231572-43231591 | MS.gene72057:intron | 40.0% | |
ATCAACTCAAGAGTTGGGAA+AGG | - | chr3.1:43231218-43231237 | MS.gene72057:CDS | 40.0% | |
ATTGTTCTCGTGTTCACCAT+TGG | + | chr3.1:43233296-43233315 | None:intergenic | 40.0% | |
CAACAGTGAATATCCCTTAG+GGG | - | chr3.1:43232501-43232520 | MS.gene72057:CDS | 40.0% | |
CACAGAAAGTCAATGGAGAA+AGG | - | chr3.1:43232626-43232645 | MS.gene72057:CDS | 40.0% | |
CAGTAGCTTAAGCATGAACT+GGG | - | chr3.1:43233347-43233366 | MS.gene72057:CDS | 40.0% | |
CCAAAGAAGAAAGATGGTCA+AGG | - | chr3.1:43232859-43232878 | MS.gene72057:intron | 40.0% | |
CCGAAAAACGGTTCGAAATT+GGG | + | chr3.1:43230353-43230372 | None:intergenic | 40.0% | |
CCTTGACCATCTTTCTTCTT+TGG | + | chr3.1:43232862-43232881 | None:intergenic | 40.0% | |
CTGCTCTTCATTTCCTATTC+TGG | - | chr3.1:43232341-43232360 | MS.gene72057:CDS | 40.0% | |
GAAAGGAGATTACGAAGCTT+GGG | - | chr3.1:43231287-43231306 | MS.gene72057:CDS | 40.0% | |
GAAGGAAGAAAGGAGTAATG+GGG | - | chr3.1:43230613-43230632 | MS.gene72057:intron | 40.0% | |
GAAGTCAATGTGCCAAGTAA+AGG | + | chr3.1:43232079-43232098 | None:intergenic | 40.0% | |
GAATGAAAGACACAAGCTTG+AGG | - | chr3.1:43232732-43232751 | MS.gene72057:CDS | 40.0% | |
GACAAGACTCTTTCACCATA+AGG | + | chr3.1:43232057-43232076 | None:intergenic | 40.0% | |
GATGTTGAACCAAATTGGAG+CGG | - | chr3.1:43233624-43233643 | MS.gene72057:CDS | 40.0% | |
GCACGAAAAAGGCAAATTTG+AGG | - | chr3.1:43231636-43231655 | MS.gene72057:intron | 40.0% | |
GCAGCAACTAAAATTGACAG+TGG | - | chr3.1:43233586-43233605 | MS.gene72057:CDS | 40.0% | |
GGTGAACCAAAGAAGAAAGA+TGG | - | chr3.1:43232853-43232872 | MS.gene72057:intron | 40.0% | |
GTGAAGGAAGAAAGGAGTAA+TGG | - | chr3.1:43230611-43230630 | MS.gene72057:intron | 40.0% | |
GTTGGAAAGAAAGATGCTCT+AGG | - | chr3.1:43231715-43231734 | MS.gene72057:intron | 40.0% | |
GTTTAGCCAATCTTGTTGCA+AGG | + | chr3.1:43232453-43232472 | None:intergenic | 40.0% | |
TATAAACGTATCTCGGAGCT+CGG | + | chr3.1:43230435-43230454 | None:intergenic | 40.0% | |
TCCGAAAAACGGTTCGAAAT+TGG | + | chr3.1:43230354-43230373 | None:intergenic | 40.0% | |
TCTCCTGGAGTAATTCCAAT+TGG | + | chr3.1:43231106-43231125 | None:intergenic | 40.0% | |
TGAAGAGAGTGAAGGAAGAA+AGG | - | chr3.1:43230603-43230622 | MS.gene72057:intron | 40.0% | |
TGTGCTCTGTCATGACATTA+AGG | - | chr3.1:43231871-43231890 | MS.gene72057:intron | 40.0% | |
TTCATGCTTAAGCTACTGCT+GGG | + | chr3.1:43233345-43233364 | None:intergenic | 40.0% | |
TTCGGCTGAAAGGAAAAGAT+TGG | - | chr3.1:43232828-43232847 | MS.gene72057:CDS | 40.0% | |
TTGAGGGGTTGAAGAATAGA+GGG | - | chr3.1:43231653-43231672 | MS.gene72057:intron | 40.0% | |
TTGAGGTGGTGAAGAATAGT+GGG | - | chr3.1:43232749-43232768 | MS.gene72057:CDS | 40.0% | |
TTTGAAGATATGCCACCTTC+TGG | + | chr3.1:43233441-43233460 | None:intergenic | 40.0% | |
TTTGAGGGGTTGAAGAATAG+AGG | - | chr3.1:43231652-43231671 | MS.gene72057:intron | 40.0% | |
TTTGGTGAAGGAAAAGAGAG+GGG | - | chr3.1:43230742-43230761 | MS.gene72057:intron | 40.0% | |
! | AAAGATGCTCTAGGTTCTTC+TGG | - | chr3.1:43231724-43231743 | MS.gene72057:intron | 40.0% |
! | AAGAATAGTGGGGATGTTGA+TGG | - | chr3.1:43232760-43232779 | MS.gene72057:CDS | 40.0% |
! | AATGGGCTTGGATTAAATGG+TGG | - | chr3.1:43231589-43231608 | MS.gene72057:intron | 40.0% |
! | AGAATAGTGGGGATGTTGAT+GGG | - | chr3.1:43232761-43232780 | MS.gene72057:CDS | 40.0% |
! | AGGTGAAAACGTTGAGGTTT+TGG | - | chr3.1:43231390-43231409 | MS.gene72057:CDS | 40.0% |
! | AGTAATGGGGAATTAGGGTT+TGG | - | chr3.1:43230626-43230645 | MS.gene72057:intron | 40.0% |
! | GAAAGGAGTAATGGGGAATT+AGG | - | chr3.1:43230620-43230639 | MS.gene72057:intron | 40.0% |
! | GAAATCTGGGTTTTTGTGGA+TGG | - | chr3.1:43232258-43232277 | MS.gene72057:CDS | 40.0% |
! | GCTTGGATTAAATGGTGGAA+AGG | - | chr3.1:43231594-43231613 | MS.gene72057:intron | 40.0% |
! | TGTGCTATTGGTGAACTCAA+AGG | - | chr3.1:43232790-43232809 | MS.gene72057:CDS | 40.0% |
!! | AACAAAGCTTTGGCTTGAGA+GGG | + | chr3.1:43233187-43233206 | None:intergenic | 40.0% |
!! | AAGAAGAGGAAGGTTGGTAA+TGG | - | chr3.1:43230671-43230690 | MS.gene72057:intron | 40.0% |
!! | AAGAATAGAGGGGTTGGTAA+TGG | - | chr3.1:43231664-43231683 | MS.gene72057:intron | 40.0% |
!! | AGAAGAGGAAGGTTGGTAAT+GGG | - | chr3.1:43230672-43230691 | MS.gene72057:intron | 40.0% |
!! | AGAATAGAGGGGTTGGTAAT+GGG | - | chr3.1:43231665-43231684 | MS.gene72057:intron | 40.0% |
!! | CCCAATTTCGAACCGTTTTT+CGG | - | chr3.1:43230350-43230369 | MS.gene72057:CDS | 40.0% |
!! | GGTAATGGGCTTGGATTAAA+TGG | - | chr3.1:43231586-43231605 | MS.gene72057:intron | 40.0% |
!! | GTGAGGAGTTGGTAAAGTTT+AGG | - | chr3.1:43232653-43232672 | MS.gene72057:CDS | 40.0% |
!! | GTTTTGGTGAAGGAAAAGAG+AGG | - | chr3.1:43230740-43230759 | MS.gene72057:intron | 40.0% |
!! | TAACAAAGCTTTGGCTTGAG+AGG | + | chr3.1:43233188-43233207 | None:intergenic | 40.0% |
!! | TGAGGTGTTGAAGAATAGAG+GGG | - | chr3.1:43231330-43231349 | MS.gene72057:CDS | 40.0% |
!!! | AAGGCTCAATTTTGAGGTTG+AGG | - | chr3.1:43231507-43231526 | MS.gene72057:CDS | 40.0% |
!!! | AAGGTTTTGAAAGCTGCAGT+TGG | - | chr3.1:43231613-43231632 | MS.gene72057:intron | 40.0% |
!!! | AGGTTTTGAAAGCTGCAGTT+GGG | - | chr3.1:43231614-43231633 | MS.gene72057:intron | 40.0% |
!!! | GGTCCAATACCATTTTGGTT+AGG | + | chr3.1:43233541-43233560 | None:intergenic | 40.0% |
!!! | GTTGTTTTAACCATGGCAGA+TGG | - | chr3.1:43231949-43231968 | MS.gene72057:intron | 40.0% |
!!! | TGTCAATTTTAGTTGCTGCC+TGG | + | chr3.1:43233585-43233604 | None:intergenic | 40.0% |
AAAGATGGTGTAGGTGCTTC+AGG | - | chr3.1:43230782-43230801 | MS.gene72057:intron | 45.0% | |
AACCATCTAATTGGAGCTGC+AGG | + | chr3.1:43233505-43233524 | None:intergenic | 45.0% | |
AAGATATGCCACCTTCTGGT+TGG | + | chr3.1:43233437-43233456 | None:intergenic | 45.0% | |
AAGCGACTGAAGAGAAGGTA+GGG | - | chr3.1:43231179-43231198 | MS.gene72057:CDS | 45.0% | |
AATGGAGCTGAAGAGAGTGA+AGG | - | chr3.1:43230595-43230614 | MS.gene72057:intron | 45.0% | |
AATGGGATTGACCTAGACGA+TGG | - | chr3.1:43232685-43232704 | MS.gene72057:CDS | 45.0% | |
ACTTCAAGAGTGGTTAGCAC+CGG | + | chr3.1:43233562-43233581 | None:intergenic | 45.0% | |
ATCAATTCAAGGGTTGGGGA+AGG | - | chr3.1:43231488-43231507 | MS.gene72057:CDS | 45.0% | |
ATGGGATTGACCTAGACGAT+GGG | - | chr3.1:43232686-43232705 | MS.gene72057:CDS | 45.0% | |
ATGGGGAATTAGGGTTTGGA+AGG | - | chr3.1:43230630-43230649 | MS.gene72057:intron | 45.0% | |
ATGTCAAGGATTCGGCTGAA+AGG | - | chr3.1:43232818-43232837 | MS.gene72057:CDS | 45.0% | |
CAGAGCAAGAAAGATGGTGT+AGG | - | chr3.1:43230773-43230792 | MS.gene72057:intron | 45.0% | |
CTCATGAAGGTTGTGGAGAA+TGG | - | chr3.1:43231565-43231584 | MS.gene72057:intron | 45.0% | |
CTTGAGGTGGTGAAGAATAG+TGG | - | chr3.1:43232748-43232767 | MS.gene72057:CDS | 45.0% | |
GCAGTAGCTTAAGCATGAAC+TGG | - | chr3.1:43233346-43233365 | MS.gene72057:CDS | 45.0% | |
GCGACAGTTGTAATTCACAC+TGG | + | chr3.1:43233413-43233432 | None:intergenic | 45.0% | |
GCTGAAAGGAAAAGATTGGC+TGG | - | chr3.1:43232832-43232851 | MS.gene72057:CDS | 45.0% | |
GGAAAGGAGATTACGAAGCT+TGG | - | chr3.1:43231286-43231305 | MS.gene72057:CDS | 45.0% | |
GGTGAACAGAGCAAGAAAGA+TGG | - | chr3.1:43230767-43230786 | MS.gene72057:intron | 45.0% | |
GTGTTGAAGAATAGAGGGGT+TGG | - | chr3.1:43231334-43231353 | MS.gene72057:CDS | 45.0% | |
GTTCATGCTTAAGCTACTGC+TGG | + | chr3.1:43233346-43233365 | None:intergenic | 45.0% | |
GTTGAGGCACAGAAAGTCAA+TGG | - | chr3.1:43232619-43232638 | MS.gene72057:CDS | 45.0% | |
TCAAGACATTCCCATCGTCT+AGG | + | chr3.1:43232699-43232718 | None:intergenic | 45.0% | |
TCTGAACCGGATGACTATCT+CGG | - | chr3.1:43230400-43230419 | MS.gene72057:CDS | 45.0% | |
TGAAAGACACAAGCTTGAGG+TGG | - | chr3.1:43232735-43232754 | MS.gene72057:CDS | 45.0% | |
TGAATATCCCTTAGGGGACA+GGG | - | chr3.1:43232507-43232526 | MS.gene72057:CDS | 45.0% | |
TGAGGGGTTGAAGAATAGAG+GGG | - | chr3.1:43231654-43231673 | MS.gene72057:intron | 45.0% | |
TGAGGTGGTGAAGAATAGTG+GGG | - | chr3.1:43232750-43232769 | MS.gene72057:CDS | 45.0% | |
TGGTCAAGGTTCTTCAGGTA+TGG | - | chr3.1:43232873-43232892 | MS.gene72057:intron | 45.0% | |
! | AGATATGCCACCTTCTGGTT+GGG | + | chr3.1:43233436-43233455 | None:intergenic | 45.0% |
! | GAATAGTGGGGATGTTGATG+GGG | - | chr3.1:43232762-43232781 | MS.gene72057:CDS | 45.0% |
! | TGCTCTAGGTTCTTCTGGTA+TGG | - | chr3.1:43231729-43231748 | MS.gene72057:intron | 45.0% |
! | TTAGGGTTTGGAAGGTGTAG+TGG | - | chr3.1:43230638-43230657 | MS.gene72057:intron | 45.0% |
! | TTGGGGAAGGCTCAATTTTG+AGG | - | chr3.1:43231501-43231520 | MS.gene72057:CDS | 45.0% |
!! | AAGAATAGAGGGGTTGGTGA+TGG | - | chr3.1:43231340-43231359 | MS.gene72057:CDS | 45.0% |
!! | ACAAAGCTTTGGCTTGAGAG+GGG | + | chr3.1:43233186-43233205 | None:intergenic | 45.0% |
!! | AGAATAGAGGGGTTGGTGAT+GGG | - | chr3.1:43231341-43231360 | MS.gene72057:CDS | 45.0% |
!! | AGGTGGAAGAGTTTTGGTGA+AGG | - | chr3.1:43230730-43230749 | MS.gene72057:intron | 45.0% |
!! | GAAGAGGAAGGTTGGTAATG+GGG | - | chr3.1:43230673-43230692 | MS.gene72057:intron | 45.0% |
!! | GAATAGAGGGGTTGGTAATG+GGG | - | chr3.1:43231666-43231685 | MS.gene72057:intron | 45.0% |
!! | TTTCGAACCGTTTTTCGGAC+CGG | - | chr3.1:43230355-43230374 | MS.gene72057:CDS | 45.0% |
!!! | AAGGCTCCGTTTTGAGATTG+AGG | - | chr3.1:43231237-43231256 | MS.gene72057:CDS | 45.0% |
AGACGAGACGCTAGTGGTTA+GGG | - | chr3.1:43231141-43231160 | MS.gene72057:CDS | 50.0% | |
AGCGACTGAAGAGAAGGTAG+GGG | - | chr3.1:43231180-43231199 | MS.gene72057:CDS | 50.0% | |
ATTCACTGCACCATCTGCCA+TGG | + | chr3.1:43231962-43231981 | None:intergenic | 50.0% | |
ATTGAGGTGAACACGGTCAC+AGG | - | chr3.1:43231253-43231272 | MS.gene72057:CDS | 50.0% | |
CAAGACTCTAGTGGTTAGGG+AGG | - | chr3.1:43231414-43231433 | MS.gene72057:CDS | 50.0% | |
CAAGCGACTGAAGAGAAGGT+AGG | - | chr3.1:43231178-43231197 | MS.gene72057:CDS | 50.0% | |
CAATCGTCCGGTCCGAAAAA+CGG | + | chr3.1:43230365-43230384 | None:intergenic | 50.0% | |
CACCTGCAGCTCCAATTAGA+TGG | - | chr3.1:43233500-43233519 | MS.gene72057:CDS | 50.0% | |
CTCCCTAACCACTAGAGTCT+TGG | + | chr3.1:43231416-43231435 | None:intergenic | 50.0% | |
GAAGCAAGCGACTGAAGAGA+AGG | - | chr3.1:43231174-43231193 | MS.gene72057:CDS | 50.0% | |
GCTAACCACTCTTGAAGTCC+AGG | - | chr3.1:43233564-43233583 | MS.gene72057:CDS | 50.0% | |
GGCCAAGACTCTAGTGGTTA+GGG | - | chr3.1:43231411-43231430 | MS.gene72057:CDS | 50.0% | |
GGGTTGAAGAATAGAGGGGT+TGG | - | chr3.1:43231658-43231677 | MS.gene72057:intron | 50.0% | |
GGTTAGGGAGGCAATGTTGA+AGG | - | chr3.1:43231426-43231445 | MS.gene72057:CDS | 50.0% | |
GGTTGAGGTGAAGACAGTCA+CGG | - | chr3.1:43231522-43231541 | MS.gene72057:CDS | 50.0% | |
GTGAAGGAAAAGAGAGGGGT+TGG | - | chr3.1:43230746-43230765 | MS.gene72057:intron | 50.0% | |
GTGAATATCCCTTAGGGGAC+AGG | - | chr3.1:43232506-43232525 | MS.gene72057:CDS | 50.0% | |
GTTGAGGTGAAGACAGTCAC+GGG | - | chr3.1:43231523-43231542 | MS.gene72057:CDS | 50.0% | |
TAGACGAGACGCTAGTGGTT+AGG | - | chr3.1:43231140-43231159 | MS.gene72057:CDS | 50.0% | |
TCATCCGGTTCAGATTGCTC+CGG | + | chr3.1:43230394-43230413 | None:intergenic | 50.0% | |
TCTAATTGGAGCTGCAGGTG+TGG | + | chr3.1:43233500-43233519 | None:intergenic | 50.0% | |
TGAAGACAGTCACGGGAGAA+AGG | - | chr3.1:43231530-43231549 | MS.gene72057:CDS | 50.0% | |
TGAAGTGGGGAAGAAGAGGA+AGG | - | chr3.1:43230661-43230680 | MS.gene72057:intron | 50.0% | |
TGGCCAAGACTCTAGTGGTT+AGG | - | chr3.1:43231410-43231429 | MS.gene72057:CDS | 50.0% | |
TGGTGTAGGTGCTTCAGGTA+TGG | - | chr3.1:43230787-43230806 | MS.gene72057:intron | 50.0% | |
TTTGCTTCCCTGTCCCCTAA+GGG | + | chr3.1:43232517-43232536 | None:intergenic | 50.0% | |
! | AGAAAGGTGTGGTGAGGAGT+TGG | - | chr3.1:43232642-43232661 | MS.gene72057:CDS | 50.0% |
! | CAATGGAGAAAGGTGTGGTG+AGG | - | chr3.1:43232636-43232655 | MS.gene72057:CDS | 50.0% |
! | GAAGGTGTAGTGGTGAAGTG+GGG | - | chr3.1:43230648-43230667 | MS.gene72057:intron | 50.0% |
! | GATATGCCACCTTCTGGTTG+GGG | + | chr3.1:43233435-43233454 | None:intergenic | 50.0% |
! | GGAAGGTGTAGTGGTGAAGT+GGG | - | chr3.1:43230647-43230666 | MS.gene72057:intron | 50.0% |
! | TGGAAGGTGTAGTGGTGAAG+TGG | - | chr3.1:43230646-43230665 | MS.gene72057:intron | 50.0% |
!! | GAATAGAGGGGTTGGTGATG+GGG | - | chr3.1:43231342-43231361 | MS.gene72057:CDS | 50.0% |
!! | GCACCGGTCCAATACCATTT+TGG | + | chr3.1:43233546-43233565 | None:intergenic | 50.0% |
!! | GGTGGTGGTGATTTTGAAGG+TGG | - | chr3.1:43230713-43230732 | MS.gene72057:intron | 50.0% |
!! | GGTTTTGGCCAAGACTCTAG+TGG | - | chr3.1:43231405-43231424 | MS.gene72057:CDS | 50.0% |
!! | GTGGAGAATGGTAATGGGCT+TGG | - | chr3.1:43231577-43231596 | MS.gene72057:intron | 50.0% |
!! | GTTGGTAATGGGGTTTCGTG+TGG | - | chr3.1:43230683-43230702 | MS.gene72057:intron | 50.0% |
!!! | GGTGGTGGTGGTGATTTTGA+AGG | - | chr3.1:43230710-43230729 | MS.gene72057:intron | 50.0% |
AACGGTTCGAAATTGGGCCG+CGG | + | chr3.1:43230347-43230366 | None:intergenic | 55.0% | |
AATGGGGTTTCGTGTGGTGG+TGG | - | chr3.1:43230689-43230708 | MS.gene72057:intron | 55.0% | |
AGCGGAGCTCATGAAGGTTG+TGG | - | chr3.1:43231558-43231577 | MS.gene72057:CDS | 55.0% | |
AGCGGCTGAAGAGAAGGTGA+GGG | - | chr3.1:43231450-43231469 | MS.gene72057:CDS | 55.0% | |
CAGGGAAGCAAAGCTGAAGG+AGG | - | chr3.1:43232525-43232544 | MS.gene72057:CDS | 55.0% | |
CCACTAGCGTCTCGTCTACA+CGG | + | chr3.1:43231138-43231157 | None:intergenic | 55.0% | |
CGAGCTCCGAGATAGTCATC+CGG | + | chr3.1:43230409-43230428 | None:intergenic | 55.0% | |
CTTTGCTTCCCTGTCCCCTA+AGG | + | chr3.1:43232518-43232537 | None:intergenic | 55.0% | |
GATGGGGAGGCTTGTGCTAT+TGG | - | chr3.1:43232778-43232797 | MS.gene72057:CDS | 55.0% | |
GCTGCAGTTGGGCACGAAAA+AGG | - | chr3.1:43231625-43231644 | MS.gene72057:intron | 55.0% | |
GCTGTTGCGGAACTGGATGT+TGG | - | chr3.1:43231697-43231716 | MS.gene72057:intron | 55.0% | |
GGAACCGGAGCAATCTGAAC+CGG | - | chr3.1:43230387-43230406 | MS.gene72057:CDS | 55.0% | |
GGACAGGGAAGCAAAGCTGA+AGG | - | chr3.1:43232522-43232541 | MS.gene72057:CDS | 55.0% | |
GGAGGCAATGTTGAAGGCAG+CGG | - | chr3.1:43231432-43231451 | MS.gene72057:CDS | 55.0% | |
GTGGGGAAGAAGAGGAAGGT+TGG | - | chr3.1:43230665-43230684 | MS.gene72057:intron | 55.0% | |
GTGGTGAAGTGGGGAAGAAG+AGG | - | chr3.1:43230657-43230676 | MS.gene72057:intron | 55.0% | |
TGAACACGGTCACAGGAGGA+AGG | - | chr3.1:43231260-43231279 | MS.gene72057:CDS | 55.0% | |
TGCTGCCTGGACTTCAAGAG+TGG | + | chr3.1:43233572-43233591 | None:intergenic | 55.0% | |
! | CACAGGAGGAAGGCATGGAA+AGG | - | chr3.1:43231270-43231289 | MS.gene72057:CDS | 55.0% |
! | CACTGGCCCGAAAGCCATTT+TGG | + | chr3.1:43233396-43233415 | None:intergenic | 55.0% |
! | TAGTGGGGATGTTGATGGGG+AGG | - | chr3.1:43232765-43232784 | MS.gene72057:CDS | 55.0% |
! | TTTTCGGACCGGACGATTGG+CGG | - | chr3.1:43230366-43230385 | MS.gene72057:CDS | 55.0% |
!! | CGTTTTTCGGACCGGACGAT+TGG | - | chr3.1:43230363-43230382 | MS.gene72057:CDS | 55.0% |
!! | GGTAATGGGGTTTCGTGTGG+TGG | - | chr3.1:43230686-43230705 | MS.gene72057:intron | 55.0% |
!! | TAGAGGGGTTGGTAATGGGG+AGG | - | chr3.1:43231669-43231688 | MS.gene72057:intron | 55.0% |
ACGGTCACAGGAGGAAGGCA+TGG | - | chr3.1:43231265-43231284 | MS.gene72057:CDS | 60.0% | |
CAACTGTCGCCCCAACCAGA+AGG | - | chr3.1:43233423-43233442 | MS.gene72057:CDS | 60.0% | |
CAGCGGCTGAAGAGAAGGTG+AGG | - | chr3.1:43231449-43231468 | MS.gene72057:CDS | 60.0% | |
CCGTGTAGACGAGACGCTAG+TGG | - | chr3.1:43231135-43231154 | MS.gene72057:CDS | 60.0% | |
GAAGGCAGCGGCTGAAGAGA+AGG | - | chr3.1:43231444-43231463 | MS.gene72057:CDS | 60.0% | |
GAGGTGAACACGGTCACAGG+AGG | - | chr3.1:43231256-43231275 | MS.gene72057:CDS | 60.0% | |
GCGTGAAGCGGAGCTCATGA+AGG | - | chr3.1:43231552-43231571 | MS.gene72057:CDS | 60.0% | |
! | CACGGGAGAAAGGCGTGAAG+CGG | - | chr3.1:43231540-43231559 | MS.gene72057:CDS | 60.0% |
! | GGCTTGTGCTGTTGCGGAAC+TGG | - | chr3.1:43231690-43231709 | MS.gene72057:intron | 60.0% |
! | TGGGGAGGCTTGTGCTGTTG+CGG | - | chr3.1:43231684-43231703 | MS.gene72057:intron | 60.0% |
!! | GTTTCGTGTGGTGGTGGTGG+TGG | - | chr3.1:43230695-43230714 | MS.gene72057:intron | 60.0% |
!! | TAGAGGGGTTGGTGATGGGG+AGG | - | chr3.1:43231345-43231364 | MS.gene72057:CDS | 60.0% |
CTCCGGTTCCGCCAATCGTC+CGG | + | chr3.1:43230377-43230396 | None:intergenic | 65.0% | |
CTGTCGCCCCAACCAGAAGG+TGG | - | chr3.1:43233426-43233445 | MS.gene72057:CDS | 65.0% | |
GACCGGACGATTGGCGGAAC+CGG | - | chr3.1:43230372-43230391 | MS.gene72057:CDS | 65.0% | |
!! | GGGGTTTCGTGTGGTGGTGG+TGG | - | chr3.1:43230692-43230711 | MS.gene72057:intron | 65.0% |
!! | TCGTGTGGTGGTGGTGGTGG+TGG | - | chr3.1:43230698-43230717 | MS.gene72057:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 43230338 | 43233654 | 43230338 | ID=MS.gene72057 |
chr3.1 | mRNA | 43230338 | 43233654 | 43230338 | ID=MS.gene72057.t1;Parent=MS.gene72057 |
chr3.1 | exon | 43233189 | 43233654 | 43233189 | ID=MS.gene72057.t1.exon1;Parent=MS.gene72057.t1 |
chr3.1 | CDS | 43233189 | 43233654 | 43233189 | ID=cds.MS.gene72057.t1;Parent=MS.gene72057.t1 |
chr3.1 | exon | 43232247 | 43232870 | 43232247 | ID=MS.gene72057.t1.exon2;Parent=MS.gene72057.t1 |
chr3.1 | CDS | 43232247 | 43232870 | 43232247 | ID=cds.MS.gene72057.t1;Parent=MS.gene72057.t1 |
chr3.1 | exon | 43231103 | 43231582 | 43231103 | ID=MS.gene72057.t1.exon3;Parent=MS.gene72057.t1 |
chr3.1 | CDS | 43231103 | 43231582 | 43231103 | ID=cds.MS.gene72057.t1;Parent=MS.gene72057.t1 |
chr3.1 | exon | 43230338 | 43230483 | 43230338 | ID=MS.gene72057.t1.exon4;Parent=MS.gene72057.t1 |
chr3.1 | CDS | 43230338 | 43230483 | 43230338 | ID=cds.MS.gene72057.t1;Parent=MS.gene72057.t1 |
Gene Sequence |
Protein sequence |