Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72120.t1 | XP_013447054.1 | 98 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 2.20E-256 | 894.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72120.t1 | Q9FN67 | 62.9 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 9.8e-157 | 554.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72120.t1 | A0A072TV73 | 98.0 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 1.6e-256 | 894.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052083 | MS.gene72120 | 0.875563 | 2.79E-68 | -1.69E-46 |
| MS.gene053625 | MS.gene72120 | 0.806063 | 9.87E-50 | -1.69E-46 |
| MS.gene059691 | MS.gene72120 | 0.805029 | 1.63E-49 | -1.69E-46 |
| MS.gene059694 | MS.gene72120 | 0.81024 | 1.27E-50 | -1.69E-46 |
| MS.gene059697 | MS.gene72120 | 0.808119 | 3.62E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72120.t1 | MTR_8g098485 | 98.026 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 0.0 | 920 |
| MS.gene72120.t1 | MTR_7g088170 | 30.901 | 466 | 280 | 13 | 17 | 452 | 16 | 469 | 3.87e-65 | 217 |
| MS.gene72120.t1 | MTR_4g130970 | 23.222 | 478 | 276 | 18 | 20 | 453 | 8 | 438 | 6.75e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72120.t1 | AT5G41330 | 62.889 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 0.0 | 567 |
| MS.gene72120.t1 | AT5G41330 | 62.889 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 0.0 | 567 |
| MS.gene72120.t1 | AT3G09030 | 32.222 | 450 | 282 | 12 | 20 | 453 | 10 | 452 | 2.22e-64 | 214 |
| MS.gene72120.t1 | AT4G30940 | 28.662 | 314 | 190 | 12 | 20 | 316 | 8 | 304 | 1.58e-19 | 90.9 |
| MS.gene72120.t1 | AT2G24240 | 25.383 | 457 | 287 | 18 | 20 | 451 | 8 | 435 | 3.23e-19 | 90.1 |
Find 115 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGTCCTTCTGGTGTTTC+TGG | 0.144577 | 4.2:+6226470 | MS.gene72120:CDS |
| AGGAGAGTCTCTTCCGTTTA+AGG | 0.149332 | 4.2:-6225973 | None:intergenic |
| CATAATCTGTTGATGGCTTC+TGG | 0.224547 | 4.2:+6226440 | MS.gene72120:CDS |
| CGGGTTACAGATTCTTGATT+TGG | 0.229474 | 4.2:+6226169 | MS.gene72120:CDS |
| GCGTTAGAATTGTTGATTTC+CGG | 0.235110 | 4.2:-6226076 | None:intergenic |
| AACAATTCTAACGCACTTTA+CGG | 0.238094 | 4.2:+6226085 | MS.gene72120:CDS |
| AGGAGGAGAGAGAAAATTTC+AGG | 0.240586 | 4.2:-6225786 | None:intergenic |
| TTCGCTCTGGCAACGTTGTT+TGG | 0.244172 | 4.2:+6226513 | MS.gene72120:CDS |
| ACGTGAAGGATACATTAAAT+TGG | 0.258798 | 4.2:+6226201 | MS.gene72120:CDS |
| TTTCTGGTAATGTTAGGTTA+TGG | 0.263715 | 4.2:+6226486 | MS.gene72120:CDS |
| TTCAAAATGCCACCCTTTGC+AGG | 0.268500 | 4.2:+6225594 | None:intergenic |
| GATGGGGAGGGTGCAAGATA+TGG | 0.270075 | 4.2:+6226841 | MS.gene72120:CDS |
| TGTAGCAGTTTCTGATTCTT+TGG | 0.273093 | 4.2:+6226568 | MS.gene72120:CDS |
| ATCCACTGCAGTTTCGTTGC+TGG | 0.283895 | 4.2:-6226410 | None:intergenic |
| CTGGTGTTTCTGGTAATGTT+AGG | 0.286245 | 4.2:+6226480 | MS.gene72120:CDS |
| TAATGGGTTCTTCTAATAAC+AGG | 0.298676 | 4.2:+6226801 | MS.gene72120:CDS |
| TTTAAAGTTGGTGTGAATTC+TGG | 0.298812 | 4.2:+6226599 | MS.gene72120:CDS |
| GGGTCCCACAGTGGTCCTTC+TGG | 0.309924 | 4.2:+6226461 | MS.gene72120:CDS |
| AAGATCACAAATTTGGCATT+TGG | 0.317695 | 4.2:+6226872 | MS.gene72120:CDS |
| TTCTGGTAATGTTAGGTTAT+GGG | 0.332159 | 4.2:+6226487 | MS.gene72120:CDS |
| AAGTTTGGCAGAGTTCTTCT+AGG | 0.335393 | 4.2:+6226939 | MS.gene72120:CDS |
| ATCATAAACAACAATAGAAT+TGG | 0.345014 | 4.2:-6226315 | None:intergenic |
| AGGTGCTAAGATCACAAATT+TGG | 0.365344 | 4.2:+6226865 | MS.gene72120:CDS |
| GGCTTTGGAAGGAAGATTAC+CGG | 0.366750 | 4.2:-6225823 | None:intergenic |
| TCGCTCTGGCAACGTTGTTT+GGG | 0.369820 | 4.2:+6226514 | MS.gene72120:CDS |
| GTCTTGAAGATCAAAGGATT+TGG | 0.378770 | 4.2:-6225844 | None:intergenic |
| TTGTGAGCAATCTCCGTAAC+AGG | 0.383544 | 4.2:-6226353 | None:intergenic |
| TGGGAAAACGTAACGAAATC+TGG | 0.387225 | 4.2:+6226221 | MS.gene72120:CDS |
| ATAATCTGTTGATGGCTTCT+GGG | 0.388853 | 4.2:+6226441 | MS.gene72120:CDS |
| CGTGAAGGATACATTAAATT+GGG | 0.393397 | 4.2:+6226202 | MS.gene72120:CDS |
| TTGTGAGATTGTTGAGAAGA+AGG | 0.396912 | 4.2:-6225727 | None:intergenic |
| TCACTTCAATTACCCTTAAA+CGG | 0.399134 | 4.2:+6225960 | MS.gene72120:CDS |
| AAGATCAAAGGATTTGGCTT+TGG | 0.400270 | 4.2:-6225838 | None:intergenic |
| ATTGCTCACAATGAAATCTA+TGG | 0.400951 | 4.2:+6226365 | MS.gene72120:CDS |
| GGAGAGTCTCTTCCGTTTAA+GGG | 0.401423 | 4.2:-6225972 | None:intergenic |
| CAGATTCTTGATTTGGAAAA+CGG | 0.403375 | 4.2:+6226176 | MS.gene72120:CDS |
| CCCTTTGCAGGTTCTCATCC+CGG | 0.417766 | 4.2:+6225606 | MS.gene72120:CDS |
| GCTATGGTCAGAGATTATAA+TGG | 0.421356 | 4.2:+6226784 | MS.gene72120:CDS |
| TGAAAGTCATAATCTGTTGA+TGG | 0.423697 | 4.2:+6226433 | MS.gene72120:CDS |
| GCAAGATTACAACCTTTGAT+TGG | 0.424151 | 4.2:+6226045 | MS.gene72120:CDS |
| ATTTGCAATGTGTTGAAGTT+TGG | 0.431202 | 4.2:+6226924 | MS.gene72120:CDS |
| GCATAGTTTGAGACCTGTTA+CGG | 0.441604 | 4.2:+6226340 | MS.gene72120:CDS |
| TAGGATGTTCTTAACTAGAA+AGG | 0.445860 | 4.2:+6226901 | MS.gene72120:CDS |
| GCCGGAGCTAATGATTTCTC+CGG | 0.449877 | 4.2:+6226149 | MS.gene72120:CDS |
| ATGGGGAGGGTGCAAGATAT+GGG | 0.456498 | 4.2:+6226842 | MS.gene72120:CDS |
| AGAATTTGGATTCAATGATA+AGG | 0.464890 | 4.2:-6225866 | None:intergenic |
| CTATGGTCAGAGATTATAAT+GGG | 0.475345 | 4.2:+6226785 | MS.gene72120:CDS |
| TGGAATCGCTGAATCGATAT+CGG | 0.479074 | 4.2:-6226390 | None:intergenic |
| AAACAAACCCTAACCTCAGC+TGG | 0.481824 | 4.2:+6225696 | MS.gene72120:CDS |
| ATCATTGAATCCAAATTCTA+CGG | 0.483688 | 4.2:+6225870 | MS.gene72120:CDS |
| GGTTCAACCGTTCAAGCGAT+TGG | 0.484879 | 4.2:+6226242 | MS.gene72120:CDS |
| TTGTTTAGGTGATAAGAGAA+AGG | 0.487551 | 4.2:+6226676 | MS.gene72120:CDS |
| TCGCCGTCGTTAGCCGCCGC+CGG | 0.489018 | 4.2:+6226131 | MS.gene72120:CDS |
| ATCACAAATTTGGCATTTGG+AGG | 0.491735 | 4.2:+6226875 | MS.gene72120:CDS |
| TTGGATGCTATGTTTAAAGT+TGG | 0.491875 | 4.2:+6226587 | MS.gene72120:CDS |
| AAGCTAACAAACATGTTCTC+AGG | 0.493602 | 4.2:-6226272 | None:intergenic |
| CAAGAAGAATTTGATGGGGA+GGG | 0.495473 | 4.2:+6226829 | MS.gene72120:CDS |
| TTGAAAGGTTCAAATTGAGA+AGG | 0.496364 | 4.2:-6225927 | None:intergenic |
| AGGTTATGGGATGTTCGCTC+TGG | 0.496629 | 4.2:+6226500 | MS.gene72120:CDS |
| CCTTTGATTGGTCACTTCGC+CGG | 0.499137 | 4.2:+6226057 | MS.gene72120:CDS |
| TGAAAGGTTCAAATTGAGAA+GGG | 0.502836 | 4.2:-6225926 | None:intergenic |
| GGGGTGGTTGCAACGGTGGA+AGG | 0.505309 | 4.2:-6225993 | None:intergenic |
| CTCCTCTCTCTCCTCCGCAC+CGG | 0.507223 | 4.2:+6225804 | MS.gene72120:CDS |
| ATTTGGCATTTGGAGGAAGT+AGG | 0.517181 | 4.2:+6226882 | MS.gene72120:CDS |
| TCAAAGGATTTGGCTTTGGA+AGG | 0.521892 | 4.2:-6225834 | None:intergenic |
| TACCGGTGCGGAGGAGAGAG+AGG | 0.527787 | 4.2:-6225806 | None:intergenic |
| ACCGTAAGGGGTGGTTGCAA+CGG | 0.528739 | 4.2:-6226000 | None:intergenic |
| CCCGGAGAAATCATTAGCTC+CGG | 0.530387 | 4.2:-6226150 | None:intergenic |
| GGAGGAGAGAGAAAATTTCA+GGG | 0.531374 | 4.2:-6225785 | None:intergenic |
| GAAAGGTGTGTAGGGTGAAG+AGG | 0.538108 | 4.2:-6225751 | None:intergenic |
| ACCGTTGCAACCACCCCTTA+CGG | 0.539975 | 4.2:+6225999 | MS.gene72120:CDS |
| GATAAGGTCTTGAAGATCAA+AGG | 0.542021 | 4.2:-6225850 | None:intergenic |
| TTGCACTAAGGGTGGTGATG+TGG | 0.542476 | 4.2:+6226760 | MS.gene72120:CDS |
| TCAAGAAGAATTTGATGGGG+AGG | 0.543104 | 4.2:+6226828 | MS.gene72120:CDS |
| TGCTGCCGTGTGCGACGTGG+AGG | 0.546307 | 4.2:-6226025 | None:intergenic |
| CCGGAGCTAATGATTTCTCC+GGG | 0.550287 | 4.2:+6226150 | MS.gene72120:CDS |
| GTCTGATCTGAAAACACCAC+CGG | 0.555052 | 4.2:-6225625 | None:intergenic |
| GACGTGGAGGGAACCGTAAG+GGG | 0.556034 | 4.2:-6226012 | None:intergenic |
| TCTGTCGATGAAAGGTGTGT+AGG | 0.558071 | 4.2:-6225760 | None:intergenic |
| AGTTTGGCAGAGTTCTTCTA+GGG | 0.559490 | 4.2:+6226940 | MS.gene72120:CDS |
| CGACGTGGAGGGAACCGTAA+GGG | 0.559572 | 4.2:-6226013 | None:intergenic |
| CTGTCGATGAAAGGTGTGTA+GGG | 0.561965 | 4.2:-6225759 | None:intergenic |
| CCGGCGAAGTGACCAATCAA+AGG | 0.568312 | 4.2:-6226057 | None:intergenic |
| GCGACGTGGAGGGAACCGTA+AGG | 0.579972 | 4.2:-6226014 | None:intergenic |
| TCAGGGTCTCTGTCGATGAA+AGG | 0.581587 | 4.2:-6225768 | None:intergenic |
| GAAATCATTAGCTCCGGCGG+CGG | 0.582033 | 4.2:-6226144 | None:intergenic |
| GGTTGCAAAATTGAAACACA+AGG | 0.582683 | 4.2:+6226725 | MS.gene72120:CDS |
| TGAAGAACCAATCGCTTGAA+CGG | 0.585234 | 4.2:-6226249 | None:intergenic |
| CAAATCAAGAATCTGTAACC+CGG | 0.585490 | 4.2:-6226168 | None:intergenic |
| AACATAGTCACAATCGACGT+TGG | 0.585850 | 4.2:+6225651 | MS.gene72120:CDS |
| GCTCCGGCGGCGGCTAACGA+CGG | 0.587441 | 4.2:-6226134 | None:intergenic |
| CCGGGATGAGAACCTGCAAA+GGG | 0.593697 | 4.2:-6225606 | None:intergenic |
| TTTGGAAAACGGTTACGTGA+AGG | 0.595270 | 4.2:+6226187 | MS.gene72120:CDS |
| GGTTCCCTCCACGTCGCACA+CGG | 0.603417 | 4.2:+6226020 | MS.gene72120:CDS |
| CGGTGCGGAGGAGAGAGAGG+AGG | 0.605383 | 4.2:-6225803 | None:intergenic |
| ATAGTCACAATCGACGTTGG+AGG | 0.605832 | 4.2:+6225654 | MS.gene72120:CDS |
| GTTGCAAAATTGAAACACAA+GGG | 0.608708 | 4.2:+6226726 | MS.gene72120:CDS |
| ACCGGGATGAGAACCTGCAA+AGG | 0.610342 | 4.2:-6225607 | None:intergenic |
| GCTGCCGTGTGCGACGTGGA+GGG | 0.616967 | 4.2:-6226024 | None:intergenic |
| GTAAGGGGTGGTTGCAACGG+TGG | 0.625552 | 4.2:-6225997 | None:intergenic |
| TTCCAGCAACGAAACTGCAG+TGG | 0.625740 | 4.2:+6226408 | MS.gene72120:CDS |
| AACACCAGAAGGACCACTGT+GGG | 0.627063 | 4.2:-6226465 | None:intergenic |
| AAGGAAGATTACCGGTGCGG+AGG | 0.628049 | 4.2:-6225815 | None:intergenic |
| AGGGTGGTGATGTGGAGCTA+TGG | 0.628784 | 4.2:+6226768 | MS.gene72120:CDS |
| GGAGAAATCATTAGCTCCGG+CGG | 0.638372 | 4.2:-6226147 | None:intergenic |
| TCTTGCTGCCGTGTGCGACG+TGG | 0.646818 | 4.2:-6226028 | None:intergenic |
| ATGGCTTCTGGGTCCCACAG+TGG | 0.650573 | 4.2:+6226452 | MS.gene72120:CDS |
| GTGGAGGGAACCGTAAGGGG+TGG | 0.652569 | 4.2:-6226009 | None:intergenic |
| GGATGAGAACCTGCAAAGGG+TGG | 0.660246 | 4.2:-6225603 | None:intergenic |
| TGGAAGGAAGATTACCGGTG+CGG | 0.667763 | 4.2:-6225818 | None:intergenic |
| TTTGCAGGTTCTCATCCCGG+TGG | 0.693634 | 4.2:+6225609 | MS.gene72120:CDS |
| ACATTACCAGAAACACCAGA+AGG | 0.701677 | 4.2:-6226476 | None:intergenic |
| GGGAGGGTGCAAGATATGGG+AGG | 0.711495 | 4.2:+6226845 | MS.gene72120:CDS |
| TCTGATCTGAAAACACCACC+GGG | 0.715720 | 4.2:-6225624 | None:intergenic |
| AAACACCAGAAGGACCACTG+TGG | 0.737767 | 4.2:-6226466 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATAAACAACAATAGAAT+TGG | - | chr4.2:6226318-6226337 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGAAGAATTTGAT+GGG | + | chr4.2:6226824-6226843 | MS.gene72120:CDS | 20.0% |
| ! | AGAATTTGGATTCAATGATA+AGG | - | chr4.2:6225869-6225888 | None:intergenic | 25.0% |
| ! | ATCATTGAATCCAAATTCTA+CGG | + | chr4.2:6225870-6225889 | MS.gene72120:CDS | 25.0% |
| !! | TTTTGAATGGGAAAAAAGAA+GGG | + | chr4.2:6226699-6226718 | MS.gene72120:CDS | 25.0% |
| !!! | AATCAAGTTTTTTGCACTAA+GGG | + | chr4.2:6226749-6226768 | MS.gene72120:CDS | 25.0% |
| !!! | ATAAGAGAAAGGTTTTGAAT+GGG | + | chr4.2:6226687-6226706 | MS.gene72120:CDS | 25.0% |
| !!! | GATTTTCAAGAAGAATTTGA+TGG | + | chr4.2:6226823-6226842 | MS.gene72120:CDS | 25.0% |
| !!! | GTTTTGTTGTTTGAAACAAT+TGG | - | chr4.2:6225680-6225699 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAAGAATTTGATG+GGG | + | chr4.2:6226825-6226844 | MS.gene72120:CDS | 25.0% |
| AACAATTCTAACGCACTTTA+CGG | + | chr4.2:6226085-6226104 | MS.gene72120:CDS | 30.0% | |
| AAGATCACAAATTTGGCATT+TGG | + | chr4.2:6226872-6226891 | MS.gene72120:CDS | 30.0% | |
| ACGTGAAGGATACATTAAAT+TGG | + | chr4.2:6226201-6226220 | MS.gene72120:CDS | 30.0% | |
| ATTGCTCACAATGAAATCTA+TGG | + | chr4.2:6226365-6226384 | MS.gene72120:CDS | 30.0% | |
| ATTTGCAATGTGTTGAAGTT+TGG | + | chr4.2:6226924-6226943 | MS.gene72120:CDS | 30.0% | |
| CGTGAAGGATACATTAAATT+GGG | + | chr4.2:6226202-6226221 | MS.gene72120:CDS | 30.0% | |
| CTATGGTCAGAGATTATAAT+GGG | + | chr4.2:6226785-6226804 | MS.gene72120:CDS | 30.0% | |
| GTTGCAAAATTGAAACACAA+GGG | + | chr4.2:6226726-6226745 | MS.gene72120:CDS | 30.0% | |
| TAGGATGTTCTTAACTAGAA+AGG | + | chr4.2:6226901-6226920 | MS.gene72120:CDS | 30.0% | |
| TCACTTCAATTACCCTTAAA+CGG | + | chr4.2:6225960-6225979 | MS.gene72120:CDS | 30.0% | |
| TGAAAGGTTCAAATTGAGAA+GGG | - | chr4.2:6225929-6225948 | None:intergenic | 30.0% | |
| TGAAAGTCATAATCTGTTGA+TGG | + | chr4.2:6226433-6226452 | MS.gene72120:CDS | 30.0% | |
| TTGAAAGGTTCAAATTGAGA+AGG | - | chr4.2:6225930-6225949 | None:intergenic | 30.0% | |
| TTGTTTAGGTGATAAGAGAA+AGG | + | chr4.2:6226676-6226695 | MS.gene72120:CDS | 30.0% | |
| ! | AAAAATGCATGGGTTTGTTT+AGG | + | chr4.2:6226662-6226681 | MS.gene72120:CDS | 30.0% |
| ! | ATTGTTGAGAAGAAGGTTTT+TGG | - | chr4.2:6225723-6225742 | None:intergenic | 30.0% |
| ! | TTCTGGTAATGTTAGGTTAT+GGG | + | chr4.2:6226487-6226506 | MS.gene72120:CDS | 30.0% |
| ! | TTGGATGCTATGTTTAAAGT+TGG | + | chr4.2:6226587-6226606 | MS.gene72120:CDS | 30.0% |
| ! | TTTCTGGTAATGTTAGGTTA+TGG | + | chr4.2:6226486-6226505 | MS.gene72120:CDS | 30.0% |
| !! | CAGATTCTTGATTTGGAAAA+CGG | + | chr4.2:6226176-6226195 | MS.gene72120:CDS | 30.0% |
| !! | GTTTTGAATGGGAAAAAAGA+AGG | + | chr4.2:6226698-6226717 | MS.gene72120:CDS | 30.0% |
| !! | TAATGGGTTCTTCTAATAAC+AGG | + | chr4.2:6226801-6226820 | MS.gene72120:CDS | 30.0% |
| !! | TTTAAAGTTGGTGTGAATTC+TGG | + | chr4.2:6226599-6226618 | MS.gene72120:CDS | 30.0% |
| !!! | AGTGAGTTTTGAAGATTGAA+AGG | - | chr4.2:6225945-6225964 | None:intergenic | 30.0% |
| !!! | GAATCAAGTTTTTTGCACTA+AGG | + | chr4.2:6226748-6226767 | MS.gene72120:CDS | 30.0% |
| !!! | GATAAGAGAAAGGTTTTGAA+TGG | + | chr4.2:6226686-6226705 | MS.gene72120:CDS | 30.0% |
| AAGCTAACAAACATGTTCTC+AGG | - | chr4.2:6226275-6226294 | None:intergenic | 35.0% | |
| AATGGGAAAAAAGAAGGGTT+TGG | + | chr4.2:6226704-6226723 | MS.gene72120:CDS | 35.0% | |
| AGGTGCTAAGATCACAAATT+TGG | + | chr4.2:6226865-6226884 | MS.gene72120:CDS | 35.0% | |
| ATCACAAATTTGGCATTTGG+AGG | + | chr4.2:6226875-6226894 | MS.gene72120:CDS | 35.0% | |
| CAAATCAAGAATCTGTAACC+CGG | - | chr4.2:6226171-6226190 | None:intergenic | 35.0% | |
| GATAAGGTCTTGAAGATCAA+AGG | - | chr4.2:6225853-6225872 | None:intergenic | 35.0% | |
| GCAAGATTACAACCTTTGAT+TGG | + | chr4.2:6226045-6226064 | MS.gene72120:CDS | 35.0% | |
| GCTATGGTCAGAGATTATAA+TGG | + | chr4.2:6226784-6226803 | MS.gene72120:CDS | 35.0% | |
| GGTTGCAAAATTGAAACACA+AGG | + | chr4.2:6226725-6226744 | MS.gene72120:CDS | 35.0% | |
| GTCTTGAAGATCAAAGGATT+TGG | - | chr4.2:6225847-6225866 | None:intergenic | 35.0% | |
| TGTAGCAGTTTCTGATTCTT+TGG | + | chr4.2:6226568-6226587 | MS.gene72120:CDS | 35.0% | |
| TTGTGAGATTGTTGAGAAGA+AGG | - | chr4.2:6225730-6225749 | None:intergenic | 35.0% | |
| ! | AAGATCAAAGGATTTGGCTT+TGG | - | chr4.2:6225841-6225860 | None:intergenic | 35.0% |
| ! | ATTTTCGATGCCGTAGAATT+TGG | - | chr4.2:6225883-6225902 | None:intergenic | 35.0% |
| !! | ATAATCTGTTGATGGCTTCT+GGG | + | chr4.2:6226441-6226460 | MS.gene72120:CDS | 35.0% |
| !! | GAGTTCTGAGAAAAATGCAT+GGG | + | chr4.2:6226652-6226671 | MS.gene72120:CDS | 35.0% |
| !! | GCGTTAGAATTGTTGATTTC+CGG | - | chr4.2:6226079-6226098 | None:intergenic | 35.0% |
| !! | TGAGTTCTGAGAAAAATGCA+TGG | + | chr4.2:6226651-6226670 | MS.gene72120:CDS | 35.0% |
| !! | TTCTGGTGAAGCGTTTTATA+TGG | + | chr4.2:6226616-6226635 | MS.gene72120:CDS | 35.0% |
| AACATAGTCACAATCGACGT+TGG | + | chr4.2:6225651-6225670 | MS.gene72120:CDS | 40.0% | |
| AAGTTTGGCAGAGTTCTTCT+AGG | + | chr4.2:6226939-6226958 | MS.gene72120:CDS | 40.0% | |
| ACATTACCAGAAACACCAGA+AGG | - | chr4.2:6226479-6226498 | None:intergenic | 40.0% | |
| AGGAGGAGAGAGAAAATTTC+AGG | - | chr4.2:6225789-6225808 | None:intergenic | 40.0% | |
| AGTTTGGCAGAGTTCTTCTA+GGG | + | chr4.2:6226940-6226959 | MS.gene72120:CDS | 40.0% | |
| ATTTGGCATTTGGAGGAAGT+AGG | + | chr4.2:6226882-6226901 | MS.gene72120:CDS | 40.0% | |
| CAAGAAGAATTTGATGGGGA+GGG | + | chr4.2:6226829-6226848 | MS.gene72120:CDS | 40.0% | |
| CGGGTTACAGATTCTTGATT+TGG | + | chr4.2:6226169-6226188 | MS.gene72120:CDS | 40.0% | |
| GGAGGAGAGAGAAAATTTCA+GGG | - | chr4.2:6225788-6225807 | None:intergenic | 40.0% | |
| TCAAGAAGAATTTGATGGGG+AGG | + | chr4.2:6226828-6226847 | MS.gene72120:CDS | 40.0% | |
| TGAAGAACCAATCGCTTGAA+CGG | - | chr4.2:6226252-6226271 | None:intergenic | 40.0% | |
| TGGAATCGCTGAATCGATAT+CGG | - | chr4.2:6226393-6226412 | None:intergenic | 40.0% | |
| TGGGAAAACGTAACGAAATC+TGG | + | chr4.2:6226221-6226240 | MS.gene72120:CDS | 40.0% | |
| TTTGGAAAACGGTTACGTGA+AGG | + | chr4.2:6226187-6226206 | MS.gene72120:CDS | 40.0% | |
| ! | GCATAGTTTGAGACCTGTTA+CGG | + | chr4.2:6226340-6226359 | MS.gene72120:CDS | 40.0% |
| !! | CATAATCTGTTGATGGCTTC+TGG | + | chr4.2:6226440-6226459 | MS.gene72120:CDS | 40.0% |
| !! | CTGGTGTTTCTGGTAATGTT+AGG | + | chr4.2:6226480-6226499 | MS.gene72120:CDS | 40.0% |
| !! | TCAAAGGATTTGGCTTTGGA+AGG | - | chr4.2:6225837-6225856 | None:intergenic | 40.0% |
| !!! | CAAGTTTTTTGCACTAAGGG+TGG | + | chr4.2:6226752-6226771 | MS.gene72120:CDS | 40.0% |
| AAACAAACCCTAACCTCAGC+TGG | + | chr4.2:6225696-6225715 | MS.gene72120:CDS | 45.0% | |
| AGGAGAGTCTCTTCCGTTTA+AGG | - | chr4.2:6225976-6225995 | None:intergenic | 45.0% | |
| ATAGTCACAATCGACGTTGG+AGG | + | chr4.2:6225654-6225673 | MS.gene72120:CDS | 45.0% | |
| GGAGAGTCTCTTCCGTTTAA+GGG | - | chr4.2:6225975-6225994 | None:intergenic | 45.0% | |
| GTCTGATCTGAAAACACCAC+CGG | - | chr4.2:6225628-6225647 | None:intergenic | 45.0% | |
| TCTGATCTGAAAACACCACC+GGG | - | chr4.2:6225627-6225646 | None:intergenic | 45.0% | |
| TTGTGAGCAATCTCCGTAAC+AGG | - | chr4.2:6226356-6226375 | None:intergenic | 45.0% | |
| ! | CTGTCGATGAAAGGTGTGTA+GGG | - | chr4.2:6225762-6225781 | None:intergenic | 45.0% |
| ! | TCTGTCGATGAAAGGTGTGT+AGG | - | chr4.2:6225763-6225782 | None:intergenic | 45.0% |
| ! | TTTTGGTCCAGCTGAGGTTA+GGG | - | chr4.2:6225706-6225725 | None:intergenic | 45.0% |
| !! | GGCTTTGGAAGGAAGATTAC+CGG | - | chr4.2:6225826-6225845 | None:intergenic | 45.0% |
| !! | TTTTTGGTCCAGCTGAGGTT+AGG | - | chr4.2:6225707-6225726 | None:intergenic | 45.0% |
| AAACACCAGAAGGACCACTG+TGG | - | chr4.2:6226469-6226488 | None:intergenic | 50.0% | |
| AACACCAGAAGGACCACTGT+GGG | - | chr4.2:6226468-6226487 | None:intergenic | 50.0% | |
| AGGTTATGGGATGTTCGCTC+TGG | + | chr4.2:6226500-6226519 | MS.gene72120:CDS | 50.0% | |
| AGTGGTCCTTCTGGTGTTTC+TGG | + | chr4.2:6226470-6226489 | MS.gene72120:CDS | 50.0% | |
| ATCCACTGCAGTTTCGTTGC+TGG | - | chr4.2:6226413-6226432 | None:intergenic | 50.0% | |
| CCCGGAGAAATCATTAGCTC+CGG | - | chr4.2:6226153-6226172 | None:intergenic | 50.0% | |
| CCGGAGCTAATGATTTCTCC+GGG | + | chr4.2:6226150-6226169 | MS.gene72120:CDS | 50.0% | |
| GCCGGAGCTAATGATTTCTC+CGG | + | chr4.2:6226149-6226168 | MS.gene72120:CDS | 50.0% | |
| GGAGAAATCATTAGCTCCGG+CGG | - | chr4.2:6226150-6226169 | None:intergenic | 50.0% | |
| GGTTCAACCGTTCAAGCGAT+TGG | + | chr4.2:6226242-6226261 | MS.gene72120:CDS | 50.0% | |
| TCAGGGTCTCTGTCGATGAA+AGG | - | chr4.2:6225771-6225790 | None:intergenic | 50.0% | |
| TCGCTCTGGCAACGTTGTTT+GGG | + | chr4.2:6226514-6226533 | MS.gene72120:CDS | 50.0% | |
| TGGAAGGAAGATTACCGGTG+CGG | - | chr4.2:6225821-6225840 | None:intergenic | 50.0% | |
| TTCCAGCAACGAAACTGCAG+TGG | + | chr4.2:6226408-6226427 | MS.gene72120:CDS | 50.0% | |
| TTCGCTCTGGCAACGTTGTT+TGG | + | chr4.2:6226513-6226532 | MS.gene72120:CDS | 50.0% | |
| ! | ATGGGGAGGGTGCAAGATAT+GGG | + | chr4.2:6226842-6226861 | MS.gene72120:CDS | 50.0% |
| ! | CCTTTGATTGGTCACTTCGC+CGG | + | chr4.2:6226057-6226076 | MS.gene72120:CDS | 50.0% |
| ! | GAAAGGTGTGTAGGGTGAAG+AGG | - | chr4.2:6225754-6225773 | None:intergenic | 50.0% |
| ! | TTGCACTAAGGGTGGTGATG+TGG | + | chr4.2:6226760-6226779 | MS.gene72120:CDS | 50.0% |
| !!! | GAAGGTTTTTGGTCCAGCTG+AGG | - | chr4.2:6225712-6225731 | None:intergenic | 50.0% |
| AAGGAAGATTACCGGTGCGG+AGG | - | chr4.2:6225818-6225837 | None:intergenic | 55.0% | |
| ACCGGGATGAGAACCTGCAA+AGG | - | chr4.2:6225610-6225629 | None:intergenic | 55.0% | |
| ACCGTAAGGGGTGGTTGCAA+CGG | - | chr4.2:6226003-6226022 | None:intergenic | 55.0% | |
| ACCGTTGCAACCACCCCTTA+CGG | + | chr4.2:6225999-6226018 | MS.gene72120:CDS | 55.0% | |
| CCCTTTGCAGGTTCTCATCC+CGG | + | chr4.2:6225606-6225625 | MS.gene72120:CDS | 55.0% | |
| CCGGCGAAGTGACCAATCAA+AGG | - | chr4.2:6226060-6226079 | None:intergenic | 55.0% | |
| CCGGGATGAGAACCTGCAAA+GGG | - | chr4.2:6225609-6225628 | None:intergenic | 55.0% | |
| GAAATCATTAGCTCCGGCGG+CGG | - | chr4.2:6226147-6226166 | None:intergenic | 55.0% | |
| GGATGAGAACCTGCAAAGGG+TGG | - | chr4.2:6225606-6225625 | None:intergenic | 55.0% | |
| TTTGCAGGTTCTCATCCCGG+TGG | + | chr4.2:6225609-6225628 | MS.gene72120:CDS | 55.0% | |
| ! | AGGGTGGTGATGTGGAGCTA+TGG | + | chr4.2:6226768-6226787 | MS.gene72120:CDS | 55.0% |
| ! | GATGGGGAGGGTGCAAGATA+TGG | + | chr4.2:6226841-6226860 | MS.gene72120:CDS | 55.0% |
| ATGGCTTCTGGGTCCCACAG+TGG | + | chr4.2:6226452-6226471 | MS.gene72120:CDS | 60.0% | |
| CGACGTGGAGGGAACCGTAA+GGG | - | chr4.2:6226016-6226035 | None:intergenic | 60.0% | |
| GACGTGGAGGGAACCGTAAG+GGG | - | chr4.2:6226015-6226034 | None:intergenic | 60.0% | |
| GTAAGGGGTGGTTGCAACGG+TGG | - | chr4.2:6226000-6226019 | None:intergenic | 60.0% | |
| ! | GGGAGGGTGCAAGATATGGG+AGG | + | chr4.2:6226845-6226864 | MS.gene72120:CDS | 60.0% |
| CTCCTCTCTCTCCTCCGCAC+CGG | + | chr4.2:6225804-6225823 | MS.gene72120:CDS | 65.0% | |
| GCGACGTGGAGGGAACCGTA+AGG | - | chr4.2:6226017-6226036 | None:intergenic | 65.0% | |
| GGGGTGGTTGCAACGGTGGA+AGG | - | chr4.2:6225996-6226015 | None:intergenic | 65.0% | |
| GGGTCCCACAGTGGTCCTTC+TGG | + | chr4.2:6226461-6226480 | MS.gene72120:CDS | 65.0% | |
| GGTTCCCTCCACGTCGCACA+CGG | + | chr4.2:6226020-6226039 | MS.gene72120:CDS | 65.0% | |
| GTGGAGGGAACCGTAAGGGG+TGG | - | chr4.2:6226012-6226031 | None:intergenic | 65.0% | |
| TACCGGTGCGGAGGAGAGAG+AGG | - | chr4.2:6225809-6225828 | None:intergenic | 65.0% | |
| TCTTGCTGCCGTGTGCGACG+TGG | - | chr4.2:6226031-6226050 | None:intergenic | 65.0% | |
| CGGTGCGGAGGAGAGAGAGG+AGG | - | chr4.2:6225806-6225825 | None:intergenic | 70.0% | |
| GCTGCCGTGTGCGACGTGGA+GGG | - | chr4.2:6226027-6226046 | None:intergenic | 70.0% | |
| TGCTGCCGTGTGCGACGTGG+AGG | - | chr4.2:6226028-6226047 | None:intergenic | 70.0% | |
| GCTCCGGCGGCGGCTAACGA+CGG | - | chr4.2:6226137-6226156 | None:intergenic | 75.0% | |
| TCGCCGTCGTTAGCCGCCGC+CGG | + | chr4.2:6226131-6226150 | MS.gene72120:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 6225600 | 6226970 | 6225600 | ID=MS.gene72120 |
| chr4.2 | mRNA | 6225600 | 6226970 | 6225600 | ID=MS.gene72120.t1;Parent=MS.gene72120 |
| chr4.2 | exon | 6225600 | 6226970 | 6225600 | ID=MS.gene72120.t1.exon1;Parent=MS.gene72120.t1 |
| chr4.2 | CDS | 6225600 | 6226970 | 6225600 | ID=cds.MS.gene72120.t1;Parent=MS.gene72120.t1 |
| Gene Sequence |
| Protein sequence |
