Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72122.t1 | XP_013447054.1 | 98 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 2.20E-256 | 894.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72122.t1 | Q9FN67 | 62.9 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 9.8e-157 | 554.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72122.t1 | A0A072TV73 | 98.0 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 1.6e-256 | 894.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052083 | MS.gene72122 | 0.882601 | 9.09E-71 | -1.69E-46 |
| MS.gene053625 | MS.gene72122 | 0.800442 | 1.44E-48 | -1.69E-46 |
| MS.gene059691 | MS.gene72122 | 0.803515 | 3.36E-49 | -1.69E-46 |
| MS.gene059694 | MS.gene72122 | 0.810755 | 9.85E-51 | -1.69E-46 |
| MS.gene059697 | MS.gene72122 | 0.809284 | 2.04E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72122.t1 | MTR_8g098485 | 98.026 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 0.0 | 920 |
| MS.gene72122.t1 | MTR_7g088170 | 30.901 | 466 | 280 | 13 | 17 | 452 | 16 | 469 | 3.87e-65 | 217 |
| MS.gene72122.t1 | MTR_4g130970 | 23.222 | 478 | 276 | 18 | 20 | 453 | 8 | 438 | 6.75e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72122.t1 | AT5G41330 | 62.889 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 0.0 | 567 |
| MS.gene72122.t1 | AT5G41330 | 62.889 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 0.0 | 567 |
| MS.gene72122.t1 | AT3G09030 | 32.222 | 450 | 282 | 12 | 20 | 453 | 10 | 452 | 2.22e-64 | 214 |
| MS.gene72122.t1 | AT4G30940 | 28.662 | 314 | 190 | 12 | 20 | 316 | 8 | 304 | 1.58e-19 | 90.9 |
| MS.gene72122.t1 | AT2G24240 | 25.383 | 457 | 287 | 18 | 20 | 451 | 8 | 435 | 3.23e-19 | 90.1 |
Find 115 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGTCCTTCTGGTGTTTC+TGG | 0.144577 | 4.2:+6281431 | MS.gene72122:CDS |
| AGGAGAGTCTCTTCCGTTTA+AGG | 0.149332 | 4.2:-6280934 | None:intergenic |
| CATAATCTGTTGATGGCTTC+TGG | 0.224547 | 4.2:+6281401 | MS.gene72122:CDS |
| CGGGTTACAGATTCTTGATT+TGG | 0.229474 | 4.2:+6281130 | MS.gene72122:CDS |
| GCGTTAGAATTGTTGATTTC+CGG | 0.235110 | 4.2:-6281037 | None:intergenic |
| AACAATTCTAACGCACTTTA+CGG | 0.238094 | 4.2:+6281046 | MS.gene72122:CDS |
| AGGAGGAGAGAGAAAATTTC+AGG | 0.240586 | 4.2:-6280747 | None:intergenic |
| TTCGCTCTGGCAACGTTGTT+TGG | 0.244172 | 4.2:+6281474 | MS.gene72122:CDS |
| ACGTGAAGGATACATTAAAT+TGG | 0.258798 | 4.2:+6281162 | MS.gene72122:CDS |
| TTTCTGGTAATGTTAGGTTA+TGG | 0.263715 | 4.2:+6281447 | MS.gene72122:CDS |
| TTCAAAATGCCACCCTTTGC+AGG | 0.268500 | 4.2:+6280555 | None:intergenic |
| GATGGGGAGGGTGCAAGATA+TGG | 0.270075 | 4.2:+6281802 | MS.gene72122:CDS |
| TGTAGCAGTTTCTGATTCTT+TGG | 0.273093 | 4.2:+6281529 | MS.gene72122:CDS |
| ATCCACTGCAGTTTCGTTGC+TGG | 0.283895 | 4.2:-6281371 | None:intergenic |
| CTGGTGTTTCTGGTAATGTT+AGG | 0.286245 | 4.2:+6281441 | MS.gene72122:CDS |
| TAATGGGTTCTTCTAATAAC+AGG | 0.298676 | 4.2:+6281762 | MS.gene72122:CDS |
| TTTAAAGTTGGTGTGAATTC+TGG | 0.298812 | 4.2:+6281560 | MS.gene72122:CDS |
| GGGTCCCACAGTGGTCCTTC+TGG | 0.309924 | 4.2:+6281422 | MS.gene72122:CDS |
| AAGATCACAAATTTGGCATT+TGG | 0.317695 | 4.2:+6281833 | MS.gene72122:CDS |
| TTCTGGTAATGTTAGGTTAT+GGG | 0.332159 | 4.2:+6281448 | MS.gene72122:CDS |
| AAGTTTGGCAGAGTTCTTCT+AGG | 0.335393 | 4.2:+6281900 | MS.gene72122:CDS |
| ATCATAAACAACAATAGAAT+TGG | 0.345014 | 4.2:-6281276 | None:intergenic |
| AGGTGCTAAGATCACAAATT+TGG | 0.365344 | 4.2:+6281826 | MS.gene72122:CDS |
| GGCTTTGGAAGGAAGATTAC+CGG | 0.366750 | 4.2:-6280784 | None:intergenic |
| TCGCTCTGGCAACGTTGTTT+GGG | 0.369820 | 4.2:+6281475 | MS.gene72122:CDS |
| GTCTTGAAGATCAAAGGATT+TGG | 0.378770 | 4.2:-6280805 | None:intergenic |
| TTGTGAGCAATCTCCGTAAC+AGG | 0.383544 | 4.2:-6281314 | None:intergenic |
| TGGGAAAACGTAACGAAATC+TGG | 0.387225 | 4.2:+6281182 | MS.gene72122:CDS |
| ATAATCTGTTGATGGCTTCT+GGG | 0.388853 | 4.2:+6281402 | MS.gene72122:CDS |
| CGTGAAGGATACATTAAATT+GGG | 0.393397 | 4.2:+6281163 | MS.gene72122:CDS |
| TTGTGAGATTGTTGAGAAGA+AGG | 0.396912 | 4.2:-6280688 | None:intergenic |
| TCACTTCAATTACCCTTAAA+CGG | 0.399134 | 4.2:+6280921 | MS.gene72122:CDS |
| AAGATCAAAGGATTTGGCTT+TGG | 0.400270 | 4.2:-6280799 | None:intergenic |
| ATTGCTCACAATGAAATCTA+TGG | 0.400951 | 4.2:+6281326 | MS.gene72122:CDS |
| GGAGAGTCTCTTCCGTTTAA+GGG | 0.401423 | 4.2:-6280933 | None:intergenic |
| CAGATTCTTGATTTGGAAAA+CGG | 0.403375 | 4.2:+6281137 | MS.gene72122:CDS |
| CCCTTTGCAGGTTCTCATCC+CGG | 0.417766 | 4.2:+6280567 | MS.gene72122:CDS |
| GCTATGGTCAGAGATTATAA+TGG | 0.421356 | 4.2:+6281745 | MS.gene72122:CDS |
| TGAAAGTCATAATCTGTTGA+TGG | 0.423697 | 4.2:+6281394 | MS.gene72122:CDS |
| GCAAGATTACAACCTTTGAT+TGG | 0.424151 | 4.2:+6281006 | MS.gene72122:CDS |
| ATTTGCAATGTGTTGAAGTT+TGG | 0.431202 | 4.2:+6281885 | MS.gene72122:CDS |
| GCATAGTTTGAGACCTGTTA+CGG | 0.441604 | 4.2:+6281301 | MS.gene72122:CDS |
| TAGGATGTTCTTAACTAGAA+AGG | 0.445860 | 4.2:+6281862 | MS.gene72122:CDS |
| GCCGGAGCTAATGATTTCTC+CGG | 0.449877 | 4.2:+6281110 | MS.gene72122:CDS |
| ATGGGGAGGGTGCAAGATAT+GGG | 0.456498 | 4.2:+6281803 | MS.gene72122:CDS |
| AGAATTTGGATTCAATGATA+AGG | 0.464890 | 4.2:-6280827 | None:intergenic |
| CTATGGTCAGAGATTATAAT+GGG | 0.475345 | 4.2:+6281746 | MS.gene72122:CDS |
| TGGAATCGCTGAATCGATAT+CGG | 0.479074 | 4.2:-6281351 | None:intergenic |
| AAACAAACCCTAACCTCAGC+TGG | 0.481824 | 4.2:+6280657 | MS.gene72122:CDS |
| ATCATTGAATCCAAATTCTA+CGG | 0.483688 | 4.2:+6280831 | MS.gene72122:CDS |
| GGTTCAACCGTTCAAGCGAT+TGG | 0.484879 | 4.2:+6281203 | MS.gene72122:CDS |
| TTGTTTAGGTGATAAGAGAA+AGG | 0.487551 | 4.2:+6281637 | MS.gene72122:CDS |
| TCGCCGTCGTTAGCCGCCGC+CGG | 0.489018 | 4.2:+6281092 | MS.gene72122:CDS |
| ATCACAAATTTGGCATTTGG+AGG | 0.491735 | 4.2:+6281836 | MS.gene72122:CDS |
| TTGGATGCTATGTTTAAAGT+TGG | 0.491875 | 4.2:+6281548 | MS.gene72122:CDS |
| AAGCTAACAAACATGTTCTC+AGG | 0.493602 | 4.2:-6281233 | None:intergenic |
| CAAGAAGAATTTGATGGGGA+GGG | 0.495473 | 4.2:+6281790 | MS.gene72122:CDS |
| TTGAAAGGTTCAAATTGAGA+AGG | 0.496364 | 4.2:-6280888 | None:intergenic |
| AGGTTATGGGATGTTCGCTC+TGG | 0.496629 | 4.2:+6281461 | MS.gene72122:CDS |
| CCTTTGATTGGTCACTTCGC+CGG | 0.499137 | 4.2:+6281018 | MS.gene72122:CDS |
| TGAAAGGTTCAAATTGAGAA+GGG | 0.502836 | 4.2:-6280887 | None:intergenic |
| GGGGTGGTTGCAACGGTGGA+AGG | 0.505309 | 4.2:-6280954 | None:intergenic |
| CTCCTCTCTCTCCTCCGCAC+CGG | 0.507223 | 4.2:+6280765 | MS.gene72122:CDS |
| ATTTGGCATTTGGAGGAAGT+AGG | 0.517181 | 4.2:+6281843 | MS.gene72122:CDS |
| TCAAAGGATTTGGCTTTGGA+AGG | 0.521892 | 4.2:-6280795 | None:intergenic |
| TACCGGTGCGGAGGAGAGAG+AGG | 0.527787 | 4.2:-6280767 | None:intergenic |
| ACCGTAAGGGGTGGTTGCAA+CGG | 0.528739 | 4.2:-6280961 | None:intergenic |
| CCCGGAGAAATCATTAGCTC+CGG | 0.530387 | 4.2:-6281111 | None:intergenic |
| GGAGGAGAGAGAAAATTTCA+GGG | 0.531374 | 4.2:-6280746 | None:intergenic |
| GAAAGGTGTGTAGGGTGAAG+AGG | 0.538108 | 4.2:-6280712 | None:intergenic |
| ACCGTTGCAACCACCCCTTA+CGG | 0.539975 | 4.2:+6280960 | MS.gene72122:CDS |
| GATAAGGTCTTGAAGATCAA+AGG | 0.542021 | 4.2:-6280811 | None:intergenic |
| TTGCACTAAGGGTGGTGATG+TGG | 0.542476 | 4.2:+6281721 | MS.gene72122:CDS |
| TCAAGAAGAATTTGATGGGG+AGG | 0.543104 | 4.2:+6281789 | MS.gene72122:CDS |
| TGCTGCCGTGTGCGACGTGG+AGG | 0.546307 | 4.2:-6280986 | None:intergenic |
| CCGGAGCTAATGATTTCTCC+GGG | 0.550287 | 4.2:+6281111 | MS.gene72122:CDS |
| GTCTGATCTGAAAACACCAC+CGG | 0.555052 | 4.2:-6280586 | None:intergenic |
| GACGTGGAGGGAACCGTAAG+GGG | 0.556034 | 4.2:-6280973 | None:intergenic |
| TCTGTCGATGAAAGGTGTGT+AGG | 0.558071 | 4.2:-6280721 | None:intergenic |
| AGTTTGGCAGAGTTCTTCTA+GGG | 0.559490 | 4.2:+6281901 | MS.gene72122:CDS |
| CGACGTGGAGGGAACCGTAA+GGG | 0.559572 | 4.2:-6280974 | None:intergenic |
| CTGTCGATGAAAGGTGTGTA+GGG | 0.561965 | 4.2:-6280720 | None:intergenic |
| CCGGCGAAGTGACCAATCAA+AGG | 0.568312 | 4.2:-6281018 | None:intergenic |
| GCGACGTGGAGGGAACCGTA+AGG | 0.579972 | 4.2:-6280975 | None:intergenic |
| TCAGGGTCTCTGTCGATGAA+AGG | 0.581587 | 4.2:-6280729 | None:intergenic |
| GAAATCATTAGCTCCGGCGG+CGG | 0.582033 | 4.2:-6281105 | None:intergenic |
| GGTTGCAAAATTGAAACACA+AGG | 0.582683 | 4.2:+6281686 | MS.gene72122:CDS |
| TGAAGAACCAATCGCTTGAA+CGG | 0.585234 | 4.2:-6281210 | None:intergenic |
| CAAATCAAGAATCTGTAACC+CGG | 0.585490 | 4.2:-6281129 | None:intergenic |
| AACATAGTCACAATCGACGT+TGG | 0.585850 | 4.2:+6280612 | MS.gene72122:CDS |
| GCTCCGGCGGCGGCTAACGA+CGG | 0.587441 | 4.2:-6281095 | None:intergenic |
| CCGGGATGAGAACCTGCAAA+GGG | 0.593697 | 4.2:-6280567 | None:intergenic |
| TTTGGAAAACGGTTACGTGA+AGG | 0.595270 | 4.2:+6281148 | MS.gene72122:CDS |
| GGTTCCCTCCACGTCGCACA+CGG | 0.603417 | 4.2:+6280981 | MS.gene72122:CDS |
| CGGTGCGGAGGAGAGAGAGG+AGG | 0.605383 | 4.2:-6280764 | None:intergenic |
| ATAGTCACAATCGACGTTGG+AGG | 0.605832 | 4.2:+6280615 | MS.gene72122:CDS |
| GTTGCAAAATTGAAACACAA+GGG | 0.608708 | 4.2:+6281687 | MS.gene72122:CDS |
| ACCGGGATGAGAACCTGCAA+AGG | 0.610342 | 4.2:-6280568 | None:intergenic |
| GCTGCCGTGTGCGACGTGGA+GGG | 0.616967 | 4.2:-6280985 | None:intergenic |
| GTAAGGGGTGGTTGCAACGG+TGG | 0.625552 | 4.2:-6280958 | None:intergenic |
| TTCCAGCAACGAAACTGCAG+TGG | 0.625740 | 4.2:+6281369 | MS.gene72122:CDS |
| AACACCAGAAGGACCACTGT+GGG | 0.627063 | 4.2:-6281426 | None:intergenic |
| AAGGAAGATTACCGGTGCGG+AGG | 0.628049 | 4.2:-6280776 | None:intergenic |
| AGGGTGGTGATGTGGAGCTA+TGG | 0.628784 | 4.2:+6281729 | MS.gene72122:CDS |
| GGAGAAATCATTAGCTCCGG+CGG | 0.638372 | 4.2:-6281108 | None:intergenic |
| TCTTGCTGCCGTGTGCGACG+TGG | 0.646818 | 4.2:-6280989 | None:intergenic |
| ATGGCTTCTGGGTCCCACAG+TGG | 0.650573 | 4.2:+6281413 | MS.gene72122:CDS |
| GTGGAGGGAACCGTAAGGGG+TGG | 0.652569 | 4.2:-6280970 | None:intergenic |
| GGATGAGAACCTGCAAAGGG+TGG | 0.660246 | 4.2:-6280564 | None:intergenic |
| TGGAAGGAAGATTACCGGTG+CGG | 0.667763 | 4.2:-6280779 | None:intergenic |
| TTTGCAGGTTCTCATCCCGG+TGG | 0.693634 | 4.2:+6280570 | MS.gene72122:CDS |
| ACATTACCAGAAACACCAGA+AGG | 0.701677 | 4.2:-6281437 | None:intergenic |
| GGGAGGGTGCAAGATATGGG+AGG | 0.711495 | 4.2:+6281806 | MS.gene72122:CDS |
| TCTGATCTGAAAACACCACC+GGG | 0.715720 | 4.2:-6280585 | None:intergenic |
| AAACACCAGAAGGACCACTG+TGG | 0.737767 | 4.2:-6281427 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATAAACAACAATAGAAT+TGG | - | chr4.2:6281279-6281298 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGAAGAATTTGAT+GGG | + | chr4.2:6281785-6281804 | MS.gene72122:CDS | 20.0% |
| ! | AGAATTTGGATTCAATGATA+AGG | - | chr4.2:6280830-6280849 | None:intergenic | 25.0% |
| ! | ATCATTGAATCCAAATTCTA+CGG | + | chr4.2:6280831-6280850 | MS.gene72122:CDS | 25.0% |
| !! | TTTTGAATGGGAAAAAAGAA+GGG | + | chr4.2:6281660-6281679 | MS.gene72122:CDS | 25.0% |
| !!! | AATCAAGTTTTTTGCACTAA+GGG | + | chr4.2:6281710-6281729 | MS.gene72122:CDS | 25.0% |
| !!! | ATAAGAGAAAGGTTTTGAAT+GGG | + | chr4.2:6281648-6281667 | MS.gene72122:CDS | 25.0% |
| !!! | GATTTTCAAGAAGAATTTGA+TGG | + | chr4.2:6281784-6281803 | MS.gene72122:CDS | 25.0% |
| !!! | GTTTTGTTGTTTGAAACAAT+TGG | - | chr4.2:6280641-6280660 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAAGAATTTGATG+GGG | + | chr4.2:6281786-6281805 | MS.gene72122:CDS | 25.0% |
| AACAATTCTAACGCACTTTA+CGG | + | chr4.2:6281046-6281065 | MS.gene72122:CDS | 30.0% | |
| AAGATCACAAATTTGGCATT+TGG | + | chr4.2:6281833-6281852 | MS.gene72122:CDS | 30.0% | |
| ACGTGAAGGATACATTAAAT+TGG | + | chr4.2:6281162-6281181 | MS.gene72122:CDS | 30.0% | |
| ATTGCTCACAATGAAATCTA+TGG | + | chr4.2:6281326-6281345 | MS.gene72122:CDS | 30.0% | |
| ATTTGCAATGTGTTGAAGTT+TGG | + | chr4.2:6281885-6281904 | MS.gene72122:CDS | 30.0% | |
| CGTGAAGGATACATTAAATT+GGG | + | chr4.2:6281163-6281182 | MS.gene72122:CDS | 30.0% | |
| CTATGGTCAGAGATTATAAT+GGG | + | chr4.2:6281746-6281765 | MS.gene72122:CDS | 30.0% | |
| GTTGCAAAATTGAAACACAA+GGG | + | chr4.2:6281687-6281706 | MS.gene72122:CDS | 30.0% | |
| TAGGATGTTCTTAACTAGAA+AGG | + | chr4.2:6281862-6281881 | MS.gene72122:CDS | 30.0% | |
| TCACTTCAATTACCCTTAAA+CGG | + | chr4.2:6280921-6280940 | MS.gene72122:CDS | 30.0% | |
| TGAAAGGTTCAAATTGAGAA+GGG | - | chr4.2:6280890-6280909 | None:intergenic | 30.0% | |
| TGAAAGTCATAATCTGTTGA+TGG | + | chr4.2:6281394-6281413 | MS.gene72122:CDS | 30.0% | |
| TTGAAAGGTTCAAATTGAGA+AGG | - | chr4.2:6280891-6280910 | None:intergenic | 30.0% | |
| TTGTTTAGGTGATAAGAGAA+AGG | + | chr4.2:6281637-6281656 | MS.gene72122:CDS | 30.0% | |
| ! | AAAAATGCATGGGTTTGTTT+AGG | + | chr4.2:6281623-6281642 | MS.gene72122:CDS | 30.0% |
| ! | ATTGTTGAGAAGAAGGTTTT+TGG | - | chr4.2:6280684-6280703 | None:intergenic | 30.0% |
| ! | TTCTGGTAATGTTAGGTTAT+GGG | + | chr4.2:6281448-6281467 | MS.gene72122:CDS | 30.0% |
| ! | TTGGATGCTATGTTTAAAGT+TGG | + | chr4.2:6281548-6281567 | MS.gene72122:CDS | 30.0% |
| ! | TTTCTGGTAATGTTAGGTTA+TGG | + | chr4.2:6281447-6281466 | MS.gene72122:CDS | 30.0% |
| !! | CAGATTCTTGATTTGGAAAA+CGG | + | chr4.2:6281137-6281156 | MS.gene72122:CDS | 30.0% |
| !! | GTTTTGAATGGGAAAAAAGA+AGG | + | chr4.2:6281659-6281678 | MS.gene72122:CDS | 30.0% |
| !! | TAATGGGTTCTTCTAATAAC+AGG | + | chr4.2:6281762-6281781 | MS.gene72122:CDS | 30.0% |
| !! | TTTAAAGTTGGTGTGAATTC+TGG | + | chr4.2:6281560-6281579 | MS.gene72122:CDS | 30.0% |
| !!! | AGTGAGTTTTGAAGATTGAA+AGG | - | chr4.2:6280906-6280925 | None:intergenic | 30.0% |
| !!! | GAATCAAGTTTTTTGCACTA+AGG | + | chr4.2:6281709-6281728 | MS.gene72122:CDS | 30.0% |
| !!! | GATAAGAGAAAGGTTTTGAA+TGG | + | chr4.2:6281647-6281666 | MS.gene72122:CDS | 30.0% |
| AAGCTAACAAACATGTTCTC+AGG | - | chr4.2:6281236-6281255 | None:intergenic | 35.0% | |
| AATGGGAAAAAAGAAGGGTT+TGG | + | chr4.2:6281665-6281684 | MS.gene72122:CDS | 35.0% | |
| AGGTGCTAAGATCACAAATT+TGG | + | chr4.2:6281826-6281845 | MS.gene72122:CDS | 35.0% | |
| ATCACAAATTTGGCATTTGG+AGG | + | chr4.2:6281836-6281855 | MS.gene72122:CDS | 35.0% | |
| CAAATCAAGAATCTGTAACC+CGG | - | chr4.2:6281132-6281151 | None:intergenic | 35.0% | |
| GATAAGGTCTTGAAGATCAA+AGG | - | chr4.2:6280814-6280833 | None:intergenic | 35.0% | |
| GCAAGATTACAACCTTTGAT+TGG | + | chr4.2:6281006-6281025 | MS.gene72122:CDS | 35.0% | |
| GCTATGGTCAGAGATTATAA+TGG | + | chr4.2:6281745-6281764 | MS.gene72122:CDS | 35.0% | |
| GGTTGCAAAATTGAAACACA+AGG | + | chr4.2:6281686-6281705 | MS.gene72122:CDS | 35.0% | |
| GTCTTGAAGATCAAAGGATT+TGG | - | chr4.2:6280808-6280827 | None:intergenic | 35.0% | |
| TGTAGCAGTTTCTGATTCTT+TGG | + | chr4.2:6281529-6281548 | MS.gene72122:CDS | 35.0% | |
| TTGTGAGATTGTTGAGAAGA+AGG | - | chr4.2:6280691-6280710 | None:intergenic | 35.0% | |
| ! | AAGATCAAAGGATTTGGCTT+TGG | - | chr4.2:6280802-6280821 | None:intergenic | 35.0% |
| ! | ATTTTCGATGCCGTAGAATT+TGG | - | chr4.2:6280844-6280863 | None:intergenic | 35.0% |
| !! | ATAATCTGTTGATGGCTTCT+GGG | + | chr4.2:6281402-6281421 | MS.gene72122:CDS | 35.0% |
| !! | GAGTTCTGAGAAAAATGCAT+GGG | + | chr4.2:6281613-6281632 | MS.gene72122:CDS | 35.0% |
| !! | GCGTTAGAATTGTTGATTTC+CGG | - | chr4.2:6281040-6281059 | None:intergenic | 35.0% |
| !! | TGAGTTCTGAGAAAAATGCA+TGG | + | chr4.2:6281612-6281631 | MS.gene72122:CDS | 35.0% |
| !! | TTCTGGTGAAGCGTTTTATA+TGG | + | chr4.2:6281577-6281596 | MS.gene72122:CDS | 35.0% |
| AACATAGTCACAATCGACGT+TGG | + | chr4.2:6280612-6280631 | MS.gene72122:CDS | 40.0% | |
| AAGTTTGGCAGAGTTCTTCT+AGG | + | chr4.2:6281900-6281919 | MS.gene72122:CDS | 40.0% | |
| ACATTACCAGAAACACCAGA+AGG | - | chr4.2:6281440-6281459 | None:intergenic | 40.0% | |
| AGGAGGAGAGAGAAAATTTC+AGG | - | chr4.2:6280750-6280769 | None:intergenic | 40.0% | |
| AGTTTGGCAGAGTTCTTCTA+GGG | + | chr4.2:6281901-6281920 | MS.gene72122:CDS | 40.0% | |
| ATTTGGCATTTGGAGGAAGT+AGG | + | chr4.2:6281843-6281862 | MS.gene72122:CDS | 40.0% | |
| CAAGAAGAATTTGATGGGGA+GGG | + | chr4.2:6281790-6281809 | MS.gene72122:CDS | 40.0% | |
| CGGGTTACAGATTCTTGATT+TGG | + | chr4.2:6281130-6281149 | MS.gene72122:CDS | 40.0% | |
| GGAGGAGAGAGAAAATTTCA+GGG | - | chr4.2:6280749-6280768 | None:intergenic | 40.0% | |
| TCAAGAAGAATTTGATGGGG+AGG | + | chr4.2:6281789-6281808 | MS.gene72122:CDS | 40.0% | |
| TGAAGAACCAATCGCTTGAA+CGG | - | chr4.2:6281213-6281232 | None:intergenic | 40.0% | |
| TGGAATCGCTGAATCGATAT+CGG | - | chr4.2:6281354-6281373 | None:intergenic | 40.0% | |
| TGGGAAAACGTAACGAAATC+TGG | + | chr4.2:6281182-6281201 | MS.gene72122:CDS | 40.0% | |
| TTTGGAAAACGGTTACGTGA+AGG | + | chr4.2:6281148-6281167 | MS.gene72122:CDS | 40.0% | |
| ! | GCATAGTTTGAGACCTGTTA+CGG | + | chr4.2:6281301-6281320 | MS.gene72122:CDS | 40.0% |
| !! | CATAATCTGTTGATGGCTTC+TGG | + | chr4.2:6281401-6281420 | MS.gene72122:CDS | 40.0% |
| !! | CTGGTGTTTCTGGTAATGTT+AGG | + | chr4.2:6281441-6281460 | MS.gene72122:CDS | 40.0% |
| !! | TCAAAGGATTTGGCTTTGGA+AGG | - | chr4.2:6280798-6280817 | None:intergenic | 40.0% |
| !!! | CAAGTTTTTTGCACTAAGGG+TGG | + | chr4.2:6281713-6281732 | MS.gene72122:CDS | 40.0% |
| AAACAAACCCTAACCTCAGC+TGG | + | chr4.2:6280657-6280676 | MS.gene72122:CDS | 45.0% | |
| AGGAGAGTCTCTTCCGTTTA+AGG | - | chr4.2:6280937-6280956 | None:intergenic | 45.0% | |
| ATAGTCACAATCGACGTTGG+AGG | + | chr4.2:6280615-6280634 | MS.gene72122:CDS | 45.0% | |
| GGAGAGTCTCTTCCGTTTAA+GGG | - | chr4.2:6280936-6280955 | None:intergenic | 45.0% | |
| GTCTGATCTGAAAACACCAC+CGG | - | chr4.2:6280589-6280608 | None:intergenic | 45.0% | |
| TCTGATCTGAAAACACCACC+GGG | - | chr4.2:6280588-6280607 | None:intergenic | 45.0% | |
| TTGTGAGCAATCTCCGTAAC+AGG | - | chr4.2:6281317-6281336 | None:intergenic | 45.0% | |
| ! | CTGTCGATGAAAGGTGTGTA+GGG | - | chr4.2:6280723-6280742 | None:intergenic | 45.0% |
| ! | TCTGTCGATGAAAGGTGTGT+AGG | - | chr4.2:6280724-6280743 | None:intergenic | 45.0% |
| ! | TTTTGGTCCAGCTGAGGTTA+GGG | - | chr4.2:6280667-6280686 | None:intergenic | 45.0% |
| !! | GGCTTTGGAAGGAAGATTAC+CGG | - | chr4.2:6280787-6280806 | None:intergenic | 45.0% |
| !! | TTTTTGGTCCAGCTGAGGTT+AGG | - | chr4.2:6280668-6280687 | None:intergenic | 45.0% |
| AAACACCAGAAGGACCACTG+TGG | - | chr4.2:6281430-6281449 | None:intergenic | 50.0% | |
| AACACCAGAAGGACCACTGT+GGG | - | chr4.2:6281429-6281448 | None:intergenic | 50.0% | |
| AGGTTATGGGATGTTCGCTC+TGG | + | chr4.2:6281461-6281480 | MS.gene72122:CDS | 50.0% | |
| AGTGGTCCTTCTGGTGTTTC+TGG | + | chr4.2:6281431-6281450 | MS.gene72122:CDS | 50.0% | |
| ATCCACTGCAGTTTCGTTGC+TGG | - | chr4.2:6281374-6281393 | None:intergenic | 50.0% | |
| CCCGGAGAAATCATTAGCTC+CGG | - | chr4.2:6281114-6281133 | None:intergenic | 50.0% | |
| CCGGAGCTAATGATTTCTCC+GGG | + | chr4.2:6281111-6281130 | MS.gene72122:CDS | 50.0% | |
| GCCGGAGCTAATGATTTCTC+CGG | + | chr4.2:6281110-6281129 | MS.gene72122:CDS | 50.0% | |
| GGAGAAATCATTAGCTCCGG+CGG | - | chr4.2:6281111-6281130 | None:intergenic | 50.0% | |
| GGTTCAACCGTTCAAGCGAT+TGG | + | chr4.2:6281203-6281222 | MS.gene72122:CDS | 50.0% | |
| TCAGGGTCTCTGTCGATGAA+AGG | - | chr4.2:6280732-6280751 | None:intergenic | 50.0% | |
| TCGCTCTGGCAACGTTGTTT+GGG | + | chr4.2:6281475-6281494 | MS.gene72122:CDS | 50.0% | |
| TGGAAGGAAGATTACCGGTG+CGG | - | chr4.2:6280782-6280801 | None:intergenic | 50.0% | |
| TTCCAGCAACGAAACTGCAG+TGG | + | chr4.2:6281369-6281388 | MS.gene72122:CDS | 50.0% | |
| TTCGCTCTGGCAACGTTGTT+TGG | + | chr4.2:6281474-6281493 | MS.gene72122:CDS | 50.0% | |
| ! | ATGGGGAGGGTGCAAGATAT+GGG | + | chr4.2:6281803-6281822 | MS.gene72122:CDS | 50.0% |
| ! | CCTTTGATTGGTCACTTCGC+CGG | + | chr4.2:6281018-6281037 | MS.gene72122:CDS | 50.0% |
| ! | GAAAGGTGTGTAGGGTGAAG+AGG | - | chr4.2:6280715-6280734 | None:intergenic | 50.0% |
| ! | TTGCACTAAGGGTGGTGATG+TGG | + | chr4.2:6281721-6281740 | MS.gene72122:CDS | 50.0% |
| !!! | GAAGGTTTTTGGTCCAGCTG+AGG | - | chr4.2:6280673-6280692 | None:intergenic | 50.0% |
| AAGGAAGATTACCGGTGCGG+AGG | - | chr4.2:6280779-6280798 | None:intergenic | 55.0% | |
| ACCGGGATGAGAACCTGCAA+AGG | - | chr4.2:6280571-6280590 | None:intergenic | 55.0% | |
| ACCGTAAGGGGTGGTTGCAA+CGG | - | chr4.2:6280964-6280983 | None:intergenic | 55.0% | |
| ACCGTTGCAACCACCCCTTA+CGG | + | chr4.2:6280960-6280979 | MS.gene72122:CDS | 55.0% | |
| CCCTTTGCAGGTTCTCATCC+CGG | + | chr4.2:6280567-6280586 | MS.gene72122:CDS | 55.0% | |
| CCGGCGAAGTGACCAATCAA+AGG | - | chr4.2:6281021-6281040 | None:intergenic | 55.0% | |
| CCGGGATGAGAACCTGCAAA+GGG | - | chr4.2:6280570-6280589 | None:intergenic | 55.0% | |
| GAAATCATTAGCTCCGGCGG+CGG | - | chr4.2:6281108-6281127 | None:intergenic | 55.0% | |
| GGATGAGAACCTGCAAAGGG+TGG | - | chr4.2:6280567-6280586 | None:intergenic | 55.0% | |
| TTTGCAGGTTCTCATCCCGG+TGG | + | chr4.2:6280570-6280589 | MS.gene72122:CDS | 55.0% | |
| ! | AGGGTGGTGATGTGGAGCTA+TGG | + | chr4.2:6281729-6281748 | MS.gene72122:CDS | 55.0% |
| ! | GATGGGGAGGGTGCAAGATA+TGG | + | chr4.2:6281802-6281821 | MS.gene72122:CDS | 55.0% |
| ATGGCTTCTGGGTCCCACAG+TGG | + | chr4.2:6281413-6281432 | MS.gene72122:CDS | 60.0% | |
| CGACGTGGAGGGAACCGTAA+GGG | - | chr4.2:6280977-6280996 | None:intergenic | 60.0% | |
| GACGTGGAGGGAACCGTAAG+GGG | - | chr4.2:6280976-6280995 | None:intergenic | 60.0% | |
| GTAAGGGGTGGTTGCAACGG+TGG | - | chr4.2:6280961-6280980 | None:intergenic | 60.0% | |
| ! | GGGAGGGTGCAAGATATGGG+AGG | + | chr4.2:6281806-6281825 | MS.gene72122:CDS | 60.0% |
| CTCCTCTCTCTCCTCCGCAC+CGG | + | chr4.2:6280765-6280784 | MS.gene72122:CDS | 65.0% | |
| GCGACGTGGAGGGAACCGTA+AGG | - | chr4.2:6280978-6280997 | None:intergenic | 65.0% | |
| GGGGTGGTTGCAACGGTGGA+AGG | - | chr4.2:6280957-6280976 | None:intergenic | 65.0% | |
| GGGTCCCACAGTGGTCCTTC+TGG | + | chr4.2:6281422-6281441 | MS.gene72122:CDS | 65.0% | |
| GGTTCCCTCCACGTCGCACA+CGG | + | chr4.2:6280981-6281000 | MS.gene72122:CDS | 65.0% | |
| GTGGAGGGAACCGTAAGGGG+TGG | - | chr4.2:6280973-6280992 | None:intergenic | 65.0% | |
| TACCGGTGCGGAGGAGAGAG+AGG | - | chr4.2:6280770-6280789 | None:intergenic | 65.0% | |
| TCTTGCTGCCGTGTGCGACG+TGG | - | chr4.2:6280992-6281011 | None:intergenic | 65.0% | |
| CGGTGCGGAGGAGAGAGAGG+AGG | - | chr4.2:6280767-6280786 | None:intergenic | 70.0% | |
| GCTGCCGTGTGCGACGTGGA+GGG | - | chr4.2:6280988-6281007 | None:intergenic | 70.0% | |
| TGCTGCCGTGTGCGACGTGG+AGG | - | chr4.2:6280989-6281008 | None:intergenic | 70.0% | |
| GCTCCGGCGGCGGCTAACGA+CGG | - | chr4.2:6281098-6281117 | None:intergenic | 75.0% | |
| TCGCCGTCGTTAGCCGCCGC+CGG | + | chr4.2:6281092-6281111 | MS.gene72122:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 6280561 | 6281931 | 6280561 | ID=MS.gene72122 |
| chr4.2 | mRNA | 6280561 | 6281931 | 6280561 | ID=MS.gene72122.t1;Parent=MS.gene72122 |
| chr4.2 | exon | 6280561 | 6281931 | 6280561 | ID=MS.gene72122.t1.exon1;Parent=MS.gene72122.t1 |
| chr4.2 | CDS | 6280561 | 6281931 | 6280561 | ID=cds.MS.gene72122.t1;Parent=MS.gene72122.t1 |
| Gene Sequence |
| Protein sequence |
