Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72417.t1 | XP_013468053.1 | 99.4 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 2.00E-201 | 711.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72417.t1 | Q9SJQ9 | 86.9 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 7.9e-178 | 624.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72417.t1 | A0A072VVG3 | 99.4 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 1.5e-201 | 711.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053971 | MS.gene72417 | -0.815254 | 1.02E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene72417 | -0.802728 | 4.89E-49 | -1.69E-46 |
| MS.gene055601 | MS.gene72417 | 0.818701 | 1.71E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene72417 | -0.843736 | 1.17E-58 | -1.69E-46 |
| MS.gene056899 | MS.gene72417 | 0.805777 | 1.13E-49 | -1.69E-46 |
| MS.gene058746 | MS.gene72417 | -0.819571 | 1.08E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene72417 | 0.801738 | 7.82E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72417.t1 | MTR_1g061050 | 99.441 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 0.0 | 731 |
| MS.gene72417.t1 | MTR_5g069055 | 86.034 | 358 | 50 | 0 | 1 | 358 | 1 | 358 | 0.0 | 637 |
| MS.gene72417.t1 | MTR_5g069050 | 79.609 | 358 | 58 | 1 | 1 | 358 | 42 | 384 | 0.0 | 576 |
| MS.gene72417.t1 | MTR_5g096670 | 75.698 | 358 | 86 | 1 | 1 | 358 | 1 | 357 | 0.0 | 556 |
| MS.gene72417.t1 | MTR_4g057670 | 55.398 | 352 | 152 | 4 | 8 | 358 | 53 | 400 | 9.28e-131 | 380 |
| MS.gene72417.t1 | MTR_4g071860 | 55.398 | 352 | 152 | 4 | 8 | 358 | 53 | 400 | 1.13e-130 | 379 |
| MS.gene72417.t1 | MTR_1g109200 | 52.809 | 356 | 163 | 4 | 4 | 358 | 40 | 391 | 4.36e-128 | 373 |
| MS.gene72417.t1 | MTR_4g071880 | 49.577 | 355 | 156 | 6 | 8 | 358 | 51 | 386 | 5.52e-109 | 324 |
| MS.gene72417.t1 | MTR_7g103920 | 69.474 | 95 | 4 | 1 | 112 | 206 | 11 | 80 | 1.45e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72417.t1 | AT2G36460 | 86.872 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 0.0 | 645 |
| MS.gene72417.t1 | AT3G52930 | 86.313 | 358 | 49 | 0 | 1 | 358 | 1 | 358 | 0.0 | 638 |
| MS.gene72417.t1 | AT5G03690 | 86.072 | 359 | 49 | 1 | 1 | 358 | 1 | 359 | 0.0 | 612 |
| MS.gene72417.t1 | AT5G03690 | 86.533 | 349 | 46 | 1 | 11 | 358 | 45 | 393 | 0.0 | 598 |
| MS.gene72417.t1 | AT4G26530 | 77.654 | 358 | 80 | 0 | 1 | 358 | 1 | 358 | 0.0 | 572 |
| MS.gene72417.t1 | AT4G26530 | 77.654 | 358 | 80 | 0 | 1 | 358 | 1 | 358 | 0.0 | 572 |
| MS.gene72417.t1 | AT4G26530 | 77.654 | 358 | 80 | 0 | 1 | 358 | 1 | 358 | 0.0 | 572 |
| MS.gene72417.t1 | AT4G26520 | 72.905 | 358 | 97 | 0 | 1 | 358 | 1 | 358 | 0.0 | 531 |
| MS.gene72417.t1 | AT4G26520 | 73.034 | 356 | 96 | 0 | 1 | 356 | 1 | 356 | 0.0 | 528 |
| MS.gene72417.t1 | AT4G26520 | 72.779 | 349 | 95 | 0 | 10 | 358 | 7 | 355 | 0.0 | 516 |
| MS.gene72417.t1 | AT4G26520 | 72.779 | 349 | 95 | 0 | 10 | 358 | 7 | 355 | 0.0 | 516 |
| MS.gene72417.t1 | AT2G36460 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 5.33e-175 | 487 |
| MS.gene72417.t1 | AT2G36460 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 5.33e-175 | 487 |
| MS.gene72417.t1 | AT5G03690 | 87.266 | 267 | 33 | 1 | 93 | 358 | 1 | 267 | 4.01e-163 | 457 |
| MS.gene72417.t1 | AT5G03690 | 87.266 | 267 | 33 | 1 | 93 | 358 | 1 | 267 | 4.01e-163 | 457 |
| MS.gene72417.t1 | AT4G38970 | 55.367 | 354 | 153 | 4 | 6 | 358 | 49 | 398 | 4.79e-132 | 383 |
| MS.gene72417.t1 | AT2G21330 | 54.237 | 354 | 157 | 4 | 6 | 358 | 50 | 399 | 5.42e-129 | 375 |
| MS.gene72417.t1 | AT2G01140 | 54.830 | 352 | 154 | 4 | 8 | 358 | 44 | 391 | 2.18e-128 | 374 |
| MS.gene72417.t1 | AT2G21330 | 52.260 | 354 | 154 | 5 | 6 | 358 | 50 | 389 | 7.21e-120 | 352 |
| MS.gene72417.t1 | AT4G38970 | 55.598 | 259 | 113 | 2 | 6 | 263 | 49 | 306 | 7.61e-94 | 285 |
| MS.gene72417.t1 | AT2G21330 | 53.668 | 259 | 118 | 2 | 6 | 263 | 50 | 307 | 1.45e-91 | 277 |
Find 96 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCCAATGCTGCTTATAT+TGG | 0.273936 | 1.4:-50265586 | MS.gene72417:CDS |
| TGGACTCTTACATTCTCTTA+TGG | 0.280031 | 1.4:-50264146 | MS.gene72417:CDS |
| AGCAATGCAGCTTGAGCTTT+AGG | 0.286122 | 1.4:+50264068 | None:intergenic |
| CTCAAGCTGCATTGCTTGTT+AGG | 0.288958 | 1.4:-50264061 | MS.gene72417:CDS |
| GATCCTGGTGTAACCATATT+AGG | 0.309736 | 1.4:+50264338 | None:intergenic |
| GAAGAAAGCTGGAGTTCTTC+CGG | 0.325790 | 1.4:-50264735 | MS.gene72417:CDS |
| GACAAGGGAGATGGTTCATT+TGG | 0.333091 | 1.4:+50264563 | None:intergenic |
| AGCAGCAAGGATACCCTTTC+CGG | 0.352251 | 1.4:+50265558 | None:intergenic |
| ATAACCTCAGGAGCAACTTT+AGG | 0.366412 | 1.4:+50264308 | None:intergenic |
| TAATGCAATGAACAAACTTA+AGG | 0.371253 | 1.4:-50264180 | MS.gene72417:CDS |
| TAAGTTTGTTCATTGCATTA+AGG | 0.377716 | 1.4:+50264183 | None:intergenic |
| CCGGTGCAAGGTTCGCTAAA+TGG | 0.381985 | 1.4:-50264607 | MS.gene72417:CDS |
| TTCAGAGTCTCTTCATGTTA+AGG | 0.387381 | 1.4:-50263973 | MS.gene72417:CDS |
| GTTGAACTTGCCGGCACAAA+TGG | 0.411220 | 1.4:-50264689 | MS.gene72417:CDS |
| GATGAATCTACTGGCACAAT+TGG | 0.412825 | 1.4:-50265535 | MS.gene72417:CDS |
| GAACTCTTGTTCACTGCCCC+TGG | 0.414062 | 1.4:-50265454 | MS.gene72417:CDS |
| AAGAAAGCTGGAGTTCTTCC+GGG | 0.415915 | 1.4:-50264734 | MS.gene72417:CDS |
| AATGCAATGAACAAACTTAA+GGG | 0.427010 | 1.4:-50264179 | MS.gene72417:CDS |
| GACCATCATGTTCTTCTTGA+AGG | 0.430660 | 1.4:-50264374 | MS.gene72417:CDS |
| AGAATCTCAGGCTCTACAAT+TGG | 0.433301 | 1.4:+50264476 | None:intergenic |
| CAAAGCTCGGACTGTGTGTT+GGG | 0.435174 | 1.4:+50264283 | None:intergenic |
| AAGGGAACCGTTGAACTTGC+CGG | 0.435648 | 1.4:-50264698 | MS.gene72417:CDS |
| GCAGCAAGGATACCCTTTCC+GGG | 0.463973 | 1.4:+50265559 | None:intergenic |
| CCCTTGTCAACCTTGATACC+CGG | 0.464933 | 1.4:+50264716 | None:intergenic |
| GCTGCTTATATTGGCTCTCC+CGG | 0.465324 | 1.4:-50265577 | MS.gene72417:CDS |
| AGAAACCACAACTCAAGGTT+TGG | 0.472063 | 1.4:-50264666 | MS.gene72417:CDS |
| AACTTAAGGGAAAGAAGCCT+TGG | 0.474897 | 1.4:-50264166 | MS.gene72417:CDS |
| TGGAGTTCTTCCGGGTATCA+AGG | 0.478690 | 1.4:-50264726 | MS.gene72417:CDS |
| CGTTCTTGCAACATGTTACA+AGG | 0.482121 | 1.4:-50264405 | MS.gene72417:CDS |
| GATCCATCCACTAGAATCTC+AGG | 0.488146 | 1.4:+50264464 | None:intergenic |
| GCCGTCATATGCCAAGAGAA+TGG | 0.489726 | 1.4:-50264506 | MS.gene72417:CDS |
| CCAGACAAGAAAACTATAGC+TGG | 0.490239 | 1.4:+50264236 | None:intergenic |
| TTGGAACCAAACCATTCTCT+TGG | 0.499681 | 1.4:+50264495 | None:intergenic |
| AGCTGGAACTGCGGCAGGAA+CGG | 0.501285 | 1.4:+50264253 | None:intergenic |
| ACTTCAGCAAAGTACTCTTA+AGG | 0.501897 | 1.4:-50264117 | MS.gene72417:CDS |
| TATATTGGCTCTCCCGGAAA+GGG | 0.502381 | 1.4:-50265571 | MS.gene72417:CDS |
| TTCTTCAACACATCCACAAA+GGG | 0.502730 | 1.4:+50264752 | None:intergenic |
| ACTATAGCTGGAACTGCGGC+AGG | 0.507134 | 1.4:+50264248 | None:intergenic |
| GCAAAGTACTCTTAAGGCAT+GGG | 0.512733 | 1.4:-50264111 | MS.gene72417:CDS |
| GTGTGTTGGGCTATAACCTC+AGG | 0.515555 | 1.4:+50264296 | None:intergenic |
| CTTGCTGCTGATGAATCTAC+TGG | 0.520412 | 1.4:-50265544 | MS.gene72417:CDS |
| TCGTGGATTGACAAGGGAGA+TGG | 0.521733 | 1.4:+50264554 | None:intergenic |
| ACAAAGCTCGGACTGTGTGT+TGG | 0.522609 | 1.4:+50264282 | None:intergenic |
| CTCTTACATTCTCTTATGGA+AGG | 0.525023 | 1.4:-50264142 | MS.gene72417:CDS |
| GTGGATGTGTTGAAGAAAGC+TGG | 0.525235 | 1.4:-50264746 | MS.gene72417:CDS |
| TGTGGTTTCTCCATTTGTGC+CGG | 0.528303 | 1.4:+50264679 | None:intergenic |
| CTGAGGCAGTCTAAACAACC+AGG | 0.529230 | 1.4:+50265436 | None:intergenic |
| AGCAAAGTACTCTTAAGGCA+TGG | 0.530894 | 1.4:-50264112 | MS.gene72417:CDS |
| TAAGAGAATGTAAGAGTCCA+AGG | 0.537565 | 1.4:+50264149 | None:intergenic |
| CTCTCCTAAAGTTGCTCCTG+AGG | 0.537898 | 1.4:-50264312 | MS.gene72417:CDS |
| GCAACTCTAGGAACTTATCA+AGG | 0.543212 | 1.4:-50264020 | MS.gene72417:CDS |
| TCAATCCACGAAAACGCCTA+CGG | 0.549910 | 1.4:-50264542 | MS.gene72417:CDS |
| ACTTTAGGAGAGTCTGATCC+TGG | 0.549951 | 1.4:+50264323 | None:intergenic |
| ATTTGTGCCGGCAAGTTCAA+CGG | 0.550481 | 1.4:+50264691 | None:intergenic |
| TTATATTGGCTCTCCCGGAA+AGG | 0.551511 | 1.4:-50265572 | MS.gene72417:CDS |
| AGAGCCAATATAAGCAGCAT+TGG | 0.554374 | 1.4:+50265582 | None:intergenic |
| ACCATTCTCTTGGCATATGA+CGG | 0.555382 | 1.4:+50264505 | None:intergenic |
| GAGCCTGAGATTCTAGTGGA+TGG | 0.555574 | 1.4:-50264467 | MS.gene72417:CDS |
| CCATTTAGCGAACCTTGCAC+CGG | 0.555662 | 1.4:+50264607 | None:intergenic |
| TGCAAGAAGTACTATGAAGC+CGG | 0.557100 | 1.4:-50264626 | MS.gene72417:CDS |
| TCTTTCAAGAGCAAATATGA+AGG | 0.558115 | 1.4:-50266866 | MS.gene72417:intron |
| GAACGGTTCGCAACAAAGCT+CGG | 0.563519 | 1.4:+50264270 | None:intergenic |
| GCAAATTCAGAAGCAACTCT+AGG | 0.563691 | 1.4:-50264032 | MS.gene72417:CDS |
| GTGTATAGGAGTACCCTTTG+TGG | 0.565160 | 1.4:-50264765 | MS.gene72417:intron |
| TATCAAGGTAATGCTAACCT+TGG | 0.568421 | 1.4:-50264005 | MS.gene72417:CDS |
| TGGCGTGCCGTGCTAAAGAT+CGG | 0.577059 | 1.4:-50264587 | MS.gene72417:CDS |
| AATGGAGAAACCACAACTCA+AGG | 0.579845 | 1.4:-50264671 | MS.gene72417:CDS |
| CATATGCCAAGAGAATGGTT+TGG | 0.584136 | 1.4:-50264501 | MS.gene72417:CDS |
| GTCATCCAAACCTTGAGTTG+TGG | 0.586628 | 1.4:+50264661 | None:intergenic |
| AGTACTATGAAGCCGGTGCA+AGG | 0.593122 | 1.4:-50264619 | MS.gene72417:CDS |
| ACTCAAGGTTTGGATGACCT+TGG | 0.593476 | 1.4:-50264656 | MS.gene72417:CDS |
| TTCGCGAAGAGTACGTCTGT+TGG | 0.596179 | 1.4:+50265474 | None:intergenic |
| ACTTCTTGCACCTCTGACCA+AGG | 0.600417 | 1.4:+50264639 | None:intergenic |
| TCCGGGTATCAAGGTTGACA+AGG | 0.600493 | 1.4:-50264717 | MS.gene72417:CDS |
| GTTTGGATGACCTTGGTCAG+AGG | 0.601427 | 1.4:-50264649 | MS.gene72417:CDS |
| AGAATCCATACTACCTGCAG+CGG | 0.606136 | 1.4:+50265375 | None:intergenic |
| AAGCCTAATATGGTTACACC+AGG | 0.609198 | 1.4:-50264341 | MS.gene72417:CDS |
| TCTTACATTCTCTTATGGAA+GGG | 0.615325 | 1.4:-50264141 | MS.gene72417:CDS |
| ATTTGGACCGATCTTTAGCA+CGG | 0.615328 | 1.4:+50264580 | None:intergenic |
| TGTAGAGCCTGAGATTCTAG+TGG | 0.617102 | 1.4:-50264471 | MS.gene72417:CDS |
| CAGTAGATTCATCAGCAGCA+AGG | 0.619396 | 1.4:+50265545 | None:intergenic |
| TTTCTTCAACACATCCACAA+AGG | 0.625245 | 1.4:+50264751 | None:intergenic |
| GTCTGGTGGACAAAGTGAAG+AGG | 0.625664 | 1.4:-50264219 | MS.gene72417:CDS |
| AGTACTCTTAAGGCATGGGG+TGG | 0.629413 | 1.4:-50264107 | MS.gene72417:CDS |
| GAAAACTATAGCTGGAACTG+CGG | 0.632802 | 1.4:+50264244 | None:intergenic |
| GGTTGTTTAGACTGCCTCAG+TGG | 0.642712 | 1.4:-50265433 | MS.gene72417:CDS |
| TACCTTCAAGAAGAACATGA+TGG | 0.642921 | 1.4:+50264372 | None:intergenic |
| CAAAGTACTCTTAAGGCATG+GGG | 0.654273 | 1.4:-50264110 | MS.gene72417:CDS |
| GGTAATGCTAACCTTGGTGA+TGG | 0.655737 | 1.4:-50263999 | MS.gene72417:CDS |
| CCGGGTATCAAGGTTGACAA+GGG | 0.663397 | 1.4:-50264716 | MS.gene72417:CDS |
| TGAGGCAGTCTAAACAACCA+GGG | 0.687038 | 1.4:+50265437 | None:intergenic |
| GCGATTCGCTAGCATCAATG+TGG | 0.695493 | 1.4:-50265509 | MS.gene72417:CDS |
| GAGGCAGTCTAAACAACCAG+GGG | 0.707381 | 1.4:+50265438 | None:intergenic |
| ACTCTGAAGCACCATCACCA+AGG | 0.713624 | 1.4:+50263988 | None:intergenic |
| GGCATAACGAGCTAAACCGT+AGG | 0.727129 | 1.4:+50264526 | None:intergenic |
| CGAACAAGATAACACCACTG+AGG | 0.795503 | 1.4:+50265419 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATAAAAATCAAA+AGG | + | chr1.4:50264448-50264467 | None:intergenic | 10.0% |
| !! | TTAAATAAGTAAATCCAAAA+AGG | + | chr1.4:50265620-50265639 | None:intergenic | 15.0% |
| !!! | ACTTATTTAAAGTAATCTAT+TGG | - | chr1.4:50265630-50265649 | MS.gene72417:intron | 15.0% |
| !!! | ATCTTCTTTATGAAATATTT+TGG | - | chr1.4:50265094-50265113 | MS.gene72417:intron | 15.0% |
| !!! | TATCAGATTAAATTTTCATA+TGG | + | chr1.4:50264844-50264863 | None:intergenic | 15.0% |
| !!! | TTTTAATCTTTCATAGATAT+CGG | - | chr1.4:50265586-50265605 | MS.gene72417:CDS | 15.0% |
| !!! | TTTTTTTCTTTTCGTTTTAT+AGG | - | chr1.4:50264029-50264048 | MS.gene72417:CDS | 15.0% |
| !! | AATAAACTTAAAACAGCTTA+AGG | + | chr1.4:50265702-50265721 | None:intergenic | 20.0% |
| !!! | AAATTTTGAAAGAAAAGACA+TGG | + | chr1.4:50265884-50265903 | None:intergenic | 20.0% |
| !!! | AATGTTTATTTTGAATTAGC+AGG | - | chr1.4:50265533-50265552 | MS.gene72417:CDS | 20.0% |
| !!! | TACTTTGTTTGACAAAATTA+CGG | - | chr1.4:50264668-50264687 | MS.gene72417:CDS | 20.0% |
| !!! | TTCTAAAAGTAGTAAAAAAG+AGG | - | chr1.4:50264350-50264369 | MS.gene72417:CDS | 20.0% |
| ! | AATGCAATGAACAAACTTAA+GGG | - | chr1.4:50266652-50266671 | MS.gene72417:intron | 25.0% |
| ! | AATTAAGATGTTTGACTCTT+TGG | + | chr1.4:50264902-50264921 | None:intergenic | 25.0% |
| ! | AGTAGTAAAAAAGAGGAAAA+AGG | - | chr1.4:50264357-50264376 | MS.gene72417:CDS | 25.0% |
| ! | GAAACATACACTAAGAAATA+AGG | - | chr1.4:50264780-50264799 | MS.gene72417:intron | 25.0% |
| ! | GTTCGATTCATAAAACTAAA+GGG | - | chr1.4:50264802-50264821 | MS.gene72417:intron | 25.0% |
| ! | TAATGCAATGAACAAACTTA+AGG | - | chr1.4:50266651-50266670 | MS.gene72417:intron | 25.0% |
| ! | TCAAGTAAAAATATGTCATG+TGG | - | chr1.4:50264276-50264295 | MS.gene72417:CDS | 25.0% |
| ! | TTCTTAGTGTATGTTTCAAT+TGG | + | chr1.4:50264777-50264796 | None:intergenic | 25.0% |
| !! | AAGTGAGAGAAATGATATTT+TGG | - | chr1.4:50264394-50264413 | MS.gene72417:CDS | 25.0% |
| !! | AATTTTGTACTTACTTCTTG+TGG | - | chr1.4:50265139-50265158 | MS.gene72417:intron | 25.0% |
| !! | ATATAAGCTATAAACCGTTT+TGG | + | chr1.4:50265750-50265769 | None:intergenic | 25.0% |
| !! | TAAGTTTGTTCATTGCATTA+AGG | + | chr1.4:50266651-50266670 | None:intergenic | 25.0% |
| !! | TCTATTTGTTGAAGTTTCTA+AGG | - | chr1.4:50265196-50265215 | MS.gene72417:intron | 25.0% |
| !! | TGAAAAGCTTAACTCAATTT+TGG | - | chr1.4:50265052-50265071 | MS.gene72417:intron | 25.0% |
| !! | TTTTGGCATCAAAATTTTGA+TGG | - | chr1.4:50264411-50264430 | MS.gene72417:CDS | 25.0% |
| !!! | TATTTTGGAAAAAAGTTGCT+AGG | - | chr1.4:50265109-50265128 | MS.gene72417:intron | 25.0% |
| AATCGTTGACATCTAAATCT+AGG | + | chr1.4:50265567-50265586 | None:intergenic | 30.0% | |
| ACAGTTGAGAAAAAAGTTAG+AGG | + | chr1.4:50266048-50266067 | None:intergenic | 30.0% | |
| CATGAATGATCAAGAAACAA+AGG | + | chr1.4:50264064-50264083 | None:intergenic | 30.0% | |
| GGTTCGATTCATAAAACTAA+AGG | - | chr1.4:50264801-50264820 | MS.gene72417:intron | 30.0% | |
| TAAACACTTACGAGACTATT+TGG | - | chr1.4:50265655-50265674 | MS.gene72417:intron | 30.0% | |
| TAAATAAGCGCTTCTCATAT+AGG | + | chr1.4:50265830-50265849 | None:intergenic | 30.0% | |
| TCTTACATTCTCTTATGGAA+GGG | - | chr1.4:50266690-50266709 | MS.gene72417:intron | 30.0% | |
| TCTTTCAAGAGCAAATATGA+AGG | - | chr1.4:50263965-50263984 | MS.gene72417:CDS | 30.0% | |
| TTATTTCCATATGTTCTCCA+GGG | - | chr1.4:50265717-50265736 | MS.gene72417:intron | 30.0% | |
| TTTATTTCCATATGTTCTCC+AGG | - | chr1.4:50265716-50265735 | MS.gene72417:intron | 30.0% | |
| TTTGAAAGAAAAGACATGGA+AGG | + | chr1.4:50265880-50265899 | None:intergenic | 30.0% | |
| ! | ATGTTACACTAGCTTCATTT+AGG | - | chr1.4:50264081-50264100 | MS.gene72417:CDS | 30.0% |
| ! | ATTTTTGCCAAAAATTACCG+TGG | - | chr1.4:50264724-50264743 | MS.gene72417:CDS | 30.0% |
| ! | CAGAACTAGTTGAGTATTTT+GGG | - | chr1.4:50264251-50264270 | MS.gene72417:CDS | 30.0% |
| ! | CTATTTACCACGGTAATTTT+TGG | + | chr1.4:50264734-50264753 | None:intergenic | 30.0% |
| ! | TTCATCATCTAGTGTGTTTT+TGG | - | chr1.4:50263998-50264017 | MS.gene72417:CDS | 30.0% |
| !! | TTTCATAGATATCGGCTTTA+AGG | - | chr1.4:50265594-50265613 | MS.gene72417:CDS | 30.0% |
| !!! | CTTTTTTCTCAACTGTGTAT+AGG | - | chr1.4:50266052-50266071 | MS.gene72417:intron | 30.0% |
| !!! | TACTCTTTTGAAGCCTAATA+TGG | - | chr1.4:50266480-50266499 | MS.gene72417:intron | 30.0% |
| AACCACATTCTATTAGCTAG+TGG | + | chr1.4:50264611-50264630 | None:intergenic | 35.0% | |
| ACACTCTTCTCTATTCATCT+AGG | + | chr1.4:50264173-50264192 | None:intergenic | 35.0% | |
| ATTGAGATGCAAATGCATCA+CGG | + | chr1.4:50265980-50265999 | None:intergenic | 35.0% | |
| CTAATAATCCGTGCAACAAA+CGG | - | chr1.4:50264991-50265010 | MS.gene72417:intron | 35.0% | |
| CTCTTACATTCTCTTATGGA+AGG | - | chr1.4:50266689-50266708 | MS.gene72417:intron | 35.0% | |
| GTTGACATCTAAATCTAGGA+TGG | + | chr1.4:50265563-50265582 | None:intergenic | 35.0% | |
| TAAGAGAATGTAAGAGTCCA+AGG | + | chr1.4:50266685-50266704 | None:intergenic | 35.0% | |
| TAATAATCCGTGCAACAAAC+GGG | - | chr1.4:50264992-50265011 | MS.gene72417:intron | 35.0% | |
| TACCTTCAAGAAGAACATGA+TGG | + | chr1.4:50266462-50266481 | None:intergenic | 35.0% | |
| TATCAAGGTAATGCTAACCT+TGG | - | chr1.4:50266826-50266845 | MS.gene72417:intron | 35.0% | |
| TGATAGTAGATTGCAATCTC+TGG | - | chr1.4:50264859-50264878 | MS.gene72417:intron | 35.0% | |
| TGGACTCTTACATTCTCTTA+TGG | - | chr1.4:50266685-50266704 | MS.gene72417:intron | 35.0% | |
| TTCAGAGTCTCTTCATGTTA+AGG | - | chr1.4:50266858-50266877 | MS.gene72417:intron | 35.0% | |
| TTCTATTAGCAACTAGCAGT+TGG | - | chr1.4:50264629-50264648 | MS.gene72417:CDS | 35.0% | |
| TTCTTCAACACATCCACAAA+GGG | + | chr1.4:50266082-50266101 | None:intergenic | 35.0% | |
| TTTAACAAATTCTCGTCGTG+TGG | - | chr1.4:50265902-50265921 | MS.gene72417:intron | 35.0% | |
| TTTCTTCAACACATCCACAA+AGG | + | chr1.4:50266083-50266102 | None:intergenic | 35.0% | |
| ! | ACTTCAGCAAAGTACTCTTA+AGG | - | chr1.4:50266714-50266733 | MS.gene72417:intron | 35.0% |
| ! | ATTGCCAATGCTGCTTATAT+TGG | - | chr1.4:50265245-50265264 | MS.gene72417:intron | 35.0% |
| ! | CACTAGCTTCATTTAGGTAT+CGG | - | chr1.4:50264087-50264106 | MS.gene72417:CDS | 35.0% |
| ! | GACTGCAAACTTTTATACTG+CGG | - | chr1.4:50264308-50264327 | MS.gene72417:CDS | 35.0% |
| ! | GCAGAACTAGTTGAGTATTT+TGG | - | chr1.4:50264250-50264269 | MS.gene72417:CDS | 35.0% |
| AACTTAAGGGAAAGAAGCCT+TGG | - | chr1.4:50266665-50266684 | MS.gene72417:intron | 40.0% | |
| AAGCCTAATATGGTTACACC+AGG | - | chr1.4:50266490-50266509 | MS.gene72417:intron | 40.0% | |
| AATAATCCGTGCAACAAACG+GGG | - | chr1.4:50264993-50265012 | MS.gene72417:intron | 40.0% | |
| AATGGAGAAACCACAACTCA+AGG | - | chr1.4:50266160-50266179 | MS.gene72417:intron | 40.0% | |
| ACCATTCTCTTGGCATATGA+CGG | + | chr1.4:50266329-50266348 | None:intergenic | 40.0% | |
| AGAAACCACAACTCAAGGTT+TGG | - | chr1.4:50266165-50266184 | MS.gene72417:intron | 40.0% | |
| AGAATCTCAGGCTCTACAAT+TGG | + | chr1.4:50266358-50266377 | None:intergenic | 40.0% | |
| AGAGCCAATATAAGCAGCAT+TGG | + | chr1.4:50265252-50265271 | None:intergenic | 40.0% | |
| ATAACCTCAGGAGCAACTTT+AGG | + | chr1.4:50266526-50266545 | None:intergenic | 40.0% | |
| ATTTGGACCGATCTTTAGCA+CGG | + | chr1.4:50266254-50266273 | None:intergenic | 40.0% | |
| CACCACTAGCTAATAGAATG+TGG | - | chr1.4:50264606-50264625 | MS.gene72417:CDS | 40.0% | |
| CATATGCCAAGAGAATGGTT+TGG | - | chr1.4:50266330-50266349 | MS.gene72417:intron | 40.0% | |
| CCAGACAAGAAAACTATAGC+TGG | + | chr1.4:50266598-50266617 | None:intergenic | 40.0% | |
| CGTTCTTGCAACATGTTACA+AGG | - | chr1.4:50266426-50266445 | MS.gene72417:intron | 40.0% | |
| CTATATCAAAAAACCGCTGC+AGG | - | chr1.4:50265443-50265462 | MS.gene72417:CDS | 40.0% | |
| GAAAACTATAGCTGGAACTG+CGG | + | chr1.4:50266590-50266609 | None:intergenic | 40.0% | |
| GACAAAATTACGGTCGAATG+TGG | - | chr1.4:50264678-50264697 | MS.gene72417:CDS | 40.0% | |
| GACCATCATGTTCTTCTTGA+AGG | - | chr1.4:50266457-50266476 | MS.gene72417:intron | 40.0% | |
| GATCCTGGTGTAACCATATT+AGG | + | chr1.4:50266496-50266515 | None:intergenic | 40.0% | |
| GATGAATCTACTGGCACAAT+TGG | - | chr1.4:50265296-50265315 | MS.gene72417:intron | 40.0% | |
| GCAAATTCAGAAGCAACTCT+AGG | - | chr1.4:50266799-50266818 | MS.gene72417:intron | 40.0% | |
| GGCAGAATCACTATTTACCA+CGG | + | chr1.4:50264744-50264763 | None:intergenic | 40.0% | |
| GTTTCAATTGGCAGCGATTA+TGG | + | chr1.4:50264765-50264784 | None:intergenic | 40.0% | |
| TTGAGATGCAAATGCATCAC+GGG | + | chr1.4:50265979-50265998 | None:intergenic | 40.0% | |
| TTGGAACCAAACCATTCTCT+TGG | + | chr1.4:50266339-50266358 | None:intergenic | 40.0% | |
| ! | AGCAAAGTACTCTTAAGGCA+TGG | - | chr1.4:50266719-50266738 | MS.gene72417:intron | 40.0% |
| ! | ATTTATCCCCGTTTGTTGCA+CGG | + | chr1.4:50265002-50265021 | None:intergenic | 40.0% |
| ! | CAAAGTACTCTTAAGGCATG+GGG | - | chr1.4:50266721-50266740 | MS.gene72417:intron | 40.0% |
| ! | CCAGCTATAGTTTTCTTGTC+TGG | - | chr1.4:50266595-50266614 | MS.gene72417:intron | 40.0% |
| ! | GATGAATAGAGAAGAGTGTG+TGG | - | chr1.4:50264174-50264193 | MS.gene72417:CDS | 40.0% |
| ! | GCAAAGTACTCTTAAGGCAT+GGG | - | chr1.4:50266720-50266739 | MS.gene72417:intron | 40.0% |
| ! | GCAACTCTAGGAACTTATCA+AGG | - | chr1.4:50266811-50266830 | MS.gene72417:intron | 40.0% |
| ! | GCTATAGTTTTCTTGTCTGG+TGG | - | chr1.4:50266598-50266617 | MS.gene72417:intron | 40.0% |
| !! | AGCAAGATTCTAGTCTTGCT+TGG | - | chr1.4:50264574-50264593 | MS.gene72417:CDS | 40.0% |
| !! | ATTCTAGTCTTGCTTGGGAT+TGG | - | chr1.4:50264580-50264599 | MS.gene72417:CDS | 40.0% |
| !! | GCAAGATTCTAGTCTTGCTT+GGG | - | chr1.4:50264575-50264594 | MS.gene72417:CDS | 40.0% |
| !! | TGCAAGAAGTACTATGAAGC+CGG | - | chr1.4:50266205-50266224 | MS.gene72417:intron | 40.0% |
| !!! | TATCGGCTTTAAGGCCTTTT+TGG | - | chr1.4:50265603-50265622 | MS.gene72417:intron | 40.0% |
| AAAAACCGCTGCAGGTAGTA+TGG | - | chr1.4:50265451-50265470 | MS.gene72417:CDS | 45.0% | |
| AAGAAAGCTGGAGTTCTTCC+GGG | - | chr1.4:50266097-50266116 | MS.gene72417:intron | 45.0% | |
| ACTCAAGGTTTGGATGACCT+TGG | - | chr1.4:50266175-50266194 | MS.gene72417:intron | 45.0% | |
| AGAATCCATACTACCTGCAG+CGG | + | chr1.4:50265459-50265478 | None:intergenic | 45.0% | |
| AGCAATGCAGCTTGAGCTTT+AGG | + | chr1.4:50266766-50266785 | None:intergenic | 45.0% | |
| ATGCTACCCTGGAGAACATA+TGG | + | chr1.4:50265726-50265745 | None:intergenic | 45.0% | |
| CAGTAGATTCATCAGCAGCA+AGG | + | chr1.4:50265289-50265308 | None:intergenic | 45.0% | |
| CGAACAAGATAACACCACTG+AGG | + | chr1.4:50265415-50265434 | None:intergenic | 45.0% | |
| CGTGTGGTAGATGATTGATG+AGG | - | chr1.4:50265918-50265937 | MS.gene72417:intron | 45.0% | |
| CTCAAGCTGCATTGCTTGTT+AGG | - | chr1.4:50266770-50266789 | MS.gene72417:intron | 45.0% | |
| CTTGCTGCTGATGAATCTAC+TGG | - | chr1.4:50265287-50265306 | MS.gene72417:intron | 45.0% | |
| GAAGAAAGCTGGAGTTCTTC+CGG | - | chr1.4:50266096-50266115 | MS.gene72417:intron | 45.0% | |
| GACAAGGGAGATGGTTCATT+TGG | + | chr1.4:50266271-50266290 | None:intergenic | 45.0% | |
| GATCCATCCACTAGAATCTC+AGG | + | chr1.4:50266370-50266389 | None:intergenic | 45.0% | |
| GCAATCTCTGGTGATACTTG+AGG | - | chr1.4:50264871-50264890 | MS.gene72417:intron | 45.0% | |
| GGTAATGCTAACCTTGGTGA+TGG | - | chr1.4:50266832-50266851 | MS.gene72417:intron | 45.0% | |
| GTGGATGTGTTGAAGAAAGC+TGG | - | chr1.4:50266085-50266104 | MS.gene72417:intron | 45.0% | |
| TAGATGATTGATGAGGTCCG+AGG | - | chr1.4:50265925-50265944 | MS.gene72417:intron | 45.0% | |
| TCAATCCACGAAAACGCCTA+CGG | - | chr1.4:50266289-50266308 | MS.gene72417:intron | 45.0% | |
| TCCAGGGTAGCATACCAAAA+CGG | - | chr1.4:50265733-50265752 | MS.gene72417:intron | 45.0% | |
| TGAGGCAGTCTAAACAACCA+GGG | + | chr1.4:50265397-50265416 | None:intergenic | 45.0% | |
| TGTAGAGCCTGAGATTCTAG+TGG | - | chr1.4:50266360-50266379 | MS.gene72417:intron | 45.0% | |
| TGTGGTTTCTCCATTTGTGC+CGG | + | chr1.4:50266155-50266174 | None:intergenic | 45.0% | |
| ! | ACTTTAGGAGAGTCTGATCC+TGG | + | chr1.4:50266511-50266530 | None:intergenic | 45.0% |
| ! | ATTTGTGCCGGCAAGTTCAA+CGG | + | chr1.4:50266143-50266162 | None:intergenic | 45.0% |
| ! | GTCATCCAAACCTTGAGTTG+TGG | + | chr1.4:50266173-50266192 | None:intergenic | 45.0% |
| ! | TTCCAACTAAGTTGACGCCT+CGG | + | chr1.4:50265945-50265964 | None:intergenic | 45.0% |
| !! | GCGTTTTCGTGGATTGACAA+GGG | + | chr1.4:50266286-50266305 | None:intergenic | 45.0% |
| !! | GTGTATAGGAGTACCCTTTG+TGG | - | chr1.4:50266066-50266085 | MS.gene72417:intron | 45.0% |
| !! | TATATTGGCTCTCCCGGAAA+GGG | - | chr1.4:50265260-50265279 | MS.gene72417:intron | 45.0% |
| !! | TTATATTGGCTCTCCCGGAA+AGG | - | chr1.4:50265259-50265278 | MS.gene72417:intron | 45.0% |
| AAGGGAACCGTTGAACTTGC+CGG | - | chr1.4:50266133-50266152 | MS.gene72417:intron | 50.0% | |
| ACAAAGCTCGGACTGTGTGT+TGG | + | chr1.4:50266552-50266571 | None:intergenic | 50.0% | |
| ACTTCTTGCACCTCTGACCA+AGG | + | chr1.4:50266195-50266214 | None:intergenic | 50.0% | |
| AGCAGCAAGGATACCCTTTC+CGG | + | chr1.4:50265276-50265295 | None:intergenic | 50.0% | |
| AGTACTATGAAGCCGGTGCA+AGG | - | chr1.4:50266212-50266231 | MS.gene72417:intron | 50.0% | |
| AGTACTCTTAAGGCATGGGG+TGG | - | chr1.4:50266724-50266743 | MS.gene72417:intron | 50.0% | |
| CAAAGCTCGGACTGTGTGTT+GGG | + | chr1.4:50266551-50266570 | None:intergenic | 50.0% | |
| CCATTTAGCGAACCTTGCAC+CGG | + | chr1.4:50266227-50266246 | None:intergenic | 50.0% | |
| CCCTTGTCAACCTTGATACC+CGG | + | chr1.4:50266118-50266137 | None:intergenic | 50.0% | |
| CCGGGTATCAAGGTTGACAA+GGG | - | chr1.4:50266115-50266134 | MS.gene72417:intron | 50.0% | |
| CTCTCCTAAAGTTGCTCCTG+AGG | - | chr1.4:50266519-50266538 | MS.gene72417:intron | 50.0% | |
| CTGAGGCAGTCTAAACAACC+AGG | + | chr1.4:50265398-50265417 | None:intergenic | 50.0% | |
| GAACGGTTCGCAACAAAGCT+CGG | + | chr1.4:50266564-50266583 | None:intergenic | 50.0% | |
| GAGCCTGAGATTCTAGTGGA+TGG | - | chr1.4:50266364-50266383 | MS.gene72417:intron | 50.0% | |
| GAGGCAGTCTAAACAACCAG+GGG | + | chr1.4:50265396-50265415 | None:intergenic | 50.0% | |
| GATGCAAATGCATCACGGGA+AGG | + | chr1.4:50265975-50265994 | None:intergenic | 50.0% | |
| GCCGTCATATGCCAAGAGAA+TGG | - | chr1.4:50266325-50266344 | MS.gene72417:intron | 50.0% | |
| GCGATTCGCTAGCATCAATG+TGG | - | chr1.4:50265322-50265341 | MS.gene72417:intron | 50.0% | |
| GGCATAACGAGCTAAACCGT+AGG | + | chr1.4:50266308-50266327 | None:intergenic | 50.0% | |
| GGTTGTTTAGACTGCCTCAG+TGG | - | chr1.4:50265398-50265417 | MS.gene72417:CDS | 50.0% | |
| GTGTGTTGGGCTATAACCTC+AGG | + | chr1.4:50266538-50266557 | None:intergenic | 50.0% | |
| GTTGAACTTGCCGGCACAAA+TGG | - | chr1.4:50266142-50266161 | MS.gene72417:intron | 50.0% | |
| GTTTGGATGACCTTGGTCAG+AGG | - | chr1.4:50266182-50266201 | MS.gene72417:intron | 50.0% | |
| TCCGGGTATCAAGGTTGACA+AGG | - | chr1.4:50266114-50266133 | MS.gene72417:intron | 50.0% | |
| TGGAGTTCTTCCGGGTATCA+AGG | - | chr1.4:50266105-50266124 | MS.gene72417:intron | 50.0% | |
| ! | CTAAACCGTAGGCGTTTTCG+TGG | + | chr1.4:50266297-50266316 | None:intergenic | 50.0% |
| ! | GTCTGGTGGACAAAGTGAAG+AGG | - | chr1.4:50266612-50266631 | MS.gene72417:intron | 50.0% |
| ! | TCGTGGATTGACAAGGGAGA+TGG | + | chr1.4:50266280-50266299 | None:intergenic | 50.0% |
| ! | TTCGCGAAGAGTACGTCTGT+TGG | + | chr1.4:50265360-50265379 | None:intergenic | 50.0% |
| !! | ACCGTTTTGGTATGCTACCC+TGG | + | chr1.4:50265737-50265756 | None:intergenic | 50.0% |
| !! | ACTCTGAAGCACCATCACCA+AGG | + | chr1.4:50266846-50266865 | None:intergenic | 50.0% |
| !! | GCTGCTTATATTGGCTCTCC+CGG | - | chr1.4:50265254-50265273 | MS.gene72417:intron | 50.0% |
| !! | GGCGTTTTCGTGGATTGACA+AGG | + | chr1.4:50266287-50266306 | None:intergenic | 50.0% |
| ACTATAGCTGGAACTGCGGC+AGG | + | chr1.4:50266586-50266605 | None:intergenic | 55.0% | |
| CCGGTGCAAGGTTCGCTAAA+TGG | - | chr1.4:50266224-50266243 | MS.gene72417:intron | 55.0% | |
| GAACTCTTGTTCACTGCCCC+TGG | - | chr1.4:50265377-50265396 | MS.gene72417:intron | 55.0% | |
| GCAGCAAGGATACCCTTTCC+GGG | + | chr1.4:50265275-50265294 | None:intergenic | 55.0% | |
| TGGCGTGCCGTGCTAAAGAT+CGG | - | chr1.4:50266244-50266263 | MS.gene72417:intron | 55.0% | |
| ! | GTCCGAGGCGTCAACTTAGT+TGG | - | chr1.4:50265940-50265959 | MS.gene72417:intron | 55.0% |
| AGCTGGAACTGCGGCAGGAA+CGG | + | chr1.4:50266581-50266600 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50263959 | 50266894 | 50263959 | ID=MS.gene72417 |
| chr1.4 | mRNA | 50263959 | 50266894 | 50263959 | ID=MS.gene72417.t1;Parent=MS.gene72417 |
| chr1.4 | exon | 50266867 | 50266894 | 50266867 | ID=MS.gene72417.t1.exon1;Parent=MS.gene72417.t1 |
| chr1.4 | CDS | 50266867 | 50266894 | 50266867 | ID=cds.MS.gene72417.t1;Parent=MS.gene72417.t1 |
| chr1.4 | exon | 50265389 | 50265616 | 50265389 | ID=MS.gene72417.t1.exon2;Parent=MS.gene72417.t1 |
| chr1.4 | CDS | 50265389 | 50265616 | 50265389 | ID=cds.MS.gene72417.t1;Parent=MS.gene72417.t1 |
| chr1.4 | exon | 50263959 | 50264779 | 50263959 | ID=MS.gene72417.t1.exon3;Parent=MS.gene72417.t1 |
| chr1.4 | CDS | 50263959 | 50264779 | 50263959 | ID=cds.MS.gene72417.t1;Parent=MS.gene72417.t1 |
| Gene Sequence |
| Protein sequence |
