Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72976.t1 | XP_013467919.1 | 100 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 3.00E-82 | 314.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72976.t1 | Q9SVD7 | 92.5 | 146 | 11 | 0 | 1 | 146 | 1 | 146 | 2.6e-79 | 295.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72976.t1 | B7FNB3 | 100.0 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 2.1e-82 | 314.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052056 | MS.gene72976 | 0.81009 | 1.37E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene72976 | 0.808299 | 3.32E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29973 | MS.gene72976 | PPI |
| MS.gene020503 | MS.gene72976 | PPI |
| MS.gene015674 | MS.gene72976 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72976.t1 | MTR_1g058100 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 1.11e-109 | 308 |
| MS.gene72976.t1 | MTR_1g058100 | 98.649 | 148 | 0 | 1 | 1 | 146 | 1 | 148 | 6.82e-108 | 303 |
| MS.gene72976.t1 | MTR_1g058100 | 87.671 | 146 | 0 | 1 | 1 | 146 | 1 | 128 | 3.64e-90 | 258 |
| MS.gene72976.t1 | MTR_8g105010 | 80.142 | 141 | 28 | 0 | 3 | 143 | 1 | 141 | 5.09e-84 | 243 |
| MS.gene72976.t1 | MTR_8g105010 | 80.000 | 140 | 28 | 0 | 3 | 142 | 1 | 140 | 6.86e-83 | 241 |
| MS.gene72976.t1 | MTR_1g058100 | 99.020 | 102 | 1 | 0 | 1 | 102 | 1 | 102 | 6.96e-73 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72976.t1 | AT3G52560 | 92.466 | 146 | 11 | 0 | 1 | 146 | 1 | 146 | 2.04e-102 | 289 |
| MS.gene72976.t1 | AT2G36060 | 93.151 | 146 | 9 | 1 | 1 | 146 | 1 | 145 | 6.19e-102 | 288 |
| MS.gene72976.t1 | AT3G52560 | 91.837 | 147 | 11 | 1 | 1 | 146 | 1 | 147 | 1.04e-100 | 285 |
| MS.gene72976.t1 | AT2G36060 | 92.517 | 147 | 9 | 2 | 1 | 146 | 1 | 146 | 3.26e-100 | 284 |
| MS.gene72976.t1 | AT2G36060 | 92.466 | 146 | 9 | 2 | 1 | 146 | 1 | 144 | 1.80e-99 | 282 |
| MS.gene72976.t1 | AT3G52560 | 82.317 | 164 | 11 | 1 | 1 | 146 | 1 | 164 | 3.61e-98 | 279 |
| MS.gene72976.t1 | AT1G23260 | 75.177 | 141 | 35 | 0 | 3 | 143 | 1 | 141 | 6.55e-80 | 233 |
| MS.gene72976.t1 | AT1G70660 | 73.239 | 142 | 38 | 0 | 3 | 144 | 1 | 142 | 2.71e-78 | 228 |
| MS.gene72976.t1 | AT1G70660 | 73.239 | 142 | 38 | 0 | 3 | 144 | 1 | 142 | 4.98e-78 | 228 |
| MS.gene72976.t1 | AT3G52560 | 90.000 | 110 | 10 | 1 | 38 | 146 | 1 | 110 | 2.16e-73 | 215 |
| MS.gene72976.t1 | AT1G70650 | 73.529 | 136 | 36 | 0 | 8 | 143 | 442 | 577 | 3.88e-71 | 224 |
| MS.gene72976.t1 | AT1G23260 | 72.642 | 106 | 29 | 0 | 38 | 143 | 1 | 106 | 1.19e-57 | 176 |
Find 46 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCCATTTCTTTCTTCAGC+TGG | 0.199609 | 1.1:+45211276 | None:intergenic |
| CAGGTTGAACCAAAGAAATT+TGG | 0.239713 | 1.1:-45211347 | MS.gene72976:CDS |
| AATTTGGGCTTCTTGCAAAT+TGG | 0.294147 | 1.1:-45211331 | MS.gene72976:CDS |
| GCAAGAAGCCCAAATTTCTT+TGG | 0.297912 | 1.1:+45211338 | None:intergenic |
| TGCTAAAAGTAAGTTCCTTC+TGG | 0.317643 | 1.1:+45211224 | None:intergenic |
| TCCAAGGAACTTCAGATTGC+TGG | 0.331042 | 1.1:-45212419 | MS.gene72976:CDS |
| AGAGAAATACTTACATTATG+AGG | 0.334105 | 1.1:+45212289 | None:intergenic |
| TCTTGGACTGGCACCATCAT+TGG | 0.337902 | 1.1:-45212313 | MS.gene72976:CDS |
| CTGATACCACGCCAGTTTCA+TGG | 0.343773 | 1.1:+45211531 | None:intergenic |
| CTGGAGGCTGGACAAGCTTC+CGG | 0.358439 | 1.1:+45211243 | None:intergenic |
| AGGTTGAACCAAAGAAATTT+GGG | 0.360917 | 1.1:-45211346 | MS.gene72976:CDS |
| GAGCTTGAACGAGGTGAAAA+AGG | 0.363928 | 1.1:-45212394 | MS.gene72976:CDS |
| TGCCATTTCTTTCTTCAGCT+GGG | 0.392353 | 1.1:+45211277 | None:intergenic |
| ATGACATTTACATGCGCTCT+TGG | 0.418963 | 1.1:-45212330 | MS.gene72976:CDS |
| AAATGGCAGCCCCTCATAAC+CGG | 0.419954 | 1.1:-45211262 | MS.gene72976:CDS |
| TCCATGACGCTTGGCTCAGC+CGG | 0.429765 | 1.1:-45213601 | MS.gene72976:CDS |
| ATTTACATGCGCTCTTGGAC+TGG | 0.438813 | 1.1:-45212325 | MS.gene72976:CDS |
| TGGACAAGCTTCCGGTTATG+AGG | 0.443651 | 1.1:+45211251 | None:intergenic |
| AGTAAGTTCCTTCTGGAGGC+TGG | 0.451073 | 1.1:+45211231 | None:intergenic |
| TCCAGCAATCTGAAGTTCCT+TGG | 0.453074 | 1.1:+45212418 | None:intergenic |
| CAGAAAAGCCGCCAAGTGTT+CGG | 0.455334 | 1.1:-45211586 | MS.gene72976:CDS |
| ACTTGTGTTAACCATGAAAC+TGG | 0.470899 | 1.1:-45211542 | MS.gene72976:CDS |
| CTAACCGACGACACTGGATC+CGG | 0.502436 | 1.1:+45213582 | None:intergenic |
| CGTGAATGAAACCGAACACT+TGG | 0.519764 | 1.1:+45211575 | None:intergenic |
| GGACAAGCTTCCGGTTATGA+GGG | 0.527492 | 1.1:+45211252 | None:intergenic |
| TACATTATGAGGGCCAATGA+TGG | 0.529713 | 1.1:+45212300 | None:intergenic |
| GAATGAAACCGAACACTTGG+CGG | 0.532883 | 1.1:+45211578 | None:intergenic |
| TCCGGCTGAGCCAAGCGTCA+TGG | 0.534232 | 1.1:+45213600 | None:intergenic |
| CAAAATCCATCCATGACGCT+TGG | 0.537360 | 1.1:-45213610 | None:intergenic |
| GACCCAGCTGAAGAAAGAAA+TGG | 0.541436 | 1.1:-45211279 | MS.gene72976:CDS |
| GGCGATGGCACTGTTAGCTA+TGG | 0.542566 | 1.1:-45212367 | MS.gene72976:CDS |
| GAGAAATACTTACATTATGA+GGG | 0.550807 | 1.1:+45212290 | None:intergenic |
| TGGTAACTAACCGACGACAC+TGG | 0.573621 | 1.1:+45213576 | None:intergenic |
| TACTTTCAGACTGTACATGA+AGG | 0.578155 | 1.1:-45211650 | MS.gene72976:intron |
| GTTAGCTATGGAATGGATGA+TGG | 0.588764 | 1.1:-45212355 | MS.gene72976:CDS |
| TGCGCTTCAATGTAGTTCCA+AGG | 0.600751 | 1.1:-45212435 | MS.gene72976:intron |
| AAGCTTGTCCAGCCTCCAGA+AGG | 0.603455 | 1.1:-45211239 | MS.gene72976:CDS |
| AAGGAACTTCAGATTGCTGG+AGG | 0.606974 | 1.1:-45212416 | MS.gene72976:CDS |
| GACAAGCTTCCGGTTATGAG+GGG | 0.622492 | 1.1:+45211253 | None:intergenic |
| TGGCACTGTTAGCTATGGAA+TGG | 0.624959 | 1.1:-45212362 | MS.gene72976:CDS |
| TCAGCCGGATCCAGTGTCGT+CGG | 0.640126 | 1.1:-45213586 | MS.gene72976:intron |
| TTGCTGGAGGAGCTTGAACG+AGG | 0.667991 | 1.1:-45212403 | MS.gene72976:CDS |
| TAAAAGTAAGTTCCTTCTGG+AGG | 0.670760 | 1.1:+45211227 | None:intergenic |
| TTGGCAAAGAGAGTACAGCA+TGG | 0.708361 | 1.1:-45211312 | MS.gene72976:CDS |
| TGTTAACCATGAAACTGGCG+TGG | 0.731270 | 1.1:-45211537 | MS.gene72976:intron |
| GCAAAGAGAGTACAGCATGG+AGG | 0.733074 | 1.1:-45211309 | MS.gene72976:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAGAAATATGAAATAT+TGG | - | chr1.1:45213034-45213053 | MS.gene72976:intron | 15.0% |
| !! | ATATACTACAAATTTAAGTA+TGG | + | chr1.1:45212308-45212327 | None:intergenic | 15.0% |
| !! | TAAAAAGAAAATTGGTAAAA+TGG | - | chr1.1:45211916-45211935 | MS.gene72976:intron | 15.0% |
| !! | TATACTACAAATTTAAGTAT+GGG | + | chr1.1:45212307-45212326 | None:intergenic | 15.0% |
| !! | TGATAGTTTAAAAAGAAAAT+TGG | - | chr1.1:45211908-45211927 | MS.gene72976:intron | 15.0% |
| !!! | ATGTAATTGTTGTTAATTTT+GGG | - | chr1.1:45211412-45211431 | MS.gene72976:intron | 15.0% |
| !!! | TATGTAATTGTTGTTAATTT+TGG | - | chr1.1:45211411-45211430 | MS.gene72976:intron | 15.0% |
| !! | AATCAAGATTTATATGAAAC+AGG | - | chr1.1:45213458-45213477 | MS.gene72976:intron | 20.0% |
| !! | CTGTAATTGAATTATAATTC+TGG | - | chr1.1:45211972-45211991 | MS.gene72976:intron | 20.0% |
| !!! | TGTTTTTTTTTTTTTACCGA+TGG | - | chr1.1:45211443-45211462 | MS.gene72976:intron | 20.0% |
| ! | AAAGAAAATTGGTAAAATGG+TGG | - | chr1.1:45211919-45211938 | MS.gene72976:intron | 25.0% |
| ! | AAGAAAATTGGTAAAATGGT+GGG | - | chr1.1:45211920-45211939 | MS.gene72976:intron | 25.0% |
| ! | AGAGAAATACTTACATTATG+AGG | + | chr1.1:45212538-45212557 | None:intergenic | 25.0% |
| ! | ATATGAAATATTGGTGTATC+TGG | - | chr1.1:45213043-45213062 | MS.gene72976:intron | 25.0% |
| ! | ATGATCGAACATTTCAATTA+AGG | + | chr1.1:45211569-45211588 | None:intergenic | 25.0% |
| ! | GAGAAATACTTACATTATGA+GGG | + | chr1.1:45212537-45212556 | None:intergenic | 25.0% |
| ! | TGTTTACTTGTGAATGTAAA+AGG | - | chr1.1:45212070-45212089 | MS.gene72976:intron | 25.0% |
| ! | TTATATTGATGTCAAAGTGT+CGG | + | chr1.1:45211725-45211744 | None:intergenic | 25.0% |
| !! | AAAACTACATCGATGATTTT+AGG | + | chr1.1:45211382-45211401 | None:intergenic | 25.0% |
| !! | ATTGAAATGTTCGATCATTT+TGG | - | chr1.1:45211571-45211590 | MS.gene72976:CDS | 25.0% |
| !!! | TAAACTGGTTCTATCAAATT+AGG | + | chr1.1:45212654-45212673 | None:intergenic | 25.0% |
| !!! | TTTTTAGTAGTTTCTTGTTG+AGG | - | chr1.1:45211653-45211672 | MS.gene72976:intron | 25.0% |
| !!! | TTTTTTTACCGATGGAATTT+TGG | - | chr1.1:45211451-45211470 | MS.gene72976:intron | 25.0% |
| AATGAATGAATGTTACTGCA+AGG | - | chr1.1:45211761-45211780 | MS.gene72976:intron | 30.0% | |
| AGGTTGAACCAAAGAAATTT+GGG | - | chr1.1:45213478-45213497 | MS.gene72976:intron | 30.0% | |
| ATATTACGAACACCTAACAA+TGG | + | chr1.1:45212576-45212595 | None:intergenic | 30.0% | |
| ATTACAGAAAACTTACGCAA+AGG | + | chr1.1:45211959-45211978 | None:intergenic | 30.0% | |
| ATTCGAAATCCTAAAACTCA+AGG | + | chr1.1:45212196-45212215 | None:intergenic | 30.0% | |
| CATGAACACTTCTTACTTAT+TGG | - | chr1.1:45212936-45212955 | MS.gene72976:intron | 30.0% | |
| GATTACATCTCTGATAACAA+TGG | + | chr1.1:45213442-45213461 | None:intergenic | 30.0% | |
| TTCGAAATCCTAAAACTCAA+GGG | + | chr1.1:45212195-45212214 | None:intergenic | 30.0% | |
| TTTCAAATATGTATTGCCTC+AGG | + | chr1.1:45212040-45212059 | None:intergenic | 30.0% | |
| TTTGATAGAACCAGTTTATG+TGG | - | chr1.1:45212656-45212675 | MS.gene72976:intron | 30.0% | |
| ! | CGCATAAACTACAATTTTCA+AGG | + | chr1.1:45212747-45212766 | None:intergenic | 30.0% |
| !!! | GAGTTTTAGGATTTCGAATT+GGG | - | chr1.1:45212197-45212216 | MS.gene72976:intron | 30.0% |
| !!! | TGAGTTTTAGGATTTCGAAT+TGG | - | chr1.1:45212196-45212215 | MS.gene72976:intron | 30.0% |
| AAAACGACGAAGAGTTAGAT+TGG | + | chr1.1:45211271-45211290 | None:intergenic | 35.0% | |
| AATTGGGTGTGGTTAAAACA+TGG | - | chr1.1:45212213-45212232 | MS.gene72976:intron | 35.0% | |
| AATTTGGGCTTCTTGCAAAT+TGG | - | chr1.1:45213493-45213512 | MS.gene72976:intron | 35.0% | |
| ACTTGTGTTAACCATGAAAC+TGG | - | chr1.1:45213282-45213301 | MS.gene72976:intron | 35.0% | |
| ATGAATGTTACTGCAAGGTT+TGG | - | chr1.1:45211766-45211785 | MS.gene72976:intron | 35.0% | |
| CAAGAACTCAAAAAACATGC+CGG | + | chr1.1:45212781-45212800 | None:intergenic | 35.0% | |
| CTACATATGTGTTTATCCTG+AGG | - | chr1.1:45212021-45212040 | MS.gene72976:intron | 35.0% | |
| GTGGTTAAAACATGGAGAAA+GGG | - | chr1.1:45212221-45212240 | MS.gene72976:intron | 35.0% | |
| TAAAAGTAAGTTCCTTCTGG+AGG | + | chr1.1:45213600-45213619 | None:intergenic | 35.0% | |
| TACTTTCAGACTGTACATGA+AGG | - | chr1.1:45213174-45213193 | MS.gene72976:intron | 35.0% | |
| TATCCAACTTCCACATAAAC+TGG | + | chr1.1:45212669-45212688 | None:intergenic | 35.0% | |
| TATCCGTACTTCAGAATATC+CGG | - | chr1.1:45211855-45211874 | MS.gene72976:intron | 35.0% | |
| TGTGGTTAAAACATGGAGAA+AGG | - | chr1.1:45212220-45212239 | MS.gene72976:intron | 35.0% | |
| ! | ATTCTGGTTGTTCTTGTTTC+TGG | - | chr1.1:45211988-45212007 | MS.gene72976:intron | 35.0% |
| ! | CAGGTTGAACCAAAGAAATT+TGG | - | chr1.1:45213477-45213496 | MS.gene72976:intron | 35.0% |
| ! | CTCTGATAACAATGGATTCA+AGG | + | chr1.1:45213434-45213453 | None:intergenic | 35.0% |
| ! | GATGATGATATGAAAGCATG+TGG | + | chr1.1:45213328-45213347 | None:intergenic | 35.0% |
| ! | GTATCTGGAATCTGAAAGTT+CGG | - | chr1.1:45213058-45213077 | MS.gene72976:intron | 35.0% |
| ! | TCATTTTGTGCGTACTTAAC+AGG | - | chr1.1:45213115-45213134 | MS.gene72976:intron | 35.0% |
| ! | TTACCGATGGAATTTTGGAT+CGG | - | chr1.1:45211456-45211475 | MS.gene72976:intron | 35.0% |
| ! | TTCGAGCTGTGAATTTTGTT+CGG | - | chr1.1:45211489-45211508 | MS.gene72976:intron | 35.0% |
| ! | TTTATGCGAAGTGTTTACAC+CGG | - | chr1.1:45212759-45212778 | MS.gene72976:intron | 35.0% |
| !! | AACACAATCTCTCTGCTTTT+TGG | - | chr1.1:45213402-45213421 | MS.gene72976:intron | 35.0% |
| !! | CATCGATGATTTTAGGTCAA+CGG | + | chr1.1:45211375-45211394 | None:intergenic | 35.0% |
| AAATCCTAAAACTCAAGGGC+CGG | + | chr1.1:45212191-45212210 | None:intergenic | 40.0% | |
| AAGCGTGTCAAACACTTTGA+CGG | - | chr1.1:45211817-45211836 | MS.gene72976:intron | 40.0% | |
| AATCACACTTATCTCGTAGC+CGG | + | chr1.1:45211877-45211896 | None:intergenic | 40.0% | |
| ACTTCTCTGCATCCATTGTT+AGG | - | chr1.1:45212561-45212580 | MS.gene72976:intron | 40.0% | |
| ATGACATTTACATGCGCTCT+TGG | - | chr1.1:45212494-45212513 | MS.gene72976:intron | 40.0% | |
| CTGTATTTGCACATGAACAC+TGG | - | chr1.1:45212844-45212863 | MS.gene72976:intron | 40.0% | |
| GAACCAGTTTATGTGGAAGT+TGG | - | chr1.1:45212663-45212682 | MS.gene72976:intron | 40.0% | |
| GCAAGAAGCCCAAATTTCTT+TGG | + | chr1.1:45213489-45213508 | None:intergenic | 40.0% | |
| GTTAGCTATGGAATGGATGA+TGG | - | chr1.1:45212469-45212488 | MS.gene72976:intron | 40.0% | |
| TACATTATGAGGGCCAATGA+TGG | + | chr1.1:45212527-45212546 | None:intergenic | 40.0% | |
| TCACCGATCCAAAATTCCAT+CGG | + | chr1.1:45211462-45211481 | None:intergenic | 40.0% | |
| TGTTTGACACGCTTCAGAAT+CGG | + | chr1.1:45211811-45211830 | None:intergenic | 40.0% | |
| TTAGGATTTCGAATTGGGTG+TGG | - | chr1.1:45212202-45212221 | MS.gene72976:intron | 40.0% | |
| ! | GAACGAGGTGAAAAAGGTAT+TGG | - | chr1.1:45212436-45212455 | MS.gene72976:intron | 40.0% |
| ! | GTACTTAACAGGTGGTTTTC+AGG | - | chr1.1:45213126-45213145 | MS.gene72976:intron | 40.0% |
| ! | TATGTTCTGTTGCTTCAAGC+TGG | + | chr1.1:45212709-45212728 | None:intergenic | 40.0% |
| ! | TGCCATTTCTTTCTTCAGCT+GGG | + | chr1.1:45213550-45213569 | None:intergenic | 40.0% |
| ! | TTTTGTGCGTACTTAACAGG+TGG | - | chr1.1:45213118-45213137 | MS.gene72976:intron | 40.0% |
| !! | TAGCCGGATATTCTGAAGTA+CGG | + | chr1.1:45211861-45211880 | None:intergenic | 40.0% |
| AAGGAACTTCAGATTGCTGG+AGG | - | chr1.1:45212408-45212427 | MS.gene72976:CDS | 45.0% | |
| AAGTACGAGTGCACTTGTTC+CGG | - | chr1.1:45212169-45212188 | MS.gene72976:intron | 45.0% | |
| ATTTACATGCGCTCTTGGAC+TGG | - | chr1.1:45212499-45212518 | MS.gene72976:intron | 45.0% | |
| CATATGCCCTTCCTATGTTC+TGG | - | chr1.1:45212979-45212998 | MS.gene72976:intron | 45.0% | |
| CGTGAATGAAACCGAACACT+TGG | + | chr1.1:45213252-45213271 | None:intergenic | 45.0% | |
| GAATGAAACCGAACACTTGG+CGG | + | chr1.1:45213249-45213268 | None:intergenic | 45.0% | |
| GACCCAGCTGAAGAAAGAAA+TGG | - | chr1.1:45213545-45213564 | MS.gene72976:intron | 45.0% | |
| GAGCTTGAACGAGGTGAAAA+AGG | - | chr1.1:45212430-45212449 | MS.gene72976:intron | 45.0% | |
| GCTCACAAGCAACTAAACAC+AGG | + | chr1.1:45212816-45212835 | None:intergenic | 45.0% | |
| TCCAAGGAACTTCAGATTGC+TGG | - | chr1.1:45212405-45212424 | MS.gene72976:CDS | 45.0% | |
| TGCGCTTCAATGTAGTTCCA+AGG | - | chr1.1:45212389-45212408 | MS.gene72976:CDS | 45.0% | |
| TGGCACTGTTAGCTATGGAA+TGG | - | chr1.1:45212462-45212481 | MS.gene72976:intron | 45.0% | |
| TGTTAACCATGAAACTGGCG+TGG | - | chr1.1:45213287-45213306 | MS.gene72976:intron | 45.0% | |
| ! | CTGCCATTTCTTTCTTCAGC+TGG | + | chr1.1:45213551-45213570 | None:intergenic | 45.0% |
| ! | TCCAGCAATCTGAAGTTCCT+TGG | + | chr1.1:45212409-45212428 | None:intergenic | 45.0% |
| ! | TTGGCAAAGAGAGTACAGCA+TGG | - | chr1.1:45213512-45213531 | MS.gene72976:intron | 45.0% |
| !! | ACTGCAAGGTTTGGTGTAGT+TGG | - | chr1.1:45211775-45211794 | MS.gene72976:intron | 45.0% |
| !! | GGTGAAAAAGGTATTGGCGA+TGG | - | chr1.1:45212442-45212461 | MS.gene72976:intron | 45.0% |
| !! | GGTTTGGTGTAGTTGGTGTT+AGG | - | chr1.1:45211782-45211801 | MS.gene72976:intron | 45.0% |
| AAATGGCAGCCCCTCATAAC+CGG | - | chr1.1:45213562-45213581 | MS.gene72976:intron | 50.0% | |
| ATGCCCTTCCTATGTTCTGG+CGG | - | chr1.1:45212982-45213001 | MS.gene72976:intron | 50.0% | |
| CAGAAAAGCCGCCAAGTGTT+CGG | - | chr1.1:45213238-45213257 | MS.gene72976:intron | 50.0% | |
| CTGATACCACGCCAGTTTCA+TGG | + | chr1.1:45213296-45213315 | None:intergenic | 50.0% | |
| GAAAAGACCCGCCAGAACAT+AGG | + | chr1.1:45212993-45213012 | None:intergenic | 50.0% | |
| GACAAGCTTCCGGTTATGAG+GGG | + | chr1.1:45213574-45213593 | None:intergenic | 50.0% | |
| GGACAAGCTTCCGGTTATGA+GGG | + | chr1.1:45213575-45213594 | None:intergenic | 50.0% | |
| TGGACAAGCTTCCGGTTATG+AGG | + | chr1.1:45213576-45213595 | None:intergenic | 50.0% | |
| TGGTAACTAACCGACGACAC+TGG | + | chr1.1:45211251-45211270 | None:intergenic | 50.0% | |
| ! | AGTAAGTTCCTTCTGGAGGC+TGG | + | chr1.1:45213596-45213615 | None:intergenic | 50.0% |
| ! | GAACACTTGGCGGCTTTTCT+GGG | + | chr1.1:45213239-45213258 | None:intergenic | 50.0% |
| ! | GCAAAGAGAGTACAGCATGG+AGG | - | chr1.1:45213515-45213534 | MS.gene72976:intron | 50.0% |
| ! | TGTTCCGGCCCTTGAGTTTT+AGG | - | chr1.1:45212184-45212203 | MS.gene72976:intron | 50.0% |
| !! | TCTTGGACTGGCACCATCAT+TGG | - | chr1.1:45212511-45212530 | MS.gene72976:intron | 50.0% |
| AAGCTTGTCCAGCCTCCAGA+AGG | - | chr1.1:45213585-45213604 | MS.gene72976:intron | 55.0% | |
| AGACCCGCCAGAACATAGGA+AGG | + | chr1.1:45212989-45213008 | None:intergenic | 55.0% | |
| CTAACCGACGACACTGGATC+CGG | + | chr1.1:45211245-45211264 | None:intergenic | 55.0% | |
| GACCCGCCAGAACATAGGAA+GGG | + | chr1.1:45212988-45213007 | None:intergenic | 55.0% | |
| GGCGATGGCACTGTTAGCTA+TGG | - | chr1.1:45212457-45212476 | MS.gene72976:intron | 55.0% | |
| TGCCCTTCCTATGTTCTGGC+GGG | - | chr1.1:45212983-45213002 | MS.gene72976:intron | 55.0% | |
| TTGCTGGAGGAGCTTGAACG+AGG | - | chr1.1:45212421-45212440 | MS.gene72976:CDS | 55.0% | |
| ! | CGAACACTTGGCGGCTTTTC+TGG | + | chr1.1:45213240-45213259 | None:intergenic | 55.0% |
| CTGGAGGCTGGACAAGCTTC+CGG | + | chr1.1:45213584-45213603 | None:intergenic | 60.0% | |
| TCAGCCGGATCCAGTGTCGT+CGG | - | chr1.1:45211238-45211257 | MS.gene72976:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 45211226 | 45213620 | 45211226 | ID=MS.gene72976 |
| chr1.1 | mRNA | 45211226 | 45213620 | 45211226 | ID=MS.gene72976.t1;Parent=MS.gene72976 |
| chr1.1 | exon | 45213587 | 45213620 | 45213587 | ID=MS.gene72976.t1.exon1;Parent=MS.gene72976.t1 |
| chr1.1 | CDS | 45213587 | 45213620 | 45213587 | ID=cds.MS.gene72976.t1;Parent=MS.gene72976.t1 |
| chr1.1 | exon | 45212303 | 45212442 | 45212303 | ID=MS.gene72976.t1.exon2;Parent=MS.gene72976.t1 |
| chr1.1 | CDS | 45212303 | 45212442 | 45212303 | ID=cds.MS.gene72976.t1;Parent=MS.gene72976.t1 |
| chr1.1 | exon | 45211538 | 45211663 | 45211538 | ID=MS.gene72976.t1.exon3;Parent=MS.gene72976.t1 |
| chr1.1 | CDS | 45211538 | 45211663 | 45211538 | ID=cds.MS.gene72976.t1;Parent=MS.gene72976.t1 |
| chr1.1 | exon | 45211226 | 45211366 | 45211226 | ID=MS.gene72976.t1.exon4;Parent=MS.gene72976.t1 |
| chr1.1 | CDS | 45211226 | 45211366 | 45211226 | ID=cds.MS.gene72976.t1;Parent=MS.gene72976.t1 |
| Gene Sequence |
| Protein sequence |
