Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015674.t1 | XP_003630920.1 | 100 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 8.50E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015674.t1 | Q93YP0 | 78.7 | 136 | 29 | 0 | 1 | 136 | 1 | 136 | 1.4e-61 | 237.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015674.t1 | A0A072TVE7 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 6.1e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020503 | MS.gene015674 | PPI |
| MS.gene015674 | MS.gene94636 | PPI |
| MS.gene065711 | MS.gene015674 | PPI |
| MS.gene015674 | MS.gene72976 | PPI |
| MS.gene073110 | MS.gene015674 | PPI |
| MS.gene91501 | MS.gene015674 | PPI |
| MS.gene29973 | MS.gene015674 | PPI |
| MS.gene034818 | MS.gene015674 | PPI |
| MS.gene015674 | MS.gene35346 | PPI |
| MS.gene41103 | MS.gene015674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015674.t1 | MTR_8g105010 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 6.81e-103 | 293 |
| MS.gene015674.t1 | MTR_8g105010 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 8.90e-103 | 293 |
| MS.gene015674.t1 | MTR_1g058100 | 80.000 | 140 | 28 | 0 | 1 | 140 | 3 | 142 | 1.45e-83 | 243 |
| MS.gene015674.t1 | MTR_1g058100 | 78.873 | 142 | 28 | 1 | 1 | 140 | 3 | 144 | 1.27e-81 | 239 |
| MS.gene015674.t1 | MTR_1g058100 | 70.000 | 140 | 24 | 1 | 1 | 140 | 3 | 124 | 2.53e-66 | 199 |
| MS.gene015674.t1 | MTR_1g058100 | 81.553 | 103 | 19 | 0 | 1 | 103 | 3 | 105 | 1.04e-60 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015674.t1 | AT1G23260 | 79.286 | 140 | 29 | 0 | 1 | 140 | 1 | 140 | 5.73e-84 | 245 |
| MS.gene015674.t1 | AT1G70660 | 78.571 | 140 | 30 | 0 | 1 | 140 | 1 | 140 | 1.59e-81 | 238 |
| MS.gene015674.t1 | AT1G70660 | 78.571 | 140 | 30 | 0 | 1 | 140 | 1 | 140 | 5.51e-81 | 238 |
| MS.gene015674.t1 | AT3G52560 | 77.143 | 140 | 32 | 0 | 1 | 140 | 3 | 142 | 8.67e-81 | 236 |
| MS.gene015674.t1 | AT3G52560 | 76.596 | 141 | 32 | 1 | 1 | 140 | 3 | 143 | 5.16e-79 | 232 |
| MS.gene015674.t1 | AT2G36060 | 75.000 | 140 | 35 | 0 | 5 | 144 | 6 | 145 | 2.26e-78 | 230 |
| MS.gene015674.t1 | AT2G36060 | 74.468 | 141 | 35 | 1 | 5 | 144 | 6 | 146 | 1.42e-76 | 226 |
| MS.gene015674.t1 | AT3G52560 | 68.354 | 158 | 32 | 1 | 1 | 140 | 3 | 160 | 3.67e-76 | 226 |
| MS.gene015674.t1 | AT2G36060 | 74.286 | 140 | 35 | 1 | 5 | 144 | 6 | 144 | 6.88e-76 | 224 |
| MS.gene015674.t1 | AT1G70650 | 78.195 | 133 | 29 | 0 | 8 | 140 | 444 | 576 | 1.89e-73 | 232 |
| MS.gene015674.t1 | AT1G23260 | 76.190 | 105 | 25 | 0 | 36 | 140 | 1 | 105 | 2.37e-60 | 184 |
| MS.gene015674.t1 | AT3G52560 | 71.698 | 106 | 29 | 1 | 36 | 140 | 1 | 106 | 3.18e-54 | 168 |
Find 40 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAGGAATTTCAGATTAT+TGG | 0.156726 | 4.4:+2290456 | MS.gene015674:CDS |
| GCAAGCATGGGAAACAAATT+TGG | 0.244783 | 4.4:-2291433 | None:intergenic |
| TCATGGACTGGGACTATTAT+TGG | 0.312389 | 4.4:+2290562 | MS.gene015674:CDS |
| TAACTACCACTCCAGATTCT+TGG | 0.355892 | 4.4:-2291307 | None:intergenic |
| CTAACAGATGGTGGATTGTC+TGG | 0.370636 | 4.4:-2291251 | None:intergenic |
| ACTTGCGTCAACCAAGAATC+TGG | 0.394238 | 4.4:+2291296 | MS.gene015674:CDS |
| GAGCGAGGTGAGAAGGGAAT+TGG | 0.414625 | 4.4:+2290487 | MS.gene015674:CDS |
| CAGGAGGCTGAGATAGCTTC+CGG | 0.421676 | 4.4:-2291528 | None:intergenic |
| TGCCACAAAACAACTTCAAC+TGG | 0.424473 | 4.4:-2291220 | None:intergenic |
| ATATTCATGCAGTCATGGAC+TGG | 0.466117 | 4.4:+2290550 | MS.gene015674:CDS |
| TTGAGAGTGAAACTTTATGA+TGG | 0.467682 | 4.4:+2292034 | MS.gene015674:CDS |
| TCCAATAATCTGAAATTCCT+AGG | 0.468152 | 4.4:-2290457 | None:intergenic |
| TGTTTCCCATGCTTGCTAGT+TGG | 0.469816 | 4.4:+2291440 | MS.gene015674:CDS |
| AAATGATGTCCCCACAAAAC+CGG | 0.476684 | 4.4:+2291509 | MS.gene015674:CDS |
| AGAGCTTGAGCGAGGTGAGA+AGG | 0.483020 | 4.4:+2290480 | MS.gene015674:CDS |
| GAGCTTGAGCGAGGTGAGAA+GGG | 0.501264 | 4.4:+2290481 | MS.gene015674:CDS |
| TGTCTATCAATGCAGTTCCT+AGG | 0.505496 | 4.4:+2290440 | MS.gene015674:intron |
| GGAGACGGAACTGTTAGCTA+TGG | 0.518406 | 4.4:+2290508 | MS.gene015674:CDS |
| ATCATCAAAATGGGTTCTGA+AGG | 0.533662 | 4.4:+2288664 | None:intergenic |
| TTGAGAGTGATACTTTCTGA+TGG | 0.536022 | 4.4:-2291953 | None:intergenic |
| ATGATATATTCATGCAGTCA+TGG | 0.540165 | 4.4:+2290545 | MS.gene015674:CDS |
| TATTCATGCAGTCATGGACT+GGG | 0.545769 | 4.4:+2290551 | MS.gene015674:CDS |
| CATCTGTTAGATTTCAGACA+AGG | 0.568599 | 4.4:+2291264 | MS.gene015674:CDS |
| CTTGTCTGAAATCTAACAGA+TGG | 0.576929 | 4.4:-2291263 | None:intergenic |
| CGGAACTGTTAGCTATGGGA+TGG | 0.580756 | 4.4:+2290513 | MS.gene015674:CDS |
| GAGACGGAACTGTTAGCTAT+GGG | 0.590695 | 4.4:+2290509 | MS.gene015674:CDS |
| AAGCTATCTCAGCCTCCTGA+AGG | 0.591688 | 4.4:+2291532 | MS.gene015674:CDS |
| GTCTGAAATCTAACAGATGG+TGG | 0.615185 | 4.4:-2291260 | None:intergenic |
| TCTGAAGGATCCACCGTCGT+TGG | 0.619901 | 4.4:+2288679 | MS.gene015674:CDS |
| GGTGAGAAGGGAATTGGAGA+CGG | 0.623567 | 4.4:+2290493 | MS.gene015674:CDS |
| TTGGAAAAGAGAGTCTACAA+TGG | 0.665507 | 4.4:+2291459 | MS.gene015674:CDS |
| TTATTGGAAGAGCTTGAGCG+AGG | 0.667755 | 4.4:+2290472 | MS.gene015674:CDS |
| CGTCAACCAAGAATCTGGAG+TGG | 0.681244 | 4.4:+2291301 | MS.gene015674:CDS |
| AAGAATAGAACTTACACCCG+GGG | 0.681780 | 4.4:-2290587 | None:intergenic |
| AAGAATGACACACCTTCAGG+AGG | 0.686018 | 4.4:-2291544 | None:intergenic |
| TGGAGAATTACCAACGACGG+TGG | 0.699097 | 4.4:-2288689 | None:intergenic |
| TTATATCAGACTGTTCACGA+AGG | 0.716168 | 4.4:+2291188 | MS.gene015674:intron |
| TGTTGGAGAATTACCAACGA+CGG | 0.741066 | 4.4:-2288692 | None:intergenic |
| AGAATAGAACTTACACCCGG+GGG | 0.747089 | 4.4:-2290586 | None:intergenic |
| GAATAGAACTTACACCCGGG+GGG | 0.773466 | 4.4:-2290585 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATGTTAAACAAAAAAA+TGG | - | chr4.4:2289280-2289299 | None:intergenic | 10.0% |
| !! | AATTATAAACTTCATCAAAA+TGG | + | chr4.4:2289905-2289924 | MS.gene015674:intron | 15.0% |
| !! | ACACTAATAAATATCTAAAT+TGG | + | chr4.4:2291401-2291420 | MS.gene015674:intron | 15.0% |
| !! | ATTATAAACTTCATCAAAAT+GGG | + | chr4.4:2289906-2289925 | MS.gene015674:intron | 15.0% |
| !! | AAAAAGTAGAAAGAGATAAT+AGG | - | chr4.4:2288739-2288758 | None:intergenic | 20.0% |
| !! | AATATTGATAAGAAAACTTC+AGG | - | chr4.4:2291048-2291067 | None:intergenic | 20.0% |
| !! | AGTAAGTAAGTAAGTAAAAA+TGG | - | chr4.4:2291333-2291352 | None:intergenic | 20.0% |
| !! | AGTTATTATTCTTAAGCAAA+AGG | - | chr4.4:2290013-2290032 | None:intergenic | 20.0% |
| !! | ATTTGGATCAAATCATAATA+AGG | + | chr4.4:2290219-2290238 | MS.gene015674:intron | 20.0% |
| !! | TAATAAATATCTAAATTGGC+AGG | + | chr4.4:2291405-2291424 | MS.gene015674:intron | 20.0% |
| !! | TATGTTAAACAAAAAAATGG+CGG | - | chr4.4:2289277-2289296 | None:intergenic | 20.0% |
| !! | TTTGGATCAAATCATAATAA+GGG | + | chr4.4:2290220-2290239 | MS.gene015674:intron | 20.0% |
| !!! | AAATTAAACATCATTTTGAC+TGG | + | chr4.4:2291142-2291161 | MS.gene015674:intron | 20.0% |
| !!! | CAATCTTTCAAAAAGTTTTT+CGG | - | chr4.4:2290636-2290655 | None:intergenic | 20.0% |
| !!! | GTTTTTTTGAAATTGATCAA+GGG | + | chr4.4:2288879-2288898 | MS.gene015674:intron | 20.0% |
| !!! | TATGGGTACTTTAAAATTTA+CGG | + | chr4.4:2289360-2289379 | MS.gene015674:intron | 20.0% |
| !!! | TTTTGAAGTGAATTTTCATA+TGG | + | chr4.4:2290925-2290944 | MS.gene015674:intron | 20.0% |
| ! | AAGAAAACTTCAGGAAAATA+AGG | - | chr4.4:2291039-2291058 | None:intergenic | 25.0% |
| ! | AATGAATTTGCATCAATATC+AGG | - | chr4.4:2288915-2288934 | None:intergenic | 25.0% |
| ! | AGAAAACTTCAGGAAAATAA+GGG | - | chr4.4:2291038-2291057 | None:intergenic | 25.0% |
| ! | ATGTTAAACAAAAAAATGGC+GGG | - | chr4.4:2289276-2289295 | None:intergenic | 25.0% |
| ! | ATTTCTGTAATAAACGTAAC+AGG | + | chr4.4:2288978-2288997 | MS.gene015674:intron | 25.0% |
| ! | CATATTTCTTAGTGCATTAA+AGG | - | chr4.4:2289757-2289776 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAGCAGAAAAT+TGG | - | chr4.4:2288763-2288782 | None:intergenic | 25.0% |
| ! | GAATATAGTAAATTCGTGTA+AGG | - | chr4.4:2290271-2290290 | None:intergenic | 25.0% |
| ! | GATGAAGTTTATAATTACTC+AGG | - | chr4.4:2289901-2289920 | None:intergenic | 25.0% |
| ! | GTGCTGAAATAGTTAATATT+TGG | + | chr4.4:2290202-2290221 | MS.gene015674:intron | 25.0% |
| ! | TAACCTATTGTAGAAACTTT+AGG | + | chr4.4:2289164-2289183 | MS.gene015674:intron | 25.0% |
| ! | TCACAAAATCTTTCAAATCA+TGG | - | chr4.4:2289018-2289037 | None:intergenic | 25.0% |
| ! | TTATTTATGCTCACTGTAAT+TGG | + | chr4.4:2289063-2289082 | MS.gene015674:intron | 25.0% |
| ! | TTTCTGTAATAAACGTAACA+GGG | + | chr4.4:2288979-2288998 | MS.gene015674:intron | 25.0% |
| !! | GTGACAAATTTTTATTGATC+AGG | + | chr4.4:2289709-2289728 | MS.gene015674:intron | 25.0% |
| !! | TTTGGTTGTTGTTGTATATT+AGG | + | chr4.4:2291789-2291808 | MS.gene015674:intron | 25.0% |
| !!! | CGTTTTTTTGAAATTGATCA+AGG | + | chr4.4:2288878-2288897 | MS.gene015674:intron | 25.0% |
| !!! | TTGTATTTTGATCAGAATGA+GGG | + | chr4.4:2290803-2290822 | MS.gene015674:intron | 25.0% |
| !!! | TTTGTATTTTGATCAGAATG+AGG | + | chr4.4:2290802-2290821 | MS.gene015674:intron | 25.0% |
| !!! | TTTTCTGCTTTTTTTCTTCT+TGG | + | chr4.4:2288764-2288783 | MS.gene015674:intron | 25.0% |
| !!! | TTTTTTCATCTCATCTGTTT+TGG | + | chr4.4:2288824-2288843 | MS.gene015674:intron | 25.0% |
| ACAAATTGCAAATCTACAAG+TGG | - | chr4.4:2290392-2290411 | None:intergenic | 30.0% | |
| ACTAACTCGCTTAAAAAACA+AGG | + | chr4.4:2290111-2290130 | MS.gene015674:intron | 30.0% | |
| AGCAAAAGGATACTAAAAAG+AGG | - | chr4.4:2289999-2290018 | None:intergenic | 30.0% | |
| ATAAACTTCATCAAAATGGG+TGG | + | chr4.4:2289909-2289928 | MS.gene015674:intron | 30.0% | |
| ATGATATATTCATGCAGTCA+TGG | + | chr4.4:2290545-2290564 | MS.gene015674:CDS | 30.0% | |
| CCTAAACAGTTAAAAACCAA+GGG | - | chr4.4:2289603-2289622 | None:intergenic | 30.0% | |
| CTTAAAAAACAAGGCTAGAT+TGG | + | chr4.4:2290120-2290139 | MS.gene015674:intron | 30.0% | |
| CTTAACATGTTGAAGAACAA+GGG | - | chr4.4:2289571-2289590 | None:intergenic | 30.0% | |
| GGAAATGAAAATAGAAGTGA+AGG | - | chr4.4:2288718-2288737 | None:intergenic | 30.0% | |
| GTGAATTGTTGACCAAAATA+GGG | - | chr4.4:2290719-2290738 | None:intergenic | 30.0% | |
| TCCTAGGAATTTCAGATTAT+TGG | + | chr4.4:2290456-2290475 | MS.gene015674:CDS | 30.0% | |
| TCTCAAATCTTATTGCTTCA+GGG | + | chr4.4:2289833-2289852 | MS.gene015674:intron | 30.0% | |
| TCTTAACATGTTGAAGAACA+AGG | - | chr4.4:2289572-2289591 | None:intergenic | 30.0% | |
| TGTGAATTGTTGACCAAAAT+AGG | - | chr4.4:2290720-2290739 | None:intergenic | 30.0% | |
| TGTTAAACAAAAAAATGGCG+GGG | - | chr4.4:2289275-2289294 | None:intergenic | 30.0% | |
| TTCTTCTTATAGTGACTGTA+TGG | + | chr4.4:2291668-2291687 | MS.gene015674:intron | 30.0% | |
| TTGAGAGTGAAACTTTATGA+TGG | + | chr4.4:2292034-2292053 | MS.gene015674:CDS | 30.0% | |
| ! | AATTTTTATTGATCAGGAGC+AGG | + | chr4.4:2289715-2289734 | MS.gene015674:intron | 30.0% |
| ! | GAAATATGTTGTAACTTGCA+TGG | + | chr4.4:2289769-2289788 | MS.gene015674:intron | 30.0% |
| ! | TCCAATAATCTGAAATTCCT+AGG | - | chr4.4:2290460-2290479 | None:intergenic | 30.0% |
| ! | TTAAAGTACCCATACTTCAA+AGG | - | chr4.4:2289354-2289373 | None:intergenic | 30.0% |
| !! | CCTTGGTTTTTAACTGTTTA+GGG | + | chr4.4:2289601-2289620 | MS.gene015674:intron | 30.0% |
| !! | TATTAGGACCTTTGAAGTAT+GGG | + | chr4.4:2289343-2289362 | MS.gene015674:intron | 30.0% |
| !! | TTATTAGGACCTTTGAAGTA+TGG | + | chr4.4:2289342-2289361 | MS.gene015674:intron | 30.0% |
| !!! | AACTGTTTAGGGCTTTTTTT+TGG | + | chr4.4:2289612-2289631 | MS.gene015674:intron | 30.0% |
| !!! | CATAAGTTCTGTGTTTTTTC+TGG | + | chr4.4:2291634-2291653 | MS.gene015674:intron | 30.0% |
| !!! | CTTTTTAGCTTCTTCAAAAG+TGG | + | chr4.4:2290897-2290916 | MS.gene015674:intron | 30.0% |
| !!! | TCTCTATTTTTGCCCTATTT+TGG | + | chr4.4:2290704-2290723 | MS.gene015674:intron | 30.0% |
| !!! | TGTATTTTGATCAGAATGAG+GGG | + | chr4.4:2290804-2290823 | MS.gene015674:intron | 30.0% |
| AAAGAATAGAACTTACACCC+GGG | - | chr4.4:2290591-2290610 | None:intergenic | 35.0% | |
| AACAGGATTCCAGAAGTTAT+TGG | - | chr4.4:2290167-2290186 | None:intergenic | 35.0% | |
| AATAAGAATGACACACCTTC+AGG | - | chr4.4:2291550-2291569 | None:intergenic | 35.0% | |
| AATTACTCAGGTTACCAATG+AGG | - | chr4.4:2289889-2289908 | None:intergenic | 35.0% | |
| ACAAGCTCATCCATTTATCT+GGG | + | chr4.4:2289313-2289332 | MS.gene015674:intron | 35.0% | |
| ACATTTGTAATCTCCAGAGT+AGG | - | chr4.4:2291906-2291925 | None:intergenic | 35.0% | |
| AGAAGTTATTGGTCCAATTC+AGG | - | chr4.4:2290156-2290175 | None:intergenic | 35.0% | |
| AGTTCCTGAGAGTTCTTTAT+GGG | + | chr4.4:2289965-2289984 | MS.gene015674:intron | 35.0% | |
| CAAAGAATAGAACTTACACC+CGG | - | chr4.4:2290592-2290611 | None:intergenic | 35.0% | |
| CATCTGTTAGATTTCAGACA+AGG | + | chr4.4:2291264-2291283 | MS.gene015674:CDS | 35.0% | |
| CATGTTAGCTACAAATGACA+AGG | - | chr4.4:2290953-2290972 | None:intergenic | 35.0% | |
| CATTAATTGTCAACCTACTC+TGG | + | chr4.4:2291890-2291909 | MS.gene015674:intron | 35.0% | |
| CCCTAAACAGTTAAAAACCA+AGG | - | chr4.4:2289604-2289623 | None:intergenic | 35.0% | |
| CTCAAATCTTATTGCTTCAG+GGG | + | chr4.4:2289834-2289853 | MS.gene015674:intron | 35.0% | |
| CTGCCTAAAGTTTCTACAAT+AGG | - | chr4.4:2289170-2289189 | None:intergenic | 35.0% | |
| CTTTAGTCAATCAACAATCG+CGG | + | chr4.4:2289391-2289410 | MS.gene015674:intron | 35.0% | |
| GTCTCAAATCTTATTGCTTC+AGG | + | chr4.4:2289832-2289851 | MS.gene015674:intron | 35.0% | |
| GTGATCTAAATCATGAAAGC+TGG | + | chr4.4:2290085-2290104 | MS.gene015674:intron | 35.0% | |
| GTTGTATATTAGGTAACCAC+TGG | + | chr4.4:2291799-2291818 | MS.gene015674:intron | 35.0% | |
| TACAAGCTCATCCATTTATC+TGG | + | chr4.4:2289312-2289331 | MS.gene015674:intron | 35.0% | |
| TAGTTCCTGAGAGTTCTTTA+TGG | + | chr4.4:2289964-2289983 | MS.gene015674:intron | 35.0% | |
| TCACTTAGTGGGATATAGTT+TGG | + | chr4.4:2291771-2291790 | MS.gene015674:intron | 35.0% | |
| TGAATTGGACCAATAACTTC+TGG | + | chr4.4:2290155-2290174 | MS.gene015674:intron | 35.0% | |
| TGTGAAATTACTGCATCAGT+TGG | + | chr4.4:2291854-2291873 | MS.gene015674:intron | 35.0% | |
| TGTTAAGACAAAAATGCCCT+TGG | + | chr4.4:2289584-2289603 | MS.gene015674:intron | 35.0% | |
| TTATATCAGACTGTTCACGA+AGG | + | chr4.4:2291188-2291207 | MS.gene015674:intron | 35.0% | |
| TTCATCACTGTCCAAATTTG+TGG | + | chr4.4:2291727-2291746 | MS.gene015674:intron | 35.0% | |
| TTGAGAGTGATACTTTCTGA+TGG | - | chr4.4:2291956-2291975 | None:intergenic | 35.0% | |
| TTGGAAAAGAGAGTCTACAA+TGG | + | chr4.4:2291459-2291478 | MS.gene015674:CDS | 35.0% | |
| ! | ATATCCAGCATAAGTTGACA+AGG | - | chr4.4:2290747-2290766 | None:intergenic | 35.0% |
| ! | CTTGTCTGAAATCTAACAGA+TGG | - | chr4.4:2291266-2291285 | None:intergenic | 35.0% |
| ! | CTTTGGAAACTAAGTGGTTA+TGG | + | chr4.4:2290859-2290878 | MS.gene015674:intron | 35.0% |
| ! | GAAAATAGAAGTGAAGGTGT+TGG | - | chr4.4:2288712-2288731 | None:intergenic | 35.0% |
| ! | GTTTTCTTTTGGATCCTCAT+TGG | + | chr4.4:2289872-2289891 | MS.gene015674:intron | 35.0% |
| ! | TAACCACTGGTTGTCTAATA+TGG | + | chr4.4:2291812-2291831 | MS.gene015674:intron | 35.0% |
| ! | TTGGGTTTGATGTTTTGCTT+TGG | + | chr4.4:2290842-2290861 | MS.gene015674:intron | 35.0% |
| !! | AATAACTTCTGGAATCCTGT+TGG | + | chr4.4:2290166-2290185 | MS.gene015674:intron | 35.0% |
| !! | ATAACTTCTGGAATCCTGTT+GGG | + | chr4.4:2290167-2290186 | MS.gene015674:intron | 35.0% |
| !! | ATTCTGTGCATGGCTTTAAT+TGG | - | chr4.4:2291079-2291098 | None:intergenic | 35.0% |
| !! | CCCTTGGTTTTTAACTGTTT+AGG | + | chr4.4:2289600-2289619 | MS.gene015674:intron | 35.0% |
| !! | TACCAGTTGAAGTTGTTTTG+TGG | + | chr4.4:2291218-2291237 | MS.gene015674:CDS | 35.0% |
| !! | TTCTGTGCATGGCTTTAATT+GGG | - | chr4.4:2291078-2291097 | None:intergenic | 35.0% |
| !!! | GTTTTGCTTTGGAAACTAAG+TGG | + | chr4.4:2290853-2290872 | MS.gene015674:intron | 35.0% |
| !!! | TCGAACAGCTTTTAACTTCT+CGG | + | chr4.4:2292005-2292024 | MS.gene015674:CDS | 35.0% |
| !!! | TCTGCTTTTTTTCTTCTTGG+TGG | + | chr4.4:2288767-2288786 | MS.gene015674:intron | 35.0% |
| !!! | TTGTTGGAAGCGTTTTCTTT+TGG | + | chr4.4:2289861-2289880 | MS.gene015674:intron | 35.0% |
| AAATGATGTCCCCACAAAAC+CGG | + | chr4.4:2291509-2291528 | MS.gene015674:CDS | 40.0% | |
| AAGAATAGAACTTACACCCG+GGG | - | chr4.4:2290590-2290609 | None:intergenic | 40.0% | |
| AATTCCTAAAGCAGTGTAGC+GGG | - | chr4.4:2289689-2289708 | None:intergenic | 40.0% | |
| ACACCATATTAGACAACCAG+TGG | - | chr4.4:2291818-2291837 | None:intergenic | 40.0% | |
| ACATAGTAGACGAGCAGAAA+AGG | + | chr4.4:2289537-2289556 | MS.gene015674:intron | 40.0% | |
| ACTTGGCAACTCACAAGTAT+TGG | + | chr4.4:2290048-2290067 | MS.gene015674:intron | 40.0% | |
| AGGGCAAAAATAGAGAACTG+TGG | - | chr4.4:2290700-2290719 | None:intergenic | 40.0% | |
| ATAACCACAGCCCAGATAAA+TGG | - | chr4.4:2289326-2289345 | None:intergenic | 40.0% | |
| ATATCCCACTAAGTGAAGTG+AGG | - | chr4.4:2291767-2291786 | None:intergenic | 40.0% | |
| ATATTCATGCAGTCATGGAC+TGG | + | chr4.4:2290550-2290569 | MS.gene015674:CDS | 40.0% | |
| CAATTCCTAAAGCAGTGTAG+CGG | - | chr4.4:2289690-2289709 | None:intergenic | 40.0% | |
| CTACAATAGGTTAACTGAGC+AGG | - | chr4.4:2289157-2289176 | None:intergenic | 40.0% | |
| CTGGTTGTCTAATATGGTGT+TGG | + | chr4.4:2291818-2291837 | MS.gene015674:intron | 40.0% | |
| CTTCAGGAAAATAAGGGTCT+AGG | - | chr4.4:2291032-2291051 | None:intergenic | 40.0% | |
| CTTCTGTTGTGTACCAAACT+TGG | + | chr4.4:2290031-2290050 | MS.gene015674:intron | 40.0% | |
| GCAAGCATGGGAAACAAATT+TGG | - | chr4.4:2291436-2291455 | None:intergenic | 40.0% | |
| GGTTGAGCAAATCTATGTTG+CGG | + | chr4.4:2289465-2289484 | MS.gene015674:intron | 40.0% | |
| GTTCCTGAGAGTTCTTTATG+GGG | + | chr4.4:2289966-2289985 | MS.gene015674:intron | 40.0% | |
| TAACTACCACTCCAGATTCT+TGG | - | chr4.4:2291310-2291329 | None:intergenic | 40.0% | |
| TACTTGTGAGTTGCCAAGTT+TGG | - | chr4.4:2290047-2290066 | None:intergenic | 40.0% | |
| TATTCATGCAGTCATGGACT+GGG | + | chr4.4:2290551-2290570 | MS.gene015674:CDS | 40.0% | |
| TCATCCTTGTCAACTTATGC+TGG | + | chr4.4:2290740-2290759 | MS.gene015674:intron | 40.0% | |
| TCCATTGTAGCAGTTGCTAT+AGG | + | chr4.4:2291611-2291630 | MS.gene015674:intron | 40.0% | |
| TGCCACAAAACAACTTCAAC+TGG | - | chr4.4:2291223-2291242 | None:intergenic | 40.0% | |
| TGGTTACTCTTGACCTGAAT+TGG | + | chr4.4:2290140-2290159 | MS.gene015674:intron | 40.0% | |
| TGTAAGGAAATGCACACTCT+TGG | - | chr4.4:2290255-2290274 | None:intergenic | 40.0% | |
| TGTCTATCAATGCAGTTCCT+AGG | + | chr4.4:2290440-2290459 | MS.gene015674:intron | 40.0% | |
| TGTTGGAGAATTACCAACGA+CGG | - | chr4.4:2288695-2288714 | None:intergenic | 40.0% | |
| TTATCTGGGCTGTGGTTATT+AGG | + | chr4.4:2289327-2289346 | MS.gene015674:intron | 40.0% | |
| TTCCTGAGAGTTCTTTATGG+GGG | + | chr4.4:2289967-2289986 | MS.gene015674:intron | 40.0% | |
| TTGCTTCAGGGGTTATTTGT+TGG | + | chr4.4:2289845-2289864 | MS.gene015674:intron | 40.0% | |
| ! | AGGAGCAGGAAATTTTAGAC+GGG | + | chr4.4:2289729-2289748 | MS.gene015674:intron | 40.0% |
| ! | ATTTGAGACACCAGATTCTC+AGG | - | chr4.4:2289821-2289840 | None:intergenic | 40.0% |
| ! | CAGGAGCAGGAAATTTTAGA+CGG | + | chr4.4:2289728-2289747 | MS.gene015674:intron | 40.0% |
| ! | CTTTTCCAACTAGCAAGCAT+GGG | - | chr4.4:2291448-2291467 | None:intergenic | 40.0% |
| ! | GTCTGAAATCTAACAGATGG+TGG | - | chr4.4:2291263-2291282 | None:intergenic | 40.0% |
| ! | TCTTTTCCAACTAGCAAGCA+TGG | - | chr4.4:2291449-2291468 | None:intergenic | 40.0% |
| ! | TGTGCTGATCTCTAGTTGTT+AGG | + | chr4.4:2291102-2291121 | MS.gene015674:intron | 40.0% |
| ! | TTTGAGACACCAGATTCTCA+GGG | - | chr4.4:2289820-2289839 | None:intergenic | 40.0% |
| !! | GTTGAAGTTGTTTTGTGGCA+AGG | + | chr4.4:2291223-2291242 | MS.gene015674:CDS | 40.0% |
| !! | TAACTTCTGGAATCCTGTTG+GGG | + | chr4.4:2290168-2290187 | MS.gene015674:intron | 40.0% |
| !! | TCATGGACTGGGACTATTAT+TGG | + | chr4.4:2290562-2290581 | MS.gene015674:CDS | 40.0% |
| !! | TCTGTGCATGGCTTTAATTG+GGG | - | chr4.4:2291077-2291096 | None:intergenic | 40.0% |
| AAGAATGACACACCTTCAGG+AGG | - | chr4.4:2291547-2291566 | None:intergenic | 45.0% | |
| ACCAAAGTTATAGCCCCAAC+AGG | - | chr4.4:2290184-2290203 | None:intergenic | 45.0% | |
| ACCAACCTCACTTCACTTAG+TGG | + | chr4.4:2291759-2291778 | MS.gene015674:intron | 45.0% | |
| ACTTGCGTCAACCAAGAATC+TGG | + | chr4.4:2291296-2291315 | MS.gene015674:CDS | 45.0% | |
| AGAATAGAACTTACACCCGG+GGG | - | chr4.4:2290589-2290608 | None:intergenic | 45.0% | |
| AGGAAATGCACACTCTTGGA+CGG | - | chr4.4:2290251-2290270 | None:intergenic | 45.0% | |
| AGTTAAGGAGCGGAGTGATA+AGG | - | chr4.4:2289228-2289247 | None:intergenic | 45.0% | |
| ATGTAAAACAACGTGGTGGC+TGG | + | chr4.4:2289444-2289463 | MS.gene015674:intron | 45.0% | |
| CAGCACATGAATTCTGTGCA+TGG | - | chr4.4:2291089-2291108 | None:intergenic | 45.0% | |
| CAGCGCTATGTAAAACAACG+TGG | + | chr4.4:2289437-2289456 | MS.gene015674:intron | 45.0% | |
| CCAACCTCACTTCACTTAGT+GGG | + | chr4.4:2291760-2291779 | MS.gene015674:intron | 45.0% | |
| CGCTATGTAAAACAACGTGG+TGG | + | chr4.4:2289440-2289459 | MS.gene015674:intron | 45.0% | |
| CTGTCCAAATTTGTGGACAG+TGG | + | chr4.4:2291734-2291753 | MS.gene015674:intron | 45.0% | |
| GAGACGGAACTGTTAGCTAT+GGG | + | chr4.4:2290509-2290528 | MS.gene015674:CDS | 45.0% | |
| GATATAACGTTGGTCAGGGT+GGG | - | chr4.4:2289253-2289272 | None:intergenic | 45.0% | |
| GCCTATAGCAACTGCTACAA+TGG | - | chr4.4:2291615-2291634 | None:intergenic | 45.0% | |
| GTGGTTGCTTGCTTGTGTAT+AGG | + | chr4.4:2288786-2288805 | MS.gene015674:intron | 45.0% | |
| GTGTCCACTGTCCACAAATT+TGG | - | chr4.4:2291741-2291760 | None:intergenic | 45.0% | |
| GTTAAGGAGCGGAGTGATAA+GGG | - | chr4.4:2289227-2289246 | None:intergenic | 45.0% | |
| TAGTCAATCAACAATCGCGG+TGG | + | chr4.4:2289394-2289413 | MS.gene015674:intron | 45.0% | |
| TCATCCATTTATCTGGGCTG+TGG | + | chr4.4:2289319-2289338 | MS.gene015674:intron | 45.0% | |
| TCCTGTTGGGGCTATAACTT+TGG | + | chr4.4:2290180-2290199 | MS.gene015674:intron | 45.0% | |
| TTAAGGAGCGGAGTGATAAG+GGG | - | chr4.4:2289226-2289245 | None:intergenic | 45.0% | |
| TTATTGGAAGAGCTTGAGCG+AGG | + | chr4.4:2290472-2290491 | MS.gene015674:CDS | 45.0% | |
| ! | AAATGGCGGGGATATAACGT+TGG | - | chr4.4:2289263-2289282 | None:intergenic | 45.0% |
| ! | GGAGCAGGAAATTTTAGACG+GGG | + | chr4.4:2289730-2289749 | MS.gene015674:intron | 45.0% |
| ! | GTTGTAACTTGCATGGTGTG+TGG | + | chr4.4:2289776-2289795 | MS.gene015674:intron | 45.0% |
| ! | TAACTTGCATGGTGTGTGGA+GGG | + | chr4.4:2289780-2289799 | MS.gene015674:intron | 45.0% |
| ! | TGAGATAGCTTCCGGTTTTG+TGG | - | chr4.4:2291523-2291542 | None:intergenic | 45.0% |
| ! | TGTTTCCCATGCTTGCTAGT+TGG | + | chr4.4:2291440-2291459 | MS.gene015674:CDS | 45.0% |
| !! | AGATAGCTTCCGGTTTTGTG+GGG | - | chr4.4:2291521-2291540 | None:intergenic | 45.0% |
| !! | CACGTTGTTTTACATAGCGC+TGG | - | chr4.4:2289439-2289458 | None:intergenic | 45.0% |
| !! | CTAACAGATGGTGGATTGTC+TGG | - | chr4.4:2291254-2291273 | None:intergenic | 45.0% |
| !! | GAGATAGCTTCCGGTTTTGT+GGG | - | chr4.4:2291522-2291541 | None:intergenic | 45.0% |
| AACTTGCATGGTGTGTGGAG+GGG | + | chr4.4:2289781-2289800 | MS.gene015674:intron | 50.0% | |
| AAGCTATCTCAGCCTCCTGA+AGG | + | chr4.4:2291532-2291551 | MS.gene015674:CDS | 50.0% | |
| CCCACTAAGTGAAGTGAGGT+TGG | - | chr4.4:2291763-2291782 | None:intergenic | 50.0% | |
| CGGAACTGTTAGCTATGGGA+TGG | + | chr4.4:2290513-2290532 | MS.gene015674:CDS | 50.0% | |
| CGGGGATATAACGTTGGTCA+GGG | - | chr4.4:2289257-2289276 | None:intergenic | 50.0% | |
| CGGTGGTACTTGATGTAGTG+GGG | + | chr4.4:2289411-2289430 | MS.gene015674:intron | 50.0% | |
| CGTCAACCAAGAATCTGGAG+TGG | + | chr4.4:2291301-2291320 | MS.gene015674:CDS | 50.0% | |
| GAATAGAACTTACACCCGGG+GGG | - | chr4.4:2290588-2290607 | None:intergenic | 50.0% | |
| GAGTGATAAGGGGTGATCTC+GGG | - | chr4.4:2289216-2289235 | None:intergenic | 50.0% | |
| GCGGTGGTACTTGATGTAGT+GGG | + | chr4.4:2289410-2289429 | MS.gene015674:intron | 50.0% | |
| GGAGAAAGTCGCAATGCAGT+GGG | - | chr4.4:2289668-2289687 | None:intergenic | 50.0% | |
| GGAGACGGAACTGTTAGCTA+TGG | + | chr4.4:2290508-2290527 | MS.gene015674:CDS | 50.0% | |
| GGAGTGATAAGGGGTGATCT+CGG | - | chr4.4:2289217-2289236 | None:intergenic | 50.0% | |
| GGATATAACGTTGGTCAGGG+TGG | - | chr4.4:2289254-2289273 | None:intergenic | 50.0% | |
| GGTGAGAAGGGAATTGGAGA+CGG | + | chr4.4:2290493-2290512 | MS.gene015674:CDS | 50.0% | |
| TGCCCCCATAAAGAACTCTC+AGG | - | chr4.4:2289972-2289991 | None:intergenic | 50.0% | |
| TGGAGAATTACCAACGACGG+TGG | - | chr4.4:2288692-2288711 | None:intergenic | 50.0% | |
| TGGGTGGCATGTCATTCTTG+AGG | + | chr4.4:2289925-2289944 | MS.gene015674:intron | 50.0% | |
| TTAGGCAGCATGCTCTTGTG+TGG | + | chr4.4:2289182-2289201 | MS.gene015674:intron | 50.0% | |
| TTCTCCCGCTACACTGCTTT+AGG | + | chr4.4:2289682-2289701 | MS.gene015674:intron | 50.0% | |
| TTGGACCTTCTGTGTGACTC+CGG | + | chr4.4:2289631-2289650 | MS.gene015674:intron | 50.0% | |
| ! | GTAACTTGCATGGTGTGTGG+AGG | + | chr4.4:2289779-2289798 | MS.gene015674:intron | 50.0% |
| ACTTGCATGGTGTGTGGAGG+GGG | + | chr4.4:2289782-2289801 | MS.gene015674:intron | 55.0% | |
| AGAGCTTGAGCGAGGTGAGA+AGG | + | chr4.4:2290480-2290499 | MS.gene015674:CDS | 55.0% | |
| AGGGTGGGAGAGTTAAGGAG+CGG | - | chr4.4:2289238-2289257 | None:intergenic | 55.0% | |
| ATTCGGCCACCCTGAGAATC+TGG | + | chr4.4:2289808-2289827 | MS.gene015674:intron | 55.0% | |
| CAGGAGGCTGAGATAGCTTC+CGG | - | chr4.4:2291531-2291550 | None:intergenic | 55.0% | |
| CGCGGTGGTACTTGATGTAG+TGG | + | chr4.4:2289409-2289428 | MS.gene015674:intron | 55.0% | |
| GAGACACCAGATTCTCAGGG+TGG | - | chr4.4:2289817-2289836 | None:intergenic | 55.0% | |
| GAGCGAGGTGAGAAGGGAAT+TGG | + | chr4.4:2290487-2290506 | MS.gene015674:CDS | 55.0% | |
| GAGCTTGAGCGAGGTGAGAA+GGG | + | chr4.4:2290481-2290500 | MS.gene015674:CDS | 55.0% | |
| GCGGGGATATAACGTTGGTC+AGG | - | chr4.4:2289258-2289277 | None:intergenic | 55.0% | |
| GGGAGAAAGTCGCAATGCAG+TGG | - | chr4.4:2289669-2289688 | None:intergenic | 55.0% | |
| GGGTGTGCGCTGTGTGTATT+GGG | + | chr4.4:2290824-2290843 | MS.gene015674:intron | 55.0% | |
| TCTGAAGGATCCACCGTCGT+TGG | + | chr4.4:2288679-2288698 | MS.gene015674:CDS | 55.0% | |
| TGGGACTATTATTGGCCCCC+CGG | + | chr4.4:2290570-2290589 | MS.gene015674:CDS | 55.0% | |
| TGGTCAGGGTGGGAGAGTTA+AGG | - | chr4.4:2289243-2289262 | None:intergenic | 55.0% | |
| ! | GTGTGTGGAGGGGGTTGATT+CGG | + | chr4.4:2289791-2289810 | MS.gene015674:intron | 55.0% |
| GCGGCGAATTCGCAGACAAG+AGG | + | chr4.4:2289505-2289524 | MS.gene015674:intron | 60.0% | |
| GCTTGCCGGAGTCACACAGA+AGG | - | chr4.4:2289639-2289658 | None:intergenic | 60.0% | |
| GGGACTATTATTGGCCCCCC+GGG | + | chr4.4:2290571-2290590 | MS.gene015674:CDS | 60.0% | |
| GGGGTGTGCGCTGTGTGTAT+TGG | + | chr4.4:2290823-2290842 | MS.gene015674:intron | 60.0% | |
| GTCGCAATGCAGTGGGTACC+AGG | - | chr4.4:2289661-2289680 | None:intergenic | 60.0% | |
| CGCCGCCACACACAGTGCTA+CGG | - | chr4.4:2289491-2289510 | None:intergenic | 65.0% | |
| CTGTGTGACTCCGGCAAGCC+TGG | + | chr4.4:2289640-2289659 | MS.gene015674:intron | 65.0% | |
| GCAGTGGGTACCAGGCTTGC+CGG | - | chr4.4:2289653-2289672 | None:intergenic | 65.0% | |
| GGCCGTAGCACTGTGTGTGG+CGG | + | chr4.4:2289486-2289505 | MS.gene015674:intron | 65.0% | |
| TGCGGCCGTAGCACTGTGTG+TGG | + | chr4.4:2289483-2289502 | MS.gene015674:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 2288673 | 2292081 | 2288673 | ID=MS.gene015674 |
| chr4.4 | mRNA | 2288673 | 2292081 | 2288673 | ID=MS.gene015674.t1;Parent=MS.gene015674 |
| chr4.4 | exon | 2288673 | 2288700 | 2288673 | ID=MS.gene015674.t1.exon1;Parent=MS.gene015674.t1 |
| chr4.4 | CDS | 2288673 | 2288700 | 2288673 | ID=cds.MS.gene015674.t1;Parent=MS.gene015674.t1 |
| chr4.4 | exon | 2290455 | 2290594 | 2290455 | ID=MS.gene015674.t1.exon2;Parent=MS.gene015674.t1 |
| chr4.4 | CDS | 2290455 | 2290594 | 2290455 | ID=cds.MS.gene015674.t1;Parent=MS.gene015674.t1 |
| chr4.4 | exon | 2291197 | 2291322 | 2291197 | ID=MS.gene015674.t1.exon3;Parent=MS.gene015674.t1 |
| chr4.4 | CDS | 2291197 | 2291322 | 2291197 | ID=cds.MS.gene015674.t1;Parent=MS.gene015674.t1 |
| chr4.4 | exon | 2291427 | 2291553 | 2291427 | ID=MS.gene015674.t1.exon4;Parent=MS.gene015674.t1 |
| chr4.4 | CDS | 2291427 | 2291553 | 2291427 | ID=cds.MS.gene015674.t1;Parent=MS.gene015674.t1 |
| chr4.4 | exon | 2291936 | 2292081 | 2291936 | ID=MS.gene015674.t1.exon5;Parent=MS.gene015674.t1 |
| chr4.4 | CDS | 2291936 | 2292081 | 2291936 | ID=cds.MS.gene015674.t1;Parent=MS.gene015674.t1 |
| Gene Sequence |
| Protein sequence |
