Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29973.t1 | XP_003630920.1 | 100 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 8.50E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29973.t1 | Q93YP0 | 78.7 | 136 | 29 | 0 | 1 | 136 | 1 | 136 | 1.4e-61 | 237.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29973.t1 | A0A072TVE7 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 6.1e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052673 | MS.gene29973 | 0.831759 | 1.39E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29973 | MS.gene72976 | PPI |
| MS.gene29973 | MS.gene91501 | PPI |
| MS.gene29973 | MS.gene065711 | PPI |
| MS.gene29973 | MS.gene073110 | PPI |
| MS.gene29973 | MS.gene41103 | PPI |
| MS.gene29973 | MS.gene35346 | PPI |
| MS.gene29973 | MS.gene015674 | PPI |
| MS.gene29973 | MS.gene94636 | PPI |
| MS.gene29973 | MS.gene034818 | PPI |
| MS.gene29973 | MS.gene020503 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29973.t1 | MTR_8g105010 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 6.81e-103 | 293 |
| MS.gene29973.t1 | MTR_8g105010 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 8.90e-103 | 293 |
| MS.gene29973.t1 | MTR_1g058100 | 80.000 | 140 | 28 | 0 | 1 | 140 | 3 | 142 | 1.45e-83 | 243 |
| MS.gene29973.t1 | MTR_1g058100 | 78.873 | 142 | 28 | 1 | 1 | 140 | 3 | 144 | 1.27e-81 | 239 |
| MS.gene29973.t1 | MTR_1g058100 | 70.000 | 140 | 24 | 1 | 1 | 140 | 3 | 124 | 2.53e-66 | 199 |
| MS.gene29973.t1 | MTR_1g058100 | 81.553 | 103 | 19 | 0 | 1 | 103 | 3 | 105 | 1.04e-60 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29973.t1 | AT1G23260 | 79.286 | 140 | 29 | 0 | 1 | 140 | 1 | 140 | 5.73e-84 | 245 |
| MS.gene29973.t1 | AT1G70660 | 78.571 | 140 | 30 | 0 | 1 | 140 | 1 | 140 | 1.59e-81 | 238 |
| MS.gene29973.t1 | AT1G70660 | 78.571 | 140 | 30 | 0 | 1 | 140 | 1 | 140 | 5.51e-81 | 238 |
| MS.gene29973.t1 | AT3G52560 | 77.143 | 140 | 32 | 0 | 1 | 140 | 3 | 142 | 8.67e-81 | 236 |
| MS.gene29973.t1 | AT3G52560 | 76.596 | 141 | 32 | 1 | 1 | 140 | 3 | 143 | 5.16e-79 | 232 |
| MS.gene29973.t1 | AT2G36060 | 75.000 | 140 | 35 | 0 | 5 | 144 | 6 | 145 | 2.26e-78 | 230 |
| MS.gene29973.t1 | AT2G36060 | 74.468 | 141 | 35 | 1 | 5 | 144 | 6 | 146 | 1.42e-76 | 226 |
| MS.gene29973.t1 | AT3G52560 | 68.354 | 158 | 32 | 1 | 1 | 140 | 3 | 160 | 3.67e-76 | 226 |
| MS.gene29973.t1 | AT2G36060 | 74.286 | 140 | 35 | 1 | 5 | 144 | 6 | 144 | 6.88e-76 | 224 |
| MS.gene29973.t1 | AT1G70650 | 78.195 | 133 | 29 | 0 | 8 | 140 | 444 | 576 | 1.89e-73 | 232 |
| MS.gene29973.t1 | AT1G23260 | 76.190 | 105 | 25 | 0 | 36 | 140 | 1 | 105 | 2.37e-60 | 184 |
| MS.gene29973.t1 | AT3G52560 | 71.698 | 106 | 29 | 1 | 36 | 140 | 1 | 106 | 3.18e-54 | 168 |
Find 40 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAGGAATTTCAGATTAT+TGG | 0.156726 | 4.3:+1495741 | MS.gene29973:CDS |
| GCAAGCATGGGAAACAAATT+TGG | 0.244783 | 4.3:-1496710 | None:intergenic |
| TCATGGACTGGGACTATTAT+TGG | 0.312389 | 4.3:+1495847 | MS.gene29973:CDS |
| TAACTACCACTCCAGATTCT+TGG | 0.355892 | 4.3:-1496592 | None:intergenic |
| CTAACAGATGGTGGATTGTC+TGG | 0.370636 | 4.3:-1496536 | None:intergenic |
| ACTTGCGTCAACCAAGAATC+TGG | 0.394238 | 4.3:+1496581 | MS.gene29973:CDS |
| GAGCGAGGTGAGAAGGGAAT+TGG | 0.414625 | 4.3:+1495772 | MS.gene29973:CDS |
| CAGGAGGCTGAGATAGCTTC+CGG | 0.421676 | 4.3:-1496805 | None:intergenic |
| TGCCACAAAACAACTTCAAC+TGG | 0.424473 | 4.3:-1496505 | None:intergenic |
| ATATTCATGCAGTCATGGAC+TGG | 0.466117 | 4.3:+1495835 | MS.gene29973:CDS |
| TTGAGAGTGAAACTTTATGA+TGG | 0.467682 | 4.3:+1497311 | MS.gene29973:CDS |
| TCCAATAATCTGAAATTCCT+AGG | 0.468152 | 4.3:-1495742 | None:intergenic |
| TGTTTCCCATGCTTGCTAGT+TGG | 0.469816 | 4.3:+1496717 | MS.gene29973:CDS |
| AAATGATGTCCCCACAAAAC+CGG | 0.476684 | 4.3:+1496786 | MS.gene29973:CDS |
| AGAGCTTGAGCGAGGTGAGA+AGG | 0.483020 | 4.3:+1495765 | MS.gene29973:CDS |
| GAGCTTGAGCGAGGTGAGAA+GGG | 0.501264 | 4.3:+1495766 | MS.gene29973:CDS |
| TGTCTATCAATGCAGTTCCT+AGG | 0.505496 | 4.3:+1495725 | MS.gene29973:intron |
| GGAGACGGAACTGTTAGCTA+TGG | 0.518406 | 4.3:+1495793 | MS.gene29973:CDS |
| ATCATCAAAATGGGTTCTGA+AGG | 0.533662 | 4.3:+1493949 | None:intergenic |
| TTGAGAGTGATACTTTCTGA+TGG | 0.536022 | 4.3:-1497230 | None:intergenic |
| ATGATATATTCATGCAGTCA+TGG | 0.540165 | 4.3:+1495830 | MS.gene29973:CDS |
| TATTCATGCAGTCATGGACT+GGG | 0.545769 | 4.3:+1495836 | MS.gene29973:CDS |
| CATCTGTTAGATTTCAGACA+AGG | 0.568599 | 4.3:+1496549 | MS.gene29973:CDS |
| CTTGTCTGAAATCTAACAGA+TGG | 0.576929 | 4.3:-1496548 | None:intergenic |
| CGGAACTGTTAGCTATGGGA+TGG | 0.580756 | 4.3:+1495798 | MS.gene29973:CDS |
| GAGACGGAACTGTTAGCTAT+GGG | 0.590695 | 4.3:+1495794 | MS.gene29973:CDS |
| AAGCTATCTCAGCCTCCTGA+AGG | 0.591688 | 4.3:+1496809 | MS.gene29973:CDS |
| GTCTGAAATCTAACAGATGG+TGG | 0.615185 | 4.3:-1496545 | None:intergenic |
| TCTGAAGGATCCACCGTCGT+TGG | 0.619901 | 4.3:+1493964 | MS.gene29973:CDS |
| GGTGAGAAGGGAATTGGAGA+CGG | 0.623567 | 4.3:+1495778 | MS.gene29973:CDS |
| TTGGAAAAGAGAGTCTACAA+TGG | 0.665507 | 4.3:+1496736 | MS.gene29973:CDS |
| TTATTGGAAGAGCTTGAGCG+AGG | 0.667755 | 4.3:+1495757 | MS.gene29973:CDS |
| CGTCAACCAAGAATCTGGAG+TGG | 0.681244 | 4.3:+1496586 | MS.gene29973:CDS |
| AAGAATAGAACTTACACCCG+GGG | 0.681780 | 4.3:-1495872 | None:intergenic |
| AAGAATGACACACCTTCAGG+AGG | 0.686018 | 4.3:-1496821 | None:intergenic |
| TGGAGAATTACCAACGACGG+TGG | 0.699097 | 4.3:-1493974 | None:intergenic |
| TTATATCAGACTGTTCACGA+AGG | 0.716168 | 4.3:+1496473 | MS.gene29973:intron |
| TGTTGGAGAATTACCAACGA+CGG | 0.741066 | 4.3:-1493977 | None:intergenic |
| AGAATAGAACTTACACCCGG+GGG | 0.747089 | 4.3:-1495871 | None:intergenic |
| GAATAGAACTTACACCCGGG+GGG | 0.773466 | 4.3:-1495870 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATGTTAAACAAAAAAA+TGG | - | chr4.3:1494565-1494584 | None:intergenic | 10.0% |
| !! | AATTATAAACTTCATCAAAA+TGG | + | chr4.3:1495190-1495209 | MS.gene29973:intron | 15.0% |
| !! | ACACTAATAAATATCTAAAT+TGG | + | chr4.3:1496678-1496697 | MS.gene29973:intron | 15.0% |
| !! | ATTATAAACTTCATCAAAAT+GGG | + | chr4.3:1495191-1495210 | MS.gene29973:intron | 15.0% |
| !! | AAAAAGTAGAAAGAGATAAT+AGG | - | chr4.3:1494024-1494043 | None:intergenic | 20.0% |
| !! | AATATTGATAAGAAAACTTC+AGG | - | chr4.3:1496333-1496352 | None:intergenic | 20.0% |
| !! | AGTAAGTAAGTAAGTAAAAA+TGG | - | chr4.3:1496618-1496637 | None:intergenic | 20.0% |
| !! | AGTTATTATTCTTAAGCAAA+AGG | - | chr4.3:1495298-1495317 | None:intergenic | 20.0% |
| !! | ATTTGGATCAAATCATAATA+AGG | + | chr4.3:1495504-1495523 | MS.gene29973:intron | 20.0% |
| !! | TAATAAATATCTAAATTGGC+AGG | + | chr4.3:1496682-1496701 | MS.gene29973:intron | 20.0% |
| !! | TATGTTAAACAAAAAAATGG+CGG | - | chr4.3:1494562-1494581 | None:intergenic | 20.0% |
| !! | TTTGGATCAAATCATAATAA+GGG | + | chr4.3:1495505-1495524 | MS.gene29973:intron | 20.0% |
| !!! | AAATTAAACATCATTTTGAC+TGG | + | chr4.3:1496427-1496446 | MS.gene29973:intron | 20.0% |
| !!! | CAATCTTTCAAAAAGTTTTT+CGG | - | chr4.3:1495921-1495940 | None:intergenic | 20.0% |
| !!! | GTTTTTTTGAAATTGATCAA+GGG | + | chr4.3:1494164-1494183 | MS.gene29973:intron | 20.0% |
| !!! | TATGGGTACTTTAAAATTTA+CGG | + | chr4.3:1494645-1494664 | MS.gene29973:intron | 20.0% |
| !!! | TTTTGAAGTGAATTTTCATA+TGG | + | chr4.3:1496210-1496229 | MS.gene29973:intron | 20.0% |
| ! | AAGAAAACTTCAGGAAAATA+AGG | - | chr4.3:1496324-1496343 | None:intergenic | 25.0% |
| ! | AATGAATTTGCATCAATATC+AGG | - | chr4.3:1494200-1494219 | None:intergenic | 25.0% |
| ! | AGAAAACTTCAGGAAAATAA+GGG | - | chr4.3:1496323-1496342 | None:intergenic | 25.0% |
| ! | ATGTTAAACAAAAAAATGGC+GGG | - | chr4.3:1494561-1494580 | None:intergenic | 25.0% |
| ! | ATTTCTGTAATAAACGTAAC+AGG | + | chr4.3:1494263-1494282 | MS.gene29973:intron | 25.0% |
| ! | CATATTTCTTAGTGCATTAA+AGG | - | chr4.3:1495042-1495061 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAGCAGAAAAT+TGG | - | chr4.3:1494048-1494067 | None:intergenic | 25.0% |
| ! | GAATATAGTAAATTCGTGTA+AGG | - | chr4.3:1495556-1495575 | None:intergenic | 25.0% |
| ! | GATGAAGTTTATAATTACTC+AGG | - | chr4.3:1495186-1495205 | None:intergenic | 25.0% |
| ! | GTGCTGAAATAGTTAATATT+TGG | + | chr4.3:1495487-1495506 | MS.gene29973:intron | 25.0% |
| ! | TAACCTATTGTAGAAACTTT+AGG | + | chr4.3:1494449-1494468 | MS.gene29973:intron | 25.0% |
| ! | TTATTTATGCTCACTGTAAT+TGG | + | chr4.3:1494348-1494367 | MS.gene29973:intron | 25.0% |
| ! | TTTCTGTAATAAACGTAACA+GGG | + | chr4.3:1494264-1494283 | MS.gene29973:intron | 25.0% |
| !! | GTGACAAATTTTTATTGATC+AGG | + | chr4.3:1494994-1495013 | MS.gene29973:intron | 25.0% |
| !! | TTTGGTTGTTGTTGTATATT+AGG | + | chr4.3:1497066-1497085 | MS.gene29973:intron | 25.0% |
| !!! | CGTTTTTTTGAAATTGATCA+AGG | + | chr4.3:1494163-1494182 | MS.gene29973:intron | 25.0% |
| !!! | TTGTATTTTGATCAGAATGA+GGG | + | chr4.3:1496088-1496107 | MS.gene29973:intron | 25.0% |
| !!! | TTTGTATTTTGATCAGAATG+AGG | + | chr4.3:1496087-1496106 | MS.gene29973:intron | 25.0% |
| !!! | TTTTCTGCTTTTTTTCTTCT+TGG | + | chr4.3:1494049-1494068 | MS.gene29973:intron | 25.0% |
| !!! | TTTTTTCATCTCATCTGTTT+TGG | + | chr4.3:1494109-1494128 | MS.gene29973:intron | 25.0% |
| ACAAATTGCAAATCTACAAG+TGG | - | chr4.3:1495677-1495696 | None:intergenic | 30.0% | |
| ACTAACTCGCTTAAAAAACA+AGG | + | chr4.3:1495396-1495415 | MS.gene29973:intron | 30.0% | |
| AGCAAAAGGATACTAAAAAG+AGG | - | chr4.3:1495284-1495303 | None:intergenic | 30.0% | |
| ATAAACTTCATCAAAATGGG+TGG | + | chr4.3:1495194-1495213 | MS.gene29973:intron | 30.0% | |
| ATGATATATTCATGCAGTCA+TGG | + | chr4.3:1495830-1495849 | MS.gene29973:CDS | 30.0% | |
| CCTAAACAGTTAAAAACCAA+GGG | - | chr4.3:1494888-1494907 | None:intergenic | 30.0% | |
| CTTAAAAAACAAGGCTAGAT+TGG | + | chr4.3:1495405-1495424 | MS.gene29973:intron | 30.0% | |
| CTTAACATGTTGAAGAACAA+GGG | - | chr4.3:1494856-1494875 | None:intergenic | 30.0% | |
| GGAAATGAAAATAGAAGTGA+AGG | - | chr4.3:1494003-1494022 | None:intergenic | 30.0% | |
| GTGAATTGTTGACCAAAATA+GGG | - | chr4.3:1496004-1496023 | None:intergenic | 30.0% | |
| TCCTAGGAATTTCAGATTAT+TGG | + | chr4.3:1495741-1495760 | MS.gene29973:CDS | 30.0% | |
| TCTCAAATCTTATTGCTTCA+GGG | + | chr4.3:1495118-1495137 | MS.gene29973:intron | 30.0% | |
| TCTTAACATGTTGAAGAACA+AGG | - | chr4.3:1494857-1494876 | None:intergenic | 30.0% | |
| TGTGAATTGTTGACCAAAAT+AGG | - | chr4.3:1496005-1496024 | None:intergenic | 30.0% | |
| TGTTAAACAAAAAAATGGCG+GGG | - | chr4.3:1494560-1494579 | None:intergenic | 30.0% | |
| TTCTTCTTATAGTGACTGTA+TGG | + | chr4.3:1496945-1496964 | MS.gene29973:intron | 30.0% | |
| TTGAGAGTGAAACTTTATGA+TGG | + | chr4.3:1497311-1497330 | MS.gene29973:CDS | 30.0% | |
| ! | AATTTTTATTGATCAGGAGC+AGG | + | chr4.3:1495000-1495019 | MS.gene29973:intron | 30.0% |
| ! | GAAATATGTTGTAACTTGCA+TGG | + | chr4.3:1495054-1495073 | MS.gene29973:intron | 30.0% |
| ! | TCCAATAATCTGAAATTCCT+AGG | - | chr4.3:1495745-1495764 | None:intergenic | 30.0% |
| ! | TTAAAGTACCCATACTTCAA+AGG | - | chr4.3:1494639-1494658 | None:intergenic | 30.0% |
| !! | CCTTGGTTTTTAACTGTTTA+GGG | + | chr4.3:1494886-1494905 | MS.gene29973:intron | 30.0% |
| !! | TATTAGGACCTTTGAAGTAT+GGG | + | chr4.3:1494628-1494647 | MS.gene29973:intron | 30.0% |
| !! | TTATTAGGACCTTTGAAGTA+TGG | + | chr4.3:1494627-1494646 | MS.gene29973:intron | 30.0% |
| !!! | AACTGTTTAGGGCTTTTTTT+TGG | + | chr4.3:1494897-1494916 | MS.gene29973:intron | 30.0% |
| !!! | CATAAGTTCTGTGTTTTTTC+TGG | + | chr4.3:1496911-1496930 | MS.gene29973:intron | 30.0% |
| !!! | CTTTTTAGCTTCTTCAAAAG+TGG | + | chr4.3:1496182-1496201 | MS.gene29973:intron | 30.0% |
| !!! | TCTCTATTTTTGCCCTATTT+TGG | + | chr4.3:1495989-1496008 | MS.gene29973:intron | 30.0% |
| !!! | TGTATTTTGATCAGAATGAG+GGG | + | chr4.3:1496089-1496108 | MS.gene29973:intron | 30.0% |
| AAAGAATAGAACTTACACCC+GGG | - | chr4.3:1495876-1495895 | None:intergenic | 35.0% | |
| AACAGGATTCCAGAAGTTAT+TGG | - | chr4.3:1495452-1495471 | None:intergenic | 35.0% | |
| AATAAGAATGACACACCTTC+AGG | - | chr4.3:1496827-1496846 | None:intergenic | 35.0% | |
| AATTACTCAGGTTACCAATG+AGG | - | chr4.3:1495174-1495193 | None:intergenic | 35.0% | |
| ACAAGCTCATCCATTTATCT+GGG | + | chr4.3:1494598-1494617 | MS.gene29973:intron | 35.0% | |
| ACATTTGTAATCTCCAGAGT+AGG | - | chr4.3:1497183-1497202 | None:intergenic | 35.0% | |
| AGAAGTTATTGGTCCAATTC+AGG | - | chr4.3:1495441-1495460 | None:intergenic | 35.0% | |
| AGTTCCTGAGAGTTCTTTAT+GGG | + | chr4.3:1495250-1495269 | MS.gene29973:intron | 35.0% | |
| CAAAGAATAGAACTTACACC+CGG | - | chr4.3:1495877-1495896 | None:intergenic | 35.0% | |
| CATCTGTTAGATTTCAGACA+AGG | + | chr4.3:1496549-1496568 | MS.gene29973:CDS | 35.0% | |
| CATGTTAGCTACAAATGACA+AGG | - | chr4.3:1496238-1496257 | None:intergenic | 35.0% | |
| CATTAATTGTCAACCTACTC+TGG | + | chr4.3:1497167-1497186 | MS.gene29973:intron | 35.0% | |
| CCCTAAACAGTTAAAAACCA+AGG | - | chr4.3:1494889-1494908 | None:intergenic | 35.0% | |
| CTCAAATCTTATTGCTTCAG+GGG | + | chr4.3:1495119-1495138 | MS.gene29973:intron | 35.0% | |
| CTGCCTAAAGTTTCTACAAT+AGG | - | chr4.3:1494455-1494474 | None:intergenic | 35.0% | |
| CTTTAGTCAATCAACAATCG+CGG | + | chr4.3:1494676-1494695 | MS.gene29973:intron | 35.0% | |
| GTCTCAAATCTTATTGCTTC+AGG | + | chr4.3:1495117-1495136 | MS.gene29973:intron | 35.0% | |
| GTGATCTAAATCATGAAAGC+TGG | + | chr4.3:1495370-1495389 | MS.gene29973:intron | 35.0% | |
| GTTGTATATTAGGTAACCAC+TGG | + | chr4.3:1497076-1497095 | MS.gene29973:intron | 35.0% | |
| TACAAGCTCATCCATTTATC+TGG | + | chr4.3:1494597-1494616 | MS.gene29973:intron | 35.0% | |
| TAGTTCCTGAGAGTTCTTTA+TGG | + | chr4.3:1495249-1495268 | MS.gene29973:intron | 35.0% | |
| TCACTTAGTGGGATATAGTT+TGG | + | chr4.3:1497048-1497067 | MS.gene29973:intron | 35.0% | |
| TGAATTGGACCAATAACTTC+TGG | + | chr4.3:1495440-1495459 | MS.gene29973:intron | 35.0% | |
| TGTGAAATTACTGCATCAGT+TGG | + | chr4.3:1497131-1497150 | MS.gene29973:intron | 35.0% | |
| TGTTAAGACAAAAATGCCCT+TGG | + | chr4.3:1494869-1494888 | MS.gene29973:intron | 35.0% | |
| TTATATCAGACTGTTCACGA+AGG | + | chr4.3:1496473-1496492 | MS.gene29973:intron | 35.0% | |
| TTCATCACTGTCCAAATTTG+TGG | + | chr4.3:1497004-1497023 | MS.gene29973:intron | 35.0% | |
| TTGAGAGTGATACTTTCTGA+TGG | - | chr4.3:1497233-1497252 | None:intergenic | 35.0% | |
| TTGGAAAAGAGAGTCTACAA+TGG | + | chr4.3:1496736-1496755 | MS.gene29973:CDS | 35.0% | |
| ! | ATATCCAGCATAAGTTGACA+AGG | - | chr4.3:1496032-1496051 | None:intergenic | 35.0% |
| ! | CTTGTCTGAAATCTAACAGA+TGG | - | chr4.3:1496551-1496570 | None:intergenic | 35.0% |
| ! | CTTTGGAAACTAAGTGGTTA+TGG | + | chr4.3:1496144-1496163 | MS.gene29973:intron | 35.0% |
| ! | GAAAATAGAAGTGAAGGTGT+TGG | - | chr4.3:1493997-1494016 | None:intergenic | 35.0% |
| ! | GTTTTCTTTTGGATCCTCAT+TGG | + | chr4.3:1495157-1495176 | MS.gene29973:intron | 35.0% |
| ! | TAACCACTGGTTGTCTAATA+TGG | + | chr4.3:1497089-1497108 | MS.gene29973:intron | 35.0% |
| ! | TTGGGTTTGATGTTTTGCTT+TGG | + | chr4.3:1496127-1496146 | MS.gene29973:intron | 35.0% |
| !! | AATAACTTCTGGAATCCTGT+TGG | + | chr4.3:1495451-1495470 | MS.gene29973:intron | 35.0% |
| !! | ATAACTTCTGGAATCCTGTT+GGG | + | chr4.3:1495452-1495471 | MS.gene29973:intron | 35.0% |
| !! | ATTCTGTGCATGGCTTTAAT+TGG | - | chr4.3:1496364-1496383 | None:intergenic | 35.0% |
| !! | CCCTTGGTTTTTAACTGTTT+AGG | + | chr4.3:1494885-1494904 | MS.gene29973:intron | 35.0% |
| !! | TACCAGTTGAAGTTGTTTTG+TGG | + | chr4.3:1496503-1496522 | MS.gene29973:CDS | 35.0% |
| !! | TTCTGTGCATGGCTTTAATT+GGG | - | chr4.3:1496363-1496382 | None:intergenic | 35.0% |
| !!! | GTTTTGCTTTGGAAACTAAG+TGG | + | chr4.3:1496138-1496157 | MS.gene29973:intron | 35.0% |
| !!! | TCGAACAGCTTTTAACTTCT+CGG | + | chr4.3:1497282-1497301 | MS.gene29973:CDS | 35.0% |
| !!! | TCTGCTTTTTTTCTTCTTGG+TGG | + | chr4.3:1494052-1494071 | MS.gene29973:intron | 35.0% |
| !!! | TTGTTGGAAGCGTTTTCTTT+TGG | + | chr4.3:1495146-1495165 | MS.gene29973:intron | 35.0% |
| AAATGATGTCCCCACAAAAC+CGG | + | chr4.3:1496786-1496805 | MS.gene29973:CDS | 40.0% | |
| AAGAATAGAACTTACACCCG+GGG | - | chr4.3:1495875-1495894 | None:intergenic | 40.0% | |
| AATTCCTAAAGCAGTGTAGC+GGG | - | chr4.3:1494974-1494993 | None:intergenic | 40.0% | |
| ACACCATATTAGACAACCAG+TGG | - | chr4.3:1497095-1497114 | None:intergenic | 40.0% | |
| ACATAGTAGACGAGCAGAAA+AGG | + | chr4.3:1494822-1494841 | MS.gene29973:intron | 40.0% | |
| ACTTGGCAACTCACAAGTAT+TGG | + | chr4.3:1495333-1495352 | MS.gene29973:intron | 40.0% | |
| AGGGCAAAAATAGAGAACTG+TGG | - | chr4.3:1495985-1496004 | None:intergenic | 40.0% | |
| ATAACCACAGCCCAGATAAA+TGG | - | chr4.3:1494611-1494630 | None:intergenic | 40.0% | |
| ATATCCCACTAAGTGAAGTG+AGG | - | chr4.3:1497044-1497063 | None:intergenic | 40.0% | |
| ATATTCATGCAGTCATGGAC+TGG | + | chr4.3:1495835-1495854 | MS.gene29973:CDS | 40.0% | |
| CAATTCCTAAAGCAGTGTAG+CGG | - | chr4.3:1494975-1494994 | None:intergenic | 40.0% | |
| CTACAATAGGTTAACTGAGC+AGG | - | chr4.3:1494442-1494461 | None:intergenic | 40.0% | |
| CTGGTTGTCTAATATGGTGT+TGG | + | chr4.3:1497095-1497114 | MS.gene29973:intron | 40.0% | |
| CTTCAGGAAAATAAGGGTCT+AGG | - | chr4.3:1496317-1496336 | None:intergenic | 40.0% | |
| CTTCTGTTGTGTACCAAACT+TGG | + | chr4.3:1495316-1495335 | MS.gene29973:intron | 40.0% | |
| GCAAGCATGGGAAACAAATT+TGG | - | chr4.3:1496713-1496732 | None:intergenic | 40.0% | |
| GGTTGAGCAAATCTATGTTG+CGG | + | chr4.3:1494750-1494769 | MS.gene29973:intron | 40.0% | |
| GTTCCTGAGAGTTCTTTATG+GGG | + | chr4.3:1495251-1495270 | MS.gene29973:intron | 40.0% | |
| TAACTACCACTCCAGATTCT+TGG | - | chr4.3:1496595-1496614 | None:intergenic | 40.0% | |
| TACTTGTGAGTTGCCAAGTT+TGG | - | chr4.3:1495332-1495351 | None:intergenic | 40.0% | |
| TATTCATGCAGTCATGGACT+GGG | + | chr4.3:1495836-1495855 | MS.gene29973:CDS | 40.0% | |
| TCATCCTTGTCAACTTATGC+TGG | + | chr4.3:1496025-1496044 | MS.gene29973:intron | 40.0% | |
| TCCATTGTAGCAGTTGCTAT+AGG | + | chr4.3:1496888-1496907 | MS.gene29973:intron | 40.0% | |
| TGCCACAAAACAACTTCAAC+TGG | - | chr4.3:1496508-1496527 | None:intergenic | 40.0% | |
| TGGTTACTCTTGACCTGAAT+TGG | + | chr4.3:1495425-1495444 | MS.gene29973:intron | 40.0% | |
| TGTAAGGAAATGCACACTCT+TGG | - | chr4.3:1495540-1495559 | None:intergenic | 40.0% | |
| TGTCTATCAATGCAGTTCCT+AGG | + | chr4.3:1495725-1495744 | MS.gene29973:intron | 40.0% | |
| TGTTGGAGAATTACCAACGA+CGG | - | chr4.3:1493980-1493999 | None:intergenic | 40.0% | |
| TTATCTGGGCTGTGGTTATT+AGG | + | chr4.3:1494612-1494631 | MS.gene29973:intron | 40.0% | |
| TTCCTGAGAGTTCTTTATGG+GGG | + | chr4.3:1495252-1495271 | MS.gene29973:intron | 40.0% | |
| TTGCTTCAGGGGTTATTTGT+TGG | + | chr4.3:1495130-1495149 | MS.gene29973:intron | 40.0% | |
| ! | AGGAGCAGGAAATTTTAGAC+GGG | + | chr4.3:1495014-1495033 | MS.gene29973:intron | 40.0% |
| ! | ATTTGAGACACCAGATTCTC+AGG | - | chr4.3:1495106-1495125 | None:intergenic | 40.0% |
| ! | CAGGAGCAGGAAATTTTAGA+CGG | + | chr4.3:1495013-1495032 | MS.gene29973:intron | 40.0% |
| ! | CTTTTCCAACTAGCAAGCAT+GGG | - | chr4.3:1496725-1496744 | None:intergenic | 40.0% |
| ! | GTCTGAAATCTAACAGATGG+TGG | - | chr4.3:1496548-1496567 | None:intergenic | 40.0% |
| ! | TCTTTTCCAACTAGCAAGCA+TGG | - | chr4.3:1496726-1496745 | None:intergenic | 40.0% |
| ! | TGTGCTGATCTCTAGTTGTT+AGG | + | chr4.3:1496387-1496406 | MS.gene29973:intron | 40.0% |
| ! | TTTGAGACACCAGATTCTCA+GGG | - | chr4.3:1495105-1495124 | None:intergenic | 40.0% |
| !! | GTTGAAGTTGTTTTGTGGCA+AGG | + | chr4.3:1496508-1496527 | MS.gene29973:CDS | 40.0% |
| !! | TAACTTCTGGAATCCTGTTG+GGG | + | chr4.3:1495453-1495472 | MS.gene29973:intron | 40.0% |
| !! | TCATGGACTGGGACTATTAT+TGG | + | chr4.3:1495847-1495866 | MS.gene29973:CDS | 40.0% |
| !! | TCTGTGCATGGCTTTAATTG+GGG | - | chr4.3:1496362-1496381 | None:intergenic | 40.0% |
| AAGAATGACACACCTTCAGG+AGG | - | chr4.3:1496824-1496843 | None:intergenic | 45.0% | |
| ACCAAAGTTATAGCCCCAAC+AGG | - | chr4.3:1495469-1495488 | None:intergenic | 45.0% | |
| ACCAACCTCACTTCACTTAG+TGG | + | chr4.3:1497036-1497055 | MS.gene29973:intron | 45.0% | |
| ACTTGCGTCAACCAAGAATC+TGG | + | chr4.3:1496581-1496600 | MS.gene29973:CDS | 45.0% | |
| AGAATAGAACTTACACCCGG+GGG | - | chr4.3:1495874-1495893 | None:intergenic | 45.0% | |
| AGGAAATGCACACTCTTGGA+CGG | - | chr4.3:1495536-1495555 | None:intergenic | 45.0% | |
| AGTTAAGGAGCGGAGTGATA+AGG | - | chr4.3:1494513-1494532 | None:intergenic | 45.0% | |
| ATGTAAAACAACGTGGTGGC+TGG | + | chr4.3:1494729-1494748 | MS.gene29973:intron | 45.0% | |
| CAGCACATGAATTCTGTGCA+TGG | - | chr4.3:1496374-1496393 | None:intergenic | 45.0% | |
| CAGCGCTATGTAAAACAACG+TGG | + | chr4.3:1494722-1494741 | MS.gene29973:intron | 45.0% | |
| CCAACCTCACTTCACTTAGT+GGG | + | chr4.3:1497037-1497056 | MS.gene29973:intron | 45.0% | |
| CGCTATGTAAAACAACGTGG+TGG | + | chr4.3:1494725-1494744 | MS.gene29973:intron | 45.0% | |
| CTGTCCAAATTTGTGGACAG+TGG | + | chr4.3:1497011-1497030 | MS.gene29973:intron | 45.0% | |
| GAGACGGAACTGTTAGCTAT+GGG | + | chr4.3:1495794-1495813 | MS.gene29973:CDS | 45.0% | |
| GATATAACGTTGGTCAGGGT+GGG | - | chr4.3:1494538-1494557 | None:intergenic | 45.0% | |
| GCCTATAGCAACTGCTACAA+TGG | - | chr4.3:1496892-1496911 | None:intergenic | 45.0% | |
| GTGGTTGCTTGCTTGTGTAT+AGG | + | chr4.3:1494071-1494090 | MS.gene29973:intron | 45.0% | |
| GTGTCCACTGTCCACAAATT+TGG | - | chr4.3:1497018-1497037 | None:intergenic | 45.0% | |
| GTTAAGGAGCGGAGTGATAA+GGG | - | chr4.3:1494512-1494531 | None:intergenic | 45.0% | |
| TAGTCAATCAACAATCGCGG+TGG | + | chr4.3:1494679-1494698 | MS.gene29973:intron | 45.0% | |
| TCATCCATTTATCTGGGCTG+TGG | + | chr4.3:1494604-1494623 | MS.gene29973:intron | 45.0% | |
| TCCTGTTGGGGCTATAACTT+TGG | + | chr4.3:1495465-1495484 | MS.gene29973:intron | 45.0% | |
| TTAAGGAGCGGAGTGATAAG+GGG | - | chr4.3:1494511-1494530 | None:intergenic | 45.0% | |
| TTATTGGAAGAGCTTGAGCG+AGG | + | chr4.3:1495757-1495776 | MS.gene29973:CDS | 45.0% | |
| ! | AAATGGCGGGGATATAACGT+TGG | - | chr4.3:1494548-1494567 | None:intergenic | 45.0% |
| ! | GGAGCAGGAAATTTTAGACG+GGG | + | chr4.3:1495015-1495034 | MS.gene29973:intron | 45.0% |
| ! | GTTGTAACTTGCATGGTGTG+TGG | + | chr4.3:1495061-1495080 | MS.gene29973:intron | 45.0% |
| ! | TAACTTGCATGGTGTGTGGA+GGG | + | chr4.3:1495065-1495084 | MS.gene29973:intron | 45.0% |
| ! | TGAGATAGCTTCCGGTTTTG+TGG | - | chr4.3:1496800-1496819 | None:intergenic | 45.0% |
| ! | TGTTTCCCATGCTTGCTAGT+TGG | + | chr4.3:1496717-1496736 | MS.gene29973:CDS | 45.0% |
| !! | AGATAGCTTCCGGTTTTGTG+GGG | - | chr4.3:1496798-1496817 | None:intergenic | 45.0% |
| !! | CACGTTGTTTTACATAGCGC+TGG | - | chr4.3:1494724-1494743 | None:intergenic | 45.0% |
| !! | CTAACAGATGGTGGATTGTC+TGG | - | chr4.3:1496539-1496558 | None:intergenic | 45.0% |
| !! | GAGATAGCTTCCGGTTTTGT+GGG | - | chr4.3:1496799-1496818 | None:intergenic | 45.0% |
| AACTTGCATGGTGTGTGGAG+GGG | + | chr4.3:1495066-1495085 | MS.gene29973:intron | 50.0% | |
| AAGCTATCTCAGCCTCCTGA+AGG | + | chr4.3:1496809-1496828 | MS.gene29973:CDS | 50.0% | |
| CCCACTAAGTGAAGTGAGGT+TGG | - | chr4.3:1497040-1497059 | None:intergenic | 50.0% | |
| CGGAACTGTTAGCTATGGGA+TGG | + | chr4.3:1495798-1495817 | MS.gene29973:CDS | 50.0% | |
| CGGGGATATAACGTTGGTCA+GGG | - | chr4.3:1494542-1494561 | None:intergenic | 50.0% | |
| CGGTGGTACTTGATGTAGTG+GGG | + | chr4.3:1494696-1494715 | MS.gene29973:intron | 50.0% | |
| CGTCAACCAAGAATCTGGAG+TGG | + | chr4.3:1496586-1496605 | MS.gene29973:CDS | 50.0% | |
| GAATAGAACTTACACCCGGG+GGG | - | chr4.3:1495873-1495892 | None:intergenic | 50.0% | |
| GAGTGATAAGGGGTGATCTC+GGG | - | chr4.3:1494501-1494520 | None:intergenic | 50.0% | |
| GCGGTGGTACTTGATGTAGT+GGG | + | chr4.3:1494695-1494714 | MS.gene29973:intron | 50.0% | |
| GGAGAAAGTCGCAATGCAGT+GGG | - | chr4.3:1494953-1494972 | None:intergenic | 50.0% | |
| GGAGACGGAACTGTTAGCTA+TGG | + | chr4.3:1495793-1495812 | MS.gene29973:CDS | 50.0% | |
| GGAGTGATAAGGGGTGATCT+CGG | - | chr4.3:1494502-1494521 | None:intergenic | 50.0% | |
| GGATATAACGTTGGTCAGGG+TGG | - | chr4.3:1494539-1494558 | None:intergenic | 50.0% | |
| GGTGAGAAGGGAATTGGAGA+CGG | + | chr4.3:1495778-1495797 | MS.gene29973:CDS | 50.0% | |
| TGCCCCCATAAAGAACTCTC+AGG | - | chr4.3:1495257-1495276 | None:intergenic | 50.0% | |
| TGGAGAATTACCAACGACGG+TGG | - | chr4.3:1493977-1493996 | None:intergenic | 50.0% | |
| TGGGTGGCATGTCATTCTTG+AGG | + | chr4.3:1495210-1495229 | MS.gene29973:intron | 50.0% | |
| TTAGGCAGCATGCTCTTGTG+TGG | + | chr4.3:1494467-1494486 | MS.gene29973:intron | 50.0% | |
| TTCTCCCGCTACACTGCTTT+AGG | + | chr4.3:1494967-1494986 | MS.gene29973:intron | 50.0% | |
| TTGGACCTTCTGTGTGACTC+CGG | + | chr4.3:1494916-1494935 | MS.gene29973:intron | 50.0% | |
| ! | GTAACTTGCATGGTGTGTGG+AGG | + | chr4.3:1495064-1495083 | MS.gene29973:intron | 50.0% |
| ACTTGCATGGTGTGTGGAGG+GGG | + | chr4.3:1495067-1495086 | MS.gene29973:intron | 55.0% | |
| AGAGCTTGAGCGAGGTGAGA+AGG | + | chr4.3:1495765-1495784 | MS.gene29973:CDS | 55.0% | |
| AGGGTGGGAGAGTTAAGGAG+CGG | - | chr4.3:1494523-1494542 | None:intergenic | 55.0% | |
| ATTCGGCCACCCTGAGAATC+TGG | + | chr4.3:1495093-1495112 | MS.gene29973:intron | 55.0% | |
| CAGGAGGCTGAGATAGCTTC+CGG | - | chr4.3:1496808-1496827 | None:intergenic | 55.0% | |
| CGCGGTGGTACTTGATGTAG+TGG | + | chr4.3:1494694-1494713 | MS.gene29973:intron | 55.0% | |
| GAGACACCAGATTCTCAGGG+TGG | - | chr4.3:1495102-1495121 | None:intergenic | 55.0% | |
| GAGCGAGGTGAGAAGGGAAT+TGG | + | chr4.3:1495772-1495791 | MS.gene29973:CDS | 55.0% | |
| GAGCTTGAGCGAGGTGAGAA+GGG | + | chr4.3:1495766-1495785 | MS.gene29973:CDS | 55.0% | |
| GCGGGGATATAACGTTGGTC+AGG | - | chr4.3:1494543-1494562 | None:intergenic | 55.0% | |
| GGGAGAAAGTCGCAATGCAG+TGG | - | chr4.3:1494954-1494973 | None:intergenic | 55.0% | |
| GGGTGTGCGCTGTGTGTATT+GGG | + | chr4.3:1496109-1496128 | MS.gene29973:intron | 55.0% | |
| TCTGAAGGATCCACCGTCGT+TGG | + | chr4.3:1493964-1493983 | MS.gene29973:CDS | 55.0% | |
| TGGGACTATTATTGGCCCCC+CGG | + | chr4.3:1495855-1495874 | MS.gene29973:CDS | 55.0% | |
| TGGTCAGGGTGGGAGAGTTA+AGG | - | chr4.3:1494528-1494547 | None:intergenic | 55.0% | |
| ! | GTGTGTGGAGGGGGTTGATT+CGG | + | chr4.3:1495076-1495095 | MS.gene29973:intron | 55.0% |
| GCTTGCCGGAGTCACACAGA+AGG | - | chr4.3:1494924-1494943 | None:intergenic | 60.0% | |
| GGGACTATTATTGGCCCCCC+GGG | + | chr4.3:1495856-1495875 | MS.gene29973:CDS | 60.0% | |
| GGGGTGTGCGCTGTGTGTAT+TGG | + | chr4.3:1496108-1496127 | MS.gene29973:intron | 60.0% | |
| GTCGCAATGCAGTGGGTACC+AGG | - | chr4.3:1494946-1494965 | None:intergenic | 60.0% | |
| CGCCGCCACACACAGTGCTA+CGG | - | chr4.3:1494776-1494795 | None:intergenic | 65.0% | |
| CTGTGTGACTCCGGCAAGCC+TGG | + | chr4.3:1494925-1494944 | MS.gene29973:intron | 65.0% | |
| GCAGTGGGTACCAGGCTTGC+CGG | - | chr4.3:1494938-1494957 | None:intergenic | 65.0% | |
| GGCCGTAGCACTGTGTGTGG+CGG | + | chr4.3:1494771-1494790 | MS.gene29973:intron | 65.0% | |
| TGCGGCCGTAGCACTGTGTG+TGG | + | chr4.3:1494768-1494787 | MS.gene29973:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1493958 | 1497358 | 1493958 | ID=MS.gene29973 |
| chr4.3 | mRNA | 1493958 | 1497358 | 1493958 | ID=MS.gene29973.t1;Parent=MS.gene29973 |
| chr4.3 | exon | 1493958 | 1493985 | 1493958 | ID=MS.gene29973.t1.exon1;Parent=MS.gene29973.t1 |
| chr4.3 | CDS | 1493958 | 1493985 | 1493958 | ID=cds.MS.gene29973.t1;Parent=MS.gene29973.t1 |
| chr4.3 | exon | 1495740 | 1495879 | 1495740 | ID=MS.gene29973.t1.exon2;Parent=MS.gene29973.t1 |
| chr4.3 | CDS | 1495740 | 1495879 | 1495740 | ID=cds.MS.gene29973.t1;Parent=MS.gene29973.t1 |
| chr4.3 | exon | 1496482 | 1496607 | 1496482 | ID=MS.gene29973.t1.exon3;Parent=MS.gene29973.t1 |
| chr4.3 | CDS | 1496482 | 1496607 | 1496482 | ID=cds.MS.gene29973.t1;Parent=MS.gene29973.t1 |
| chr4.3 | exon | 1496704 | 1496830 | 1496704 | ID=MS.gene29973.t1.exon4;Parent=MS.gene29973.t1 |
| chr4.3 | CDS | 1496704 | 1496830 | 1496704 | ID=cds.MS.gene29973.t1;Parent=MS.gene29973.t1 |
| chr4.3 | exon | 1497213 | 1497358 | 1497213 | ID=MS.gene29973.t1.exon5;Parent=MS.gene29973.t1 |
| chr4.3 | CDS | 1497213 | 1497358 | 1497213 | ID=cds.MS.gene29973.t1;Parent=MS.gene29973.t1 |
| Gene Sequence |
| Protein sequence |
