Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020503.t1 | XP_003630920.1 | 100 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 8.50E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020503.t1 | Q93YP0 | 78.7 | 136 | 29 | 0 | 1 | 136 | 1 | 136 | 1.4e-61 | 237.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020503.t1 | A0A072TVE7 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 6.1e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020503 | MS.gene35346 | PPI |
| MS.gene020503 | MS.gene015674 | PPI |
| MS.gene020503 | MS.gene94636 | PPI |
| MS.gene034818 | MS.gene020503 | PPI |
| MS.gene020503 | MS.gene72976 | PPI |
| MS.gene41103 | MS.gene020503 | PPI |
| MS.gene91501 | MS.gene020503 | PPI |
| MS.gene065711 | MS.gene020503 | PPI |
| MS.gene073110 | MS.gene020503 | PPI |
| MS.gene29973 | MS.gene020503 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020503.t1 | MTR_8g105010 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 6.81e-103 | 293 |
| MS.gene020503.t1 | MTR_8g105010 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 8.90e-103 | 293 |
| MS.gene020503.t1 | MTR_1g058100 | 80.000 | 140 | 28 | 0 | 1 | 140 | 3 | 142 | 1.45e-83 | 243 |
| MS.gene020503.t1 | MTR_1g058100 | 78.873 | 142 | 28 | 1 | 1 | 140 | 3 | 144 | 1.27e-81 | 239 |
| MS.gene020503.t1 | MTR_1g058100 | 70.000 | 140 | 24 | 1 | 1 | 140 | 3 | 124 | 2.53e-66 | 199 |
| MS.gene020503.t1 | MTR_1g058100 | 81.553 | 103 | 19 | 0 | 1 | 103 | 3 | 105 | 1.04e-60 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020503.t1 | AT1G23260 | 79.286 | 140 | 29 | 0 | 1 | 140 | 1 | 140 | 5.73e-84 | 245 |
| MS.gene020503.t1 | AT1G70660 | 78.571 | 140 | 30 | 0 | 1 | 140 | 1 | 140 | 1.59e-81 | 238 |
| MS.gene020503.t1 | AT1G70660 | 78.571 | 140 | 30 | 0 | 1 | 140 | 1 | 140 | 5.51e-81 | 238 |
| MS.gene020503.t1 | AT3G52560 | 77.143 | 140 | 32 | 0 | 1 | 140 | 3 | 142 | 8.67e-81 | 236 |
| MS.gene020503.t1 | AT3G52560 | 76.596 | 141 | 32 | 1 | 1 | 140 | 3 | 143 | 5.16e-79 | 232 |
| MS.gene020503.t1 | AT2G36060 | 75.000 | 140 | 35 | 0 | 5 | 144 | 6 | 145 | 2.26e-78 | 230 |
| MS.gene020503.t1 | AT2G36060 | 74.468 | 141 | 35 | 1 | 5 | 144 | 6 | 146 | 1.42e-76 | 226 |
| MS.gene020503.t1 | AT3G52560 | 68.354 | 158 | 32 | 1 | 1 | 140 | 3 | 160 | 3.67e-76 | 226 |
| MS.gene020503.t1 | AT2G36060 | 74.286 | 140 | 35 | 1 | 5 | 144 | 6 | 144 | 6.88e-76 | 224 |
| MS.gene020503.t1 | AT1G70650 | 78.195 | 133 | 29 | 0 | 8 | 140 | 444 | 576 | 1.89e-73 | 232 |
| MS.gene020503.t1 | AT1G23260 | 76.190 | 105 | 25 | 0 | 36 | 140 | 1 | 105 | 2.37e-60 | 184 |
| MS.gene020503.t1 | AT3G52560 | 71.698 | 106 | 29 | 1 | 36 | 140 | 1 | 106 | 3.18e-54 | 168 |
Find 40 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAGGAATTTCAGATTAT+TGG | 0.156726 | 4.1:+1849964 | MS.gene020503:CDS |
| GCAAGCATGGGAAACAAATT+TGG | 0.244783 | 4.1:-1850933 | None:intergenic |
| TCATGGACTGGGACTATTAT+TGG | 0.312389 | 4.1:+1850070 | MS.gene020503:CDS |
| TAACTACCACTCCAGATTCT+TGG | 0.355892 | 4.1:-1850815 | None:intergenic |
| CTAACAGATGGTGGATTGTC+TGG | 0.370636 | 4.1:-1850759 | None:intergenic |
| ACTTGCGTCAACCAAGAATC+TGG | 0.394238 | 4.1:+1850804 | MS.gene020503:CDS |
| GAGCGAGGTGAGAAGGGAAT+TGG | 0.414625 | 4.1:+1849995 | MS.gene020503:CDS |
| CAGGAGGCTGAGATAGCTTC+CGG | 0.421676 | 4.1:-1851028 | None:intergenic |
| TGCCACAAAACAACTTCAAC+TGG | 0.424473 | 4.1:-1850728 | None:intergenic |
| ATATTCATGCAGTCATGGAC+TGG | 0.466117 | 4.1:+1850058 | MS.gene020503:CDS |
| TTGAGAGTGAAACTTTATGA+TGG | 0.467682 | 4.1:+1851534 | MS.gene020503:CDS |
| TCCAATAATCTGAAATTCCT+AGG | 0.468152 | 4.1:-1849965 | None:intergenic |
| TGTTTCCCATGCTTGCTAGT+TGG | 0.469816 | 4.1:+1850940 | MS.gene020503:CDS |
| AAATGATGTCCCCACAAAAC+CGG | 0.476684 | 4.1:+1851009 | MS.gene020503:CDS |
| AGAGCTTGAGCGAGGTGAGA+AGG | 0.483020 | 4.1:+1849988 | MS.gene020503:CDS |
| GAGCTTGAGCGAGGTGAGAA+GGG | 0.501264 | 4.1:+1849989 | MS.gene020503:CDS |
| TGTCTATCAATGCAGTTCCT+AGG | 0.505496 | 4.1:+1849948 | MS.gene020503:intron |
| GGAGACGGAACTGTTAGCTA+TGG | 0.518406 | 4.1:+1850016 | MS.gene020503:CDS |
| ATCATCAAAATGGGTTCTGA+AGG | 0.533662 | 4.1:+1848172 | None:intergenic |
| TTGAGAGTGATACTTTCTGA+TGG | 0.536022 | 4.1:-1851453 | None:intergenic |
| ATGATATATTCATGCAGTCA+TGG | 0.540165 | 4.1:+1850053 | MS.gene020503:CDS |
| TATTCATGCAGTCATGGACT+GGG | 0.545769 | 4.1:+1850059 | MS.gene020503:CDS |
| CATCTGTTAGATTTCAGACA+AGG | 0.568599 | 4.1:+1850772 | MS.gene020503:CDS |
| CTTGTCTGAAATCTAACAGA+TGG | 0.576929 | 4.1:-1850771 | None:intergenic |
| CGGAACTGTTAGCTATGGGA+TGG | 0.580756 | 4.1:+1850021 | MS.gene020503:CDS |
| GAGACGGAACTGTTAGCTAT+GGG | 0.590695 | 4.1:+1850017 | MS.gene020503:CDS |
| AAGCTATCTCAGCCTCCTGA+AGG | 0.591688 | 4.1:+1851032 | MS.gene020503:CDS |
| GTCTGAAATCTAACAGATGG+TGG | 0.615185 | 4.1:-1850768 | None:intergenic |
| TCTGAAGGATCCACCGTCGT+TGG | 0.619901 | 4.1:+1848187 | MS.gene020503:CDS |
| GGTGAGAAGGGAATTGGAGA+CGG | 0.623567 | 4.1:+1850001 | MS.gene020503:CDS |
| TTGGAAAAGAGAGTCTACAA+TGG | 0.665507 | 4.1:+1850959 | MS.gene020503:CDS |
| TTATTGGAAGAGCTTGAGCG+AGG | 0.667755 | 4.1:+1849980 | MS.gene020503:CDS |
| CGTCAACCAAGAATCTGGAG+TGG | 0.681244 | 4.1:+1850809 | MS.gene020503:CDS |
| AAGAATAGAACTTACACCCG+GGG | 0.681780 | 4.1:-1850095 | None:intergenic |
| AAGAATGACACACCTTCAGG+AGG | 0.686018 | 4.1:-1851044 | None:intergenic |
| TGGAGAATTACCAACGACGG+TGG | 0.699097 | 4.1:-1848197 | None:intergenic |
| TTATATCAGACTGTTCACGA+AGG | 0.716168 | 4.1:+1850696 | MS.gene020503:intron |
| TGTTGGAGAATTACCAACGA+CGG | 0.741066 | 4.1:-1848200 | None:intergenic |
| AGAATAGAACTTACACCCGG+GGG | 0.747089 | 4.1:-1850094 | None:intergenic |
| GAATAGAACTTACACCCGGG+GGG | 0.773466 | 4.1:-1850093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATGTTAAACAAAAAAA+TGG | - | chr4.1:1848788-1848807 | None:intergenic | 10.0% |
| !! | AATTATAAACTTCATCAAAA+TGG | + | chr4.1:1849413-1849432 | MS.gene020503:intron | 15.0% |
| !! | ACACTAATAAATATCTAAAT+TGG | + | chr4.1:1850901-1850920 | MS.gene020503:intron | 15.0% |
| !! | ATTATAAACTTCATCAAAAT+GGG | + | chr4.1:1849414-1849433 | MS.gene020503:intron | 15.0% |
| !! | AAAAAGTAGAAAGAGATAAT+AGG | - | chr4.1:1848247-1848266 | None:intergenic | 20.0% |
| !! | AATATTGATAAGAAAACTTC+AGG | - | chr4.1:1850556-1850575 | None:intergenic | 20.0% |
| !! | AGTAAGTAAGTAAGTAAAAA+TGG | - | chr4.1:1850841-1850860 | None:intergenic | 20.0% |
| !! | AGTTATTATTCTTAAGCAAA+AGG | - | chr4.1:1849521-1849540 | None:intergenic | 20.0% |
| !! | ATTTGGATCAAATCATAATA+AGG | + | chr4.1:1849727-1849746 | MS.gene020503:intron | 20.0% |
| !! | TAATAAATATCTAAATTGGC+AGG | + | chr4.1:1850905-1850924 | MS.gene020503:intron | 20.0% |
| !! | TATGTTAAACAAAAAAATGG+CGG | - | chr4.1:1848785-1848804 | None:intergenic | 20.0% |
| !! | TTTGGATCAAATCATAATAA+GGG | + | chr4.1:1849728-1849747 | MS.gene020503:intron | 20.0% |
| !!! | AAATTAAACATCATTTTGAC+TGG | + | chr4.1:1850650-1850669 | MS.gene020503:intron | 20.0% |
| !!! | CAATCTTTCAAAAAGTTTTT+CGG | - | chr4.1:1850144-1850163 | None:intergenic | 20.0% |
| !!! | GTTTTTTTGAAATTGATCAA+GGG | + | chr4.1:1848387-1848406 | MS.gene020503:intron | 20.0% |
| !!! | TATGGGTACTTTAAAATTTA+CGG | + | chr4.1:1848868-1848887 | MS.gene020503:intron | 20.0% |
| !!! | TTTTGAAGTGAATTTTCATA+TGG | + | chr4.1:1850433-1850452 | MS.gene020503:intron | 20.0% |
| ! | AAGAAAACTTCAGGAAAATA+AGG | - | chr4.1:1850547-1850566 | None:intergenic | 25.0% |
| ! | AATGAATTTGCATCAATATC+AGG | - | chr4.1:1848423-1848442 | None:intergenic | 25.0% |
| ! | AGAAAACTTCAGGAAAATAA+GGG | - | chr4.1:1850546-1850565 | None:intergenic | 25.0% |
| ! | ATGTTAAACAAAAAAATGGC+GGG | - | chr4.1:1848784-1848803 | None:intergenic | 25.0% |
| ! | ATTTCTGTAATAAACGTAAC+AGG | + | chr4.1:1848486-1848505 | MS.gene020503:intron | 25.0% |
| ! | CATATTTCTTAGTGCATTAA+AGG | - | chr4.1:1849265-1849284 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAGCAGAAAAT+TGG | - | chr4.1:1848271-1848290 | None:intergenic | 25.0% |
| ! | GAATATAGTAAATTCGTGTA+AGG | - | chr4.1:1849779-1849798 | None:intergenic | 25.0% |
| ! | GATGAAGTTTATAATTACTC+AGG | - | chr4.1:1849409-1849428 | None:intergenic | 25.0% |
| ! | GTGCTGAAATAGTTAATATT+TGG | + | chr4.1:1849710-1849729 | MS.gene020503:intron | 25.0% |
| ! | TAACCTATTGTAGAAACTTT+AGG | + | chr4.1:1848672-1848691 | MS.gene020503:intron | 25.0% |
| ! | TTATTTATGCTCACTGTAAT+TGG | + | chr4.1:1848571-1848590 | MS.gene020503:intron | 25.0% |
| ! | TTTCTGTAATAAACGTAACA+GGG | + | chr4.1:1848487-1848506 | MS.gene020503:intron | 25.0% |
| !! | GTGACAAATTTTTATTGATC+AGG | + | chr4.1:1849217-1849236 | MS.gene020503:intron | 25.0% |
| !! | TTTGGTTGTTGTTGTATATT+AGG | + | chr4.1:1851289-1851308 | MS.gene020503:intron | 25.0% |
| !!! | CGTTTTTTTGAAATTGATCA+AGG | + | chr4.1:1848386-1848405 | MS.gene020503:intron | 25.0% |
| !!! | TTGTATTTTGATCAGAATGA+GGG | + | chr4.1:1850311-1850330 | MS.gene020503:intron | 25.0% |
| !!! | TTTGTATTTTGATCAGAATG+AGG | + | chr4.1:1850310-1850329 | MS.gene020503:intron | 25.0% |
| !!! | TTTTCTGCTTTTTTTCTTCT+TGG | + | chr4.1:1848272-1848291 | MS.gene020503:intron | 25.0% |
| !!! | TTTTTTCATCTCATCTGTTT+TGG | + | chr4.1:1848332-1848351 | MS.gene020503:intron | 25.0% |
| ACAAATTGCAAATCTACAAG+TGG | - | chr4.1:1849900-1849919 | None:intergenic | 30.0% | |
| ACTAACTCGCTTAAAAAACA+AGG | + | chr4.1:1849619-1849638 | MS.gene020503:intron | 30.0% | |
| AGCAAAAGGATACTAAAAAG+AGG | - | chr4.1:1849507-1849526 | None:intergenic | 30.0% | |
| ATAAACTTCATCAAAATGGG+TGG | + | chr4.1:1849417-1849436 | MS.gene020503:intron | 30.0% | |
| ATGATATATTCATGCAGTCA+TGG | + | chr4.1:1850053-1850072 | MS.gene020503:CDS | 30.0% | |
| CCTAAACAGTTAAAAACCAA+GGG | - | chr4.1:1849111-1849130 | None:intergenic | 30.0% | |
| CTTAAAAAACAAGGCTAGAT+TGG | + | chr4.1:1849628-1849647 | MS.gene020503:intron | 30.0% | |
| CTTAACATGTTGAAGAACAA+GGG | - | chr4.1:1849079-1849098 | None:intergenic | 30.0% | |
| GGAAATGAAAATAGAAGTGA+AGG | - | chr4.1:1848226-1848245 | None:intergenic | 30.0% | |
| GTGAATTGTTGACCAAAATA+GGG | - | chr4.1:1850227-1850246 | None:intergenic | 30.0% | |
| TCCTAGGAATTTCAGATTAT+TGG | + | chr4.1:1849964-1849983 | MS.gene020503:CDS | 30.0% | |
| TCTCAAATCTTATTGCTTCA+GGG | + | chr4.1:1849341-1849360 | MS.gene020503:intron | 30.0% | |
| TCTTAACATGTTGAAGAACA+AGG | - | chr4.1:1849080-1849099 | None:intergenic | 30.0% | |
| TGTGAATTGTTGACCAAAAT+AGG | - | chr4.1:1850228-1850247 | None:intergenic | 30.0% | |
| TGTTAAACAAAAAAATGGCG+GGG | - | chr4.1:1848783-1848802 | None:intergenic | 30.0% | |
| TTCTTCTTATAGTGACTGTA+TGG | + | chr4.1:1851168-1851187 | MS.gene020503:intron | 30.0% | |
| TTGAGAGTGAAACTTTATGA+TGG | + | chr4.1:1851534-1851553 | MS.gene020503:CDS | 30.0% | |
| ! | AATTTTTATTGATCAGGAGC+AGG | + | chr4.1:1849223-1849242 | MS.gene020503:intron | 30.0% |
| ! | GAAATATGTTGTAACTTGCA+TGG | + | chr4.1:1849277-1849296 | MS.gene020503:intron | 30.0% |
| ! | TCCAATAATCTGAAATTCCT+AGG | - | chr4.1:1849968-1849987 | None:intergenic | 30.0% |
| ! | TTAAAGTACCCATACTTCAA+AGG | - | chr4.1:1848862-1848881 | None:intergenic | 30.0% |
| !! | CCTTGGTTTTTAACTGTTTA+GGG | + | chr4.1:1849109-1849128 | MS.gene020503:intron | 30.0% |
| !! | TATTAGGACCTTTGAAGTAT+GGG | + | chr4.1:1848851-1848870 | MS.gene020503:intron | 30.0% |
| !! | TTATTAGGACCTTTGAAGTA+TGG | + | chr4.1:1848850-1848869 | MS.gene020503:intron | 30.0% |
| !!! | AACTGTTTAGGGCTTTTTTT+TGG | + | chr4.1:1849120-1849139 | MS.gene020503:intron | 30.0% |
| !!! | CATAAGTTCTGTGTTTTTTC+TGG | + | chr4.1:1851134-1851153 | MS.gene020503:intron | 30.0% |
| !!! | CTTTTTAGCTTCTTCAAAAG+TGG | + | chr4.1:1850405-1850424 | MS.gene020503:intron | 30.0% |
| !!! | TCTCTATTTTTGCCCTATTT+TGG | + | chr4.1:1850212-1850231 | MS.gene020503:intron | 30.0% |
| !!! | TGTATTTTGATCAGAATGAG+GGG | + | chr4.1:1850312-1850331 | MS.gene020503:intron | 30.0% |
| AAAGAATAGAACTTACACCC+GGG | - | chr4.1:1850099-1850118 | None:intergenic | 35.0% | |
| AACAGGATTCCAGAAGTTAT+TGG | - | chr4.1:1849675-1849694 | None:intergenic | 35.0% | |
| AATAAGAATGACACACCTTC+AGG | - | chr4.1:1851050-1851069 | None:intergenic | 35.0% | |
| AATTACTCAGGTTACCAATG+AGG | - | chr4.1:1849397-1849416 | None:intergenic | 35.0% | |
| ACAAGCTCATCCATTTATCT+GGG | + | chr4.1:1848821-1848840 | MS.gene020503:intron | 35.0% | |
| ACATTTGTAATCTCCAGAGT+AGG | - | chr4.1:1851406-1851425 | None:intergenic | 35.0% | |
| AGAAGTTATTGGTCCAATTC+AGG | - | chr4.1:1849664-1849683 | None:intergenic | 35.0% | |
| AGTTCCTGAGAGTTCTTTAT+GGG | + | chr4.1:1849473-1849492 | MS.gene020503:intron | 35.0% | |
| CAAAGAATAGAACTTACACC+CGG | - | chr4.1:1850100-1850119 | None:intergenic | 35.0% | |
| CATCTGTTAGATTTCAGACA+AGG | + | chr4.1:1850772-1850791 | MS.gene020503:CDS | 35.0% | |
| CATGTTAGCTACAAATGACA+AGG | - | chr4.1:1850461-1850480 | None:intergenic | 35.0% | |
| CATTAATTGTCAACCTACTC+TGG | + | chr4.1:1851390-1851409 | MS.gene020503:intron | 35.0% | |
| CCCTAAACAGTTAAAAACCA+AGG | - | chr4.1:1849112-1849131 | None:intergenic | 35.0% | |
| CTCAAATCTTATTGCTTCAG+GGG | + | chr4.1:1849342-1849361 | MS.gene020503:intron | 35.0% | |
| CTGCCTAAAGTTTCTACAAT+AGG | - | chr4.1:1848678-1848697 | None:intergenic | 35.0% | |
| CTTTAGTCAATCAACAATCG+CGG | + | chr4.1:1848899-1848918 | MS.gene020503:intron | 35.0% | |
| GTCTCAAATCTTATTGCTTC+AGG | + | chr4.1:1849340-1849359 | MS.gene020503:intron | 35.0% | |
| GTGATCTAAATCATGAAAGC+TGG | + | chr4.1:1849593-1849612 | MS.gene020503:intron | 35.0% | |
| GTTGTATATTAGGTAACCAC+TGG | + | chr4.1:1851299-1851318 | MS.gene020503:intron | 35.0% | |
| TACAAGCTCATCCATTTATC+TGG | + | chr4.1:1848820-1848839 | MS.gene020503:intron | 35.0% | |
| TAGTTCCTGAGAGTTCTTTA+TGG | + | chr4.1:1849472-1849491 | MS.gene020503:intron | 35.0% | |
| TCACTTAGTGGGATATAGTT+TGG | + | chr4.1:1851271-1851290 | MS.gene020503:intron | 35.0% | |
| TGAATTGGACCAATAACTTC+TGG | + | chr4.1:1849663-1849682 | MS.gene020503:intron | 35.0% | |
| TGTGAAATTACTGCATCAGT+TGG | + | chr4.1:1851354-1851373 | MS.gene020503:intron | 35.0% | |
| TGTTAAGACAAAAATGCCCT+TGG | + | chr4.1:1849092-1849111 | MS.gene020503:intron | 35.0% | |
| TTATATCAGACTGTTCACGA+AGG | + | chr4.1:1850696-1850715 | MS.gene020503:intron | 35.0% | |
| TTCATCACTGTCCAAATTTG+TGG | + | chr4.1:1851227-1851246 | MS.gene020503:intron | 35.0% | |
| TTGAGAGTGATACTTTCTGA+TGG | - | chr4.1:1851456-1851475 | None:intergenic | 35.0% | |
| TTGGAAAAGAGAGTCTACAA+TGG | + | chr4.1:1850959-1850978 | MS.gene020503:CDS | 35.0% | |
| ! | ATATCCAGCATAAGTTGACA+AGG | - | chr4.1:1850255-1850274 | None:intergenic | 35.0% |
| ! | CTTGTCTGAAATCTAACAGA+TGG | - | chr4.1:1850774-1850793 | None:intergenic | 35.0% |
| ! | CTTTGGAAACTAAGTGGTTA+TGG | + | chr4.1:1850367-1850386 | MS.gene020503:intron | 35.0% |
| ! | GAAAATAGAAGTGAAGGTGT+TGG | - | chr4.1:1848220-1848239 | None:intergenic | 35.0% |
| ! | GTTTTCTTTTGGATCCTCAT+TGG | + | chr4.1:1849380-1849399 | MS.gene020503:intron | 35.0% |
| ! | TAACCACTGGTTGTCTAATA+TGG | + | chr4.1:1851312-1851331 | MS.gene020503:intron | 35.0% |
| ! | TTGGGTTTGATGTTTTGCTT+TGG | + | chr4.1:1850350-1850369 | MS.gene020503:intron | 35.0% |
| !! | AATAACTTCTGGAATCCTGT+TGG | + | chr4.1:1849674-1849693 | MS.gene020503:intron | 35.0% |
| !! | ATAACTTCTGGAATCCTGTT+GGG | + | chr4.1:1849675-1849694 | MS.gene020503:intron | 35.0% |
| !! | ATTCTGTGCATGGCTTTAAT+TGG | - | chr4.1:1850587-1850606 | None:intergenic | 35.0% |
| !! | CCCTTGGTTTTTAACTGTTT+AGG | + | chr4.1:1849108-1849127 | MS.gene020503:intron | 35.0% |
| !! | TACCAGTTGAAGTTGTTTTG+TGG | + | chr4.1:1850726-1850745 | MS.gene020503:CDS | 35.0% |
| !! | TTCTGTGCATGGCTTTAATT+GGG | - | chr4.1:1850586-1850605 | None:intergenic | 35.0% |
| !!! | GTTTTGCTTTGGAAACTAAG+TGG | + | chr4.1:1850361-1850380 | MS.gene020503:intron | 35.0% |
| !!! | TCGAACAGCTTTTAACTTCT+CGG | + | chr4.1:1851505-1851524 | MS.gene020503:CDS | 35.0% |
| !!! | TCTGCTTTTTTTCTTCTTGG+TGG | + | chr4.1:1848275-1848294 | MS.gene020503:intron | 35.0% |
| !!! | TTGTTGGAAGCGTTTTCTTT+TGG | + | chr4.1:1849369-1849388 | MS.gene020503:intron | 35.0% |
| AAATGATGTCCCCACAAAAC+CGG | + | chr4.1:1851009-1851028 | MS.gene020503:CDS | 40.0% | |
| AAGAATAGAACTTACACCCG+GGG | - | chr4.1:1850098-1850117 | None:intergenic | 40.0% | |
| AATTCCTAAAGCAGTGTAGC+GGG | - | chr4.1:1849197-1849216 | None:intergenic | 40.0% | |
| ACACCATATTAGACAACCAG+TGG | - | chr4.1:1851318-1851337 | None:intergenic | 40.0% | |
| ACATAGTAGACGAGCAGAAA+AGG | + | chr4.1:1849045-1849064 | MS.gene020503:intron | 40.0% | |
| ACTTGGCAACTCACAAGTAT+TGG | + | chr4.1:1849556-1849575 | MS.gene020503:intron | 40.0% | |
| AGGGCAAAAATAGAGAACTG+TGG | - | chr4.1:1850208-1850227 | None:intergenic | 40.0% | |
| ATAACCACAGCCCAGATAAA+TGG | - | chr4.1:1848834-1848853 | None:intergenic | 40.0% | |
| ATATCCCACTAAGTGAAGTG+AGG | - | chr4.1:1851267-1851286 | None:intergenic | 40.0% | |
| ATATTCATGCAGTCATGGAC+TGG | + | chr4.1:1850058-1850077 | MS.gene020503:CDS | 40.0% | |
| CAATTCCTAAAGCAGTGTAG+CGG | - | chr4.1:1849198-1849217 | None:intergenic | 40.0% | |
| CTACAATAGGTTAACTGAGC+AGG | - | chr4.1:1848665-1848684 | None:intergenic | 40.0% | |
| CTGGTTGTCTAATATGGTGT+TGG | + | chr4.1:1851318-1851337 | MS.gene020503:intron | 40.0% | |
| CTTCAGGAAAATAAGGGTCT+AGG | - | chr4.1:1850540-1850559 | None:intergenic | 40.0% | |
| CTTCTGTTGTGTACCAAACT+TGG | + | chr4.1:1849539-1849558 | MS.gene020503:intron | 40.0% | |
| GCAAGCATGGGAAACAAATT+TGG | - | chr4.1:1850936-1850955 | None:intergenic | 40.0% | |
| GGTTGAGCAAATCTATGTTG+CGG | + | chr4.1:1848973-1848992 | MS.gene020503:intron | 40.0% | |
| GTTCCTGAGAGTTCTTTATG+GGG | + | chr4.1:1849474-1849493 | MS.gene020503:intron | 40.0% | |
| TAACTACCACTCCAGATTCT+TGG | - | chr4.1:1850818-1850837 | None:intergenic | 40.0% | |
| TACTTGTGAGTTGCCAAGTT+TGG | - | chr4.1:1849555-1849574 | None:intergenic | 40.0% | |
| TATTCATGCAGTCATGGACT+GGG | + | chr4.1:1850059-1850078 | MS.gene020503:CDS | 40.0% | |
| TCATCCTTGTCAACTTATGC+TGG | + | chr4.1:1850248-1850267 | MS.gene020503:intron | 40.0% | |
| TCCATTGTAGCAGTTGCTAT+AGG | + | chr4.1:1851111-1851130 | MS.gene020503:intron | 40.0% | |
| TGCCACAAAACAACTTCAAC+TGG | - | chr4.1:1850731-1850750 | None:intergenic | 40.0% | |
| TGGTTACTCTTGACCTGAAT+TGG | + | chr4.1:1849648-1849667 | MS.gene020503:intron | 40.0% | |
| TGTAAGGAAATGCACACTCT+TGG | - | chr4.1:1849763-1849782 | None:intergenic | 40.0% | |
| TGTCTATCAATGCAGTTCCT+AGG | + | chr4.1:1849948-1849967 | MS.gene020503:intron | 40.0% | |
| TGTTGGAGAATTACCAACGA+CGG | - | chr4.1:1848203-1848222 | None:intergenic | 40.0% | |
| TTATCTGGGCTGTGGTTATT+AGG | + | chr4.1:1848835-1848854 | MS.gene020503:intron | 40.0% | |
| TTCCTGAGAGTTCTTTATGG+GGG | + | chr4.1:1849475-1849494 | MS.gene020503:intron | 40.0% | |
| TTGCTTCAGGGGTTATTTGT+TGG | + | chr4.1:1849353-1849372 | MS.gene020503:intron | 40.0% | |
| ! | AGGAGCAGGAAATTTTAGAC+GGG | + | chr4.1:1849237-1849256 | MS.gene020503:intron | 40.0% |
| ! | ATTTGAGACACCAGATTCTC+AGG | - | chr4.1:1849329-1849348 | None:intergenic | 40.0% |
| ! | CAGGAGCAGGAAATTTTAGA+CGG | + | chr4.1:1849236-1849255 | MS.gene020503:intron | 40.0% |
| ! | CTTTTCCAACTAGCAAGCAT+GGG | - | chr4.1:1850948-1850967 | None:intergenic | 40.0% |
| ! | GTCTGAAATCTAACAGATGG+TGG | - | chr4.1:1850771-1850790 | None:intergenic | 40.0% |
| ! | TCTTTTCCAACTAGCAAGCA+TGG | - | chr4.1:1850949-1850968 | None:intergenic | 40.0% |
| ! | TGTGCTGATCTCTAGTTGTT+AGG | + | chr4.1:1850610-1850629 | MS.gene020503:intron | 40.0% |
| ! | TTTGAGACACCAGATTCTCA+GGG | - | chr4.1:1849328-1849347 | None:intergenic | 40.0% |
| !! | GTTGAAGTTGTTTTGTGGCA+AGG | + | chr4.1:1850731-1850750 | MS.gene020503:CDS | 40.0% |
| !! | TAACTTCTGGAATCCTGTTG+GGG | + | chr4.1:1849676-1849695 | MS.gene020503:intron | 40.0% |
| !! | TCATGGACTGGGACTATTAT+TGG | + | chr4.1:1850070-1850089 | MS.gene020503:CDS | 40.0% |
| !! | TCTGTGCATGGCTTTAATTG+GGG | - | chr4.1:1850585-1850604 | None:intergenic | 40.0% |
| AAGAATGACACACCTTCAGG+AGG | - | chr4.1:1851047-1851066 | None:intergenic | 45.0% | |
| ACCAAAGTTATAGCCCCAAC+AGG | - | chr4.1:1849692-1849711 | None:intergenic | 45.0% | |
| ACCAACCTCACTTCACTTAG+TGG | + | chr4.1:1851259-1851278 | MS.gene020503:intron | 45.0% | |
| ACTTGCGTCAACCAAGAATC+TGG | + | chr4.1:1850804-1850823 | MS.gene020503:CDS | 45.0% | |
| AGAATAGAACTTACACCCGG+GGG | - | chr4.1:1850097-1850116 | None:intergenic | 45.0% | |
| AGGAAATGCACACTCTTGGA+CGG | - | chr4.1:1849759-1849778 | None:intergenic | 45.0% | |
| AGTTAAGGAGCGGAGTGATA+AGG | - | chr4.1:1848736-1848755 | None:intergenic | 45.0% | |
| ATGTAAAACAACGTGGTGGC+TGG | + | chr4.1:1848952-1848971 | MS.gene020503:intron | 45.0% | |
| CAGCACATGAATTCTGTGCA+TGG | - | chr4.1:1850597-1850616 | None:intergenic | 45.0% | |
| CAGCGCTATGTAAAACAACG+TGG | + | chr4.1:1848945-1848964 | MS.gene020503:intron | 45.0% | |
| CCAACCTCACTTCACTTAGT+GGG | + | chr4.1:1851260-1851279 | MS.gene020503:intron | 45.0% | |
| CGCTATGTAAAACAACGTGG+TGG | + | chr4.1:1848948-1848967 | MS.gene020503:intron | 45.0% | |
| CTGTCCAAATTTGTGGACAG+TGG | + | chr4.1:1851234-1851253 | MS.gene020503:intron | 45.0% | |
| GAGACGGAACTGTTAGCTAT+GGG | + | chr4.1:1850017-1850036 | MS.gene020503:CDS | 45.0% | |
| GATATAACGTTGGTCAGGGT+GGG | - | chr4.1:1848761-1848780 | None:intergenic | 45.0% | |
| GCCTATAGCAACTGCTACAA+TGG | - | chr4.1:1851115-1851134 | None:intergenic | 45.0% | |
| GTGGTTGCTTGCTTGTGTAT+AGG | + | chr4.1:1848294-1848313 | MS.gene020503:intron | 45.0% | |
| GTGTCCACTGTCCACAAATT+TGG | - | chr4.1:1851241-1851260 | None:intergenic | 45.0% | |
| GTTAAGGAGCGGAGTGATAA+GGG | - | chr4.1:1848735-1848754 | None:intergenic | 45.0% | |
| TAGTCAATCAACAATCGCGG+TGG | + | chr4.1:1848902-1848921 | MS.gene020503:intron | 45.0% | |
| TCATCCATTTATCTGGGCTG+TGG | + | chr4.1:1848827-1848846 | MS.gene020503:intron | 45.0% | |
| TCCTGTTGGGGCTATAACTT+TGG | + | chr4.1:1849688-1849707 | MS.gene020503:intron | 45.0% | |
| TTAAGGAGCGGAGTGATAAG+GGG | - | chr4.1:1848734-1848753 | None:intergenic | 45.0% | |
| TTATTGGAAGAGCTTGAGCG+AGG | + | chr4.1:1849980-1849999 | MS.gene020503:CDS | 45.0% | |
| ! | AAATGGCGGGGATATAACGT+TGG | - | chr4.1:1848771-1848790 | None:intergenic | 45.0% |
| ! | GGAGCAGGAAATTTTAGACG+GGG | + | chr4.1:1849238-1849257 | MS.gene020503:intron | 45.0% |
| ! | GTTGTAACTTGCATGGTGTG+TGG | + | chr4.1:1849284-1849303 | MS.gene020503:intron | 45.0% |
| ! | TAACTTGCATGGTGTGTGGA+GGG | + | chr4.1:1849288-1849307 | MS.gene020503:intron | 45.0% |
| ! | TGAGATAGCTTCCGGTTTTG+TGG | - | chr4.1:1851023-1851042 | None:intergenic | 45.0% |
| ! | TGTTTCCCATGCTTGCTAGT+TGG | + | chr4.1:1850940-1850959 | MS.gene020503:CDS | 45.0% |
| !! | AGATAGCTTCCGGTTTTGTG+GGG | - | chr4.1:1851021-1851040 | None:intergenic | 45.0% |
| !! | CACGTTGTTTTACATAGCGC+TGG | - | chr4.1:1848947-1848966 | None:intergenic | 45.0% |
| !! | CTAACAGATGGTGGATTGTC+TGG | - | chr4.1:1850762-1850781 | None:intergenic | 45.0% |
| !! | GAGATAGCTTCCGGTTTTGT+GGG | - | chr4.1:1851022-1851041 | None:intergenic | 45.0% |
| AACTTGCATGGTGTGTGGAG+GGG | + | chr4.1:1849289-1849308 | MS.gene020503:intron | 50.0% | |
| AAGCTATCTCAGCCTCCTGA+AGG | + | chr4.1:1851032-1851051 | MS.gene020503:CDS | 50.0% | |
| CCCACTAAGTGAAGTGAGGT+TGG | - | chr4.1:1851263-1851282 | None:intergenic | 50.0% | |
| CGGAACTGTTAGCTATGGGA+TGG | + | chr4.1:1850021-1850040 | MS.gene020503:CDS | 50.0% | |
| CGGGGATATAACGTTGGTCA+GGG | - | chr4.1:1848765-1848784 | None:intergenic | 50.0% | |
| CGGTGGTACTTGATGTAGTG+GGG | + | chr4.1:1848919-1848938 | MS.gene020503:intron | 50.0% | |
| CGTCAACCAAGAATCTGGAG+TGG | + | chr4.1:1850809-1850828 | MS.gene020503:CDS | 50.0% | |
| GAATAGAACTTACACCCGGG+GGG | - | chr4.1:1850096-1850115 | None:intergenic | 50.0% | |
| GAGTGATAAGGGGTGATCTC+GGG | - | chr4.1:1848724-1848743 | None:intergenic | 50.0% | |
| GCGGTGGTACTTGATGTAGT+GGG | + | chr4.1:1848918-1848937 | MS.gene020503:intron | 50.0% | |
| GGAGAAAGTCGCAATGCAGT+GGG | - | chr4.1:1849176-1849195 | None:intergenic | 50.0% | |
| GGAGACGGAACTGTTAGCTA+TGG | + | chr4.1:1850016-1850035 | MS.gene020503:CDS | 50.0% | |
| GGAGTGATAAGGGGTGATCT+CGG | - | chr4.1:1848725-1848744 | None:intergenic | 50.0% | |
| GGATATAACGTTGGTCAGGG+TGG | - | chr4.1:1848762-1848781 | None:intergenic | 50.0% | |
| GGTGAGAAGGGAATTGGAGA+CGG | + | chr4.1:1850001-1850020 | MS.gene020503:CDS | 50.0% | |
| TGCCCCCATAAAGAACTCTC+AGG | - | chr4.1:1849480-1849499 | None:intergenic | 50.0% | |
| TGGAGAATTACCAACGACGG+TGG | - | chr4.1:1848200-1848219 | None:intergenic | 50.0% | |
| TGGGTGGCATGTCATTCTTG+AGG | + | chr4.1:1849433-1849452 | MS.gene020503:intron | 50.0% | |
| TTAGGCAGCATGCTCTTGTG+TGG | + | chr4.1:1848690-1848709 | MS.gene020503:intron | 50.0% | |
| TTCTCCCGCTACACTGCTTT+AGG | + | chr4.1:1849190-1849209 | MS.gene020503:intron | 50.0% | |
| TTGGACCTTCTGTGTGACTC+CGG | + | chr4.1:1849139-1849158 | MS.gene020503:intron | 50.0% | |
| ! | GTAACTTGCATGGTGTGTGG+AGG | + | chr4.1:1849287-1849306 | MS.gene020503:intron | 50.0% |
| ACTTGCATGGTGTGTGGAGG+GGG | + | chr4.1:1849290-1849309 | MS.gene020503:intron | 55.0% | |
| AGAGCTTGAGCGAGGTGAGA+AGG | + | chr4.1:1849988-1850007 | MS.gene020503:CDS | 55.0% | |
| AGGGTGGGAGAGTTAAGGAG+CGG | - | chr4.1:1848746-1848765 | None:intergenic | 55.0% | |
| ATTCGGCCACCCTGAGAATC+TGG | + | chr4.1:1849316-1849335 | MS.gene020503:intron | 55.0% | |
| CAGGAGGCTGAGATAGCTTC+CGG | - | chr4.1:1851031-1851050 | None:intergenic | 55.0% | |
| CGCGGTGGTACTTGATGTAG+TGG | + | chr4.1:1848917-1848936 | MS.gene020503:intron | 55.0% | |
| GAGACACCAGATTCTCAGGG+TGG | - | chr4.1:1849325-1849344 | None:intergenic | 55.0% | |
| GAGCGAGGTGAGAAGGGAAT+TGG | + | chr4.1:1849995-1850014 | MS.gene020503:CDS | 55.0% | |
| GAGCTTGAGCGAGGTGAGAA+GGG | + | chr4.1:1849989-1850008 | MS.gene020503:CDS | 55.0% | |
| GCGGGGATATAACGTTGGTC+AGG | - | chr4.1:1848766-1848785 | None:intergenic | 55.0% | |
| GGGAGAAAGTCGCAATGCAG+TGG | - | chr4.1:1849177-1849196 | None:intergenic | 55.0% | |
| GGGTGTGCGCTGTGTGTATT+GGG | + | chr4.1:1850332-1850351 | MS.gene020503:intron | 55.0% | |
| TCTGAAGGATCCACCGTCGT+TGG | + | chr4.1:1848187-1848206 | MS.gene020503:CDS | 55.0% | |
| TGGGACTATTATTGGCCCCC+CGG | + | chr4.1:1850078-1850097 | MS.gene020503:CDS | 55.0% | |
| TGGTCAGGGTGGGAGAGTTA+AGG | - | chr4.1:1848751-1848770 | None:intergenic | 55.0% | |
| ! | GTGTGTGGAGGGGGTTGATT+CGG | + | chr4.1:1849299-1849318 | MS.gene020503:intron | 55.0% |
| GCTTGCCGGAGTCACACAGA+AGG | - | chr4.1:1849147-1849166 | None:intergenic | 60.0% | |
| GGGACTATTATTGGCCCCCC+GGG | + | chr4.1:1850079-1850098 | MS.gene020503:CDS | 60.0% | |
| GGGGTGTGCGCTGTGTGTAT+TGG | + | chr4.1:1850331-1850350 | MS.gene020503:intron | 60.0% | |
| GTCGCAATGCAGTGGGTACC+AGG | - | chr4.1:1849169-1849188 | None:intergenic | 60.0% | |
| CGCCGCCACACACAGTGCTA+CGG | - | chr4.1:1848999-1849018 | None:intergenic | 65.0% | |
| CTGTGTGACTCCGGCAAGCC+TGG | + | chr4.1:1849148-1849167 | MS.gene020503:intron | 65.0% | |
| GCAGTGGGTACCAGGCTTGC+CGG | - | chr4.1:1849161-1849180 | None:intergenic | 65.0% | |
| GGCCGTAGCACTGTGTGTGG+CGG | + | chr4.1:1848994-1849013 | MS.gene020503:intron | 65.0% | |
| TGCGGCCGTAGCACTGTGTG+TGG | + | chr4.1:1848991-1849010 | MS.gene020503:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 1848181 | 1851581 | 1848181 | ID=MS.gene020503 |
| chr4.1 | mRNA | 1848181 | 1851581 | 1848181 | ID=MS.gene020503.t1;Parent=MS.gene020503 |
| chr4.1 | exon | 1848181 | 1848208 | 1848181 | ID=MS.gene020503.t1.exon1;Parent=MS.gene020503.t1 |
| chr4.1 | CDS | 1848181 | 1848208 | 1848181 | ID=cds.MS.gene020503.t1;Parent=MS.gene020503.t1 |
| chr4.1 | exon | 1849963 | 1850102 | 1849963 | ID=MS.gene020503.t1.exon2;Parent=MS.gene020503.t1 |
| chr4.1 | CDS | 1849963 | 1850102 | 1849963 | ID=cds.MS.gene020503.t1;Parent=MS.gene020503.t1 |
| chr4.1 | exon | 1850705 | 1850830 | 1850705 | ID=MS.gene020503.t1.exon3;Parent=MS.gene020503.t1 |
| chr4.1 | CDS | 1850705 | 1850830 | 1850705 | ID=cds.MS.gene020503.t1;Parent=MS.gene020503.t1 |
| chr4.1 | exon | 1850927 | 1851053 | 1850927 | ID=MS.gene020503.t1.exon4;Parent=MS.gene020503.t1 |
| chr4.1 | CDS | 1850927 | 1851053 | 1850927 | ID=cds.MS.gene020503.t1;Parent=MS.gene020503.t1 |
| chr4.1 | exon | 1851436 | 1851581 | 1851436 | ID=MS.gene020503.t1.exon5;Parent=MS.gene020503.t1 |
| chr4.1 | CDS | 1851436 | 1851581 | 1851436 | ID=cds.MS.gene020503.t1;Parent=MS.gene020503.t1 |
| Gene Sequence |
| Protein sequence |
