AlfalfaGEDB | MS.gene73357

M. sativa cultivar XinJiangDaYe / MS.gene73357

KEGG: -
GO: -
PFAM: PF04819.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73357.t1	XP_003624534.1	96.3	301	11	0	1	301	1	301	1.20E-106	396.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73357.t1	Q2HRW3	96.3	301	11	0	1	301	1	301	8.8e-107	396.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050170	MS.gene73357	-0.822986	1.77E-53	-1.69E-46
MS.gene050496	MS.gene73357	-0.828108	1.08E-54	-1.69E-46
MS.gene05589	MS.gene73357	-0.806443	8.21E-50	-1.69E-46
MS.gene056387	MS.gene73357	-0.809823	1.56E-50	-1.69E-46
MS.gene056504	MS.gene73357	-0.806585	7.66E-50	-1.69E-46
MS.gene06000	MS.gene73357	-0.81671	4.80E-52	-1.69E-46
MS.gene060778	MS.gene73357	-0.80312	4.06E-49	-1.69E-46
MS.gene060982	MS.gene73357	-0.821233	4.50E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73357.t1	MTR_7g084610	97.342	301	8	0	1	301	1	301	0.0	577
MS.gene73357.t1	MTR_8g071150	23.488	281	196	5	1	277	1	266	1.69e-16	78.2
MS.gene73357.t1	MTR_5g027180	23.273	275	182	8	1	263	1	258	6.05e-15	73.9
MS.gene73357.t1	MTR_1g045060	30.882	136	83	5	166	293	158	290	3.90e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73357.t1	AT5G13890	52.381	315	131	4	1	301	1	310	2.23e-88	266
MS.gene73357.t1	AT5G13890	52.381	315	131	4	1	301	1	310	2.23e-88	266
MS.gene73357.t1	AT5G13890	52.381	315	131	4	1	301	1	310	2.23e-88	266

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Find 110 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGAAGTGAGACGGTGGA+CGG	0.580404	7.2:+23040570	None:intergenic
AAGAGAATTCATGAGGGAGA+CGG	0.591190	7.2:+23040488	None:intergenic
AATAGGGCGGAGACGAGGGT+GGG	0.591777	7.2:+23040687	None:intergenic
AATTCATGAGGGAGACGGAG+GGG	0.559652	7.2:+23040493	None:intergenic
ACCTAATAGAATCAGTGATG+AGG	0.626897	7.2:+23040798	None:intergenic
ACGTCTGCGGGGAAAAGACG+AGG	0.656285	7.2:+23040313	None:intergenic
ACTGCTTGATGTTGTTAATG+GGG	0.617787	7.2:-23040194	MS.gene73357:CDS
AGAAGTGAGACGGTGGACGG+GGG	0.609667	7.2:+23040573	None:intergenic
AGAATTCATGAGGGAGACGG+AGG	0.563646	7.2:+23040491	None:intergenic
AGACGAGGGTGGGAGGTGGT+GGG	0.463472	7.2:+23040697	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGATGAAGTAGAGTTGAAT+AGG	+	chr7.2:23040108-23040127	None:intergenic	30.0%
TCATATTCAGATGAAAGCTT+TGG	-	chr7.2:23040812-23040831	MS.gene73357:CDS	30.0%
TGAATATGATTAGAATCCGT+AGG	+	chr7.2:23040801-23040820	None:intergenic	30.0%
TGATGAAGTAGAGTTGAATA+GGG	+	chr7.2:23040107-23040126	None:intergenic	30.0%
ACCTAATAGAATCAGTGATG+AGG	+	chr7.2:23039980-23039999	None:intergenic	35.0%
ACTGCTTGATGTTGTTAATG+GGG	-	chr7.2:23040581-23040600	MS.gene73357:CDS	35.0%
AGACTGCTTGATGTTGTTAA+TGG	-	chr7.2:23040579-23040598	MS.gene73357:CDS	35.0%
AGAGAGAAAGAGAATTCATG+AGG	+	chr7.2:23040297-23040316	None:intergenic	35.0%
AGCTGAGAGATTTGATGAAA+CGG	+	chr7.2:23040406-23040425	None:intergenic	35.0%
GACTGCTTGATGTTGTTAAT+GGG	-	chr7.2:23040580-23040599	MS.gene73357:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	23039946	23040851	23039946	ID=MS.gene73357
chr7.2	mRNA	23039946	23040851	23039946	ID=MS.gene73357.t1;Parent=MS.gene73357
chr7.2	exon	23039946	23040851	23039946	ID=MS.gene73357.t1.exon1;Parent=MS.gene73357.t1
chr7.2	CDS	23039946	23040851	23039946	ID=cds.MS.gene73357.t1;Parent=MS.gene73357.t1

Gene Sequence

>MS.gene73357

ATGGGTAGTTTATTATACCAAGCACTAACATCCTCATCACTGATTCTATTAGGTCTTTACCACCTAATCTTCACAACCCTAAACTACCTCAAATCCCCACACACCTACACATCCAAACCCTACCACCCACTCCCCACCACCTCCCACCCTCGTCTCCGCCCTATTCAACTCTACTTCATCATCTTCTCCCTCTCCATCGCCATCCTCCACCACCTCATCCTCGCCACCGACTCCGATCCCTTAATCAAAGGCTCCACCCCCGTCCACCGTCTCACTTCTCTTCAATCCGCCTCCCTTCTCTTCCTCTTCCTCCTCCTCTCCCTCTCTCTCCTCCTCCCCCTCCGTCTCCCTCATGAATTCTCTTTCTCTCTCCTCTCTCTTCTCTTCCTTCTCCACTCCTCTCTTCAAACCAATCTCTCATCTCTTCAAACATCCTCCCTTGAAGCCAAATGTGACTCCGTTTCATCAAATCTCTCAGCTCTTGCTTCTTTTATGTGTTTGCTTCTTACACTCTTTCCTCGTCTTTTCCCCGCAGACGTGGGACTCGCTGGGTCCCTTTGTCTGCGGGGATTATGGGCTCTGCAGACCGGCTTAACGCTTTATGCAGAGCCTTTTATTCCTGAGGGGTGTCATAGACTGCTTGATGTTGTTAATGGGGTTGAAGGTTCAACGAAATGTGATCTTGATGAGTCGAAGTTTAGAGCGCTTGCTATTCTTGATCTTGCTTTTGTGGTTCATGTTATGTTGGTTATGATTGTTGTGTTGGTTGTTTATGCTGTTGTTGCGTCTGCGGTTGGTGGTGTTAGAAGAGTGGGATCTTATGAGGCTTTGCCTACTACTGGTTCTTCTTCGCCTACGGATTCTAATCATATTCAGATGAAAGCTTTGGCTGGCACACAGGCTTGA

Protein sequence

>MS.gene73357.t1

MGSLLYQALTSSSLILLGLYHLIFTTLNYLKSPHTYTSKPYHPLPTTSHPRLRPIQLYFIIFSLSIAILHHLILATDSDPLIKGSTPVHRLTSLQSASLLFLFLLLSLSLLLPLRLPHEFSFSLLSLLFLLHSSLQTNLSSLQTSSLEAKCDSVSSNLSALASFMCLLLTLFPRLFPADVGLAGSLCLRGLWALQTGLTLYAEPFIPEGCHRLLDVVNGVEGSTKCDLDESKFRALAILDLAFVVHVMLVMIVVLVVYAVVASAVGGVRRVGSYEALPTTGSSSPTDSNHIQMKALAGTQA