AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73382

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73382.t1 MTR_7g084150 98.361 244 4 0 2 245 30 273 0.0 498
MS.gene73382.t1 MTR_3g082230 79.688 64 13 0 126 189 68 131 6.92e-28 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73382.t1 AT5G13430 84.259 216 34 0 30 245 57 272 2.76e-139 392
MS.gene73382.t1 AT5G13440 83.796 216 35 0 30 245 59 274 4.02e-139 391

Find 79 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCTCATTATGATATTTC+TGG 0.147844 7.2:-23365273 MS.gene73382:CDS
GAAACAGTTGCAGGAATTTC+AGG 0.237158 7.2:+23365762 None:intergenic
ATGATATTTCTGGCAGAATT+AGG 0.242646 7.2:-23365263 MS.gene73382:CDS
CCGATCACAACGAGCCATTC+TGG 0.268480 7.2:+23365369 None:intergenic
GGTACCAACTTATTCATTCT+TGG 0.306788 7.2:-23365214 MS.gene73382:CDS
AACAGATGACGATGTGAAAT+TGG 0.317786 7.2:-23365454 MS.gene73382:CDS
GATCGGTGTTTGCACACATC+TGG 0.323690 7.2:-23365352 MS.gene73382:CDS
TTCGCATACTTTGTCCTAAC+AGG 0.331271 7.2:-23365654 MS.gene73382:CDS
CTGAAGGGGAGAAAGAATTC+AGG 0.347551 7.2:+23367568 None:intergenic
GGGACCTGCACCATACAATT+TGG 0.359660 7.2:-23365238 MS.gene73382:CDS
GTGGAAGAAGGCGGTGGGAT+GGG 0.378797 7.2:+23367628 None:intergenic
TGCATTCCCTTGCCAAATGC+TGG 0.381560 7.2:-23365327 MS.gene73382:CDS
CCGCCAAAGTCTCCAGCATT+TGG 0.391956 7.2:+23365315 None:intergenic
TCATATACAATCTTTGAAGA+TGG 0.405797 7.2:+23365726 None:intergenic
TTAACAGCAGAAACAGTTGC+AGG 0.410008 7.2:+23365753 None:intergenic
TTGCCAAATGCTGGAGACTT+TGG 0.416842 7.2:-23365318 MS.gene73382:CDS
GCCCTCTTGCTTGGATCACC+AGG 0.425512 7.2:+23365678 None:intergenic
GAATTCAGGGTGGATGGAAA+AGG 0.437093 7.2:+23367582 None:intergenic
TATGCGAATGCCCTCTTGCT+TGG 0.442545 7.2:+23365669 None:intergenic
TGGAAGAAGGCGGTGGGATG+GGG 0.452135 7.2:+23367629 None:intergenic
AAACAAACCTTCCACCTGTT+AGG 0.452175 7.2:+23365640 None:intergenic
CCAAATGCTGGAGACTTTGG+CGG 0.457248 7.2:-23365315 MS.gene73382:CDS
GTGGAAAGCCAGTATTCATC+AGG 0.460050 7.2:-23365482 MS.gene73382:CDS
CGATCACAACGAGCCATTCT+GGG 0.462447 7.2:+23365370 None:intergenic
GCTCAGCATGTCCGCAAGTA+AGG 0.463109 7.2:-23365580 MS.gene73382:CDS
AATTCAGGGTGGATGGAAAA+GGG 0.475500 7.2:+23367583 None:intergenic
AGATCTGCGTTGATCGGAAG+TGG 0.481444 7.2:+23367609 None:intergenic
ACCTCCAAATTGTATGGTGC+AGG 0.482330 7.2:+23365234 None:intergenic
GTTCTGCGCCTGATGAATAC+TGG 0.484039 7.2:+23365474 None:intergenic
CAAACTTGAGGACAAGTAAA+CGG 0.484302 7.2:+23365604 None:intergenic
CACCAGGAGGAAACCGTTCA+TGG 0.490179 7.2:+23365694 None:intergenic
GTTGGTACCTCCAAATTGTA+TGG 0.490642 7.2:+23365228 None:intergenic
AGTAGTGCCTGGCTCAATGC+TGG 0.496319 7.2:+23365521 None:intergenic
AGTGGAAGAAGGCGGTGGGA+TGG 0.496402 7.2:+23367627 None:intergenic
ACCAACTTATTCATTCTTGG+AGG 0.499770 7.2:-23365211 MS.gene73382:CDS
TCCTCCAAGAATGAATAAGT+TGG 0.514284 7.2:+23365210 None:intergenic
GAGAAAGAATTCAGGGTGGA+TGG 0.515260 7.2:+23367576 None:intergenic
GGGAAAACACTTACCTCTGA+AGG 0.518069 7.2:+23367552 None:intergenic
AAGTAAGGATGTTCTTGCTA+TGG 0.519506 7.2:-23365565 MS.gene73382:CDS
AACCATGAACGGTTTCCTCC+TGG 0.520987 7.2:-23365696 MS.gene73382:CDS
GAGGAAAACAAGTTGTTGAT+CGG 0.524976 7.2:-23365192 MS.gene73382:CDS
CCAGAATGGCTCGTTGTGAT+CGG 0.536344 7.2:-23365369 MS.gene73382:CDS
ATCGGTGTTTGCACACATCT+GGG 0.542075 7.2:-23365351 MS.gene73382:CDS
CGTTGATCGGAAGTGGAAGA+AGG 0.544759 7.2:+23367616 None:intergenic
GATCTGTCCAGCATTGAGCC+AGG 0.548945 7.2:-23365528 MS.gene73382:CDS
GCACTACTGTCACTGTTAAG+TGG 0.549316 7.2:-23365506 MS.gene73382:CDS
TGAAGGGGAGAAAGAATTCA+GGG 0.553314 7.2:+23367569 None:intergenic
TATTTCTGGCAGAATTAGGA+AGG 0.553507 7.2:-23365259 MS.gene73382:CDS
CTCTCTCAGAATCTTGCTGA+GGG 0.558977 7.2:+23365400 None:intergenic
ATGCTGGAGACTTTGGCGGA+TGG 0.561425 7.2:-23365311 MS.gene73382:CDS
GGGGTCAGATCTGCGTTGAT+CGG 0.562035 7.2:+23367603 None:intergenic
TCGGAAGTGGAAGAAGGCGG+TGG 0.567035 7.2:+23367622 None:intergenic
GAATTCTTTCTCCCCTTCAG+AGG 0.567157 7.2:-23367565 MS.gene73382:intron
TTGGCAAACAGTGTTGATGT+TGG 0.567703 7.2:-23365435 MS.gene73382:CDS
ACTCTCTCAGAATCTTGCTG+AGG 0.573430 7.2:+23365399 None:intergenic
GGAAAACACTTACCTCTGAA+GGG 0.576686 7.2:+23367553 None:intergenic
TTAACAGTGACAGTAGTGCC+TGG 0.588903 7.2:+23365510 None:intergenic
GCATACTTTGTCCTAACAGG+TGG 0.589727 7.2:-23365651 MS.gene73382:CDS
ACTGTCACTGTTAAGTGGCG+TGG 0.593737 7.2:-23365501 MS.gene73382:CDS
CGGAAGTGGAAGAAGGCGGT+GGG 0.595629 7.2:+23367623 None:intergenic
TCATAATGAGATCCATGACA+TGG 0.597841 7.2:+23365282 None:intergenic
ATGATGAACACAACCATGAA+CGG 0.601838 7.2:-23365707 MS.gene73382:CDS
AAAGTCTCCAGCATTTGGCA+AGG 0.607108 7.2:+23365320 None:intergenic
ACTTTGTCCTAACAGGTGGA+AGG 0.607644 7.2:-23365647 MS.gene73382:CDS
AGAGAGTCAAGAACCCAGAA+TGG 0.614301 7.2:-23365383 MS.gene73382:CDS
ACCTGCACCATACAATTTGG+AGG 0.619569 7.2:-23365235 MS.gene73382:CDS
GAAAACACTTACCTCTGAAG+GGG 0.626939 7.2:+23367554 None:intergenic
ACATGCTGAGCACAAACTTG+AGG 0.627184 7.2:+23365592 None:intergenic
ATTCAGGGTGGATGGAAAAG+GGG 0.632839 7.2:+23367584 None:intergenic
AGCAAGAACATCCTTACTTG+CGG 0.635054 7.2:+23365569 None:intergenic
AAGTCTCCAGCATTTGGCAA+GGG 0.635128 7.2:+23365321 None:intergenic
ATTTCTGGCAGAATTAGGAA+GGG 0.638657 7.2:-23365258 MS.gene73382:CDS
CTCCTGGTGATCCAAGCAAG+AGG 0.642258 7.2:-23365680 MS.gene73382:CDS
TCCTGGTGATCCAAGCAAGA+GGG 0.654973 7.2:-23365679 MS.gene73382:CDS
CATAATGAGATCCATGACAT+GGG 0.657346 7.2:+23365283 None:intergenic
GACAAGTAAACGGATCAAAG+AGG 0.665826 7.2:+23365614 None:intergenic
CTCTTGCTTGGATCACCAGG+AGG 0.672619 7.2:+23365681 None:intergenic
TGATCGGAAGTGGAAGAAGG+CGG 0.715230 7.2:+23367619 None:intergenic
AGGGGAGAAAGAATTCAGGG+TGG 0.779436 7.2:+23367572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATTAAATCAATTAA+TGG + chr7.2:23367022-23367041 None:intergenic 10.0%
!!! ATTTATATTTTTATCTAACT+AGG - chr7.2:23366989-23367008 MS.gene73382:intron 10.0%
!!! CAACAAAAAATATTTTTTTT+AGG + chr7.2:23365706-23365725 None:intergenic 10.0%
!!! TTTGTTAAATATTTTATAGA+TGG - chr7.2:23365801-23365820 MS.gene73382:CDS 10.0%
!!! TTTTTATGATTTTCATTATT+TGG - chr7.2:23365490-23365509 MS.gene73382:CDS 10.0%
!! AAAATATTTAACAAAATAGG+TGG + chr7.2:23365796-23365815 None:intergenic 15.0%
!!! TAATGATAAAATGTTTTTTG+TGG - chr7.2:23365940-23365959 MS.gene73382:intron 15.0%
!!! TTTAGTTGTTACTTTTTTAT+GGG - chr7.2:23366104-23366123 MS.gene73382:intron 15.0%
!!! TTTTAGTTGTTACTTTTTTA+TGG - chr7.2:23366103-23366122 MS.gene73382:intron 15.0%
!! AAGATAGCAATTTAGTATTA+TGG + chr7.2:23366505-23366524 None:intergenic 20.0%
!! TTAGAAAACAACAGTTAATA+AGG + chr7.2:23366138-23366157 None:intergenic 20.0%
!!! AATAGTTTTGCTATTCATTT+AGG - chr7.2:23366418-23366437 MS.gene73382:intron 20.0%
!!! AATTTATGTGTTTAGGTTTT+CGG - chr7.2:23365517-23365536 MS.gene73382:CDS 20.0%
!!! ACATAAATTACTTTTTTCCA+GGG - chr7.2:23366168-23366187 MS.gene73382:intron 20.0%
!!! ATTTGATTCGTTTTATGTTA+GGG - chr7.2:23365402-23365421 MS.gene73382:CDS 20.0%
!!! TACATAAATTACTTTTTTCC+AGG - chr7.2:23366167-23366186 MS.gene73382:intron 20.0%
! AAAAGACATGAATATAGGAA+TGG - chr7.2:23366364-23366383 MS.gene73382:intron 25.0%
! AAGTGTAAAGTAACTGATAA+GGG + chr7.2:23366263-23366282 None:intergenic 25.0%
! AATTATTCTATGTGTAGGTA+AGG - chr7.2:23366794-23366813 MS.gene73382:intron 25.0%
! ACCTTAAAAGACATGAATAT+AGG - chr7.2:23366359-23366378 MS.gene73382:intron 25.0%
! AGTTGCATATTATCTTACTT+TGG - chr7.2:23366883-23366902 MS.gene73382:intron 25.0%
! ATTAAACCAGAGTTTCAAAA+AGG + chr7.2:23365924-23365943 None:intergenic 25.0%
! ATTATGAACGAGGTATAATT+CGG - chr7.2:23365978-23365997 MS.gene73382:intron 25.0%
! GATCTATTAAGTTTGAATAG+AGG + chr7.2:23366839-23366858 None:intergenic 25.0%
! GCAATAATTATTCTATGTGT+AGG - chr7.2:23366789-23366808 MS.gene73382:intron 25.0%
! GTTGCATATTATCTTACTTT+GGG - chr7.2:23366884-23366903 MS.gene73382:intron 25.0%
! TAAAAAACTGCATGTTTAGT+TGG - chr7.2:23366595-23366614 MS.gene73382:intron 25.0%
! TAAGTGTAAAGTAACTGATA+AGG + chr7.2:23366264-23366283 None:intergenic 25.0%
! TGGTGATAATTTATGTGTTT+AGG - chr7.2:23365510-23365529 MS.gene73382:CDS 25.0%
! TGGTTATTGAATTGTTTAGT+TGG - chr7.2:23366615-23366634 MS.gene73382:intron 25.0%
! TTGCATATTATCTTACTTTG+GGG - chr7.2:23366885-23366904 MS.gene73382:intron 25.0%
!! ATTTTAAACCATTATGAACG+AGG - chr7.2:23365968-23365987 MS.gene73382:intron 25.0%
!! TAATTAGAAACAATTTTCCC+TGG + chr7.2:23366188-23366207 None:intergenic 25.0%
!! TATCTATCTGTTCCATTTTA+TGG - chr7.2:23366715-23366734 MS.gene73382:intron 25.0%
!! TCATATACAATCTTTGAAGA+TGG + chr7.2:23367136-23367155 None:intergenic 25.0%
!! TCCTATATTCATGTCTTTTA+AGG + chr7.2:23366363-23366382 None:intergenic 25.0%
!!! GATTTGATTCGTTTTATGTT+AGG - chr7.2:23365401-23365420 MS.gene73382:CDS 25.0%
!!! TGACCCAAAATACTTTTTTA+GGG - chr7.2:23366640-23366659 MS.gene73382:intron 25.0%
!!! TGTTAATTTTTTGCGCTATT+TGG - chr7.2:23365661-23365680 MS.gene73382:CDS 25.0%
!!! TTGACCCAAAATACTTTTTT+AGG - chr7.2:23366639-23366658 MS.gene73382:intron 25.0%
AAAAGTTTCTTGTATCTGCA+CGG + chr7.2:23365873-23365892 None:intergenic 30.0%
ATGACTATATCAAAACTGGA+AGG - chr7.2:23366040-23366059 MS.gene73382:intron 30.0%
CATAGTAAAATAACAGGCAA+GGG + chr7.2:23365330-23365349 None:intergenic 30.0%
CGCAAAAAATTAACATGCTT+CGG + chr7.2:23365656-23365675 None:intergenic 30.0%
GAATTATACCTCGTTCATAA+TGG + chr7.2:23365979-23365998 None:intergenic 30.0%
GGATCTCATTATGATATTTC+TGG - chr7.2:23367586-23367605 MS.gene73382:CDS 30.0%
GTGTTTATTGTTGTGTATGA+AGG - chr7.2:23365462-23365481 MS.gene73382:CDS 30.0%
TACACTTATGTACCAATGAA+AGG - chr7.2:23366276-23366295 MS.gene73382:intron 30.0%
TCGTGATTCTCTACAATAAA+AGG + chr7.2:23365850-23365869 None:intergenic 30.0%
TGACTATATCAAAACTGGAA+GGG - chr7.2:23366041-23366060 MS.gene73382:intron 30.0%
TGCATATTATCTTACTTTGG+GGG - chr7.2:23366886-23366905 MS.gene73382:intron 30.0%
TTCCATGACTATATCAAAAC+TGG - chr7.2:23366036-23366055 MS.gene73382:intron 30.0%
! ATATATGTCTTTTTCCGTTG+TGG - chr7.2:23365739-23365758 MS.gene73382:CDS 30.0%
! TAAGGCTGATCTATTCTTTT+GGG - chr7.2:23366812-23366831 MS.gene73382:intron 30.0%
! TATATGTCTTTTTCCGTTGT+GGG - chr7.2:23365740-23365759 MS.gene73382:CDS 30.0%
! TTATAGATGGTTTTCATTCG+TGG - chr7.2:23365814-23365833 MS.gene73382:intron 30.0%
!! ATGATATTTCTGGCAGAATT+AGG - chr7.2:23367596-23367615 MS.gene73382:CDS 30.0%
!! GATTTAATTTGATTGCATCC+AGG - chr7.2:23367028-23367047 MS.gene73382:intron 30.0%
!! TTCCAGTTTTGATATAGTCA+TGG + chr7.2:23366041-23366060 None:intergenic 30.0%
!!! CCACCCTAAAAAAGTATTTT+GGG + chr7.2:23366646-23366665 None:intergenic 30.0%
!!! TAATGCTGTTTTCTTTTGTG+TGG + chr7.2:23367075-23367094 None:intergenic 30.0%
!!! TCCACCCTAAAAAAGTATTT+TGG + chr7.2:23366647-23366666 None:intergenic 30.0%
AACAGATGACGATGTGAAAT+TGG - chr7.2:23367405-23367424 MS.gene73382:intron 35.0%
AAGTAAGGATGTTCTTGCTA+TGG - chr7.2:23367294-23367313 MS.gene73382:intron 35.0%
AATACTCTCTCACCTTTCAT+TGG + chr7.2:23366291-23366310 None:intergenic 35.0%
ACCAACTTATTCATTCTTGG+AGG - chr7.2:23367648-23367667 MS.gene73382:intron 35.0%
ACCAGAGGTAAACCATAAAA+TGG + chr7.2:23366730-23366749 None:intergenic 35.0%
AGACATGAATATAGGAATGG+AGG - chr7.2:23366367-23366386 MS.gene73382:intron 35.0%
ATATGAACATCCCAGAAGAT+TGG + chr7.2:23365551-23365570 None:intergenic 35.0%
ATGATGAACACAACCATGAA+CGG - chr7.2:23367152-23367171 MS.gene73382:intron 35.0%
CAAACTTGAGGACAAGTAAA+CGG + chr7.2:23367258-23367277 None:intergenic 35.0%
CACTGCCATAGTAAAATAAC+AGG + chr7.2:23365336-23365355 None:intergenic 35.0%
CATAATGAGATCCATGACAT+GGG + chr7.2:23367579-23367598 None:intergenic 35.0%
CCATAGTAAAATAACAGGCA+AGG + chr7.2:23365331-23365350 None:intergenic 35.0%
GACATGAATATAGGAATGGA+GGG - chr7.2:23366368-23366387 MS.gene73382:intron 35.0%
GAGGAAAACAAGTTGTTGAT+CGG - chr7.2:23367667-23367686 MS.gene73382:intron 35.0%
GGATTTGATTCCAATCTTCT+GGG - chr7.2:23365538-23365557 MS.gene73382:CDS 35.0%
GGTACCAACTTATTCATTCT+TGG - chr7.2:23367645-23367664 MS.gene73382:intron 35.0%
TCATAATGAGATCCATGACA+TGG + chr7.2:23367580-23367599 None:intergenic 35.0%
TCCTCCAAGAATGAATAAGT+TGG + chr7.2:23367652-23367671 None:intergenic 35.0%
! GTAAGGCTGATCTATTCTTT+TGG - chr7.2:23366811-23366830 MS.gene73382:intron 35.0%
! TCCATTTTATGGTTTACCTC+TGG - chr7.2:23366726-23366745 MS.gene73382:intron 35.0%
!! ATTTCTGGCAGAATTAGGAA+GGG - chr7.2:23367601-23367620 MS.gene73382:CDS 35.0%
!! TATTTCTGGCAGAATTAGGA+AGG - chr7.2:23367600-23367619 MS.gene73382:CDS 35.0%
!!! CCCAAAATACTTTTTTAGGG+TGG - chr7.2:23366643-23366662 MS.gene73382:intron 35.0%
!!! CCTTGCCTGTTATTTTACTA+TGG - chr7.2:23365328-23365347 MS.gene73382:CDS 35.0%
!!! CTGTTATTTTACTATGGCAG+TGG - chr7.2:23365334-23365353 MS.gene73382:CDS 35.0%
AAACAAACCTTCCACCTGTT+AGG + chr7.2:23367222-23367241 None:intergenic 40.0%
AATTCAGGGTGGATGGAAAA+GGG + chr7.2:23365279-23365298 None:intergenic 40.0%
ACCAGAGTTTCAAAAAGGTG+AGG + chr7.2:23365919-23365938 None:intergenic 40.0%
AGCAAGAACATCCTTACTTG+CGG + chr7.2:23367293-23367312 None:intergenic 40.0%
ATTGTGCGTATGCTATTCGT+TGG - chr7.2:23366928-23366947 MS.gene73382:intron 40.0%
CCAGAGTTTCAAAAAGGTGA+GGG + chr7.2:23365918-23365937 None:intergenic 40.0%
CGGATTTGATTCCAATCTTC+TGG - chr7.2:23365537-23365556 MS.gene73382:CDS 40.0%
GAAACAGTTGCAGGAATTTC+AGG + chr7.2:23367100-23367119 None:intergenic 40.0%
GACAAGTAAACGGATCAAAG+AGG + chr7.2:23367248-23367267 None:intergenic 40.0%
GATCAAATGATACAGACCAG+AGG + chr7.2:23366745-23366764 None:intergenic 40.0%
GGAAAACACTTACCTCTGAA+GGG + chr7.2:23365309-23365328 None:intergenic 40.0%
GTTGGTACCTCCAAATTGTA+TGG + chr7.2:23367634-23367653 None:intergenic 40.0%
TGAAGGGGAGAAAGAATTCA+GGG + chr7.2:23365293-23365312 None:intergenic 40.0%
TTAACAGCAGAAACAGTTGC+AGG + chr7.2:23367109-23367128 None:intergenic 40.0%
TTCGCATACTTTGTCCTAAC+AGG - chr7.2:23367205-23367224 MS.gene73382:intron 40.0%
TTGTGCGTATGCTATTCGTT+GGG - chr7.2:23366929-23366948 MS.gene73382:intron 40.0%
! GAAAACACTTACCTCTGAAG+GGG + chr7.2:23365308-23365327 None:intergenic 40.0%
! GTGTGTTTGAAGTAGAATCG+AGG - chr7.2:23365594-23365613 MS.gene73382:CDS 40.0%
! GTTTGAAGTAGAATCGAGGA+TGG - chr7.2:23365598-23365617 MS.gene73382:CDS 40.0%
! TTGGGTTGTGTGTTAGTATG+AGG - chr7.2:23366947-23366966 MS.gene73382:intron 40.0%
!! TTGGCAAACAGTGTTGATGT+TGG - chr7.2:23367424-23367443 MS.gene73382:intron 40.0%
AAAGTCTCCAGCATTTGGCA+AGG + chr7.2:23367542-23367561 None:intergenic 45.0%
AAGTCTCCAGCATTTGGCAA+GGG + chr7.2:23367541-23367560 None:intergenic 45.0%
ACATGCTGAGCACAAACTTG+AGG + chr7.2:23367270-23367289 None:intergenic 45.0%
ACCTCCAAATTGTATGGTGC+AGG + chr7.2:23367628-23367647 None:intergenic 45.0%
ACCTGCACCATACAATTTGG+AGG - chr7.2:23367624-23367643 MS.gene73382:CDS 45.0%
ACTCTCTCAGAATCTTGCTG+AGG + chr7.2:23367463-23367482 None:intergenic 45.0%
ACTTTGTCCTAACAGGTGGA+AGG - chr7.2:23367212-23367231 MS.gene73382:intron 45.0%
AGAGAGTCAAGAACCCAGAA+TGG - chr7.2:23367476-23367495 MS.gene73382:intron 45.0%
AGTGACTCAGTAGCAAAACC+TGG + chr7.2:23367049-23367068 None:intergenic 45.0%
ATTCAGGGTGGATGGAAAAG+GGG + chr7.2:23365278-23365297 None:intergenic 45.0%
CTCTCTCAGAATCTTGCTGA+GGG + chr7.2:23367462-23367481 None:intergenic 45.0%
CTGAAGGGGAGAAAGAATTC+AGG + chr7.2:23365294-23365313 None:intergenic 45.0%
GAATTCAGGGTGGATGGAAA+AGG + chr7.2:23365280-23365299 None:intergenic 45.0%
GAATTCTTTCTCCCCTTCAG+AGG - chr7.2:23365294-23365313 MS.gene73382:CDS 45.0%
GAGAAAGAATTCAGGGTGGA+TGG + chr7.2:23365286-23365305 None:intergenic 45.0%
GCACTACTGTCACTGTTAAG+TGG - chr7.2:23367353-23367372 MS.gene73382:intron 45.0%
GCATACTTTGTCCTAACAGG+TGG - chr7.2:23367208-23367227 MS.gene73382:intron 45.0%
GGGAAAACACTTACCTCTGA+AGG + chr7.2:23365310-23365329 None:intergenic 45.0%
GTGGAAAGCCAGTATTCATC+AGG - chr7.2:23367377-23367396 MS.gene73382:intron 45.0%
GTTCTTAGAGAGGAAAGAGG+AGG + chr7.2:23365211-23365230 None:intergenic 45.0%
TTAACAGTGACAGTAGTGCC+TGG + chr7.2:23367352-23367371 None:intergenic 45.0%
TTGCAGTTCCAAACCCACAA+CGG + chr7.2:23365756-23365775 None:intergenic 45.0%
TTGCCAAATGCTGGAGACTT+TGG - chr7.2:23367541-23367560 MS.gene73382:intron 45.0%
! AAAGGTGAGGGAGCATGATT+TGG + chr7.2:23365906-23365925 None:intergenic 45.0%
! AAGGTGAGGGAGCATGATTT+GGG + chr7.2:23365905-23365924 None:intergenic 45.0%
! ATCGGTGTTTGCACACATCT+GGG - chr7.2:23367508-23367527 MS.gene73382:intron 45.0%
! GTCTTTTTCCGTTGTGGGTT+TGG - chr7.2:23365745-23365764 MS.gene73382:CDS 45.0%
!!! CCCTCACCTTTTTGAAACTC+TGG - chr7.2:23365915-23365934 MS.gene73382:intron 45.0%
!! TATAAAATATTTAACAAAAT+AGG + chr7.2:23365799-23365818 None:intergenic 5.0%
AACCATGAACGGTTTCCTCC+TGG - chr7.2:23367163-23367182 MS.gene73382:intron 50.0%
ACTGTCACTGTTAAGTGGCG+TGG - chr7.2:23367358-23367377 MS.gene73382:intron 50.0%
AGGGGAGAAAGAATTCAGGG+TGG + chr7.2:23365290-23365309 None:intergenic 50.0%
CCAAATGCTGGAGACTTTGG+CGG - chr7.2:23367544-23367563 MS.gene73382:intron 50.0%
CCAGAATGGCTCGTTGTGAT+CGG - chr7.2:23367490-23367509 MS.gene73382:intron 50.0%
CGATCACAACGAGCCATTCT+GGG + chr7.2:23367492-23367511 None:intergenic 50.0%
CGTTGATCGGAAGTGGAAGA+AGG + chr7.2:23365246-23365265 None:intergenic 50.0%
CTTAGAGAGGAAAGAGGAGG+CGG + chr7.2:23365208-23365227 None:intergenic 50.0%
GGGACCTGCACCATACAATT+TGG - chr7.2:23367621-23367640 MS.gene73382:CDS 50.0%
GGGGTTCTTAGAGAGGAAAG+AGG + chr7.2:23365214-23365233 None:intergenic 50.0%
GTTCTGCGCCTGATGAATAC+TGG + chr7.2:23367388-23367407 None:intergenic 50.0%
TATGCGAATGCCCTCTTGCT+TGG + chr7.2:23367193-23367212 None:intergenic 50.0%
TCCTGGTGATCCAAGCAAGA+GGG - chr7.2:23367180-23367199 MS.gene73382:intron 50.0%
TGATCGGAAGTGGAAGAAGG+CGG + chr7.2:23365243-23365262 None:intergenic 50.0%
TGCATTCCCTTGCCAAATGC+TGG - chr7.2:23367532-23367551 MS.gene73382:intron 50.0%
! AGATCTGCGTTGATCGGAAG+TGG + chr7.2:23365253-23365272 None:intergenic 50.0%
! GATCGGTGTTTGCACACATC+TGG - chr7.2:23367507-23367526 MS.gene73382:intron 50.0%
!! GGATGGTTTTGCCCATGTCA+TGG - chr7.2:23367565-23367584 MS.gene73382:intron 50.0%
AGTAGTGCCTGGCTCAATGC+TGG + chr7.2:23367341-23367360 None:intergenic 55.0%
ATGCTGGAGACTTTGGCGGA+TGG - chr7.2:23367548-23367567 MS.gene73382:intron 55.0%
CACCAGGAGGAAACCGTTCA+TGG + chr7.2:23367168-23367187 None:intergenic 55.0%
CCGATCACAACGAGCCATTC+TGG + chr7.2:23367493-23367512 None:intergenic 55.0%
CCGCCAAAGTCTCCAGCATT+TGG + chr7.2:23367547-23367566 None:intergenic 55.0%
CTCCTGGTGATCCAAGCAAG+AGG - chr7.2:23367179-23367198 MS.gene73382:intron 55.0%
CTCTTGCTTGGATCACCAGG+AGG + chr7.2:23367181-23367200 None:intergenic 55.0%
GCTCAGCATGTCCGCAAGTA+AGG - chr7.2:23367279-23367298 MS.gene73382:intron 55.0%
GTGGGATGGGGTTCTTAGAG+AGG + chr7.2:23365221-23365240 None:intergenic 55.0%
! GATCTGTCCAGCATTGAGCC+AGG - chr7.2:23367331-23367350 MS.gene73382:intron 55.0%
! GGGGTCAGATCTGCGTTGAT+CGG + chr7.2:23365259-23365278 None:intergenic 55.0%
AGTGGAAGAAGGCGGTGGGA+TGG + chr7.2:23365235-23365254 None:intergenic 60.0%
CGGAAGTGGAAGAAGGCGGT+GGG + chr7.2:23365239-23365258 None:intergenic 60.0%
GCCCTCTTGCTTGGATCACC+AGG + chr7.2:23367184-23367203 None:intergenic 60.0%
GTGGAAGAAGGCGGTGGGAT+GGG + chr7.2:23365234-23365253 None:intergenic 60.0%
TCGGAAGTGGAAGAAGGCGG+TGG + chr7.2:23365240-23365259 None:intergenic 60.0%
TGGAAGAAGGCGGTGGGATG+GGG + chr7.2:23365233-23365252 None:intergenic 60.0%
AGAGGAAAGAGGAGGCGGCG+TGG + chr7.2:23365203-23365222 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 23365188 23367693 23365188 ID=MS.gene73382
chr7.2 mRNA 23365188 23367693 23365188 ID=MS.gene73382.t1;Parent=MS.gene73382
chr7.2 exon 23367688 23367693 23367688 ID=MS.gene73382.t1.exon1;Parent=MS.gene73382.t1
chr7.2 CDS 23367688 23367693 23367688 ID=cds.MS.gene73382.t1;Parent=MS.gene73382.t1
chr7.2 exon 23367566 23367653 23367566 ID=MS.gene73382.t1.exon2;Parent=MS.gene73382.t1
chr7.2 CDS 23367566 23367653 23367566 ID=cds.MS.gene73382.t1;Parent=MS.gene73382.t1
chr7.2 exon 23365188 23365831 23365188 ID=MS.gene73382.t1.exon3;Parent=MS.gene73382.t1
chr7.2 CDS 23365188 23365831 23365188 ID=cds.MS.gene73382.t1;Parent=MS.gene73382.t1
Gene Sequence

>MS.gene73382

ATGGAGGTCTTACCACGCCGCCTCCTCTTTCCTCTCTAAGAACCCCATCCCACCGCCTTCTTCCACTTCCGATCAACGCAGATCTGACCCCTTTTCCATCCACCCTGAATTCTTTCTCCCCTTCAGAGGTAAGTGTTTTCCCTTGCCTGTTATTTTACTATGGCAGTGGAATTATTCGAGAAATGATTCATTTTTATTCTGTCTTGTCTGTTTGATTTGATTCGTTTTATGTTAGGGTTGTTGATTGATTCATTTTTTGATTTGATTGTTTTTTGTGTTTATTGTTGTGTATGAAGGTAGAATTTTTATGATTTTCATTATTTGGTGATAATTTATGTGTTTAGGTTTTCGGATTTGATTCCAATCTTCTGGGATGTTCATATGTTAGTTTGAATTTTCTTAAGCTGTGTGTTTGAAGTAGAATCGAGGATGGTATGAGAAATGAGAATCATCTACTTTCAAGCACCGAAGCATGTTAATTTTTTGCGCTATTTGGTGATTATTTTTTTGTTACTCCTAAAAAAAATATTTTTTGTTGAAATTTGATTGAGATATATGTCTTTTTCCGTTGTGGGTTTGGAACTGCAAGTTTGAACAGATTGAAGCCACCTATTTTGTTAAATATTTTATAGATGGTTTTCATTCGTGGTTATCATGATCCTTTTATTGTAGAGAATCACGACCGTGCAGATACAAGAAACTTTTTTATTGCAACCCAAATCATGCTCCCTCACCTTTTTGAAACTCTGGTTTAATGATAAAATGTTTTTTGTGGATGAAATTTTAAACCATTATGAACGAGGTATAATTCGGAGTTTCTGTAATGAATATTTAGTTGTTGATTGTTGTTCCATGACTATATCAAAACTGGAAGGGTCATCTTGATAGTTGACAGATTTATACTTACTCTGTTCATTTTAGTTGTTACTTTTTTATGGGAAAATGTTCCTTATTAACTGTTGTTTTCTAATTTCAAGCTTACATAAATTACTTTTTTCCAGGGAAAATTGTTTCTAATTATCTGTTGTTTTCGATTTTCAAGCTTACGTTAATTACTTTTTTGTCAGTTATACCCTTATCAGTTACTTTACACTTATGTACCAATGAAAGGTGAGAGAGTATTTTGAAATTTACTTATTAATTGAAGTAATCTATTGCTTTGTGCAAAACAACCTTAAAAGACATGAATATAGGAATGGAGGGAGTACAACTCTTGCATTGTAGTAAAAAAATAGTTTTGCTATTCATTTAGGAATAAAAAATATGAACTAACATGTCTAATAAGTTACTGCTGATCTATTTGAATCATATTTTCCATAATACTAAATTGCTATCTTCAAAATTTTATTTGATGAAGTTGCAAATTAGAATGTTTTGCGCTTTGAATTCTAACTGAAATTTTGAAATTAAAAAACTGCATGTTTAGTTGGTTATTGAATTGTTTAGTTGGATTGACCCAAAATACTTTTTTAGGGTGGATGATATGTTGTATGTATACTTGTTTAGTTGTGTGTATATGTTGTAAGTTATCTATCTGTTCCATTTTATGGTTTACCTCTGGTCTGTATCATTTGATCTAGACTTCAAAACAATTTGTTTATGCAATAATTATTCTATGTGTAGGTAAGGCTGATCTATTCTTTTGGGACCTCTATTCAAACTTAATAGATCATAGATAATTGATTTGCAAATTGCAGTTGCATATTATCTTACTTTGGGGGATTGATTTTGTAGTTTCTAATTGTGCGTATGCTATTCGTTGGGTTGTGTGTTAGTATGAGGCTTGTGTTTTCTTCACTCAATTTATATTTTTATCTAACTAGGTATAACTCCATTAATTGATTTAATTTGATTGCATCCAGGTTTTGCTACTGAGTCACTGATCCACACAAAAGAAAACAGCATTATTCCTGAAATTCCTGCAACTGTTTCTGCTGTTAAAAATCCATCTTCAAAGATTGTATATGATGAACACAACCATGAACGGTTTCCTCCTGGTGATCCAAGCAAGAGGGCATTCGCATACTTTGTCCTAACAGGTGGAAGGTTTGTTTATGCCTCTTTGATCCGTTTACTTGTCCTCAAGTTTGTGCTCAGCATGTCCGCAAGTAAGGATGTTCTTGCTATGGCTTCACTTGAAGTTGATCTGTCCAGCATTGAGCCAGGCACTACTGTCACTGTTAAGTGGCGTGGAAAGCCAGTATTCATCAGGCGCAGAACAGATGACGATGTGAAATTGGCAAACAGTGTTGATGTTGGATCTCTTCGTGACCCTCAGCAAGATTCTGAGAGAGTCAAGAACCCAGAATGGCTCGTTGTGATCGGTGTTTGCACACATCTGGGTTGCATTCCCTTGCCAAATGCTGGAGACTTTGGCGGATGGTTTTGCCCATGTCATGGATCTCATTATGATATTTCTGGCAGAATTAGGAAGGGACCTGCACCATACAATTTGGAGGTACCAACTTATTCATTCTTGGAGGAAAACAAGTTGTTGATCGGTTAA
Protein sequence

>MS.gene73382.t1

MENPIPPPSSTSDQRRSDPFSIHPEFFLPFRGFATESLIHTKENSIIPEIPATVSAVKNPSSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLAMASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDDDVKLANSVDVGSLRDPQQDSERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG