Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73383.t1 | XP_003624511.2 | 99.5 | 198 | 1 | 0 | 1 | 198 | 23 | 220 | 7.70E-110 | 406.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73383.t1 | O80438 | 86.8 | 159 | 21 | 0 | 13 | 171 | 8 | 166 | 7.9e-79 | 294.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73383.t1 | G7KXA5 | 99.5 | 198 | 1 | 0 | 1 | 198 | 1 | 198 | 5.6e-110 | 406.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene73383.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051756 | MS.gene73383 | 0.824486 | 7.86E-54 | -1.69E-46 |
| MS.gene051903 | MS.gene73383 | 0.806721 | 7.17E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene73383 | 0.831882 | 1.30E-55 | -1.69E-46 |
| MS.gene058906 | MS.gene73383 | 0.807221 | 5.62E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene73383 | 0.811249 | 7.69E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73383.t1 | MTR_7g084140 | 99.495 | 198 | 1 | 0 | 1 | 198 | 1 | 198 | 1.33e-147 | 408 |
| MS.gene73383.t1 | MTR_3g034200 | 32.117 | 137 | 90 | 3 | 43 | 176 | 23 | 159 | 1.10e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73383.t1 | AT2G38130 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 6.91e-103 | 295 |
| MS.gene73383.t1 | AT2G38130 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 6.91e-103 | 295 |
| MS.gene73383.t1 | AT5G13780 | 31.746 | 126 | 83 | 3 | 43 | 165 | 23 | 148 | 6.72e-11 | 59.3 |
Find 49 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCCGCCTTGGCTTTATT+AGG | 0.293449 | 7.2:+23372185 | MS.gene73383:CDS |
| TGGCCGCCTTGGCTTTATTA+GGG | 0.308261 | 7.2:+23372186 | MS.gene73383:CDS |
| GATTTCTGTTTCGTCTTTGT+TGG | 0.315027 | 7.2:-23369151 | None:intergenic |
| GGGCACGGTGGTTTGTAAAA+TGG | 0.322086 | 7.2:+23369477 | MS.gene73383:CDS |
| TCTAGAGGTGCGTGCAAGTC+TGG | 0.341191 | 7.2:-23372277 | None:intergenic |
| GGCACGGTGGTTTGTAAAAT+GGG | 0.366067 | 7.2:+23369478 | MS.gene73383:CDS |
| GAAGCAGAAGTCACAAATAA+AGG | 0.367029 | 7.2:+23372148 | MS.gene73383:CDS |
| CTTGCTCTGTATGGCCGCCT+TGG | 0.385195 | 7.2:+23372175 | MS.gene73383:CDS |
| ATCGCTACTTCGTCTATCTA+TGG | 0.412371 | 7.2:+23369295 | MS.gene73383:CDS |
| ATTTCTGTTTCGTCTTTGTT+GGG | 0.419367 | 7.2:-23369150 | None:intergenic |
| CTAGACTCACCGGATAAATA+CGG | 0.441585 | 7.2:+23372295 | MS.gene73383:CDS |
| CCAATGCCTCTTCCTCTGTA+GGG | 0.454470 | 7.2:-23369553 | None:intergenic |
| CGCTGAGTTCTTCGTCGACA+AGG | 0.454965 | 7.2:-23369251 | None:intergenic |
| CAGCCACAGAACTTGTTACT+AGG | 0.457121 | 7.2:+23369993 | MS.gene73383:intron |
| CGATAGGTGAAGATGGAGTA+AGG | 0.474230 | 7.2:-23369276 | None:intergenic |
| ATGTGGCTCCCGTATTTATC+CGG | 0.481987 | 7.2:-23372304 | None:intergenic |
| AAAGGAGCACTTGCTCTGTA+TGG | 0.485924 | 7.2:+23372166 | MS.gene73383:CDS |
| ATCAAAGTGATGATGGAATC+TGG | 0.488662 | 7.2:+23370019 | MS.gene73383:CDS |
| CCCTACAGAGGAAGAGGCAT+TGG | 0.495396 | 7.2:+23369553 | MS.gene73383:CDS |
| TAGGTCTATCAAAGTGATGA+TGG | 0.496415 | 7.2:+23370012 | MS.gene73383:CDS |
| GAAGTAGCGATAGGTGAAGA+TGG | 0.509096 | 7.2:-23369283 | None:intergenic |
| ACCAATGCCTCTTCCTCTGT+AGG | 0.521245 | 7.2:-23369554 | None:intergenic |
| ATCAAACCCTACAGAGGAAG+AGG | 0.528144 | 7.2:+23369547 | MS.gene73383:CDS |
| TTTCATAAGGGTAAATGTGT+GGG | 0.560965 | 7.2:+23369457 | MS.gene73383:CDS |
| CAAGGTTCATGATGAGAGGT+AGG | 0.571066 | 7.2:-23369233 | None:intergenic |
| TATACATTAACAGGTTACAT+TGG | 0.574035 | 7.2:+23372126 | MS.gene73383:intron |
| GTAGCTGATGTATTCAATCT+CGG | 0.580445 | 7.2:-23369196 | None:intergenic |
| TAGACTCACCGGATAAATAC+GGG | 0.590980 | 7.2:+23372296 | MS.gene73383:CDS |
| GCACGCACCTCTAGACTCAC+CGG | 0.601943 | 7.2:+23372285 | MS.gene73383:CDS |
| TAAGGGTAAATGTGTGGGCA+CGG | 0.602307 | 7.2:+23369462 | MS.gene73383:CDS |
| CGCCACGATCACTATGCATG+TGG | 0.608007 | 7.2:-23372321 | None:intergenic |
| GAGATTGAATACATCAGCTA+CGG | 0.624186 | 7.2:+23369198 | MS.gene73383:CDS |
| TATTTATCCGGTGAGTCTAG+AGG | 0.626348 | 7.2:-23372292 | None:intergenic |
| GGTGCGTGCAAGTCTGGACG+AGG | 0.630380 | 7.2:-23372271 | None:intergenic |
| GAGGAAATAAAAGTTTAAGA+CGG | 0.630576 | 7.2:-23372252 | None:intergenic |
| GCTTAGCCCTAATAAAGCCA+AGG | 0.631068 | 7.2:-23372192 | None:intergenic |
| TAGATAGACGAAGTAGCGAT+AGG | 0.633007 | 7.2:-23369292 | None:intergenic |
| AGCCACATGCATAGTGATCG+TGG | 0.635530 | 7.2:+23372319 | MS.gene73383:CDS |
| TCGACAAGGTTCATGATGAG+AGG | 0.638163 | 7.2:-23369237 | None:intergenic |
| CACGGTGGTTTGTAAAATGG+GGG | 0.647644 | 7.2:+23369480 | MS.gene73383:CDS |
| GTTGTTATCAAACCCTACAG+AGG | 0.653909 | 7.2:+23369541 | MS.gene73383:CDS |
| GCACGGTGGTTTGTAAAATG+GGG | 0.655026 | 7.2:+23369479 | MS.gene73383:CDS |
| ATTGAATACATCAGCTACGG+CGG | 0.665233 | 7.2:+23369201 | MS.gene73383:CDS |
| AGACCTAGTAACAAGTTCTG+TGG | 0.674745 | 7.2:-23369996 | None:intergenic |
| GGTACCAGAAAAGAAAGATG+AGG | 0.680873 | 7.2:-23369318 | None:intergenic |
| GGGTAAATGTGTGGGCACGG+TGG | 0.700892 | 7.2:+23369465 | MS.gene73383:CDS |
| TTGGCTTTATTAGGGCTAAG+CGG | 0.719008 | 7.2:+23372194 | MS.gene73383:CDS |
| GATGGAATCTGGTTGTGACG+AGG | 0.743372 | 7.2:+23370030 | MS.gene73383:CDS |
| TAGCCCTAATAAAGCCAAGG+CGG | 0.755354 | 7.2:-23372189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCAACATTATAAAAT+AGG | - | chr7.2:23372025-23372044 | None:intergenic | 10.0% |
| !!! | TTAACTTTTTTATTTTCATT+TGG | + | chr7.2:23369613-23369632 | MS.gene73383:intron | 10.0% |
| !! | TAATAAATCAAAGTGATTAA+CGG | - | chr7.2:23369394-23369413 | None:intergenic | 15.0% |
| !!! | AACAAATTATTTTCACATTT+AGG | + | chr7.2:23370547-23370566 | MS.gene73383:intron | 15.0% |
| !!! | AATGATTTTTTTTGCAAAAT+GGG | - | chr7.2:23371412-23371431 | None:intergenic | 15.0% |
| !!! | TAAATTGTGTTTAGATTTTT+TGG | + | chr7.2:23372059-23372078 | MS.gene73383:intron | 15.0% |
| !!! | TTATTTTCATTTGGTATAAT+GGG | + | chr7.2:23369622-23369641 | MS.gene73383:intron | 15.0% |
| !!! | TTTATTTTCATTTGGTATAA+TGG | + | chr7.2:23369621-23369640 | MS.gene73383:intron | 15.0% |
| !!! | TTTTTTTATACTTATTAGCT+GGG | + | chr7.2:23370587-23370606 | MS.gene73383:intron | 15.0% |
| !!! | TTTTTTTTATACTTATTAGC+TGG | + | chr7.2:23370586-23370605 | MS.gene73383:intron | 15.0% |
| !! | AAAAGAACTTATACTTACAT+AGG | + | chr7.2:23369825-23369844 | MS.gene73383:intron | 20.0% |
| !! | AAATATTATAGTCTCACATT+TGG | - | chr7.2:23370937-23370956 | None:intergenic | 20.0% |
| !! | ACAATTAAAGTTCAAATGTT+TGG | + | chr7.2:23371495-23371514 | MS.gene73383:intron | 20.0% |
| !! | CAATTAAAGTTCAAATGTTT+GGG | + | chr7.2:23371496-23371515 | MS.gene73383:intron | 20.0% |
| !! | GAAAATGTTATTAAGATAAG+TGG | - | chr7.2:23371028-23371047 | None:intergenic | 20.0% |
| !! | GTATATTTGGATTGTATTAT+TGG | + | chr7.2:23369644-23369663 | MS.gene73383:intron | 20.0% |
| !! | TCAAACAACACTATAATATT+TGG | + | chr7.2:23370437-23370456 | MS.gene73383:intron | 20.0% |
| !! | TTGAATATTTACTAGACATA+TGG | + | chr7.2:23372036-23372055 | MS.gene73383:intron | 20.0% |
| !!! | AGTGTAATTTTTCATTGAAA+AGG | - | chr7.2:23371138-23371157 | None:intergenic | 20.0% |
| !!! | CAATGATTTTTTTTGCAAAA+TGG | - | chr7.2:23371413-23371432 | None:intergenic | 20.0% |
| !!! | CATAACAAGTTTAAAATCAA+CGG | - | chr7.2:23371825-23371844 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATACAAACA+AGG | + | chr7.2:23369885-23369904 | MS.gene73383:intron | 20.0% |
| !!! | TTCTTTCTTTGTTTTGTTTT+AGG | + | chr7.2:23369432-23369451 | MS.gene73383:intron | 20.0% |
| !!! | TTTTCACCTTTTTATTATCT+GGG | + | chr7.2:23369353-23369372 | MS.gene73383:intron | 20.0% |
| !!! | TTTTGCAAAAAAAATCATTG+CGG | + | chr7.2:23371413-23371432 | MS.gene73383:intron | 20.0% |
| !!! | TTTTTTATACTTATTAGCTG+GGG | + | chr7.2:23370588-23370607 | MS.gene73383:intron | 20.0% |
| ! | AAAAAACAAGCAAAAGCTAA+AGG | - | chr7.2:23369969-23369988 | None:intergenic | 25.0% |
| ! | AAATACTTCAATTATGTTGG+TGG | + | chr7.2:23371988-23372007 | MS.gene73383:intron | 25.0% |
| ! | AAATAGTCTATTATTAGACG+CGG | - | chr7.2:23370777-23370796 | None:intergenic | 25.0% |
| ! | AAATGACCCAGATAATAAAA+AGG | - | chr7.2:23369362-23369381 | None:intergenic | 25.0% |
| ! | AAATTCACAAATCACATGAT+CGG | - | chr7.2:23371874-23371893 | None:intergenic | 25.0% |
| ! | AACTCTTTATAATCACGTAT+AGG | - | chr7.2:23369911-23369930 | None:intergenic | 25.0% |
| ! | AAGGATAATCAAATAGTTAG+AGG | - | chr7.2:23370847-23370866 | None:intergenic | 25.0% |
| ! | AATCATAAGCGCTTATTTAT+AGG | + | chr7.2:23370091-23370110 | MS.gene73383:intron | 25.0% |
| ! | ATCATAAGCGCTTATTTATA+GGG | + | chr7.2:23370092-23370111 | MS.gene73383:intron | 25.0% |
| ! | ATGTTGTATAGATTGTATAC+AGG | - | chr7.2:23371095-23371114 | None:intergenic | 25.0% |
| ! | GAGGAAATAAAAGTTTAAGA+CGG | - | chr7.2:23372255-23372274 | None:intergenic | 25.0% |
| ! | GTTCAAAGTTAAACACTTAT+AGG | + | chr7.2:23372087-23372106 | MS.gene73383:intron | 25.0% |
| ! | TAGCACTTAAATAAGGTAAA+CGG | - | chr7.2:23370336-23370355 | None:intergenic | 25.0% |
| ! | TATACATTAACAGGTTACAT+TGG | + | chr7.2:23372126-23372145 | MS.gene73383:intron | 25.0% |
| ! | TGTTGTATAGATTGTATACA+GGG | - | chr7.2:23371094-23371113 | None:intergenic | 25.0% |
| ! | TTCATCATTGTTCAACTTAT+TGG | + | chr7.2:23371957-23371976 | MS.gene73383:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr7.2:23369725-23369744 | None:intergenic | 25.0% |
| !! | CTTCTTGTTTATACATTAAC+AGG | + | chr7.2:23372117-23372136 | MS.gene73383:intron | 25.0% |
| !! | CTTTTCACCTTTTTATTATC+TGG | + | chr7.2:23369352-23369371 | MS.gene73383:intron | 25.0% |
| !!! | CTTTTTCACTACTATTTGAA+TGG | + | chr7.2:23372217-23372236 | MS.gene73383:CDS | 25.0% |
| !!! | TTGTTTTAGGCTTTTCATAA+GGG | + | chr7.2:23369445-23369464 | MS.gene73383:intron | 25.0% |
| !!! | TTTGGTATAATGGGTATATT+TGG | + | chr7.2:23369631-23369650 | MS.gene73383:intron | 25.0% |
| !!! | TTTGTTTTAGGCTTTTCATA+AGG | + | chr7.2:23369444-23369463 | MS.gene73383:intron | 25.0% |
| AAAAATGCTTGTGTAAACTC+GGG | + | chr7.2:23371623-23371642 | MS.gene73383:intron | 30.0% | |
| AACAAAGATAGATAAGACGA+AGG | - | chr7.2:23370873-23370892 | None:intergenic | 30.0% | |
| AGACTGTCTATTAAAGCTTA+TGG | + | chr7.2:23369681-23369700 | MS.gene73383:intron | 30.0% | |
| AGGTGAAAAGATGAAAGATT+TGG | - | chr7.2:23369342-23369361 | None:intergenic | 30.0% | |
| AGTCATCGTATGAAAACATA+GGG | - | chr7.2:23371586-23371605 | None:intergenic | 30.0% | |
| ATAGATAAGACGAAGGAATA+AGG | - | chr7.2:23370866-23370885 | None:intergenic | 30.0% | |
| ATTTCTGTTTCGTCTTTGTT+GGG | - | chr7.2:23369153-23369172 | None:intergenic | 30.0% | |
| CAAAAATGCTTGTGTAAACT+CGG | + | chr7.2:23371622-23371641 | MS.gene73383:intron | 30.0% | |
| CAAAACTACTACAGATTGAA+GGG | - | chr7.2:23371779-23371798 | None:intergenic | 30.0% | |
| CCTATCAAACAAAATAACAG+GGG | - | chr7.2:23371220-23371239 | None:intergenic | 30.0% | |
| GCCTATCAAACAAAATAACA+GGG | - | chr7.2:23371221-23371240 | None:intergenic | 30.0% | |
| GCGAAATACTTCAATTATGT+TGG | + | chr7.2:23371985-23372004 | MS.gene73383:intron | 30.0% | |
| TACTACATCTCTTAGTAAAC+TGG | + | chr7.2:23371308-23371327 | MS.gene73383:intron | 30.0% | |
| TCAAAACTACTACAGATTGA+AGG | - | chr7.2:23371780-23371799 | None:intergenic | 30.0% | |
| TGTCTATTAAAGCTTATGGA+AGG | + | chr7.2:23369685-23369704 | MS.gene73383:intron | 30.0% | |
| TTAAATTGTATGTTTCCCCT+AGG | + | chr7.2:23370612-23370631 | MS.gene73383:intron | 30.0% | |
| TTTATTCGTACAAACTGACA+TGG | - | chr7.2:23370371-23370390 | None:intergenic | 30.0% | |
| TTTCATAAGGGTAAATGTGT+GGG | + | chr7.2:23369457-23369476 | MS.gene73383:CDS | 30.0% | |
| ! | AAACCAAAGTGAAACTCTTT+TGG | - | chr7.2:23371468-23371487 | None:intergenic | 30.0% |
| ! | GTCTTATCTATCTTTGTTGT+TGG | + | chr7.2:23370875-23370894 | MS.gene73383:intron | 30.0% |
| ! | TCTATTACAAGTTGACTTTC+CGG | + | chr7.2:23371054-23371073 | MS.gene73383:intron | 30.0% |
| ! | TTTTCATAAGGGTAAATGTG+TGG | + | chr7.2:23369456-23369475 | MS.gene73383:CDS | 30.0% |
| !! | TTACACTTAAAGCATTGTTC+CGG | + | chr7.2:23371151-23371170 | MS.gene73383:intron | 30.0% |
| !!! | AAAGCTTTTAGTTTTGGTGT+TGG | + | chr7.2:23370303-23370322 | MS.gene73383:intron | 30.0% |
| !!! | GTAGAGAAAGCTTTTAGTTT+TGG | + | chr7.2:23370297-23370316 | MS.gene73383:intron | 30.0% |
| AAAATCATTGCGGAACCAAT+TGG | + | chr7.2:23371423-23371442 | MS.gene73383:intron | 35.0% | |
| AAATAGTTAGAGGTAGAGAG+AGG | - | chr7.2:23370837-23370856 | None:intergenic | 35.0% | |
| ACATTGCATATAACCTTGAG+TGG | + | chr7.2:23371111-23371130 | MS.gene73383:intron | 35.0% | |
| AGAGTCAACGAGATACTAAT+GGG | - | chr7.2:23370962-23370981 | None:intergenic | 35.0% | |
| ATCTTTGCAATGAACTCAAC+AGG | + | chr7.2:23371662-23371681 | MS.gene73383:intron | 35.0% | |
| ATGCATCAACTTATCAGAGT+TGG | - | chr7.2:23371706-23371725 | None:intergenic | 35.0% | |
| CAAACCAAAATCTCAGAAAC+GGG | + | chr7.2:23370635-23370654 | MS.gene73383:intron | 35.0% | |
| CAGTCATCGTATGAAAACAT+AGG | - | chr7.2:23371587-23371606 | None:intergenic | 35.0% | |
| CGCCTATCAAACAAAATAAC+AGG | - | chr7.2:23371222-23371241 | None:intergenic | 35.0% | |
| CTTCCAAAAGAGTTTCACTT+TGG | + | chr7.2:23371462-23371481 | MS.gene73383:intron | 35.0% | |
| GAAGCAGAAGTCACAAATAA+AGG | + | chr7.2:23372148-23372167 | MS.gene73383:CDS | 35.0% | |
| GAGATTGAATACATCAGCTA+CGG | + | chr7.2:23369198-23369217 | MS.gene73383:CDS | 35.0% | |
| GATACAACTAGACATAGACA+TGG | - | chr7.2:23370254-23370273 | None:intergenic | 35.0% | |
| GATTATTGAGCAGATCCAAT+TGG | - | chr7.2:23371441-23371460 | None:intergenic | 35.0% | |
| GATTTCTGTTTCGTCTTTGT+TGG | - | chr7.2:23369154-23369173 | None:intergenic | 35.0% | |
| GCAAACCAAAATCTCAGAAA+CGG | + | chr7.2:23370634-23370653 | MS.gene73383:intron | 35.0% | |
| GTAGCTGATGTATTCAATCT+CGG | - | chr7.2:23369199-23369218 | None:intergenic | 35.0% | |
| TACAAACTGACATGGAACTA+TGG | - | chr7.2:23370363-23370382 | None:intergenic | 35.0% | |
| TACCATCACAACTCAATTGA+CGG | - | chr7.2:23371899-23371918 | None:intergenic | 35.0% | |
| TAGGTCTATCAAAGTGATGA+TGG | + | chr7.2:23370012-23370031 | MS.gene73383:CDS | 35.0% | |
| TGAAGCTAGATTAAGCTTTG+TGG | - | chr7.2:23371733-23371752 | None:intergenic | 35.0% | |
| TGAGTTGTGATGGTATGTTT+GGG | + | chr7.2:23371904-23371923 | MS.gene73383:intron | 35.0% | |
| TGCATCAACTTATCAGAGTT+GGG | - | chr7.2:23371705-23371724 | None:intergenic | 35.0% | |
| TGGAAGCTAGCACTTAAATA+AGG | - | chr7.2:23370343-23370362 | None:intergenic | 35.0% | |
| ! | TTGAGTTGTGATGGTATGTT+TGG | + | chr7.2:23371903-23371922 | MS.gene73383:intron | 35.0% |
| !! | ATCAAAGTGATGATGGAATC+TGG | + | chr7.2:23370019-23370038 | MS.gene73383:CDS | 35.0% |
| !! | TATTTTGTTTGATAGGCGCA+AGG | + | chr7.2:23371224-23371243 | MS.gene73383:intron | 35.0% |
| !! | TTTGTTGTTGGTGTTTCTGT+GGG | + | chr7.2:23370887-23370906 | MS.gene73383:intron | 35.0% |
| !!! | ACTGGCTTTTCATATAGTAC+TGG | + | chr7.2:23371326-23371345 | MS.gene73383:intron | 35.0% |
| !!! | ATTGAGAGTATTTTTCCACC+AGG | + | chr7.2:23370694-23370713 | MS.gene73383:intron | 35.0% |
| !!! | CCCCTGTTATTTTGTTTGAT+AGG | + | chr7.2:23371217-23371236 | MS.gene73383:intron | 35.0% |
| !!! | CTTTTAGTTTTGGTGTTGGT+TGG | + | chr7.2:23370307-23370326 | MS.gene73383:intron | 35.0% |
| ACTACAGATTGAAGGGTAGT+GGG | - | chr7.2:23371772-23371791 | None:intergenic | 40.0% | |
| AGACAAGATAGGATCAAGGA+CGG | - | chr7.2:23370998-23371017 | None:intergenic | 40.0% | |
| AGACCTACAGAGACAAACTT+TGG | - | chr7.2:23371384-23371403 | None:intergenic | 40.0% | |
| AGACCTAGTAACAAGTTCTG+TGG | - | chr7.2:23369999-23370018 | None:intergenic | 40.0% | |
| AGTTGTATCCCAATGTCATG+TGG | + | chr7.2:23370265-23370284 | MS.gene73383:intron | 40.0% | |
| ATACCTAGACCACATGACAT+TGG | - | chr7.2:23370277-23370296 | None:intergenic | 40.0% | |
| ATCGCTACTTCGTCTATCTA+TGG | + | chr7.2:23369295-23369314 | MS.gene73383:CDS | 40.0% | |
| ATGAACTCAACAGGTCAATG+AGG | + | chr7.2:23371671-23371690 | MS.gene73383:intron | 40.0% | |
| ATTGAATACATCAGCTACGG+CGG | + | chr7.2:23369201-23369220 | MS.gene73383:CDS | 40.0% | |
| CACAAGACAAGATAGGATCA+AGG | - | chr7.2:23371002-23371021 | None:intergenic | 40.0% | |
| CTAGACTCACCGGATAAATA+CGG | + | chr7.2:23372295-23372314 | MS.gene73383:CDS | 40.0% | |
| CTTCCAAAGTTTGTCTCTGT+AGG | + | chr7.2:23371378-23371397 | MS.gene73383:intron | 40.0% | |
| GAGAGTCAACGAGATACTAA+TGG | - | chr7.2:23370963-23370982 | None:intergenic | 40.0% | |
| GATTCATGCAGGTGATAAAC+CGG | - | chr7.2:23371173-23371192 | None:intergenic | 40.0% | |
| GGAACACTGCATGTTTGAAA+AGG | - | chr7.2:23370810-23370829 | None:intergenic | 40.0% | |
| GGTACCAGAAAAGAAAGATG+AGG | - | chr7.2:23369321-23369340 | None:intergenic | 40.0% | |
| GGTATGTTTGGGTACTAGTT+TGG | + | chr7.2:23371915-23371934 | MS.gene73383:intron | 40.0% | |
| GTACAAACTGACATTGAAGC+AGG | - | chr7.2:23370661-23370680 | None:intergenic | 40.0% | |
| GTTGTTATCAAACCCTACAG+AGG | + | chr7.2:23369541-23369560 | MS.gene73383:CDS | 40.0% | |
| TAAAGAGTGATGCAAACCCT+AGG | - | chr7.2:23371195-23371214 | None:intergenic | 40.0% | |
| TACCTAGACCACATGACATT+GGG | - | chr7.2:23370276-23370295 | None:intergenic | 40.0% | |
| TACTACAGATTGAAGGGTAG+TGG | - | chr7.2:23371773-23371792 | None:intergenic | 40.0% | |
| TAGACTCACCGGATAAATAC+GGG | + | chr7.2:23372296-23372315 | MS.gene73383:CDS | 40.0% | |
| TAGATAGACGAAGTAGCGAT+AGG | - | chr7.2:23369295-23369314 | None:intergenic | 40.0% | |
| TATCACCTGCATGAATCCTA+GGG | + | chr7.2:23371176-23371195 | MS.gene73383:intron | 40.0% | |
| TATTAGACGCGGTTCAAGAT+GGG | - | chr7.2:23370766-23370785 | None:intergenic | 40.0% | |
| TATTTATCCGGTGAGTCTAG+AGG | - | chr7.2:23372295-23372314 | None:intergenic | 40.0% | |
| TCATTGAAAAGGACCACTCA+AGG | - | chr7.2:23371127-23371146 | None:intergenic | 40.0% | |
| TTATCACCTGCATGAATCCT+AGG | + | chr7.2:23371175-23371194 | MS.gene73383:intron | 40.0% | |
| TTATTAGACGCGGTTCAAGA+TGG | - | chr7.2:23370767-23370786 | None:intergenic | 40.0% | |
| ! | AGCTTAATCTAGCTTCAACG+AGG | + | chr7.2:23371736-23371755 | MS.gene73383:intron | 40.0% |
| ! | ATGGCCTCATCTTTCTTTTC+TGG | + | chr7.2:23369314-23369333 | MS.gene73383:CDS | 40.0% |
| ! | CTTAATCTAGCTTCAACGAG+GGG | + | chr7.2:23371738-23371757 | MS.gene73383:intron | 40.0% |
| ! | GAACATCGTAGCACTTTTAG+AGG | + | chr7.2:23369502-23369521 | MS.gene73383:CDS | 40.0% |
| ! | GCTTAATCTAGCTTCAACGA+GGG | + | chr7.2:23371737-23371756 | MS.gene73383:intron | 40.0% |
| ! | GGTACTAGTTTGGTTTAGTC+TGG | + | chr7.2:23371925-23371944 | MS.gene73383:intron | 40.0% |
| !! | AGAGTATTTTTCCACCAGGT+GGG | + | chr7.2:23370401-23370420 | MS.gene73383:intron | 40.0% |
| !! | CTTTGTTGTTGGTGTTTCTG+TGG | + | chr7.2:23370886-23370905 | MS.gene73383:intron | 40.0% |
| !! | TTGGCTTTATTAGGGCTAAG+CGG | + | chr7.2:23372194-23372213 | MS.gene73383:CDS | 40.0% |
| !!! | AGTGAGAGTATTTTTCCACC+AGG | + | chr7.2:23370397-23370416 | MS.gene73383:intron | 40.0% |
| !!! | CTGAGATTTTGGTTTGCCTA+GGG | - | chr7.2:23370631-23370650 | None:intergenic | 40.0% |
| !!! | TCTGAGATTTTGGTTTGCCT+AGG | - | chr7.2:23370632-23370651 | None:intergenic | 40.0% |
| !!! | TGAGATTTTGGTTTGCCTAG+GGG | - | chr7.2:23370630-23370649 | None:intergenic | 40.0% |
| ATCAAACCCTACAGAGGAAG+AGG | + | chr7.2:23369547-23369566 | MS.gene73383:CDS | 45.0% | |
| ATCCCAATGTCATGTGGTCT+AGG | + | chr7.2:23370271-23370290 | MS.gene73383:intron | 45.0% | |
| ATCTCATAACTAACCCCACC+TGG | - | chr7.2:23370418-23370437 | None:intergenic | 45.0% | |
| ATGTGGCTCCCGTATTTATC+CGG | - | chr7.2:23372307-23372326 | None:intergenic | 45.0% | |
| CAAGGTTCATGATGAGAGGT+AGG | - | chr7.2:23369236-23369255 | None:intergenic | 45.0% | |
| CGATAGGTGAAGATGGAGTA+AGG | - | chr7.2:23369279-23369298 | None:intergenic | 45.0% | |
| GAAGTAGCGATAGGTGAAGA+TGG | - | chr7.2:23369286-23369305 | None:intergenic | 45.0% | |
| GCTTAGCCCTAATAAAGCCA+AGG | - | chr7.2:23372195-23372214 | None:intergenic | 45.0% | |
| GTGGTCACACAAGACAAGAT+AGG | - | chr7.2:23371009-23371028 | None:intergenic | 45.0% | |
| TAAGGGTAAATGTGTGGGCA+CGG | + | chr7.2:23369462-23369481 | MS.gene73383:CDS | 45.0% | |
| TAGCCCTAATAAAGCCAAGG+CGG | - | chr7.2:23372192-23372211 | None:intergenic | 45.0% | |
| TCGACAAGGTTCATGATGAG+AGG | - | chr7.2:23369240-23369259 | None:intergenic | 45.0% | |
| TTAGAGGTAGAGAGAGGTCA+AGG | - | chr7.2:23370831-23370850 | None:intergenic | 45.0% | |
| ! | CACGGTGGTTTGTAAAATGG+GGG | + | chr7.2:23369480-23369499 | MS.gene73383:CDS | 45.0% |
| ! | GACCGTCAATTGAGTTGTGA+TGG | + | chr7.2:23371894-23371913 | MS.gene73383:intron | 45.0% |
| ! | GAGTATTTTTCCACCAGGTG+GGG | + | chr7.2:23370402-23370421 | MS.gene73383:intron | 45.0% |
| ! | GCACGGTGGTTTGTAAAATG+GGG | + | chr7.2:23369479-23369498 | MS.gene73383:CDS | 45.0% |
| ! | GGCACGGTGGTTTGTAAAAT+GGG | + | chr7.2:23369478-23369497 | MS.gene73383:CDS | 45.0% |
| ! | TACAAGTTGACTTTCCGGTC+AGG | + | chr7.2:23371059-23371078 | MS.gene73383:intron | 45.0% |
| !! | AAAGGAGCACTTGCTCTGTA+TGG | + | chr7.2:23372166-23372185 | MS.gene73383:CDS | 45.0% |
| !! | AGATTGAAGGGTAGTGGGAT+TGG | - | chr7.2:23371767-23371786 | None:intergenic | 45.0% |
| !! | CAGCCACAGAACTTGTTACT+AGG | + | chr7.2:23369993-23370012 | MS.gene73383:intron | 45.0% |
| !! | GATTGAAGGGTAGTGGGATT+GGG | - | chr7.2:23371766-23371785 | None:intergenic | 45.0% |
| !!! | GAGAGTATTTTTCCACCAGG+TGG | + | chr7.2:23370400-23370419 | MS.gene73383:intron | 45.0% |
| ACCAATGCCTCTTCCTCTGT+AGG | - | chr7.2:23369557-23369576 | None:intergenic | 50.0% | |
| AGCCACATGCATAGTGATCG+TGG | + | chr7.2:23372319-23372338 | MS.gene73383:CDS | 50.0% | |
| CCAATGCCTCTTCCTCTGTA+GGG | - | chr7.2:23369556-23369575 | None:intergenic | 50.0% | |
| GATGGAATCTGGTTGTGACG+AGG | + | chr7.2:23370030-23370049 | MS.gene73383:CDS | 50.0% | |
| GCAAACCCTAGGATTCATGC+AGG | - | chr7.2:23371184-23371203 | None:intergenic | 50.0% | |
| TCATAACTAACCCCACCTGG+TGG | - | chr7.2:23370415-23370434 | None:intergenic | 50.0% | |
| ! | GGGCACGGTGGTTTGTAAAA+TGG | + | chr7.2:23369477-23369496 | MS.gene73383:CDS | 50.0% |
| !! | ATGGCCGCCTTGGCTTTATT+AGG | + | chr7.2:23372185-23372204 | MS.gene73383:CDS | 50.0% |
| !! | TGGCCGCCTTGGCTTTATTA+GGG | + | chr7.2:23372186-23372205 | MS.gene73383:CDS | 50.0% |
| !!! | CAGGCCCGTTTCTGAGATTT+TGG | - | chr7.2:23370642-23370661 | None:intergenic | 50.0% |
| CAGGGCAGAAAAAGCCTGAC+CGG | - | chr7.2:23371076-23371095 | None:intergenic | 55.0% | |
| CGCCACGATCACTATGCATG+TGG | - | chr7.2:23372324-23372343 | None:intergenic | 55.0% | |
| CGCTGAGTTCTTCGTCGACA+AGG | - | chr7.2:23369254-23369273 | None:intergenic | 55.0% | |
| ! | CCCTACAGAGGAAGAGGCAT+TGG | + | chr7.2:23369553-23369572 | MS.gene73383:CDS | 55.0% |
| ! | TCTAGAGGTGCGTGCAAGTC+TGG | - | chr7.2:23372280-23372299 | None:intergenic | 55.0% |
| CTTGCTCTGTATGGCCGCCT+TGG | + | chr7.2:23372175-23372194 | MS.gene73383:CDS | 60.0% | |
| GCACGCACCTCTAGACTCAC+CGG | + | chr7.2:23372285-23372304 | MS.gene73383:CDS | 60.0% | |
| GGGTAAATGTGTGGGCACGG+TGG | + | chr7.2:23369465-23369484 | MS.gene73383:CDS | 60.0% | |
| GGTGCGTGCAAGTCTGGACG+AGG | - | chr7.2:23372274-23372293 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 23369141 | 23372363 | 23369141 | ID=MS.gene73383 |
| chr7.2 | mRNA | 23369141 | 23372363 | 23369141 | ID=MS.gene73383.t1;Parent=MS.gene73383 |
| chr7.2 | exon | 23369141 | 23369335 | 23369141 | ID=MS.gene73383.t1.exon1;Parent=MS.gene73383.t1 |
| chr7.2 | CDS | 23369141 | 23369335 | 23369141 | ID=cds.MS.gene73383.t1;Parent=MS.gene73383.t1 |
| chr7.2 | exon | 23369454 | 23369574 | 23369454 | ID=MS.gene73383.t1.exon2;Parent=MS.gene73383.t1 |
| chr7.2 | CDS | 23369454 | 23369574 | 23369454 | ID=cds.MS.gene73383.t1;Parent=MS.gene73383.t1 |
| chr7.2 | exon | 23369996 | 23370051 | 23369996 | ID=MS.gene73383.t1.exon3;Parent=MS.gene73383.t1 |
| chr7.2 | CDS | 23369996 | 23370051 | 23369996 | ID=cds.MS.gene73383.t1;Parent=MS.gene73383.t1 |
| chr7.2 | exon | 23372139 | 23372363 | 23372139 | ID=MS.gene73383.t1.exon4;Parent=MS.gene73383.t1 |
| chr7.2 | CDS | 23372139 | 23372363 | 23372139 | ID=cds.MS.gene73383.t1;Parent=MS.gene73383.t1 |
| Gene Sequence |
| Protein sequence |
