Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74183.t1 | XP_003596089.2 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 1.80E-219 | 771.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74183.t1 | G7IQY1 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 1.3e-219 | 771.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049805 | MS.gene74183 | 0.800307 | 1.53E-48 | -1.69E-46 |
| MS.gene050593 | MS.gene74183 | 0.809533 | 1.81E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene74183 | 0.822018 | 2.96E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene74183 | 0.810452 | 1.14E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene74183 | 0.8521 | 5.76E-61 | -1.69E-46 |
| MS.gene053579 | MS.gene74183 | 0.812181 | 4.82E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene74183 | 0.818336 | 2.07E-52 | -1.69E-46 |
| MS.gene055224 | MS.gene74183 | 0.803676 | 3.11E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene74183 | 0.821014 | 5.06E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene74183 | 0.807448 | 5.03E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene74183 | 0.824719 | 6.93E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74183.t1 | MTR_2g066060 | 97.704 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 0.0 | 789 |
| MS.gene74183.t1 | MTR_2g066060 | 97.059 | 272 | 8 | 0 | 1 | 272 | 1 | 272 | 0.0 | 546 |
| MS.gene74183.t1 | MTR_7g114070 | 32.927 | 164 | 106 | 2 | 227 | 388 | 174 | 335 | 1.40e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74183.t1 | AT1G56180 | 69.251 | 387 | 94 | 6 | 19 | 392 | 15 | 389 | 0.0 | 535 |
| MS.gene74183.t1 | AT1G56180 | 64.164 | 293 | 80 | 6 | 19 | 298 | 15 | 295 | 1.55e-128 | 372 |
| MS.gene74183.t1 | AT5G27290 | 31.953 | 169 | 103 | 3 | 226 | 388 | 174 | 336 | 8.71e-22 | 95.9 |
| MS.gene74183.t1 | AT2G21960 | 34.337 | 166 | 100 | 1 | 220 | 385 | 173 | 329 | 1.62e-18 | 86.3 |
Find 125 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCTGAGGCTCTTATTTA+TGG | 0.164924 | 2.2:-24687697 | MS.gene74183:CDS |
| CCCATTTGCATTGCAACTAT+TGG | 0.199577 | 2.2:+24689715 | None:intergenic |
| TTTAGGCAGGGACTCAGTTT+TGG | 0.224980 | 2.2:-24689238 | MS.gene74183:intron |
| TTTGGTAAATGCAGAAATAT+TGG | 0.236327 | 2.2:-24693943 | MS.gene74183:intron |
| TGAGAAAATGAGGGAAAATT+TGG | 0.256595 | 2.2:+24694319 | None:intergenic |
| TTTCTGCATTTACCAAAATT+AGG | 0.271528 | 2.2:+24693949 | None:intergenic |
| TCCGAGAGACCCCACTTCTT+TGG | 0.282916 | 2.2:+24690095 | None:intergenic |
| TAAAATTTCAGCTTACCTAA+TGG | 0.314470 | 2.2:-24689767 | MS.gene74183:intron |
| GCAGTCTGAGTGCGGTAATT+AGG | 0.319305 | 2.2:-24687391 | MS.gene74183:CDS |
| AAAATTTCAGCTTACCTAAT+GGG | 0.320619 | 2.2:-24689766 | MS.gene74183:intron |
| CTTTGCAGATTCTATATTCC+TGG | 0.328033 | 2.2:-24689970 | MS.gene74183:CDS |
| GAAGCAGGACATCTCTTAAT+AGG | 0.332947 | 2.2:-24689882 | MS.gene74183:intron |
| CTTGAGCTCCGCAACTGGTT+TGG | 0.348418 | 2.2:-24690295 | MS.gene74183:CDS |
| TAGCTCAAATATCAAGTTAC+TGG | 0.359297 | 2.2:-24689935 | MS.gene74183:CDS |
| TCTAGAATCACCCCTCGAAT+TGG | 0.364635 | 2.2:+24689739 | None:intergenic |
| CCCAACCTTGCAGTGATATT+AGG | 0.375300 | 2.2:-24689999 | MS.gene74183:CDS |
| TCCAATAGTTGCAATGCAAA+TGG | 0.383334 | 2.2:-24689716 | MS.gene74183:CDS |
| CTCCGGTGGCCGAGTTGACT+CGG | 0.402301 | 2.2:-24694101 | MS.gene74183:CDS |
| TGTTCGGTCCGCAGAGGGAT+TGG | 0.409605 | 2.2:-24694056 | MS.gene74183:CDS |
| GAATGCTTATAAGTTTCTTA+AGG | 0.416498 | 2.2:-24693986 | MS.gene74183:CDS |
| CTCGAATTGGGCATCCCATT+AGG | 0.420824 | 2.2:+24689752 | None:intergenic |
| TTCTGCAGTTACGCGTTGTT+CGG | 0.425988 | 2.2:+24694143 | None:intergenic |
| CAAGTTACTGGCCACCATAT+AGG | 0.432077 | 2.2:-24689923 | MS.gene74183:CDS |
| CTTGCTGAAGGCCGACTAGA+TGG | 0.432462 | 2.2:-24689194 | MS.gene74183:CDS |
| ATGAGGATTCGACGCCTATA+TGG | 0.434298 | 2.2:+24689909 | None:intergenic |
| GTAGTCGCGCCATTCTTTGA+AGG | 0.435589 | 2.2:+24694227 | None:intergenic |
| GTTCGGTCCGCAGAGGGATT+GGG | 0.438088 | 2.2:-24694055 | MS.gene74183:CDS |
| CCTAATATCACTGCAAGGTT+GGG | 0.439815 | 2.2:+24689999 | None:intergenic |
| CTAGAATCACCCCTCGAATT+GGG | 0.443121 | 2.2:+24689740 | None:intergenic |
| TATAAGTTTCTTAAGGATAG+GGG | 0.445138 | 2.2:-24693979 | MS.gene74183:CDS |
| TTATAAGTTTCTTAAGGATA+GGG | 0.447210 | 2.2:-24693980 | MS.gene74183:CDS |
| GGAGAACCTCCGTCAGTAAA+CGG | 0.451073 | 2.2:+24694120 | None:intergenic |
| GATGTCTTGAGCTCCGCAAC+TGG | 0.452532 | 2.2:-24690300 | MS.gene74183:CDS |
| CTTATAAGTTTCTTAAGGAT+AGG | 0.452608 | 2.2:-24693981 | MS.gene74183:CDS |
| GTTGCGGAGCTCAAGACATC+TGG | 0.464021 | 2.2:+24690303 | None:intergenic |
| TGAGGGGAGGTGAGAAAATG+AGG | 0.469297 | 2.2:+24694309 | None:intergenic |
| CACTCACCGCCTTCAAAGAA+TGG | 0.473473 | 2.2:-24694236 | MS.gene74183:CDS |
| TTACGCGTTGTTCGGTTTCG+AGG | 0.476415 | 2.2:+24694151 | None:intergenic |
| AATCTTATAATTTGCTCAAG+TGG | 0.477761 | 2.2:-24687460 | MS.gene74183:CDS |
| GGAAAGTGCGGGAAAATTGA+GGG | 0.478116 | 2.2:+24694292 | None:intergenic |
| ACTTGATATTTGAGCTAGAC+AGG | 0.483314 | 2.2:+24689941 | None:intergenic |
| GGGAAAATTTGGAGGTGAAA+GGG | 0.487539 | 2.2:+24694330 | None:intergenic |
| TCCAAAGAAGTGGGGTCTCT+CGG | 0.487788 | 2.2:-24690096 | MS.gene74183:CDS |
| TGGCCGAGTTGACTCGGACT+CGG | 0.489152 | 2.2:-24694095 | MS.gene74183:CDS |
| CCAATAGTTGCAATGCAAAT+GGG | 0.492043 | 2.2:-24689715 | MS.gene74183:CDS |
| ACCTAATATCACTGCAAGGT+TGG | 0.492993 | 2.2:+24689998 | None:intergenic |
| CTAAACTTGCTCCAAAGAAG+TGG | 0.499524 | 2.2:-24690106 | MS.gene74183:CDS |
| GGGAAAGTGCGGGAAAATTG+AGG | 0.503706 | 2.2:+24694291 | None:intergenic |
| CGAATCCTCATTCATGAAGC+AGG | 0.506827 | 2.2:-24689897 | MS.gene74183:CDS |
| CTTATTTATGGTGAGGCAGA+GGG | 0.507075 | 2.2:-24687685 | MS.gene74183:CDS |
| AGCTCCGCAACTGGTTTGGA+AGG | 0.510365 | 2.2:-24690291 | MS.gene74183:intron |
| ACATCTGGTGTTACATTCCT+CGG | 0.513237 | 2.2:+24690318 | None:intergenic |
| GTCCGAGTCAACTCGGCCAC+CGG | 0.513752 | 2.2:+24694099 | None:intergenic |
| TACGCGTTGTTCGGTTTCGA+GGG | 0.514368 | 2.2:+24694152 | None:intergenic |
| AATTTGGAGGTGAAAGGGAG+AGG | 0.519668 | 2.2:+24694335 | None:intergenic |
| GTTTACTGACGGAGGTTCTC+CGG | 0.520526 | 2.2:-24694118 | MS.gene74183:CDS |
| TCGGACTCGGTTCCGCGAGT+TGG | 0.520608 | 2.2:-24694082 | MS.gene74183:CDS |
| TAATGGGATGCCCAATTCGA+GGG | 0.521844 | 2.2:-24689750 | MS.gene74183:CDS |
| TTTGCAGATTCTATATTCCT+GGG | 0.522149 | 2.2:-24689969 | MS.gene74183:CDS |
| TTTCACAAGGAATAGACCTC+AGG | 0.525323 | 2.2:-24690022 | MS.gene74183:CDS |
| GCCTCCATTGTCTGTAGCAG+AGG | 0.526930 | 2.2:-24687614 | MS.gene74183:intron |
| CGGAGAGGTTTGCGTGTCAC+CGG | 0.526945 | 2.2:+24694267 | None:intergenic |
| TCGGCCTTCAGCAAGGTCGC+TGG | 0.528447 | 2.2:+24689202 | None:intergenic |
| CCGAGCTGCTGTTAAAGCAT+TGG | 0.528568 | 2.2:-24687423 | MS.gene74183:CDS |
| AGGGAAAATTTGGAGGTGAA+AGG | 0.531812 | 2.2:+24694329 | None:intergenic |
| TTCCGCGAGTTGGAGATGTT+CGG | 0.537060 | 2.2:-24694072 | MS.gene74183:CDS |
| TCTTATTTATGGTGAGGCAG+AGG | 0.537919 | 2.2:-24687686 | MS.gene74183:CDS |
| TCAATGGTTTAGGTACTGTA+TGG | 0.538238 | 2.2:-24687737 | MS.gene74183:intron |
| TATTCCTTGTGAAATAAGAA+AGG | 0.544423 | 2.2:+24690031 | None:intergenic |
| CTTTGAAGGCGGTGAGTGGT+CGG | 0.546232 | 2.2:+24694241 | None:intergenic |
| GATGTCCTGCTTCATGAATG+AGG | 0.549091 | 2.2:+24689892 | None:intergenic |
| GAAAATGAGGGAAAATTTGG+AGG | 0.560611 | 2.2:+24694322 | None:intergenic |
| TGCACCTTCCAAACCAGTTG+CGG | 0.562851 | 2.2:+24690287 | None:intergenic |
| CTAATGGGATGCCCAATTCG+AGG | 0.563298 | 2.2:-24689751 | MS.gene74183:CDS |
| GGAGATGTTCGGTCCGCAGA+GGG | 0.565156 | 2.2:-24694061 | MS.gene74183:CDS |
| GCAAATGGGTATCCAAGGAC+AGG | 0.566483 | 2.2:-24689701 | MS.gene74183:intron |
| GTGTCCTTTCTTATTTCACA+AGG | 0.567590 | 2.2:-24690035 | MS.gene74183:CDS |
| TAAACTTGCTCCAAAGAAGT+GGG | 0.569605 | 2.2:-24690105 | MS.gene74183:CDS |
| AGGCGGTGAGTGGTCGGAGA+CGG | 0.571801 | 2.2:+24694247 | None:intergenic |
| AAGACCTCTGCTACAGACAA+TGG | 0.575943 | 2.2:+24687610 | None:intergenic |
| AAGAAGTGGGGTCTCTCGGA+TGG | 0.580486 | 2.2:-24690092 | MS.gene74183:CDS |
| CCAATGCTTTAACAGCAGCT+CGG | 0.580868 | 2.2:+24687423 | None:intergenic |
| CATTCTTTGAAGGCGGTGAG+TGG | 0.582217 | 2.2:+24694237 | None:intergenic |
| GTCTGAGTGCGGTAATTAGG+AGG | 0.584201 | 2.2:-24687388 | MS.gene74183:CDS |
| GCAATGCAAATGGGTATCCA+AGG | 0.590300 | 2.2:-24689706 | MS.gene74183:CDS |
| TCACTGCAAGGTTGGGCCTG+AGG | 0.590759 | 2.2:+24690006 | None:intergenic |
| GAGCTAGACAGGTACCTCCC+AGG | 0.591504 | 2.2:+24689952 | None:intergenic |
| GAACCGAGTCCGAGTCAACT+CGG | 0.596001 | 2.2:+24694092 | None:intergenic |
| AGAGGTTTGCGTGTCACCGG+AGG | 0.596089 | 2.2:+24694270 | None:intergenic |
| ATAAGTTTCTTAAGGATAGG+GGG | 0.598121 | 2.2:-24693978 | MS.gene74183:CDS |
| TGAGGCTCTTATTTATGGTG+AGG | 0.600518 | 2.2:-24687692 | MS.gene74183:CDS |
| GAGGGGAGGTGAGAAAATGA+GGG | 0.601856 | 2.2:+24694310 | None:intergenic |
| GTGTCACCGGAGGGAAAGTG+CGG | 0.603430 | 2.2:+24694280 | None:intergenic |
| AGATGTCTAATCAAGCAAGA+TGG | 0.606406 | 2.2:-24687493 | MS.gene74183:CDS |
| TGTCACCGGAGGGAAAGTGC+GGG | 0.614609 | 2.2:+24694281 | None:intergenic |
| GTCTAATCAAGCAAGATGGT+CGG | 0.616317 | 2.2:-24687489 | MS.gene74183:CDS |
| GTGAAAGGGAGAGGAAGACA+TGG | 0.616317 | 2.2:+24694344 | None:intergenic |
| GAGGTTTGCGTGTCACCGGA+GGG | 0.619866 | 2.2:+24694271 | None:intergenic |
| GTCGCGCCATTCTTTGAAGG+CGG | 0.621068 | 2.2:+24694230 | None:intergenic |
| GTTGCCAGCGACCTTGCTGA+AGG | 0.623473 | 2.2:-24689206 | MS.gene74183:CDS |
| ATTTATGGTGAGGCAGAGGG+TGG | 0.624370 | 2.2:-24687682 | MS.gene74183:CDS |
| CATCTAGTCGGCCTTCAGCA+AGG | 0.633811 | 2.2:+24689195 | None:intergenic |
| CAGGAATATAGAATCTGCAA+AGG | 0.635173 | 2.2:+24689971 | None:intergenic |
| AGGATTCGACGCCTATATGG+TGG | 0.636942 | 2.2:+24689912 | None:intergenic |
| GCTGTTAAAGCATTGGAAAG+TGG | 0.642904 | 2.2:-24687416 | MS.gene74183:CDS |
| CAAAAGCTGAACCATCTAGT+CGG | 0.651547 | 2.2:+24689183 | None:intergenic |
| GTAAAACGCAAAGACCTCGC+CGG | 0.654740 | 2.2:-24694195 | MS.gene74183:CDS |
| GACCGAACATCTCCAACTCG+CGG | 0.656076 | 2.2:+24694070 | None:intergenic |
| GTGAGTGGTCGGAGACGGAG+AGG | 0.659853 | 2.2:+24694252 | None:intergenic |
| CTAGACCTAATATCACTGCA+AGG | 0.666706 | 2.2:+24689994 | None:intergenic |
| TGGAGATGTTCGGTCCGCAG+AGG | 0.666720 | 2.2:-24694062 | MS.gene74183:CDS |
| TGCGGTAATTAGGAGGATCG+AGG | 0.668565 | 2.2:-24687381 | MS.gene74183:CDS |
| GCAGAACCGTTTACTGACGG+AGG | 0.669090 | 2.2:-24694126 | MS.gene74183:CDS |
| ACCTCTGCTACAGACAATGG+AGG | 0.669231 | 2.2:+24687613 | None:intergenic |
| AATGGGATGCCCAATTCGAG+GGG | 0.670159 | 2.2:-24689749 | MS.gene74183:CDS |
| GCAGATTCTATATTCCTGGG+AGG | 0.678010 | 2.2:-24689966 | MS.gene74183:CDS |
| AGTGCGGGAAAATTGAGGGG+AGG | 0.682404 | 2.2:+24694296 | None:intergenic |
| TACTGACGGAGGTTCTCCGG+TGG | 0.685988 | 2.2:-24694115 | MS.gene74183:CDS |
| ACTGCAGAACCGTTTACTGA+CGG | 0.687216 | 2.2:-24694129 | MS.gene74183:CDS |
| GAAAGTGCGGGAAAATTGAG+GGG | 0.691833 | 2.2:+24694293 | None:intergenic |
| AAACTTGCTCCAAAGAAGTG+GGG | 0.696869 | 2.2:-24690104 | MS.gene74183:CDS |
| AGAACTTCCCAATCCCTCTG+CGG | 0.699994 | 2.2:+24694048 | None:intergenic |
| GTTAAAGCATTGGAAAGTGG+TGG | 0.709004 | 2.2:-24687413 | MS.gene74183:CDS |
| GGAAACTGAGAGCTCCGGCG+AGG | 0.709664 | 2.2:+24694181 | None:intergenic |
| AAGTGGTGGCAGTCTGAGTG+CGG | 0.737711 | 2.2:-24687399 | MS.gene74183:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 24687358 | 24694370 | 24687358 | ID=MS.gene74183 |
| chr2.2 | mRNA | 24687358 | 24694370 | 24687358 | ID=MS.gene74183.t1;Parent=MS.gene74183 |
| chr2.2 | exon | 24693944 | 24694370 | 24693944 | ID=MS.gene74183.t1.exon1;Parent=MS.gene74183.t1 |
| chr2.2 | CDS | 24693944 | 24694370 | 24693944 | ID=cds.MS.gene74183.t1;Parent=MS.gene74183.t1 |
| chr2.2 | exon | 24690292 | 24690351 | 24690292 | ID=MS.gene74183.t1.exon2;Parent=MS.gene74183.t1 |
| chr2.2 | CDS | 24690292 | 24690351 | 24690292 | ID=cds.MS.gene74183.t1;Parent=MS.gene74183.t1 |
| chr2.2 | exon | 24689883 | 24690131 | 24689883 | ID=MS.gene74183.t1.exon3;Parent=MS.gene74183.t1 |
| chr2.2 | CDS | 24689883 | 24690131 | 24689883 | ID=cds.MS.gene74183.t1;Parent=MS.gene74183.t1 |
| chr2.2 | exon | 24689702 | 24689778 | 24689702 | ID=MS.gene74183.t1.exon4;Parent=MS.gene74183.t1 |
| chr2.2 | CDS | 24689702 | 24689778 | 24689702 | ID=cds.MS.gene74183.t1;Parent=MS.gene74183.t1 |
| chr2.2 | exon | 24689179 | 24689255 | 24689179 | ID=MS.gene74183.t1.exon5;Parent=MS.gene74183.t1 |
| chr2.2 | CDS | 24689179 | 24689255 | 24689179 | ID=cds.MS.gene74183.t1;Parent=MS.gene74183.t1 |
| chr2.2 | exon | 24687615 | 24687747 | 24687615 | ID=MS.gene74183.t1.exon6;Parent=MS.gene74183.t1 |
| chr2.2 | CDS | 24687615 | 24687747 | 24687615 | ID=cds.MS.gene74183.t1;Parent=MS.gene74183.t1 |
| chr2.2 | exon | 24687358 | 24687513 | 24687358 | ID=MS.gene74183.t1.exon7;Parent=MS.gene74183.t1 |
| chr2.2 | CDS | 24687358 | 24687513 | 24687358 | ID=cds.MS.gene74183.t1;Parent=MS.gene74183.t1 |
| Gene Sequence |
| Protein sequence |