Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74396.t1 | XP_024641127.1 | 97.1 | 339 | 9 | 1 | 1 | 338 | 1 | 339 | 1.90E-196 | 694.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74396.t1 | Q945S8 | 62.5 | 363 | 109 | 8 | 1 | 336 | 1 | 363 | 8.9e-123 | 441.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74396.t1 | G7KMG0 | 97.1 | 339 | 9 | 1 | 1 | 338 | 1 | 339 | 1.3e-196 | 694.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene74396.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene40494 | MS.gene74396 | PPI |
MS.gene024821 | MS.gene74396 | PPI |
MS.gene21793 | MS.gene74396 | PPI |
MS.gene058069 | MS.gene74396 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74396.t1 | MTR_6g059310 | 97.050 | 339 | 9 | 1 | 1 | 338 | 1 | 339 | 0.0 | 687 |
MS.gene74396.t1 | MTR_6g059310 | 94.269 | 349 | 9 | 2 | 1 | 338 | 1 | 349 | 0.0 | 677 |
MS.gene74396.t1 | MTR_0071s0100 | 50.442 | 226 | 105 | 3 | 28 | 252 | 132 | 351 | 2.27e-73 | 232 |
MS.gene74396.t1 | MTR_1g098000 | 43.500 | 200 | 109 | 3 | 57 | 252 | 38 | 237 | 4.47e-43 | 155 |
MS.gene74396.t1 | MTR_1g098370 | 43.000 | 200 | 110 | 3 | 57 | 252 | 41 | 240 | 1.48e-42 | 154 |
MS.gene74396.t1 | MTR_3g088625 | 39.301 | 229 | 132 | 6 | 28 | 251 | 1134 | 1360 | 6.28e-41 | 153 |
MS.gene74396.t1 | MTR_3g088625 | 39.301 | 229 | 132 | 6 | 28 | 251 | 1240 | 1466 | 6.76e-41 | 153 |
MS.gene74396.t1 | MTR_8g078490 | 35.714 | 182 | 101 | 3 | 84 | 249 | 1071 | 1252 | 1.11e-25 | 108 |
MS.gene74396.t1 | MTR_4g132610 | 34.615 | 182 | 103 | 3 | 84 | 249 | 865 | 1046 | 2.14e-25 | 107 |
MS.gene74396.t1 | MTR_8g078505 | 34.857 | 175 | 101 | 2 | 84 | 245 | 359 | 533 | 2.55e-25 | 106 |
MS.gene74396.t1 | MTR_5g018850 | 35.165 | 182 | 102 | 3 | 84 | 249 | 1325 | 1506 | 4.56e-25 | 106 |
MS.gene74396.t1 | MTR_7g021365 | 38.129 | 139 | 81 | 2 | 111 | 246 | 905 | 1041 | 3.30e-20 | 92.4 |
MS.gene74396.t1 | MTR_1g012910 | 34.483 | 145 | 89 | 2 | 111 | 249 | 363 | 507 | 1.78e-19 | 89.4 |
MS.gene74396.t1 | MTR_1g012910 | 34.483 | 145 | 89 | 2 | 111 | 249 | 526 | 670 | 2.13e-19 | 89.7 |
MS.gene74396.t1 | MTR_2g036060 | 34.848 | 132 | 86 | 0 | 111 | 242 | 1032 | 1163 | 8.49e-19 | 88.2 |
MS.gene74396.t1 | MTR_2g036060 | 34.848 | 132 | 86 | 0 | 111 | 242 | 1057 | 1188 | 8.85e-19 | 88.2 |
MS.gene74396.t1 | MTR_7g117355 | 38.776 | 147 | 75 | 4 | 115 | 247 | 816 | 961 | 1.20e-18 | 87.4 |
MS.gene74396.t1 | MTR_5g013420 | 30.303 | 198 | 104 | 6 | 86 | 249 | 891 | 1088 | 1.94e-18 | 87.0 |
MS.gene74396.t1 | MTR_1g012890 | 32.414 | 145 | 92 | 2 | 111 | 249 | 223 | 367 | 4.29e-18 | 84.7 |
MS.gene74396.t1 | MTR_5g013420 | 30.412 | 194 | 101 | 6 | 86 | 245 | 891 | 1084 | 5.06e-18 | 85.9 |
MS.gene74396.t1 | MTR_4g010830 | 29.798 | 198 | 105 | 6 | 86 | 249 | 782 | 979 | 5.73e-18 | 85.5 |
MS.gene74396.t1 | MTR_7g088370 | 29.348 | 184 | 106 | 5 | 86 | 246 | 519 | 701 | 1.40e-17 | 84.3 |
MS.gene74396.t1 | MTR_3g091310 | 37.692 | 130 | 76 | 3 | 122 | 247 | 932 | 1060 | 2.49e-17 | 83.6 |
MS.gene74396.t1 | MTR_3g091310 | 37.692 | 130 | 76 | 3 | 122 | 247 | 838 | 966 | 2.71e-17 | 83.6 |
MS.gene74396.t1 | MTR_3g011440 | 27.551 | 196 | 99 | 4 | 86 | 247 | 461 | 647 | 1.22e-15 | 78.2 |
MS.gene74396.t1 | MTR_1g008230 | 36.923 | 130 | 77 | 3 | 122 | 247 | 625 | 753 | 1.49e-15 | 78.2 |
MS.gene74396.t1 | MTR_1g008230 | 36.923 | 130 | 77 | 3 | 122 | 247 | 903 | 1031 | 1.60e-15 | 78.2 |
MS.gene74396.t1 | MTR_8g027725 | 35.385 | 130 | 79 | 3 | 122 | 247 | 818 | 946 | 2.80e-15 | 77.4 |
MS.gene74396.t1 | MTR_8g027725 | 35.385 | 130 | 79 | 3 | 122 | 247 | 803 | 931 | 2.94e-15 | 77.4 |
MS.gene74396.t1 | MTR_5g016870 | 33.077 | 130 | 85 | 2 | 100 | 229 | 703 | 830 | 9.65e-15 | 75.9 |
MS.gene74396.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 471 | 602 | 1.48e-14 | 75.1 |
MS.gene74396.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 661 | 792 | 2.00e-14 | 74.7 |
MS.gene74396.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 620 | 751 | 2.02e-14 | 74.7 |
MS.gene74396.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 599 | 730 | 2.03e-14 | 74.7 |
MS.gene74396.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 671 | 802 | 2.08e-14 | 74.7 |
MS.gene74396.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 651 | 782 | 2.41e-14 | 74.3 |
MS.gene74396.t1 | MTR_8g042750 | 27.094 | 203 | 110 | 5 | 86 | 250 | 486 | 688 | 2.51e-14 | 74.3 |
MS.gene74396.t1 | MTR_4g010550 | 29.032 | 186 | 106 | 7 | 86 | 249 | 282 | 463 | 2.89e-13 | 70.9 |
MS.gene74396.t1 | MTR_7g055660 | 33.058 | 121 | 79 | 2 | 111 | 231 | 582 | 700 | 3.41e-13 | 70.9 |
MS.gene74396.t1 | MTR_6g027690 | 26.667 | 210 | 119 | 8 | 66 | 255 | 228 | 422 | 6.58e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74396.t1 | AT2G44150 | 64.463 | 363 | 102 | 8 | 1 | 336 | 1 | 363 | 2.23e-145 | 415 |
MS.gene74396.t1 | AT3G59960 | 56.798 | 331 | 120 | 7 | 1 | 310 | 1 | 329 | 1.43e-106 | 315 |
MS.gene74396.t1 | AT3G59960 | 66.409 | 259 | 83 | 3 | 1 | 257 | 1 | 257 | 1.51e-104 | 308 |
MS.gene74396.t1 | AT3G59960 | 66.409 | 259 | 83 | 3 | 1 | 257 | 1 | 257 | 1.51e-104 | 308 |
MS.gene74396.t1 | AT3G59960 | 66.409 | 259 | 83 | 3 | 1 | 257 | 1 | 257 | 1.51e-104 | 308 |
MS.gene74396.t1 | AT4G30860 | 47.012 | 251 | 123 | 4 | 10 | 256 | 227 | 471 | 6.74e-73 | 234 |
MS.gene74396.t1 | AT1G76710 | 41.333 | 225 | 127 | 4 | 33 | 252 | 7 | 231 | 6.35e-45 | 160 |
MS.gene74396.t1 | AT1G76710 | 41.333 | 225 | 127 | 4 | 33 | 252 | 7 | 231 | 6.35e-45 | 160 |
MS.gene74396.t1 | AT1G76710 | 41.333 | 225 | 127 | 4 | 33 | 252 | 7 | 231 | 6.63e-45 | 160 |
MS.gene74396.t1 | AT1G76710 | 41.333 | 225 | 127 | 4 | 33 | 252 | 7 | 231 | 8.18e-45 | 160 |
MS.gene74396.t1 | AT1G77300 | 40.741 | 216 | 123 | 5 | 43 | 253 | 955 | 1170 | 9.04e-42 | 155 |
MS.gene74396.t1 | AT1G77300 | 40.741 | 216 | 123 | 5 | 43 | 253 | 955 | 1170 | 1.13e-41 | 155 |
MS.gene74396.t1 | AT2G23740 | 34.973 | 183 | 98 | 4 | 84 | 246 | 1197 | 1378 | 5.40e-23 | 100 |
MS.gene74396.t1 | AT2G23740 | 34.973 | 183 | 98 | 4 | 84 | 246 | 1197 | 1378 | 5.40e-23 | 100 |
MS.gene74396.t1 | AT2G23740 | 34.973 | 183 | 98 | 4 | 84 | 246 | 1197 | 1378 | 5.40e-23 | 100 |
MS.gene74396.t1 | AT2G23740 | 34.973 | 183 | 98 | 4 | 84 | 246 | 1190 | 1371 | 5.65e-23 | 100 |
MS.gene74396.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 6.10e-21 | 94.7 |
MS.gene74396.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 6.10e-21 | 94.7 |
MS.gene74396.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 6.10e-21 | 94.7 |
MS.gene74396.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 6.10e-21 | 94.7 |
MS.gene74396.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 6.10e-21 | 94.7 |
MS.gene74396.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 6.10e-21 | 94.7 |
MS.gene74396.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 6.10e-21 | 94.7 |
MS.gene74396.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 6.10e-21 | 94.7 |
MS.gene74396.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 586 | 757 | 7.29e-21 | 94.0 |
MS.gene74396.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 622 | 793 | 8.55e-21 | 94.0 |
MS.gene74396.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 622 | 793 | 8.55e-21 | 94.0 |
MS.gene74396.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 622 | 793 | 8.55e-21 | 94.0 |
MS.gene74396.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 622 | 793 | 8.55e-21 | 94.0 |
MS.gene74396.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 111 | 246 | 919 | 1055 | 1.42e-18 | 87.4 |
MS.gene74396.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 111 | 246 | 919 | 1055 | 1.42e-18 | 87.4 |
MS.gene74396.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 111 | 246 | 919 | 1055 | 1.42e-18 | 87.4 |
MS.gene74396.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 111 | 246 | 919 | 1055 | 1.42e-18 | 87.4 |
MS.gene74396.t1 | AT2G31650 | 37.410 | 139 | 82 | 2 | 111 | 246 | 898 | 1034 | 1.69e-18 | 87.0 |
MS.gene74396.t1 | AT2G22740 | 31.818 | 198 | 94 | 7 | 90 | 249 | 595 | 789 | 2.42e-18 | 86.7 |
MS.gene74396.t1 | AT2G22740 | 31.818 | 198 | 94 | 7 | 90 | 249 | 595 | 789 | 2.42e-18 | 86.7 |
MS.gene74396.t1 | AT4G27910 | 38.462 | 130 | 75 | 3 | 122 | 247 | 896 | 1024 | 3.84e-17 | 83.2 |
MS.gene74396.t1 | AT1G02580 | 32.258 | 186 | 105 | 5 | 66 | 235 | 486 | 666 | 7.24e-16 | 79.0 |
MS.gene74396.t1 | AT3G61740 | 38.168 | 131 | 75 | 4 | 122 | 247 | 886 | 1015 | 1.57e-15 | 78.2 |
MS.gene74396.t1 | AT3G61740 | 38.168 | 131 | 75 | 4 | 122 | 247 | 850 | 979 | 1.81e-15 | 78.2 |
MS.gene74396.t1 | AT5G53430 | 36.923 | 130 | 77 | 3 | 122 | 247 | 912 | 1040 | 2.45e-15 | 77.8 |
MS.gene74396.t1 | AT5G13960 | 26.568 | 271 | 144 | 8 | 34 | 249 | 219 | 489 | 4.40e-15 | 76.3 |
MS.gene74396.t1 | AT5G13960 | 27.306 | 271 | 142 | 8 | 34 | 249 | 353 | 623 | 7.62e-15 | 75.9 |
MS.gene74396.t1 | AT1G17770 | 28.283 | 198 | 103 | 6 | 86 | 246 | 494 | 689 | 1.34e-14 | 75.1 |
MS.gene74396.t1 | AT4G02020 | 31.373 | 153 | 96 | 4 | 100 | 252 | 696 | 839 | 1.45e-14 | 75.1 |
MS.gene74396.t1 | AT5G04940 | 27.434 | 226 | 108 | 7 | 80 | 250 | 446 | 670 | 2.71e-14 | 74.3 |
MS.gene74396.t1 | AT5G04940 | 27.434 | 226 | 108 | 7 | 80 | 250 | 446 | 670 | 2.71e-14 | 74.3 |
MS.gene74396.t1 | AT3G03750 | 29.189 | 185 | 106 | 6 | 90 | 253 | 170 | 350 | 4.36e-14 | 72.8 |
MS.gene74396.t1 | AT2G23380 | 36.111 | 108 | 67 | 2 | 122 | 229 | 536 | 641 | 3.97e-12 | 67.8 |
MS.gene74396.t1 | AT2G23380 | 32.308 | 130 | 86 | 2 | 100 | 229 | 741 | 868 | 4.39e-12 | 67.8 |
MS.gene74396.t1 | AT2G24740 | 27.551 | 196 | 97 | 6 | 95 | 250 | 565 | 755 | 1.30e-11 | 66.2 |
MS.gene74396.t1 | AT2G23740 | 34.454 | 119 | 65 | 2 | 84 | 190 | 1197 | 1314 | 6.59e-11 | 64.3 |
MS.gene74396.t1 | AT2G23740 | 34.454 | 119 | 65 | 2 | 84 | 190 | 1197 | 1314 | 6.59e-11 | 64.3 |
Find 63 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGGATACTGCGCTTTATA+TGG | 0.211128 | 6.2:+69107449 | None:intergenic |
ACAGATTTGGGATTATTAAA+TGG | 0.239891 | 6.2:-69101086 | MS.gene74396:intron |
ACCTGATATGCCACTAATTT+AGG | 0.249497 | 6.2:+69105601 | None:intergenic |
CATAGCAGGTTTGTTCAATT+TGG | 0.254145 | 6.2:-69105691 | MS.gene74396:intron |
CATTTCTGCATCTCAGTATT+CGG | 0.269242 | 6.2:+69106303 | None:intergenic |
TTCAATGCCCATCATGAAAA+AGG | 0.289802 | 6.2:-69107849 | None:intergenic |
GCCTAAATTAGTGGCATATC+AGG | 0.297012 | 6.2:-69105602 | MS.gene74396:intron |
CTTCTGTCTAGCTGTTCTTC+AGG | 0.341155 | 6.2:-69106983 | MS.gene74396:CDS |
CAGTATTCGGGCAGCAACTA+TGG | 0.356191 | 6.2:+69106316 | None:intergenic |
GTGATAGATGCGACAAATAA+AGG | 0.361111 | 6.2:-69106360 | MS.gene74396:CDS |
ATGACATGTCAAAAGAAGAT+TGG | 0.390357 | 6.2:-69100708 | MS.gene74396:CDS |
TCCATCTTTAGGATAATAGA+TGG | 0.401604 | 6.2:-69106153 | MS.gene74396:intron |
GTTCTTCAGGCTGCAAATGT+GGG | 0.415448 | 6.2:-69106970 | MS.gene74396:CDS |
TGTTCAATGTAGGCGTAAGC+TGG | 0.427738 | 6.2:-69105641 | MS.gene74396:CDS |
AAACATGCGAACAGAGGCTT+TGG | 0.435383 | 6.2:-69106440 | MS.gene74396:CDS |
ATGCGAAATCAATCGAGATA+TGG | 0.441968 | 6.2:-69106382 | MS.gene74396:CDS |
CGAATACTGAGATGCAGAAA+TGG | 0.448001 | 6.2:-69106302 | MS.gene74396:intron |
TGTTCTTCAGGCTGCAAATG+TGG | 0.451339 | 6.2:-69106971 | MS.gene74396:CDS |
ACCTACCAAGCCTAAATTAG+TGG | 0.455934 | 6.2:-69105611 | MS.gene74396:CDS |
GGCAAGAGAAAGAGTGATGA+TGG | 0.457143 | 6.2:-69107187 | MS.gene74396:CDS |
TTTGGACAGGTTTATCAGAA+TGG | 0.457254 | 6.2:-69101458 | MS.gene74396:intron |
TGACATGTCAAAAGAAGATT+GGG | 0.459343 | 6.2:-69100707 | MS.gene74396:CDS |
CAGATGAAGATATAAAGCTT+GGG | 0.468240 | 6.2:-69106601 | MS.gene74396:CDS |
TAGACTGAGAAATGTGGATC+TGG | 0.471672 | 6.2:-69106632 | MS.gene74396:CDS |
AGATATATATCTCACTAAGA+AGG | 0.474007 | 6.2:-69107209 | MS.gene74396:CDS |
AAGGATACTGCGCTTTATAT+GGG | 0.477321 | 6.2:+69107450 | None:intergenic |
ATTTCTGCATCTCAGTATTC+GGG | 0.478549 | 6.2:+69106304 | None:intergenic |
GCAGATGAAGATATAAAGCT+TGG | 0.481699 | 6.2:-69106602 | MS.gene74396:CDS |
ACGAAGCTGATGAACAATCT+TGG | 0.488292 | 6.2:-69107529 | MS.gene74396:CDS |
TGCAAGTCGTGATATAAAGA+AGG | 0.505376 | 6.2:-69106109 | MS.gene74396:CDS |
CAGAATGGAGGCCTGCAGAC+TGG | 0.507925 | 6.2:-69101443 | MS.gene74396:intron |
ATATGCCACTAATTTAGGCT+TGG | 0.510433 | 6.2:+69105606 | None:intergenic |
AATTGAGTAAGCAATTTGAA+TGG | 0.521092 | 6.2:+69101277 | None:intergenic |
TTCTTCAGGCTGCAAATGTG+GGG | 0.525973 | 6.2:-69106969 | MS.gene74396:CDS |
GATATATATCTCACTAAGAA+GGG | 0.539250 | 6.2:-69107208 | MS.gene74396:CDS |
GTAATTGAATATGTCGGAGA+AGG | 0.545438 | 6.2:-69106572 | MS.gene74396:intron |
AAACAAGCTTACCAGTCTGC+AGG | 0.545839 | 6.2:+69101432 | None:intergenic |
TTTCAGATCATGTTCGAGGA+TGG | 0.551741 | 6.2:-69100745 | MS.gene74396:intron |
ATAGATGGTGAAACTAGAAT+CGG | 0.561402 | 6.2:-69106138 | MS.gene74396:CDS |
GCCACTAATTTAGGCTTGGT+AGG | 0.568833 | 6.2:+69105610 | None:intergenic |
GTTATTATGATAAAACAACT+TGG | 0.570866 | 6.2:-69101243 | MS.gene74396:CDS |
ACTGTGGTGCTGTTCAATGT+AGG | 0.576878 | 6.2:-69105651 | MS.gene74396:CDS |
GAGTTTGTAATTGAATATGT+CGG | 0.587237 | 6.2:-69106578 | MS.gene74396:CDS |
TCTGATTCTACTGCCGTATG+TGG | 0.594663 | 6.2:-69107142 | MS.gene74396:CDS |
GGACAGGTTTATCAGAATGG+AGG | 0.603637 | 6.2:-69101455 | MS.gene74396:intron |
GTTCAATGTAGGCGTAAGCT+GGG | 0.608277 | 6.2:-69105640 | MS.gene74396:CDS |
GCAAGTCGTGATATAAAGAA+GGG | 0.610253 | 6.2:-69106108 | MS.gene74396:CDS |
TTTGGAATATGAAAGACCGC+GGG | 0.618052 | 6.2:-69106422 | MS.gene74396:CDS |
GTGGCAATCTCTACCACATA+CGG | 0.621883 | 6.2:+69107129 | None:intergenic |
ATGATAAAACATGCGAACAG+AGG | 0.637191 | 6.2:-69106446 | MS.gene74396:CDS |
AGATGAAGATATAAAGCTTG+GGG | 0.642869 | 6.2:-69106600 | MS.gene74396:CDS |
TAAAACAACTTGGAAATGTG+AGG | 0.644254 | 6.2:-69101233 | MS.gene74396:intron |
GTGGTAGAGATTGCCACTGT+GGG | 0.651295 | 6.2:-69107123 | MS.gene74396:intron |
CTTTGGAATATGAAAGACCG+CGG | 0.657735 | 6.2:-69106423 | MS.gene74396:CDS |
GAAATGTGGATCTGGAATTG+TGG | 0.670067 | 6.2:-69106624 | MS.gene74396:CDS |
TGAGTATTCTCGAAAACACA+AGG | 0.673656 | 6.2:-69101058 | MS.gene74396:intron |
GCAGATCAAGATTGCCACTG+TGG | 0.694777 | 6.2:-69105667 | MS.gene74396:CDS |
TGTGGTAGAGATTGCCACTG+TGG | 0.703352 | 6.2:-69107124 | MS.gene74396:CDS |
TACATTGAACAGCACCACAG+TGG | 0.726690 | 6.2:+69105653 | None:intergenic |
ACTTAGTTACTTACCCACAG+TGG | 0.732787 | 6.2:+69107110 | None:intergenic |
TGCTTGTAGACTGAGAAATG+TGG | 0.734376 | 6.2:-69106638 | MS.gene74396:intron |
AGTAGAAGTTTGTTTCCCCG+CGG | 0.738642 | 6.2:+69106406 | None:intergenic |
TTGGAATATGAAAGACCGCG+GGG | 0.772690 | 6.2:-69106421 | MS.gene74396:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 69100690 | 69107867 | 69100690 | ID=MS.gene74396 |
chr6.2 | mRNA | 69100690 | 69107867 | 69100690 | ID=MS.gene74396.t1;Parent=MS.gene74396 |
chr6.2 | exon | 69107850 | 69107867 | 69107850 | ID=MS.gene74396.t1.exon1;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69107850 | 69107867 | 69107850 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69107458 | 69107584 | 69107458 | ID=MS.gene74396.t1.exon2;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69107458 | 69107584 | 69107458 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69107124 | 69107229 | 69107124 | ID=MS.gene74396.t1.exon3;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69107124 | 69107229 | 69107124 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69106910 | 69107009 | 69106910 | ID=MS.gene74396.t1.exon4;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69106910 | 69107009 | 69106910 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69106573 | 69106651 | 69106573 | ID=MS.gene74396.t1.exon5;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69106573 | 69106651 | 69106573 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69106303 | 69106474 | 69106303 | ID=MS.gene74396.t1.exon6;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69106303 | 69106474 | 69106303 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69106084 | 69106164 | 69106084 | ID=MS.gene74396.t1.exon7;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69106084 | 69106164 | 69106084 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69105603 | 69105705 | 69105603 | ID=MS.gene74396.t1.exon8;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69105603 | 69105705 | 69105603 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69101444 | 69101471 | 69101444 | ID=MS.gene74396.t1.exon9;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69101444 | 69101471 | 69101444 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69101234 | 69101318 | 69101234 | ID=MS.gene74396.t1.exon10;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69101234 | 69101318 | 69101234 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69101059 | 69101104 | 69101059 | ID=MS.gene74396.t1.exon11;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69101059 | 69101104 | 69101059 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
chr6.2 | exon | 69100690 | 69100761 | 69100690 | ID=MS.gene74396.t1.exon12;Parent=MS.gene74396.t1 |
chr6.2 | CDS | 69100690 | 69100761 | 69100690 | ID=cds.MS.gene74396.t1;Parent=MS.gene74396.t1 |
Gene Sequence |
Protein sequence |