Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024821.t1 | XP_003610782.1 | 99.2 | 398 | 3 | 0 | 1 | 398 | 1 | 398 | 2.60E-221 | 777.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024821.t1 | Q9LJ87 | 67.3 | 416 | 110 | 6 | 8 | 398 | 1 | 415 | 1.0e-149 | 531.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024821.t1 | B7FK10 | 99.2 | 398 | 3 | 0 | 1 | 398 | 1 | 398 | 1.9e-221 | 777.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045470 | MS.gene024821 | PPI |
| MS.gene024821 | MS.gene75146 | PPI |
| MS.gene024821 | MS.gene04645 | PPI |
| MS.gene024821 | MS.gene016478 | PPI |
| MS.gene024821 | MS.gene59966 | PPI |
| MS.gene024821 | MS.gene046235 | PPI |
| MS.gene77777 | MS.gene024821 | PPI |
| MS.gene024821 | MS.gene063864 | PPI |
| MS.gene024821 | MS.gene74396 | PPI |
| MS.gene024821 | MS.gene74360 | PPI |
| MS.gene024821 | MS.gene037409 | PPI |
| MS.gene024821 | MS.gene018011 | PPI |
| MS.gene024821 | MS.gene59845 | PPI |
| MS.gene024821 | MS.gene52682 | PPI |
| MS.gene024821 | MS.gene47306 | PPI |
| MS.gene024821 | MS.gene058388 | PPI |
| MS.gene024821 | MS.gene055975 | PPI |
| MS.gene024821 | MS.gene87920 | PPI |
| MS.gene024821 | MS.gene78878 | PPI |
| MS.gene024821 | MS.gene95244 | PPI |
| MS.gene024821 | MS.gene016334 | PPI |
| MS.gene006712 | MS.gene024821 | PPI |
| MS.gene024821 | MS.gene59843 | PPI |
| MS.gene024821 | MS.gene90863 | PPI |
| MS.gene024821 | MS.gene55650 | PPI |
| MS.gene024821 | MS.gene49820 | PPI |
| MS.gene024821 | MS.gene060101 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024821.t1 | MTR_5g006960 | 99.246 | 398 | 3 | 0 | 1 | 398 | 1 | 398 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024821.t1 | AT3G22590 | 67.308 | 416 | 110 | 6 | 8 | 398 | 1 | 415 | 0.0 | 568 |
Find 95 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATAATTTCATCTGAATT+AGG | 0.209278 | 5.4:+2514508 | None:intergenic |
| CGAAGGTGTTCCGATTATTT+TGG | 0.225083 | 5.4:-2514203 | MS.gene024821:CDS |
| CTCCGTGATTTCACCATTAG+AGG | 0.266475 | 5.4:-2514865 | MS.gene024821:CDS |
| TCGGGGATCGAAGGCTGTTC+GGG | 0.270432 | 5.4:+2514565 | None:intergenic |
| AGTTGCTAAGAGTAGGTTAA+TGG | 0.277204 | 5.4:-2514305 | MS.gene024821:CDS |
| CTGTTACTGCTTATGAAGTT+AGG | 0.278775 | 5.4:-2514027 | MS.gene024821:CDS |
| ATGGGAAGTGCTGATGATTT+TGG | 0.292521 | 5.4:-2514286 | MS.gene024821:CDS |
| ATCTCGACATGATCCTTAAA+AGG | 0.296624 | 5.4:+2513917 | None:intergenic |
| ATCGGGGATCGAAGGCTGTT+CGG | 0.335598 | 5.4:+2514564 | None:intergenic |
| CCAATTCTTAACTATCTTCA+AGG | 0.358227 | 5.4:-2514622 | MS.gene024821:CDS |
| TTTCAAAATACTTTAGCTCT+TGG | 0.359318 | 5.4:-2514676 | MS.gene024821:CDS |
| CCTTGAAGATAGTTAAGAAT+TGG | 0.360763 | 5.4:+2514622 | None:intergenic |
| TTATGTACCTACTGATGTTA+AGG | 0.369770 | 5.4:-2514116 | MS.gene024821:CDS |
| CCTAAAATGCATCTTAAAAT+CGG | 0.374053 | 5.4:-2514226 | MS.gene024821:CDS |
| GAAATCACGGAGGAGGGTTA+AGG | 0.375174 | 5.4:+2514876 | None:intergenic |
| TATTACTATCTATAATGTTA+AGG | 0.376267 | 5.4:-2514158 | MS.gene024821:CDS |
| CTGTTCAGAAGAAGCTTAGT+AGG | 0.378789 | 5.4:-2514057 | MS.gene024821:CDS |
| TCAAGACAGGGCTGCGGCAT+TGG | 0.380453 | 5.4:-2513585 | MS.gene024821:CDS |
| GTTGCTAAGAGTAGGTTAAT+GGG | 0.397994 | 5.4:-2514304 | MS.gene024821:CDS |
| TGCGCTTAAACCTGAGGATT+GGG | 0.400010 | 5.4:-2513993 | MS.gene024821:CDS |
| CTCAACGGTAACTTCCGTTT+CGG | 0.409085 | 5.4:-2514820 | MS.gene024821:CDS |
| TTTGTCTAAGTCGCCTCTAA+TGG | 0.409790 | 5.4:+2514852 | None:intergenic |
| GGGAAAGGATTGGCAGTTCA+AGG | 0.438397 | 5.4:-2513945 | MS.gene024821:CDS |
| GGCTGCGGCATTGGAGGTGT+GGG | 0.440734 | 5.4:-2513576 | MS.gene024821:CDS |
| GAAAATACTCGGCGTGTTTG+AGG | 0.447850 | 5.4:+2514695 | None:intergenic |
| GAGTGCTGTTGGAGAGAAGA+AGG | 0.449313 | 5.4:+2514538 | None:intergenic |
| GGGCTGCGGCATTGGAGGTG+TGG | 0.449671 | 5.4:-2513577 | MS.gene024821:CDS |
| TGTTACTGCTTATGAAGTTA+GGG | 0.450144 | 5.4:-2514026 | MS.gene024821:CDS |
| GCACTCGGAACCAAAATAAT+CGG | 0.451402 | 5.4:+2514193 | None:intergenic |
| CTGCGCTTAAACCTGAGGAT+TGG | 0.455759 | 5.4:-2513994 | MS.gene024821:CDS |
| ACCTACTGATGTTAAGGTTA+AGG | 0.458526 | 5.4:-2514110 | MS.gene024821:CDS |
| TAGGAAATTGAGAGTGCTGT+TGG | 0.459018 | 5.4:+2514527 | None:intergenic |
| AGAACAAGCGGCATCAAGAC+AGG | 0.461687 | 5.4:-2513598 | MS.gene024821:CDS |
| GACAAAATCGTCCGTCTCAA+CGG | 0.466820 | 5.4:-2514835 | MS.gene024821:CDS |
| TTCTGAACAGTAACACAATC+CGG | 0.474450 | 5.4:+2514070 | None:intergenic |
| TGGAGAGAAGAAGGTTCATC+GGG | 0.475113 | 5.4:+2514547 | None:intergenic |
| AGTGTAGCGGTTTCCCTTTG+TGG | 0.475995 | 5.4:+2514753 | None:intergenic |
| AAATCACGGAGGAGGGTTAA+GGG | 0.487725 | 5.4:+2514877 | None:intergenic |
| GGCGATGAAAGGTGCTAAGC+CGG | 0.488489 | 5.4:-2514089 | MS.gene024821:CDS |
| AGACAGGGCTGCGGCATTGG+AGG | 0.490687 | 5.4:-2513582 | MS.gene024821:CDS |
| ATTGGAGGTGTGGGACAGAC+TGG | 0.497768 | 5.4:-2513567 | MS.gene024821:CDS |
| ACAGCTTATCGCTCCACAAA+GGG | 0.505860 | 5.4:-2514766 | MS.gene024821:CDS |
| GGGGAGATATTCAATTGAAT+CGG | 0.511278 | 5.4:+2514585 | None:intergenic |
| AGGATTGGCAGTTCAAGGAT+TGG | 0.523053 | 5.4:-2513940 | MS.gene024821:CDS |
| CAATTCTTAACTATCTTCAA+GGG | 0.535990 | 5.4:-2514621 | MS.gene024821:CDS |
| AGGTGTAATCTTCGCCGAAA+CGG | 0.539346 | 5.4:+2514806 | None:intergenic |
| GAATCCGATGAGAATGAGAA+TGG | 0.539396 | 5.4:-2514902 | MS.gene024821:CDS |
| TGGAGCGATAAGCTGTTTCG+AGG | 0.540395 | 5.4:+2514773 | None:intergenic |
| TCCTCAGGTTTAAGCGCAGA+AGG | 0.543271 | 5.4:+2513998 | None:intergenic |
| TAATGGTGAAATCACGGAGG+AGG | 0.550611 | 5.4:+2514869 | None:intergenic |
| TTGGAGAGAAGAAGGTTCAT+CGG | 0.553555 | 5.4:+2514546 | None:intergenic |
| TAAGCTGTTTCGAGGGAGCA+AGG | 0.557707 | 5.4:+2514781 | None:intergenic |
| TGAATTAGAATCACCACCGT+TGG | 0.559331 | 5.4:-2514485 | MS.gene024821:CDS |
| CGATCAGGGAGGGTTACGGA+AGG | 0.560319 | 5.4:+2514649 | None:intergenic |
| TGTTCAGAAGAAGCTTAGTA+GGG | 0.562083 | 5.4:-2514056 | MS.gene024821:CDS |
| CGCCTCTAATGGTGAAATCA+CGG | 0.562145 | 5.4:+2514863 | None:intergenic |
| GAAGGTTCATCGGGGATCGA+AGG | 0.564042 | 5.4:+2514556 | None:intergenic |
| GCCTTCTGCGCTTAAACCTG+AGG | 0.566756 | 5.4:-2513999 | MS.gene024821:CDS |
| ACAACACGATCCCAATCCTC+AGG | 0.568851 | 5.4:+2513983 | None:intergenic |
| ATATTCAATTGAATCGGTGG+TGG | 0.575653 | 5.4:+2514591 | None:intergenic |
| GAGTCTCATCAAAGGAAAGA+CGG | 0.577094 | 5.4:-2514331 | MS.gene024821:CDS |
| AGTCTCATCAAAGGAAAGAC+GGG | 0.577589 | 5.4:-2514330 | MS.gene024821:CDS |
| GGATCCATTCTCATTCTCAT+CGG | 0.580362 | 5.4:+2514898 | None:intergenic |
| CGAAGAGGAGCGTCAGAGGG+CGG | 0.580692 | 5.4:-2514353 | MS.gene024821:CDS |
| ATCATTGATATGAAATCCAA+CGG | 0.584020 | 5.4:+2514469 | None:intergenic |
| GATCAGGGAGGGTTACGGAA+GGG | 0.584300 | 5.4:+2514650 | None:intergenic |
| GCGGCATCAAGACAGGGCTG+CGG | 0.587480 | 5.4:-2513591 | MS.gene024821:CDS |
| GTTAAGGTTAAGGCGATGAA+AGG | 0.589838 | 5.4:-2514100 | MS.gene024821:CDS |
| AACAGCTTATCGCTCCACAA+AGG | 0.590351 | 5.4:-2514767 | MS.gene024821:CDS |
| TTCAGATTAGTAAGAACAAG+CGG | 0.592064 | 5.4:-2513610 | MS.gene024821:intron |
| AAGCTGTTTCGAGGGAGCAA+GGG | 0.594853 | 5.4:+2514782 | None:intergenic |
| AATGGTGAAATCACGGAGGA+GGG | 0.595264 | 5.4:+2514870 | None:intergenic |
| ACGCGAAGAGGAGCGTCAGA+GGG | 0.600539 | 5.4:-2514356 | MS.gene024821:CDS |
| ATGCATCTTAAAATCGGCGA+AGG | 0.600579 | 5.4:-2514220 | MS.gene024821:CDS |
| ACGGGTTAGTTGCTAAGAGT+AGG | 0.600680 | 5.4:-2514312 | MS.gene024821:CDS |
| CTGCGAAGACTGTGAAGCAG+TGG | 0.602270 | 5.4:-2513740 | MS.gene024821:CDS |
| AACGCGAAGAGGAGCGTCAG+AGG | 0.606471 | 5.4:-2514357 | MS.gene024821:CDS |
| GAGATATTCAATTGAATCGG+TGG | 0.607369 | 5.4:+2514588 | None:intergenic |
| TGCGGCTACTAAACGCGAAG+AGG | 0.613310 | 5.4:-2514368 | MS.gene024821:CDS |
| AGAGATTCACGATCCTTGAG+TGG | 0.613773 | 5.4:+2514430 | None:intergenic |
| AACAGCTGAGAAGCCACTCA+AGG | 0.614658 | 5.4:-2514443 | MS.gene024821:CDS |
| AACGGAAGTTACCGTTGAGA+CGG | 0.627855 | 5.4:+2514824 | None:intergenic |
| GTGGAATGTGAAGATTATCT+CGG | 0.629342 | 5.4:-2513721 | MS.gene024821:intron |
| GCCTTAACCTTAACATCAGT+AGG | 0.634280 | 5.4:+2514109 | None:intergenic |
| CTAGGGTTTCGAGAGTGTAG+CGG | 0.634520 | 5.4:+2514740 | None:intergenic |
| TGTTTCGAGGGAGCAAGGGA+AGG | 0.637187 | 5.4:+2514786 | None:intergenic |
| ATAAGTGTCTGAAAAGCACT+CGG | 0.638006 | 5.4:+2514178 | None:intergenic |
| GAACAAGCGGCATCAAGACA+GGG | 0.639576 | 5.4:-2513597 | MS.gene024821:CDS |
| CGGGGATCGAAGGCTGTTCG+GGG | 0.642909 | 5.4:+2514566 | None:intergenic |
| AGAGGGCGGAGTCTCATCAA+AGG | 0.643681 | 5.4:-2514339 | MS.gene024821:CDS |
| GGAGCGATAAGCTGTTTCGA+GGG | 0.662749 | 5.4:+2514774 | None:intergenic |
| GGATTGGGATCGTGTTGTCG+CGG | 0.703493 | 5.4:-2513978 | MS.gene024821:CDS |
| ATTGATATGAAATCCAACGG+TGG | 0.724969 | 5.4:+2514472 | None:intergenic |
| CTCTAATGGTGAAATCACGG+AGG | 0.766855 | 5.4:+2514866 | None:intergenic |
| GGAGAGAAGAAGGTTCATCG+GGG | 0.783983 | 5.4:+2514548 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACAATCAAAATAAAA+TGG | + | chr5.4:2514573-2514592 | None:intergenic | 10.0% |
| !! | TATTACTATCTATAATGTTA+AGG | - | chr5.4:2514281-2514300 | MS.gene024821:CDS | 15.0% |
| !!! | TAAAGTATTTTGAAAATACT+CGG | + | chr5.4:2513758-2513777 | None:intergenic | 15.0% |
| !!! | CTATAATGTTAAGGATTTTT+TGG | - | chr5.4:2514290-2514309 | MS.gene024821:CDS | 20.0% |
| ! | ATCATTGATATGAAATCCAA+CGG | + | chr5.4:2513973-2513992 | None:intergenic | 25.0% |
| ! | CAATTCTTAACTATCTTCAA+GGG | - | chr5.4:2513818-2513837 | MS.gene024821:intron | 25.0% |
| ! | CCTAAAATGCATCTTAAAAT+CGG | - | chr5.4:2514213-2514232 | MS.gene024821:CDS | 25.0% |
| ! | GTGATAATTTCATCTGAATT+AGG | + | chr5.4:2513934-2513953 | None:intergenic | 25.0% |
| !! | ATTTTTGATGTAGTGAACTA+GGG | + | chr5.4:2513719-2513738 | None:intergenic | 25.0% |
| !! | TCGAGATTTTCAATAAAAGT+CGG | - | chr5.4:2514538-2514557 | MS.gene024821:CDS | 25.0% |
| !!! | TAGTTACTGGATTTTTTATG+CGG | - | chr5.4:2514654-2514673 | MS.gene024821:CDS | 25.0% |
| !!! | TTAAGATGCATTTTAGGTTT+CGG | + | chr5.4:2514210-2514229 | None:intergenic | 25.0% |
| !!! | TTAAGGATTTTTTGGAAGAT+GGG | - | chr5.4:2514298-2514317 | MS.gene024821:CDS | 25.0% |
| !!! | TTTCAAAATACTTTAGCTCT+TGG | - | chr5.4:2513763-2513782 | MS.gene024821:CDS | 25.0% |
| AGTAACTACAACAATTTGAC+AGG | + | chr5.4:2514642-2514661 | None:intergenic | 30.0% | |
| CCAATTCTTAACTATCTTCA+AGG | - | chr5.4:2513817-2513836 | MS.gene024821:intron | 30.0% | |
| CCTTGAAGATAGTTAAGAAT+TGG | + | chr5.4:2513820-2513839 | None:intergenic | 30.0% | |
| GTAACTACAACAATTTGACA+GGG | + | chr5.4:2514641-2514660 | None:intergenic | 30.0% | |
| TAACTACAACAATTTGACAG+GGG | + | chr5.4:2514640-2514659 | None:intergenic | 30.0% | |
| TGTCAAATTGTTGTAGTTAC+TGG | - | chr5.4:2514641-2514660 | MS.gene024821:CDS | 30.0% | |
| TGTTACTGCTTATGAAGTTA+GGG | - | chr5.4:2514413-2514432 | MS.gene024821:CDS | 30.0% | |
| TTATGTACCTACTGATGTTA+AGG | - | chr5.4:2514323-2514342 | MS.gene024821:CDS | 30.0% | |
| TTCAGATTAGTAAGAACAAG+CGG | - | chr5.4:2514829-2514848 | MS.gene024821:CDS | 30.0% | |
| ! | GATTTTTGATGTAGTGAACT+AGG | + | chr5.4:2513720-2513739 | None:intergenic | 30.0% |
| !!! | CCGATTTTAAGATGCATTTT+AGG | + | chr5.4:2514216-2514235 | None:intergenic | 30.0% |
| !!! | GTTAAGGATTTTTTGGAAGA+TGG | - | chr5.4:2514297-2514316 | MS.gene024821:CDS | 30.0% |
| !!! | TAAGAATTGGTTTTCGATCA+GGG | + | chr5.4:2513807-2513826 | None:intergenic | 30.0% |
| !!! | TAAGGATTTTTTGGAAGATG+GGG | - | chr5.4:2514299-2514318 | MS.gene024821:CDS | 30.0% |
| !!! | TTAAGAATTGGTTTTCGATC+AGG | + | chr5.4:2513808-2513827 | None:intergenic | 30.0% |
| !!! | TTTTTGTTTTGGGAAAGGAT+TGG | - | chr5.4:2514484-2514503 | MS.gene024821:CDS | 30.0% |
| ACCTACTGATGTTAAGGTTA+AGG | - | chr5.4:2514329-2514348 | MS.gene024821:CDS | 35.0% | |
| AGTTGCTAAGAGTAGGTTAA+TGG | - | chr5.4:2514134-2514153 | MS.gene024821:CDS | 35.0% | |
| ATATTCAATTGAATCGGTGG+TGG | + | chr5.4:2513851-2513870 | None:intergenic | 35.0% | |
| ATCTCGACATGATCCTTAAA+AGG | + | chr5.4:2514525-2514544 | None:intergenic | 35.0% | |
| ATTGATATGAAATCCAACGG+TGG | + | chr5.4:2513970-2513989 | None:intergenic | 35.0% | |
| CTGTTACTGCTTATGAAGTT+AGG | - | chr5.4:2514412-2514431 | MS.gene024821:CDS | 35.0% | |
| GAGATATTCAATTGAATCGG+TGG | + | chr5.4:2513854-2513873 | None:intergenic | 35.0% | |
| GGGGAGATATTCAATTGAAT+CGG | + | chr5.4:2513857-2513876 | None:intergenic | 35.0% | |
| GTGCAGTGTAAGTTAAAAAC+TGG | + | chr5.4:2514792-2514811 | None:intergenic | 35.0% | |
| GTGGAATGTGAAGATTATCT+CGG | - | chr5.4:2514718-2514737 | MS.gene024821:CDS | 35.0% | |
| GTTGCTAAGAGTAGGTTAAT+GGG | - | chr5.4:2514135-2514154 | MS.gene024821:CDS | 35.0% | |
| TGTTCAGAAGAAGCTTAGTA+GGG | - | chr5.4:2514383-2514402 | MS.gene024821:CDS | 35.0% | |
| TTCTGAACAGTAACACAATC+CGG | + | chr5.4:2514372-2514391 | None:intergenic | 35.0% | |
| ! | TTTTTACAGCGTGTTAGTTG+CGG | - | chr5.4:2514053-2514072 | MS.gene024821:CDS | 35.0% |
| !! | ATAAGTGTCTGAAAAGCACT+CGG | + | chr5.4:2514264-2514283 | None:intergenic | 35.0% |
| !!! | ATTTTGGTGGTGATGAAATG+GGG | - | chr5.4:2514169-2514188 | MS.gene024821:CDS | 35.0% |
| !!! | GATTTTGGTGGTGATGAAAT+GGG | - | chr5.4:2514168-2514187 | MS.gene024821:CDS | 35.0% |
| !!! | TGATTTTGGTGGTGATGAAA+TGG | - | chr5.4:2514167-2514186 | MS.gene024821:CDS | 35.0% |
| AGTCTCATCAAAGGAAAGAC+GGG | - | chr5.4:2514109-2514128 | MS.gene024821:CDS | 40.0% | |
| ATGCATCTTAAAATCGGCGA+AGG | - | chr5.4:2514219-2514238 | MS.gene024821:CDS | 40.0% | |
| CTGTTCAGAAGAAGCTTAGT+AGG | - | chr5.4:2514382-2514401 | MS.gene024821:CDS | 40.0% | |
| GAATCCGATGAGAATGAGAA+TGG | - | chr5.4:2513537-2513556 | MS.gene024821:CDS | 40.0% | |
| GAGTCTCATCAAAGGAAAGA+CGG | - | chr5.4:2514108-2514127 | MS.gene024821:CDS | 40.0% | |
| GCACTCGGAACCAAAATAAT+CGG | + | chr5.4:2514249-2514268 | None:intergenic | 40.0% | |
| GCATAGCAGTAGTTAGAACA+AGG | + | chr5.4:2514754-2514773 | None:intergenic | 40.0% | |
| GCCTTAACCTTAACATCAGT+AGG | + | chr5.4:2514333-2514352 | None:intergenic | 40.0% | |
| GGATCCATTCTCATTCTCAT+CGG | + | chr5.4:2513544-2513563 | None:intergenic | 40.0% | |
| GTTAAGGTTAAGGCGATGAA+AGG | - | chr5.4:2514339-2514358 | MS.gene024821:CDS | 40.0% | |
| TGAATTAGAATCACCACCGT+TGG | - | chr5.4:2513954-2513973 | MS.gene024821:CDS | 40.0% | |
| TTGGAGAGAAGAAGGTTCAT+CGG | + | chr5.4:2513896-2513915 | None:intergenic | 40.0% | |
| TTTGTCTAAGTCGCCTCTAA+TGG | + | chr5.4:2513590-2513609 | None:intergenic | 40.0% | |
| !! | TAGGAAATTGAGAGTGCTGT+TGG | + | chr5.4:2513915-2513934 | None:intergenic | 40.0% |
| !! | TGTTGTCGCGGTTTTTGTTT+TGG | - | chr5.4:2514473-2514492 | MS.gene024821:CDS | 40.0% |
| !!! | AATTGGTTTTCGATCAGGGA+GGG | + | chr5.4:2513803-2513822 | None:intergenic | 40.0% |
| !!! | ATGGGAAGTGCTGATGATTT+TGG | - | chr5.4:2514153-2514172 | MS.gene024821:CDS | 40.0% |
| !!! | CGAAGGTGTTCCGATTATTT+TGG | - | chr5.4:2514236-2514255 | MS.gene024821:CDS | 40.0% |
| !!! | GTTCAAGGATTGGCCTTTTA+AGG | - | chr5.4:2514509-2514528 | MS.gene024821:CDS | 40.0% |
| !!! | GTTGTCGCGGTTTTTGTTTT+GGG | - | chr5.4:2514474-2514493 | MS.gene024821:CDS | 40.0% |
| AAATCACGGAGGAGGGTTAA+GGG | + | chr5.4:2513565-2513584 | None:intergenic | 45.0% | |
| AACAGCTTATCGCTCCACAA+AGG | - | chr5.4:2513672-2513691 | MS.gene024821:intron | 45.0% | |
| AACGGAAGTTACCGTTGAGA+CGG | + | chr5.4:2513618-2513637 | None:intergenic | 45.0% | |
| AATGGTGAAATCACGGAGGA+GGG | + | chr5.4:2513572-2513591 | None:intergenic | 45.0% | |
| ACAGCTTATCGCTCCACAAA+GGG | - | chr5.4:2513673-2513692 | MS.gene024821:intron | 45.0% | |
| AGAGATTCACGATCCTTGAG+TGG | + | chr5.4:2514012-2514031 | None:intergenic | 45.0% | |
| AGGTGTAATCTTCGCCGAAA+CGG | + | chr5.4:2513636-2513655 | None:intergenic | 45.0% | |
| CGCCTCTAATGGTGAAATCA+CGG | + | chr5.4:2513579-2513598 | None:intergenic | 45.0% | |
| CTCAACGGTAACTTCCGTTT+CGG | - | chr5.4:2513619-2513638 | MS.gene024821:intron | 45.0% | |
| CTCCGTGATTTCACCATTAG+AGG | - | chr5.4:2513574-2513593 | MS.gene024821:CDS | 45.0% | |
| CTCTAATGGTGAAATCACGG+AGG | + | chr5.4:2513576-2513595 | None:intergenic | 45.0% | |
| GAAAATACTCGGCGTGTTTG+AGG | + | chr5.4:2513747-2513766 | None:intergenic | 45.0% | |
| GACAAAATCGTCCGTCTCAA+CGG | - | chr5.4:2513604-2513623 | MS.gene024821:CDS | 45.0% | |
| TAATGGTGAAATCACGGAGG+AGG | + | chr5.4:2513573-2513592 | None:intergenic | 45.0% | |
| TGCGCTTAAACCTGAGGATT+GGG | - | chr5.4:2514446-2514465 | MS.gene024821:CDS | 45.0% | |
| TGGAGAGAAGAAGGTTCATC+GGG | + | chr5.4:2513895-2513914 | None:intergenic | 45.0% | |
| ! | AGGATTGGCAGTTCAAGGAT+TGG | - | chr5.4:2514499-2514518 | MS.gene024821:CDS | 45.0% |
| ! | TTTTCGATCAGGGAGGGTTA+CGG | + | chr5.4:2513797-2513816 | None:intergenic | 45.0% |
| !! | ACGGGTTAGTTGCTAAGAGT+AGG | - | chr5.4:2514127-2514146 | MS.gene024821:CDS | 45.0% |
| !!! | CGCGGTTTTTGTTTTGGGAA+AGG | - | chr5.4:2514479-2514498 | MS.gene024821:CDS | 45.0% |
| !!! | GAATTGGTTTTCGATCAGGG+AGG | + | chr5.4:2513804-2513823 | None:intergenic | 45.0% |
| !!! | GGAAGTGCTGATGATTTTGG+TGG | - | chr5.4:2514156-2514175 | MS.gene024821:CDS | 45.0% |
| AACAGCTGAGAAGCCACTCA+AGG | - | chr5.4:2513996-2514015 | MS.gene024821:CDS | 50.0% | |
| ACAACACGATCCCAATCCTC+AGG | + | chr5.4:2514459-2514478 | None:intergenic | 50.0% | |
| AGAACAAGCGGCATCAAGAC+AGG | - | chr5.4:2514841-2514860 | MS.gene024821:CDS | 50.0% | |
| AGTGTAGCGGTTTCCCTTTG+TGG | + | chr5.4:2513689-2513708 | None:intergenic | 50.0% | |
| CTGCGCTTAAACCTGAGGAT+TGG | - | chr5.4:2514445-2514464 | MS.gene024821:CDS | 50.0% | |
| GAAATCACGGAGGAGGGTTA+AGG | + | chr5.4:2513566-2513585 | None:intergenic | 50.0% | |
| GAACAAGCGGCATCAAGACA+GGG | - | chr5.4:2514842-2514861 | MS.gene024821:CDS | 50.0% | |
| GGAGAGAAGAAGGTTCATCG+GGG | + | chr5.4:2513894-2513913 | None:intergenic | 50.0% | |
| TCCTCAGGTTTAAGCGCAGA+AGG | + | chr5.4:2514444-2514463 | None:intergenic | 50.0% | |
| ! | AAGCTGTTTCGAGGGAGCAA+GGG | + | chr5.4:2513660-2513679 | None:intergenic | 50.0% |
| ! | CTAGGGTTTCGAGAGTGTAG+CGG | + | chr5.4:2513702-2513721 | None:intergenic | 50.0% |
| ! | GAGTGCTGTTGGAGAGAAGA+AGG | + | chr5.4:2513904-2513923 | None:intergenic | 50.0% |
| ! | GGAGCGATAAGCTGTTTCGA+GGG | + | chr5.4:2513668-2513687 | None:intergenic | 50.0% |
| ! | GGGAAAGGATTGGCAGTTCA+AGG | - | chr5.4:2514494-2514513 | MS.gene024821:CDS | 50.0% |
| ! | TAAGCTGTTTCGAGGGAGCA+AGG | + | chr5.4:2513661-2513680 | None:intergenic | 50.0% |
| ! | TGGAGCGATAAGCTGTTTCG+AGG | + | chr5.4:2513669-2513688 | None:intergenic | 50.0% |
| AGAGGGCGGAGTCTCATCAA+AGG | - | chr5.4:2514100-2514119 | MS.gene024821:CDS | 55.0% | |
| ATCGGGGATCGAAGGCTGTT+CGG | + | chr5.4:2513878-2513897 | None:intergenic | 55.0% | |
| CTGCGAAGACTGTGAAGCAG+TGG | - | chr5.4:2514699-2514718 | MS.gene024821:CDS | 55.0% | |
| GAAGGTTCATCGGGGATCGA+AGG | + | chr5.4:2513886-2513905 | None:intergenic | 55.0% | |
| GATCAGGGAGGGTTACGGAA+GGG | + | chr5.4:2513792-2513811 | None:intergenic | 55.0% | |
| GCCTTCTGCGCTTAAACCTG+AGG | - | chr5.4:2514440-2514459 | MS.gene024821:CDS | 55.0% | |
| GGATTGGGATCGTGTTGTCG+CGG | - | chr5.4:2514461-2514480 | MS.gene024821:CDS | 55.0% | |
| TGCGGCTACTAAACGCGAAG+AGG | - | chr5.4:2514071-2514090 | MS.gene024821:CDS | 55.0% | |
| TGTTTCGAGGGAGCAAGGGA+AGG | + | chr5.4:2513656-2513675 | None:intergenic | 55.0% | |
| ! | ATTGGAGGTGTGGGACAGAC+TGG | - | chr5.4:2514872-2514891 | MS.gene024821:CDS | 55.0% |
| !! | GGCGATGAAAGGTGCTAAGC+CGG | - | chr5.4:2514350-2514369 | MS.gene024821:CDS | 55.0% |
| CGATCAGGGAGGGTTACGGA+AGG | + | chr5.4:2513793-2513812 | None:intergenic | 60.0% | |
| TCAAGACAGGGCTGCGGCAT+TGG | - | chr5.4:2514854-2514873 | MS.gene024821:CDS | 60.0% | |
| TCGGGGATCGAAGGCTGTTC+GGG | + | chr5.4:2513877-2513896 | None:intergenic | 60.0% | |
| !! | AACGCGAAGAGGAGCGTCAG+AGG | - | chr5.4:2514082-2514101 | MS.gene024821:CDS | 60.0% |
| !! | ACGCGAAGAGGAGCGTCAGA+GGG | - | chr5.4:2514083-2514102 | MS.gene024821:CDS | 60.0% |
| CGGGGATCGAAGGCTGTTCG+GGG | + | chr5.4:2513876-2513895 | None:intergenic | 65.0% | |
| GCGGCATCAAGACAGGGCTG+CGG | - | chr5.4:2514848-2514867 | MS.gene024821:CDS | 65.0% | |
| ! | AGACAGGGCTGCGGCATTGG+AGG | - | chr5.4:2514857-2514876 | MS.gene024821:CDS | 65.0% |
| ! | GGCTGCGGCATTGGAGGTGT+GGG | - | chr5.4:2514863-2514882 | MS.gene024821:CDS | 65.0% |
| !! | CGAAGAGGAGCGTCAGAGGG+CGG | - | chr5.4:2514086-2514105 | MS.gene024821:CDS | 65.0% |
| ! | GGGCTGCGGCATTGGAGGTG+TGG | - | chr5.4:2514862-2514881 | MS.gene024821:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2513535 | 2514926 | 2513535 | ID=MS.gene024821 |
| chr5.4 | mRNA | 2513535 | 2514926 | 2513535 | ID=MS.gene024821.t1;Parent=MS.gene024821 |
| chr5.4 | exon | 2513906 | 2514926 | 2513906 | ID=MS.gene024821.t1.exon1;Parent=MS.gene024821.t1 |
| chr5.4 | CDS | 2513906 | 2514926 | 2513906 | ID=cds.MS.gene024821.t1;Parent=MS.gene024821.t1 |
| chr5.4 | exon | 2513722 | 2513804 | 2513722 | ID=MS.gene024821.t1.exon2;Parent=MS.gene024821.t1 |
| chr5.4 | CDS | 2513722 | 2513804 | 2513722 | ID=cds.MS.gene024821.t1;Parent=MS.gene024821.t1 |
| chr5.4 | exon | 2513535 | 2513627 | 2513535 | ID=MS.gene024821.t1.exon3;Parent=MS.gene024821.t1 |
| chr5.4 | CDS | 2513535 | 2513627 | 2513535 | ID=cds.MS.gene024821.t1;Parent=MS.gene024821.t1 |
| Gene Sequence |
| Protein sequence |
