Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21793.t1 | XP_003610782.1 | 99.5 | 398 | 2 | 0 | 1 | 398 | 1 | 398 | 8.80E-222 | 779.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21793.t1 | Q9LJ87 | 67.3 | 416 | 110 | 6 | 8 | 398 | 1 | 415 | 2.2e-149 | 530.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21793.t1 | B7FK10 | 99.5 | 398 | 2 | 0 | 1 | 398 | 1 | 398 | 6.4e-222 | 779.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene046235 | MS.gene21793 | PPI |
| MS.gene87920 | MS.gene21793 | PPI |
| MS.gene016334 | MS.gene21793 | PPI |
| MS.gene21793 | MS.gene59845 | PPI |
| MS.gene018011 | MS.gene21793 | PPI |
| MS.gene52682 | MS.gene21793 | PPI |
| MS.gene21793 | MS.gene59843 | PPI |
| MS.gene21793 | MS.gene90863 | PPI |
| MS.gene037409 | MS.gene21793 | PPI |
| MS.gene21793 | MS.gene055975 | PPI |
| MS.gene95244 | MS.gene21793 | PPI |
| MS.gene47306 | MS.gene21793 | PPI |
| MS.gene006712 | MS.gene21793 | PPI |
| MS.gene21793 | MS.gene55650 | PPI |
| MS.gene21793 | MS.gene49820 | PPI |
| MS.gene04645 | MS.gene21793 | PPI |
| MS.gene21793 | MS.gene060101 | PPI |
| MS.gene063864 | MS.gene21793 | PPI |
| MS.gene21793 | MS.gene75146 | PPI |
| MS.gene016478 | MS.gene21793 | PPI |
| MS.gene21793 | MS.gene74396 | PPI |
| MS.gene74360 | MS.gene21793 | PPI |
| MS.gene77777 | MS.gene21793 | PPI |
| MS.gene045470 | MS.gene21793 | PPI |
| MS.gene21793 | MS.gene59966 | PPI |
| MS.gene058388 | MS.gene21793 | PPI |
| MS.gene78878 | MS.gene21793 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21793.t1 | MTR_5g006960 | 99.497 | 398 | 2 | 0 | 1 | 398 | 1 | 398 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21793.t1 | AT3G22590 | 67.308 | 416 | 110 | 6 | 8 | 398 | 1 | 415 | 0.0 | 568 |
Find 95 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATAATTTCATCTGAATT+AGG | 0.209278 | 5.2:+1541134 | None:intergenic |
| CGAAGGTGTTCCGATTATTT+TGG | 0.215416 | 5.2:-1540829 | MS.gene21793:CDS |
| CCTAAAATGCATCTTAAAAT+TGG | 0.235330 | 5.2:-1540852 | MS.gene21793:CDS |
| CTCCGTGATTTCACCATTAG+AGG | 0.266475 | 5.2:-1541491 | MS.gene21793:CDS |
| AGTGGCTAAGAGTAGGTTAA+TGG | 0.278701 | 5.2:-1540931 | MS.gene21793:CDS |
| CTGTTACTGCTTATGAAGTT+AGG | 0.278775 | 5.2:-1540653 | MS.gene21793:CDS |
| ATGGGAAGTGCTGATGATTT+TGG | 0.292521 | 5.2:-1540912 | MS.gene21793:CDS |
| ATCTCGACATGATCCTTAAA+AGG | 0.296624 | 5.2:+1540543 | None:intergenic |
| TCGGGAATCGAAGGCTGTTC+GGG | 0.316057 | 5.2:+1541191 | None:intergenic |
| CCAATTCTTAATTATCTTCA+AGG | 0.337336 | 5.2:-1541248 | MS.gene21793:CDS |
| TTTCAAAATACTTTAGCTCT+TGG | 0.359318 | 5.2:-1541302 | MS.gene21793:CDS |
| CCTTGAAGATAATTAAGAAT+TGG | 0.366346 | 5.2:+1541248 | None:intergenic |
| TTATGTACCTACTGATGTTA+AGG | 0.369770 | 5.2:-1540742 | MS.gene21793:CDS |
| GAAATCACGGAGGAGGGTTA+AGG | 0.375174 | 5.2:+1541502 | None:intergenic |
| TATTACTATCTATAATGTTA+AGG | 0.376267 | 5.2:-1540784 | MS.gene21793:CDS |
| CTGTTCAGAAGAAGCTTAGT+AGG | 0.378789 | 5.2:-1540683 | MS.gene21793:CDS |
| ATCGGGAATCGAAGGCTGTT+CGG | 0.385203 | 5.2:+1541190 | None:intergenic |
| GTGGCTAAGAGTAGGTTAAT+GGG | 0.394144 | 5.2:-1540930 | MS.gene21793:CDS |
| TGCGCTTAAACCTGAGGATT+GGG | 0.400010 | 5.2:-1540619 | MS.gene21793:CDS |
| CTCAACGGTAACTTCCGTTT+CGG | 0.409085 | 5.2:-1541446 | MS.gene21793:CDS |
| TTTGTCTAAGTCGCCTCTAA+TGG | 0.409790 | 5.2:+1541478 | None:intergenic |
| GGGAAAGGATTGGCAGTTCA+AGG | 0.438397 | 5.2:-1540571 | MS.gene21793:CDS |
| GAGTGCTGTTGGAGAGAAGA+AGG | 0.449313 | 5.2:+1541164 | None:intergenic |
| TGTTACTGCTTATGAAGTTA+GGG | 0.450144 | 5.2:-1540652 | MS.gene21793:CDS |
| GGCTGCAGCATTGGAGGTGT+GGG | 0.450837 | 5.2:-1540200 | MS.gene21793:CDS |
| GCACTCGGAACCAAAATAAT+CGG | 0.451402 | 5.2:+1540819 | None:intergenic |
| CTGCGCTTAAACCTGAGGAT+TGG | 0.455759 | 5.2:-1540620 | MS.gene21793:CDS |
| TCAAGACAGGGCTGCAGCAT+TGG | 0.456706 | 5.2:-1540209 | MS.gene21793:CDS |
| TCAAAGGAAGGACGGGTTAG+TGG | 0.457964 | 5.2:-1540949 | MS.gene21793:CDS |
| ACCTACTGATGTTAAGGTTA+AGG | 0.458526 | 5.2:-1540736 | MS.gene21793:CDS |
| TAGGAAATTGAGAGTGCTGT+TGG | 0.459018 | 5.2:+1541153 | None:intergenic |
| AGAACAAGCGGCATCAAGAC+AGG | 0.461687 | 5.2:-1540222 | MS.gene21793:CDS |
| GACAAAATCGTCCGTCTCAA+CGG | 0.466820 | 5.2:-1541461 | MS.gene21793:CDS |
| TTCTGAACAGTAACACAATC+CGG | 0.474450 | 5.2:+1540696 | None:intergenic |
| AGTGTAGCGGTTTCCCTTTG+TGG | 0.475995 | 5.2:+1541379 | None:intergenic |
| ATTGGAGGTGTGGGACAGAC+TGG | 0.485990 | 5.2:-1540191 | MS.gene21793:CDS |
| AAATCACGGAGGAGGGTTAA+GGG | 0.487725 | 5.2:+1541503 | None:intergenic |
| GGCGATGAAAGGTGCTAAGC+CGG | 0.488489 | 5.2:-1540715 | MS.gene21793:CDS |
| AGACAGGGCTGCAGCATTGG+AGG | 0.494239 | 5.2:-1540206 | MS.gene21793:CDS |
| ACAGCTTATCGCTCCACAAA+GGG | 0.505860 | 5.2:-1541392 | MS.gene21793:CDS |
| CAATTCTTAATTATCTTCAA+GGG | 0.510200 | 5.2:-1541247 | MS.gene21793:CDS |
| GAAAATACTCGGTGTGTTTG+AGG | 0.510945 | 5.2:+1541321 | None:intergenic |
| GGGGAGATATTCAATTGAAT+CGG | 0.511278 | 5.2:+1541211 | None:intergenic |
| GGGCTGCAGCATTGGAGGTG+TGG | 0.511984 | 5.2:-1540201 | MS.gene21793:CDS |
| AGGATTGGCAGTTCAAGGAT+TGG | 0.523053 | 5.2:-1540566 | MS.gene21793:CDS |
| TGGAGAGAAGAAGGTTCATC+GGG | 0.535456 | 5.2:+1541173 | None:intergenic |
| AGGTGTAATCTTCGCCGAAA+CGG | 0.539346 | 5.2:+1541432 | None:intergenic |
| GAATCCGATGAGAATGAGAA+TGG | 0.539396 | 5.2:-1541528 | MS.gene21793:CDS |
| TGGAGCGATAAGCTGTTTCG+AGG | 0.540395 | 5.2:+1541399 | None:intergenic |
| TCCTCAGGTTTAAGCGCAGA+AGG | 0.543271 | 5.2:+1540624 | None:intergenic |
| TAATGGTGAAATCACGGAGG+AGG | 0.550611 | 5.2:+1541495 | None:intergenic |
| TTGGAGAGAAGAAGGTTCAT+CGG | 0.553555 | 5.2:+1541172 | None:intergenic |
| TAAGCTGTTTCGAGGGAGCA+AGG | 0.557707 | 5.2:+1541407 | None:intergenic |
| TGAATTAGAATCACCACCGT+TGG | 0.559331 | 5.2:-1541111 | MS.gene21793:CDS |
| CGATCAGGGAGGGTTACGGA+AGG | 0.560319 | 5.2:+1541275 | None:intergenic |
| TGTTCAGAAGAAGCTTAGTA+GGG | 0.562083 | 5.2:-1540682 | MS.gene21793:CDS |
| CGCCTCTAATGGTGAAATCA+CGG | 0.562145 | 5.2:+1541489 | None:intergenic |
| GAAGGTTCATCGGGAATCGA+AGG | 0.564042 | 5.2:+1541182 | None:intergenic |
| GCCTTCTGCGCTTAAACCTG+AGG | 0.566756 | 5.2:-1540625 | MS.gene21793:CDS |
| ACAACACGATCCCAATCCTC+AGG | 0.568851 | 5.2:+1540609 | None:intergenic |
| AGTCTCATCAAAGGAAGGAC+GGG | 0.572028 | 5.2:-1540956 | MS.gene21793:CDS |
| ATATTCAATTGAATCGGTGG+TGG | 0.575653 | 5.2:+1541217 | None:intergenic |
| GGATCCATTCTCATTCTCAT+CGG | 0.580362 | 5.2:+1541524 | None:intergenic |
| CGAAGAGGAGCGTCAGAGGG+CGG | 0.580692 | 5.2:-1540979 | MS.gene21793:CDS |
| ATCATTGATATGAAATCCAA+CGG | 0.584020 | 5.2:+1541095 | None:intergenic |
| GATCAGGGAGGGTTACGGAA+GGG | 0.584300 | 5.2:+1541276 | None:intergenic |
| GTTAAGGTTAAGGCGATGAA+AGG | 0.589838 | 5.2:-1540726 | MS.gene21793:CDS |
| AACAGCTTATCGCTCCACAA+AGG | 0.590351 | 5.2:-1541393 | MS.gene21793:CDS |
| GAGTCTCATCAAAGGAAGGA+CGG | 0.590701 | 5.2:-1540957 | MS.gene21793:CDS |
| TTCAGATTAGTAAGAACAAG+CGG | 0.592064 | 5.2:-1540234 | MS.gene21793:intron |
| AAGCTGTTTCGAGGGAGCAA+GGG | 0.594853 | 5.2:+1541408 | None:intergenic |
| AATGGTGAAATCACGGAGGA+GGG | 0.595264 | 5.2:+1541496 | None:intergenic |
| ATGCATCTTAAAATTGGCGA+AGG | 0.598140 | 5.2:-1540846 | MS.gene21793:CDS |
| ACGCGAAGAGGAGCGTCAGA+GGG | 0.600539 | 5.2:-1540982 | MS.gene21793:CDS |
| CTGCGAAGACTGTGAAGCAG+TGG | 0.602270 | 5.2:-1540366 | MS.gene21793:CDS |
| AACGCGAAGAGGAGCGTCAG+AGG | 0.606471 | 5.2:-1540983 | MS.gene21793:CDS |
| GAGATATTCAATTGAATCGG+TGG | 0.607369 | 5.2:+1541214 | None:intergenic |
| ACGGGTTAGTGGCTAAGAGT+AGG | 0.611770 | 5.2:-1540938 | MS.gene21793:CDS |
| TGCGGCTACTAAACGCGAAG+AGG | 0.613310 | 5.2:-1540994 | MS.gene21793:CDS |
| AGAGATTCACGATCCTTGAG+TGG | 0.613773 | 5.2:+1541056 | None:intergenic |
| AACAGCTGAGAAGCCACTCA+AGG | 0.614658 | 5.2:-1541069 | MS.gene21793:CDS |
| GGCGGAGTCTCATCAAAGGA+AGG | 0.617592 | 5.2:-1540961 | MS.gene21793:CDS |
| AACGGAAGTTACCGTTGAGA+CGG | 0.627855 | 5.2:+1541450 | None:intergenic |
| GTGGAATGTGAAGATTATCT+CGG | 0.629342 | 5.2:-1540347 | MS.gene21793:intron |
| GCCTTAACCTTAACATCAGT+AGG | 0.634280 | 5.2:+1540735 | None:intergenic |
| CTAGGGTTTCGAGAGTGTAG+CGG | 0.634520 | 5.2:+1541366 | None:intergenic |
| TGTTTCGAGGGAGCAAGGGA+AGG | 0.637187 | 5.2:+1541412 | None:intergenic |
| ATAAGTGTCTGAAAAGCACT+CGG | 0.638006 | 5.2:+1540804 | None:intergenic |
| GAACAAGCGGCATCAAGACA+GGG | 0.639576 | 5.2:-1540221 | MS.gene21793:CDS |
| AGAGGGCGGAGTCTCATCAA+AGG | 0.643681 | 5.2:-1540965 | MS.gene21793:CDS |
| GGAGCGATAAGCTGTTTCGA+GGG | 0.662749 | 5.2:+1541400 | None:intergenic |
| CGGGAATCGAAGGCTGTTCG+GGG | 0.684382 | 5.2:+1541192 | None:intergenic |
| GGATTGGGATCGTGTTGTCG+CGG | 0.703493 | 5.2:-1540604 | MS.gene21793:CDS |
| ATTGATATGAAATCCAACGG+TGG | 0.724969 | 5.2:+1541098 | None:intergenic |
| CTCTAATGGTGAAATCACGG+AGG | 0.766855 | 5.2:+1541492 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACAATCAAAATAAAA+TGG | + | chr5.2:1541197-1541216 | None:intergenic | 10.0% |
| !! | TATTACTATCTATAATGTTA+AGG | - | chr5.2:1540905-1540924 | MS.gene21793:CDS | 15.0% |
| !!! | TAAAGTATTTTGAAAATACT+CGG | + | chr5.2:1540382-1540401 | None:intergenic | 15.0% |
| !! | CAATTCTTAATTATCTTCAA+GGG | - | chr5.2:1540442-1540461 | MS.gene21793:intron | 20.0% |
| !!! | CTATAATGTTAAGGATTTTT+TGG | - | chr5.2:1540914-1540933 | MS.gene21793:CDS | 20.0% |
| ! | ATCATTGATATGAAATCCAA+CGG | + | chr5.2:1540597-1540616 | None:intergenic | 25.0% |
| ! | CCAATTCTTAATTATCTTCA+AGG | - | chr5.2:1540441-1540460 | MS.gene21793:intron | 25.0% |
| ! | CCTAAAATGCATCTTAAAAT+TGG | - | chr5.2:1540837-1540856 | MS.gene21793:CDS | 25.0% |
| ! | CCTTGAAGATAATTAAGAAT+TGG | + | chr5.2:1540444-1540463 | None:intergenic | 25.0% |
| ! | GTGATAATTTCATCTGAATT+AGG | + | chr5.2:1540558-1540577 | None:intergenic | 25.0% |
| !! | ATTTTTGATGTAGTGAACTA+GGG | + | chr5.2:1540343-1540362 | None:intergenic | 25.0% |
| !! | TCGAGATTTTCAATAAAAGT+CGG | - | chr5.2:1541162-1541181 | MS.gene21793:CDS | 25.0% |
| !!! | CCAATTTTAAGATGCATTTT+AGG | + | chr5.2:1540840-1540859 | None:intergenic | 25.0% |
| !!! | TTAAGATGCATTTTAGGTTT+CGG | + | chr5.2:1540834-1540853 | None:intergenic | 25.0% |
| !!! | TTAAGGATTTTTTGGAAGAT+GGG | - | chr5.2:1540922-1540941 | MS.gene21793:CDS | 25.0% |
| !!! | TTTCAAAATACTTTAGCTCT+TGG | - | chr5.2:1540387-1540406 | MS.gene21793:CDS | 25.0% |
| TGTTACTGCTTATGAAGTTA+GGG | - | chr5.2:1541037-1541056 | MS.gene21793:CDS | 30.0% | |
| TTATGTACCTACTGATGTTA+AGG | - | chr5.2:1540947-1540966 | MS.gene21793:CDS | 30.0% | |
| TTCAGATTAGTAAGAACAAG+CGG | - | chr5.2:1541455-1541474 | MS.gene21793:CDS | 30.0% | |
| ! | GATTTTTGATGTAGTGAACT+AGG | + | chr5.2:1540344-1540363 | None:intergenic | 30.0% |
| !!! | CAGTTACTGGATTTTTTATG+CGG | - | chr5.2:1541278-1541297 | MS.gene21793:CDS | 30.0% |
| !!! | GTTAAGGATTTTTTGGAAGA+TGG | - | chr5.2:1540921-1540940 | MS.gene21793:CDS | 30.0% |
| !!! | TAAGAATTGGTTTTCGATCA+GGG | + | chr5.2:1540431-1540450 | None:intergenic | 30.0% |
| !!! | TAAGGATTTTTTGGAAGATG+GGG | - | chr5.2:1540923-1540942 | MS.gene21793:CDS | 30.0% |
| !!! | TTAAGAATTGGTTTTCGATC+AGG | + | chr5.2:1540432-1540451 | None:intergenic | 30.0% |
| !!! | TTTTTGTTTTGGGAAAGGAT+TGG | - | chr5.2:1541108-1541127 | MS.gene21793:CDS | 30.0% |
| ACCTACTGATGTTAAGGTTA+AGG | - | chr5.2:1540953-1540972 | MS.gene21793:CDS | 35.0% | |
| AGTAACTGCAACAATTTGAC+AGG | + | chr5.2:1541266-1541285 | None:intergenic | 35.0% | |
| ATATTCAATTGAATCGGTGG+TGG | + | chr5.2:1540475-1540494 | None:intergenic | 35.0% | |
| ATCTCGACATGATCCTTAAA+AGG | + | chr5.2:1541149-1541168 | None:intergenic | 35.0% | |
| ATGCATCTTAAAATTGGCGA+AGG | - | chr5.2:1540843-1540862 | MS.gene21793:CDS | 35.0% | |
| ATTGATATGAAATCCAACGG+TGG | + | chr5.2:1540594-1540613 | None:intergenic | 35.0% | |
| CTGTTACTGCTTATGAAGTT+AGG | - | chr5.2:1541036-1541055 | MS.gene21793:CDS | 35.0% | |
| GAGATATTCAATTGAATCGG+TGG | + | chr5.2:1540478-1540497 | None:intergenic | 35.0% | |
| GGGGAGATATTCAATTGAAT+CGG | + | chr5.2:1540481-1540500 | None:intergenic | 35.0% | |
| GTAACTGCAACAATTTGACA+GGG | + | chr5.2:1541265-1541284 | None:intergenic | 35.0% | |
| GTGCAGTGTAAGTTAAAAAC+TGG | + | chr5.2:1541416-1541435 | None:intergenic | 35.0% | |
| GTGGAATGTGAAGATTATCT+CGG | - | chr5.2:1541342-1541361 | MS.gene21793:CDS | 35.0% | |
| TAACTGCAACAATTTGACAG+GGG | + | chr5.2:1541264-1541283 | None:intergenic | 35.0% | |
| TGTCAAATTGTTGCAGTTAC+TGG | - | chr5.2:1541265-1541284 | MS.gene21793:CDS | 35.0% | |
| TGTTCAGAAGAAGCTTAGTA+GGG | - | chr5.2:1541007-1541026 | MS.gene21793:CDS | 35.0% | |
| TTCTGAACAGTAACACAATC+CGG | + | chr5.2:1540996-1541015 | None:intergenic | 35.0% | |
| ! | TTTTTACAGCGTGTTAGTTG+CGG | - | chr5.2:1540677-1540696 | MS.gene21793:CDS | 35.0% |
| !! | ATAAGTGTCTGAAAAGCACT+CGG | + | chr5.2:1540888-1540907 | None:intergenic | 35.0% |
| !!! | ATTTTGGTGGTGATGAAATG+GGG | - | chr5.2:1540793-1540812 | MS.gene21793:CDS | 35.0% |
| !!! | GATTTTGGTGGTGATGAAAT+GGG | - | chr5.2:1540792-1540811 | MS.gene21793:CDS | 35.0% |
| !!! | TGATTTTGGTGGTGATGAAA+TGG | - | chr5.2:1540791-1540810 | MS.gene21793:CDS | 35.0% |
| AGTGGCTAAGAGTAGGTTAA+TGG | - | chr5.2:1540758-1540777 | MS.gene21793:CDS | 40.0% | |
| CTGTTCAGAAGAAGCTTAGT+AGG | - | chr5.2:1541006-1541025 | MS.gene21793:CDS | 40.0% | |
| GAATCCGATGAGAATGAGAA+TGG | - | chr5.2:1540161-1540180 | MS.gene21793:CDS | 40.0% | |
| GCACTCGGAACCAAAATAAT+CGG | + | chr5.2:1540873-1540892 | None:intergenic | 40.0% | |
| GCATAGCAGTAGTTAGAACA+AGG | + | chr5.2:1541378-1541397 | None:intergenic | 40.0% | |
| GCCTTAACCTTAACATCAGT+AGG | + | chr5.2:1540957-1540976 | None:intergenic | 40.0% | |
| GGATCCATTCTCATTCTCAT+CGG | + | chr5.2:1540168-1540187 | None:intergenic | 40.0% | |
| GTGGCTAAGAGTAGGTTAAT+GGG | - | chr5.2:1540759-1540778 | MS.gene21793:CDS | 40.0% | |
| GTTAAGGTTAAGGCGATGAA+AGG | - | chr5.2:1540963-1540982 | MS.gene21793:CDS | 40.0% | |
| TGAATTAGAATCACCACCGT+TGG | - | chr5.2:1540578-1540597 | MS.gene21793:CDS | 40.0% | |
| TTGGAGAGAAGAAGGTTCAT+CGG | + | chr5.2:1540520-1540539 | None:intergenic | 40.0% | |
| TTTGTCTAAGTCGCCTCTAA+TGG | + | chr5.2:1540214-1540233 | None:intergenic | 40.0% | |
| !! | GAAAATACTCGGTGTGTTTG+AGG | + | chr5.2:1540371-1540390 | None:intergenic | 40.0% |
| !! | TAGGAAATTGAGAGTGCTGT+TGG | + | chr5.2:1540539-1540558 | None:intergenic | 40.0% |
| !! | TGTTGTCGCGGTTTTTGTTT+TGG | - | chr5.2:1541097-1541116 | MS.gene21793:CDS | 40.0% |
| !!! | AATTGGTTTTCGATCAGGGA+GGG | + | chr5.2:1540427-1540446 | None:intergenic | 40.0% |
| !!! | ATGGGAAGTGCTGATGATTT+TGG | - | chr5.2:1540777-1540796 | MS.gene21793:CDS | 40.0% |
| !!! | CGAAGGTGTTCCGATTATTT+TGG | - | chr5.2:1540860-1540879 | MS.gene21793:CDS | 40.0% |
| !!! | GTTCAAGGATTGGCCTTTTA+AGG | - | chr5.2:1541133-1541152 | MS.gene21793:CDS | 40.0% |
| !!! | GTTGTCGCGGTTTTTGTTTT+GGG | - | chr5.2:1541098-1541117 | MS.gene21793:CDS | 40.0% |
| AAATCACGGAGGAGGGTTAA+GGG | + | chr5.2:1540189-1540208 | None:intergenic | 45.0% | |
| AACAGCTTATCGCTCCACAA+AGG | - | chr5.2:1540296-1540315 | MS.gene21793:intron | 45.0% | |
| AACGGAAGTTACCGTTGAGA+CGG | + | chr5.2:1540242-1540261 | None:intergenic | 45.0% | |
| AATGGTGAAATCACGGAGGA+GGG | + | chr5.2:1540196-1540215 | None:intergenic | 45.0% | |
| ACAGCTTATCGCTCCACAAA+GGG | - | chr5.2:1540297-1540316 | MS.gene21793:intron | 45.0% | |
| AGAGATTCACGATCCTTGAG+TGG | + | chr5.2:1540636-1540655 | None:intergenic | 45.0% | |
| AGGTGTAATCTTCGCCGAAA+CGG | + | chr5.2:1540260-1540279 | None:intergenic | 45.0% | |
| AGTCTCATCAAAGGAAGGAC+GGG | - | chr5.2:1540733-1540752 | MS.gene21793:CDS | 45.0% | |
| CGCCTCTAATGGTGAAATCA+CGG | + | chr5.2:1540203-1540222 | None:intergenic | 45.0% | |
| CTCAACGGTAACTTCCGTTT+CGG | - | chr5.2:1540243-1540262 | MS.gene21793:intron | 45.0% | |
| CTCCGTGATTTCACCATTAG+AGG | - | chr5.2:1540198-1540217 | MS.gene21793:CDS | 45.0% | |
| CTCTAATGGTGAAATCACGG+AGG | + | chr5.2:1540200-1540219 | None:intergenic | 45.0% | |
| GACAAAATCGTCCGTCTCAA+CGG | - | chr5.2:1540228-1540247 | MS.gene21793:CDS | 45.0% | |
| GAGTCTCATCAAAGGAAGGA+CGG | - | chr5.2:1540732-1540751 | MS.gene21793:CDS | 45.0% | |
| TAATGGTGAAATCACGGAGG+AGG | + | chr5.2:1540197-1540216 | None:intergenic | 45.0% | |
| TGCGCTTAAACCTGAGGATT+GGG | - | chr5.2:1541070-1541089 | MS.gene21793:CDS | 45.0% | |
| TGGAGAGAAGAAGGTTCATC+GGG | + | chr5.2:1540519-1540538 | None:intergenic | 45.0% | |
| ! | AGGATTGGCAGTTCAAGGAT+TGG | - | chr5.2:1541123-1541142 | MS.gene21793:CDS | 45.0% |
| ! | TTTTCGATCAGGGAGGGTTA+CGG | + | chr5.2:1540421-1540440 | None:intergenic | 45.0% |
| !!! | CGCGGTTTTTGTTTTGGGAA+AGG | - | chr5.2:1541103-1541122 | MS.gene21793:CDS | 45.0% |
| !!! | GAATTGGTTTTCGATCAGGG+AGG | + | chr5.2:1540428-1540447 | None:intergenic | 45.0% |
| !!! | GGAAGTGCTGATGATTTTGG+TGG | - | chr5.2:1540780-1540799 | MS.gene21793:CDS | 45.0% |
| AACAGCTGAGAAGCCACTCA+AGG | - | chr5.2:1540620-1540639 | MS.gene21793:CDS | 50.0% | |
| ACAACACGATCCCAATCCTC+AGG | + | chr5.2:1541083-1541102 | None:intergenic | 50.0% | |
| AGAACAAGCGGCATCAAGAC+AGG | - | chr5.2:1541467-1541486 | MS.gene21793:CDS | 50.0% | |
| AGTGTAGCGGTTTCCCTTTG+TGG | + | chr5.2:1540313-1540332 | None:intergenic | 50.0% | |
| ATCGGGAATCGAAGGCTGTT+CGG | + | chr5.2:1540502-1540521 | None:intergenic | 50.0% | |
| CTGCGCTTAAACCTGAGGAT+TGG | - | chr5.2:1541069-1541088 | MS.gene21793:CDS | 50.0% | |
| GAAATCACGGAGGAGGGTTA+AGG | + | chr5.2:1540190-1540209 | None:intergenic | 50.0% | |
| GAACAAGCGGCATCAAGACA+GGG | - | chr5.2:1541468-1541487 | MS.gene21793:CDS | 50.0% | |
| GAAGGTTCATCGGGAATCGA+AGG | + | chr5.2:1540510-1540529 | None:intergenic | 50.0% | |
| TCCTCAGGTTTAAGCGCAGA+AGG | + | chr5.2:1541068-1541087 | None:intergenic | 50.0% | |
| ! | AAGCTGTTTCGAGGGAGCAA+GGG | + | chr5.2:1540284-1540303 | None:intergenic | 50.0% |
| ! | CTAGGGTTTCGAGAGTGTAG+CGG | + | chr5.2:1540326-1540345 | None:intergenic | 50.0% |
| ! | GAGTGCTGTTGGAGAGAAGA+AGG | + | chr5.2:1540528-1540547 | None:intergenic | 50.0% |
| ! | GGAGCGATAAGCTGTTTCGA+GGG | + | chr5.2:1540292-1540311 | None:intergenic | 50.0% |
| ! | GGGAAAGGATTGGCAGTTCA+AGG | - | chr5.2:1541118-1541137 | MS.gene21793:CDS | 50.0% |
| ! | TAAGCTGTTTCGAGGGAGCA+AGG | + | chr5.2:1540285-1540304 | None:intergenic | 50.0% |
| ! | TGGAGCGATAAGCTGTTTCG+AGG | + | chr5.2:1540293-1540312 | None:intergenic | 50.0% |
| !! | ACGGGTTAGTGGCTAAGAGT+AGG | - | chr5.2:1540751-1540770 | MS.gene21793:CDS | 50.0% |
| !! | TCAAAGGAAGGACGGGTTAG+TGG | - | chr5.2:1540740-1540759 | MS.gene21793:CDS | 50.0% |
| AGAGGGCGGAGTCTCATCAA+AGG | - | chr5.2:1540724-1540743 | MS.gene21793:CDS | 55.0% | |
| CTGCGAAGACTGTGAAGCAG+TGG | - | chr5.2:1541323-1541342 | MS.gene21793:CDS | 55.0% | |
| GATCAGGGAGGGTTACGGAA+GGG | + | chr5.2:1540416-1540435 | None:intergenic | 55.0% | |
| GCCTTCTGCGCTTAAACCTG+AGG | - | chr5.2:1541064-1541083 | MS.gene21793:CDS | 55.0% | |
| GGATTGGGATCGTGTTGTCG+CGG | - | chr5.2:1541085-1541104 | MS.gene21793:CDS | 55.0% | |
| GGCGGAGTCTCATCAAAGGA+AGG | - | chr5.2:1540728-1540747 | MS.gene21793:CDS | 55.0% | |
| TCAAGACAGGGCTGCAGCAT+TGG | - | chr5.2:1541480-1541499 | MS.gene21793:CDS | 55.0% | |
| TCGGGAATCGAAGGCTGTTC+GGG | + | chr5.2:1540501-1540520 | None:intergenic | 55.0% | |
| TGCGGCTACTAAACGCGAAG+AGG | - | chr5.2:1540695-1540714 | MS.gene21793:CDS | 55.0% | |
| TGTTTCGAGGGAGCAAGGGA+AGG | + | chr5.2:1540280-1540299 | None:intergenic | 55.0% | |
| ! | ATTGGAGGTGTGGGACAGAC+TGG | - | chr5.2:1541498-1541517 | MS.gene21793:CDS | 55.0% |
| !! | GGCGATGAAAGGTGCTAAGC+CGG | - | chr5.2:1540974-1540993 | MS.gene21793:CDS | 55.0% |
| CGATCAGGGAGGGTTACGGA+AGG | + | chr5.2:1540417-1540436 | None:intergenic | 60.0% | |
| CGGGAATCGAAGGCTGTTCG+GGG | + | chr5.2:1540500-1540519 | None:intergenic | 60.0% | |
| ! | AGACAGGGCTGCAGCATTGG+AGG | - | chr5.2:1541483-1541502 | MS.gene21793:CDS | 60.0% |
| ! | GGCTGCAGCATTGGAGGTGT+GGG | - | chr5.2:1541489-1541508 | MS.gene21793:CDS | 60.0% |
| !! | AACGCGAAGAGGAGCGTCAG+AGG | - | chr5.2:1540706-1540725 | MS.gene21793:CDS | 60.0% |
| !! | ACGCGAAGAGGAGCGTCAGA+GGG | - | chr5.2:1540707-1540726 | MS.gene21793:CDS | 60.0% |
| ! | GGGCTGCAGCATTGGAGGTG+TGG | - | chr5.2:1541488-1541507 | MS.gene21793:CDS | 65.0% |
| !! | CGAAGAGGAGCGTCAGAGGG+CGG | - | chr5.2:1540710-1540729 | MS.gene21793:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1540159 | 1541552 | 1540159 | ID=MS.gene21793 |
| chr5.2 | mRNA | 1540159 | 1541552 | 1540159 | ID=MS.gene21793.t1;Parent=MS.gene21793 |
| chr5.2 | exon | 1540532 | 1541552 | 1540532 | ID=MS.gene21793.t1.exon1;Parent=MS.gene21793.t1 |
| chr5.2 | CDS | 1540532 | 1541552 | 1540532 | ID=cds.MS.gene21793.t1;Parent=MS.gene21793.t1 |
| chr5.2 | exon | 1540348 | 1540430 | 1540348 | ID=MS.gene21793.t1.exon2;Parent=MS.gene21793.t1 |
| chr5.2 | CDS | 1540348 | 1540430 | 1540348 | ID=cds.MS.gene21793.t1;Parent=MS.gene21793.t1 |
| chr5.2 | exon | 1540159 | 1540251 | 1540159 | ID=MS.gene21793.t1.exon3;Parent=MS.gene21793.t1 |
| chr5.2 | CDS | 1540159 | 1540251 | 1540159 | ID=cds.MS.gene21793.t1;Parent=MS.gene21793.t1 |
| Gene Sequence |
| Protein sequence |
