Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40494.t1 | XP_003610782.1 | 99 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 2.20E-220 | 774.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40494.t1 | Q9LJ87 | 67.3 | 416 | 110 | 6 | 8 | 398 | 1 | 415 | 1.0e-149 | 531.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40494.t1 | B7FK10 | 99.0 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 1.6e-220 | 774.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77777 | MS.gene40494 | PPI |
| MS.gene40494 | MS.gene75146 | PPI |
| MS.gene40494 | MS.gene74396 | PPI |
| MS.gene78878 | MS.gene40494 | PPI |
| MS.gene52682 | MS.gene40494 | PPI |
| MS.gene40494 | MS.gene59966 | PPI |
| MS.gene046235 | MS.gene40494 | PPI |
| MS.gene87920 | MS.gene40494 | PPI |
| MS.gene016334 | MS.gene40494 | PPI |
| MS.gene47306 | MS.gene40494 | PPI |
| MS.gene40494 | MS.gene018011 | PPI |
| MS.gene40494 | MS.gene59845 | PPI |
| MS.gene037409 | MS.gene40494 | PPI |
| MS.gene006712 | MS.gene40494 | PPI |
| MS.gene40494 | MS.gene59843 | PPI |
| MS.gene40494 | MS.gene90863 | PPI |
| MS.gene95244 | MS.gene40494 | PPI |
| MS.gene40494 | MS.gene055975 | PPI |
| MS.gene063864 | MS.gene40494 | PPI |
| MS.gene74360 | MS.gene40494 | PPI |
| MS.gene045470 | MS.gene40494 | PPI |
| MS.gene04645 | MS.gene40494 | PPI |
| MS.gene40494 | MS.gene55650 | PPI |
| MS.gene058388 | MS.gene40494 | PPI |
| MS.gene40494 | MS.gene49820 | PPI |
| MS.gene40494 | MS.gene060101 | PPI |
| MS.gene016478 | MS.gene40494 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40494.t1 | MTR_5g006960 | 98.995 | 398 | 4 | 0 | 1 | 398 | 1 | 398 | 0.0 | 820 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40494.t1 | AT3G22590 | 67.308 | 416 | 110 | 6 | 8 | 398 | 1 | 415 | 0.0 | 569 |
Find 93 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATAATTTCATCTGAATT+AGG | 0.209278 | 5.3:+1924320 | None:intergenic |
| CGAAGGTGTTCCGATTATTT+TGG | 0.225083 | 5.3:-1924015 | MS.gene40494:CDS |
| CTCCGTGATTTCACCATTAG+AGG | 0.266475 | 5.3:-1924677 | MS.gene40494:CDS |
| TCGGGGATCGAAGGCTGTTC+GGG | 0.270432 | 5.3:+1924377 | None:intergenic |
| AGTTGCTAAGAGTAGGTTAA+TGG | 0.277204 | 5.3:-1924117 | MS.gene40494:CDS |
| CTGTTACTGCTTATGAAGTT+AGG | 0.278775 | 5.3:-1923839 | MS.gene40494:CDS |
| ATGGGAAGTGCTGATGATTT+TGG | 0.292521 | 5.3:-1924098 | MS.gene40494:CDS |
| ATCTCGACATGATCCTTAAA+AGG | 0.296624 | 5.3:+1923729 | None:intergenic |
| ATCGGGGATCGAAGGCTGTT+CGG | 0.335598 | 5.3:+1924376 | None:intergenic |
| TTTCAAAATACTTTAGCTCT+TGG | 0.359318 | 5.3:-1924488 | MS.gene40494:CDS |
| TTATGTACCTACTGATGTTA+AGG | 0.369770 | 5.3:-1923928 | MS.gene40494:CDS |
| CCTTGAAGATAGTTCAGAAT+TGG | 0.369822 | 5.3:+1924434 | None:intergenic |
| CCTAAAATGCATCTTAAAAT+CGG | 0.374053 | 5.3:-1924038 | MS.gene40494:CDS |
| GAAATCACGGAGGAGGGTTA+AGG | 0.375174 | 5.3:+1924688 | None:intergenic |
| TATTACTATCTATAATGTTA+AGG | 0.376267 | 5.3:-1923970 | MS.gene40494:CDS |
| CTGTTCAGAAGAAGCTTAGT+AGG | 0.378789 | 5.3:-1923869 | MS.gene40494:CDS |
| TCAAGACAGGGCTGCGGCAT+TGG | 0.380453 | 5.3:-1923397 | MS.gene40494:CDS |
| GTTGCTAAGAGTAGGTTAAT+GGG | 0.397994 | 5.3:-1924116 | MS.gene40494:CDS |
| TGCGCTTAAACCTGAGGATT+GGG | 0.400010 | 5.3:-1923805 | MS.gene40494:CDS |
| CTCAACGGTAACTTCCGTTT+CGG | 0.409085 | 5.3:-1924632 | MS.gene40494:CDS |
| TTTGTCTAAGTCGCCTCTAA+TGG | 0.409790 | 5.3:+1924664 | None:intergenic |
| CCAATTCTGAACTATCTTCA+AGG | 0.421298 | 5.3:-1924434 | MS.gene40494:CDS |
| GGGAAAGGATTGGCAGTTCA+AGG | 0.438397 | 5.3:-1923757 | MS.gene40494:CDS |
| GGCTGCGGCATTGGAGGTGT+GGG | 0.440734 | 5.3:-1923388 | MS.gene40494:CDS |
| GAAAATACTCGGCGTGTTTG+AGG | 0.447850 | 5.3:+1924507 | None:intergenic |
| GAGTGCTGTTGGAGAGAAGA+AGG | 0.449313 | 5.3:+1924350 | None:intergenic |
| GGGCTGCGGCATTGGAGGTG+TGG | 0.449671 | 5.3:-1923389 | MS.gene40494:CDS |
| TGTTACTGCTTATGAAGTTA+GGG | 0.450144 | 5.3:-1923838 | MS.gene40494:CDS |
| GCACTCGGAACCAAAATAAT+CGG | 0.451402 | 5.3:+1924005 | None:intergenic |
| CTGCGCTTAAACCTGAGGAT+TGG | 0.455759 | 5.3:-1923806 | MS.gene40494:CDS |
| ACCTACTGATGTTAAGGTTA+AGG | 0.458526 | 5.3:-1923922 | MS.gene40494:CDS |
| TAGGAAATTGAGAGTGCTGT+TGG | 0.459018 | 5.3:+1924339 | None:intergenic |
| AGAACAAGCGGCATCAAGAC+AGG | 0.461687 | 5.3:-1923410 | MS.gene40494:CDS |
| GACAAAATCGTGCGTCTCAA+CGG | 0.466820 | 5.3:-1924647 | MS.gene40494:CDS |
| TTCTGAACAGTAACACAATC+CGG | 0.474450 | 5.3:+1923882 | None:intergenic |
| TGGAGAGAAGAAGGTTCATC+GGG | 0.475113 | 5.3:+1924359 | None:intergenic |
| AGTGTAGCGGTTTCCCTTTG+TGG | 0.475995 | 5.3:+1924565 | None:intergenic |
| AAATCACGGAGGAGGGTTAA+GGG | 0.487725 | 5.3:+1924689 | None:intergenic |
| GGCGATGAAAGGTGCTAAGC+CGG | 0.488489 | 5.3:-1923901 | MS.gene40494:CDS |
| AGACAGGGCTGCGGCATTGG+AGG | 0.490687 | 5.3:-1923394 | MS.gene40494:CDS |
| ATTGGAGGTGTGGGACAGAC+TGG | 0.497768 | 5.3:-1923379 | MS.gene40494:CDS |
| ACAGCTTATCGCTCCACAAA+GGG | 0.505860 | 5.3:-1924578 | MS.gene40494:CDS |
| GGGGAGATATTCAATTGAAT+CGG | 0.511278 | 5.3:+1924397 | None:intergenic |
| GAATTCGATGAGAATGAGAA+TGG | 0.521206 | 5.3:-1924714 | MS.gene40494:CDS |
| AGGATTGGCAGTTCAAGGAT+TGG | 0.523053 | 5.3:-1923752 | MS.gene40494:CDS |
| AGGTGTAATCTTCGCCGAAA+CGG | 0.539346 | 5.3:+1924618 | None:intergenic |
| TGGAGCGATAAGCTGTTTCG+AGG | 0.540395 | 5.3:+1924585 | None:intergenic |
| TCCTCAGGTTTAAGCGCAGA+AGG | 0.543271 | 5.3:+1923810 | None:intergenic |
| TAATGGTGAAATCACGGAGG+AGG | 0.550611 | 5.3:+1924681 | None:intergenic |
| CAATTCTGAACTATCTTCAA+GGG | 0.552816 | 5.3:-1924433 | MS.gene40494:CDS |
| TTGGAGAGAAGAAGGTTCAT+CGG | 0.553555 | 5.3:+1924358 | None:intergenic |
| TAAGCTGTTTCGAGGGAGCA+AGG | 0.557707 | 5.3:+1924593 | None:intergenic |
| TGAATTAGAATCACCACCGT+TGG | 0.559331 | 5.3:-1924297 | MS.gene40494:CDS |
| CGATCAGGGAGGGTTACGGA+AGG | 0.560319 | 5.3:+1924461 | None:intergenic |
| TGTTCAGAAGAAGCTTAGTA+GGG | 0.562083 | 5.3:-1923868 | MS.gene40494:CDS |
| CGCCTCTAATGGTGAAATCA+CGG | 0.562145 | 5.3:+1924675 | None:intergenic |
| GAAGGTTCATCGGGGATCGA+AGG | 0.564042 | 5.3:+1924368 | None:intergenic |
| GCCTTCTGCGCTTAAACCTG+AGG | 0.566756 | 5.3:-1923811 | MS.gene40494:CDS |
| ACAACACGATCCCAATCCTC+AGG | 0.568851 | 5.3:+1923795 | None:intergenic |
| ATATTCAATTGAATCGGTGG+TGG | 0.575653 | 5.3:+1924403 | None:intergenic |
| GAGTCTCATCAAAGGAAAGA+CGG | 0.577094 | 5.3:-1924143 | MS.gene40494:CDS |
| AGTCTCATCAAAGGAAAGAC+GGG | 0.577589 | 5.3:-1924142 | MS.gene40494:CDS |
| CGAAGAGGAGCGTCAGAGGG+CGG | 0.580692 | 5.3:-1924165 | MS.gene40494:CDS |
| ATCATTGATATGAAATCCAA+CGG | 0.584020 | 5.3:+1924281 | None:intergenic |
| GATCAGGGAGGGTTACGGAA+GGG | 0.584300 | 5.3:+1924462 | None:intergenic |
| GCGGCATCAAGACAGGGCTG+CGG | 0.587480 | 5.3:-1923403 | MS.gene40494:CDS |
| GTTAAGGTTAAGGCGATGAA+AGG | 0.589838 | 5.3:-1923912 | MS.gene40494:CDS |
| AACAGCTTATCGCTCCACAA+AGG | 0.590351 | 5.3:-1924579 | MS.gene40494:CDS |
| TTCAGATTAGTAAGAACAAG+CGG | 0.592064 | 5.3:-1923422 | MS.gene40494:intron |
| AAGCTGTTTCGAGGGAGCAA+GGG | 0.594853 | 5.3:+1924594 | None:intergenic |
| AATGGTGAAATCACGGAGGA+GGG | 0.595264 | 5.3:+1924682 | None:intergenic |
| ACGCGAAGAGGAGCGTCAGA+GGG | 0.600539 | 5.3:-1924168 | MS.gene40494:CDS |
| ATGCATCTTAAAATCGGCGA+AGG | 0.600579 | 5.3:-1924032 | MS.gene40494:CDS |
| ACGGGTTAGTTGCTAAGAGT+AGG | 0.600680 | 5.3:-1924124 | MS.gene40494:CDS |
| CTGCGAAGACTGTGAAGCAG+TGG | 0.602270 | 5.3:-1923552 | MS.gene40494:CDS |
| AACGCGAAGAGGAGCGTCAG+AGG | 0.606471 | 5.3:-1924169 | MS.gene40494:CDS |
| GAGATATTCAATTGAATCGG+TGG | 0.607369 | 5.3:+1924400 | None:intergenic |
| TGCGGCTACTAAACGCGAAG+AGG | 0.613310 | 5.3:-1924180 | MS.gene40494:CDS |
| AGAGATTCACGATCCTTGAG+TGG | 0.613773 | 5.3:+1924242 | None:intergenic |
| AACAGCTGAGAAGCCACTCA+AGG | 0.614658 | 5.3:-1924255 | MS.gene40494:CDS |
| GTGGAATGTGAAGATTATCT+CGG | 0.629342 | 5.3:-1923533 | MS.gene40494:intron |
| GCCTTAACCTTAACATCAGT+AGG | 0.634280 | 5.3:+1923921 | None:intergenic |
| CTAGGGTTTCGAGAGTGTAG+CGG | 0.634520 | 5.3:+1924552 | None:intergenic |
| TGTTTCGAGGGAGCAAGGGA+AGG | 0.637187 | 5.3:+1924598 | None:intergenic |
| ATAAGTGTCTGAAAAGCACT+CGG | 0.638006 | 5.3:+1923990 | None:intergenic |
| GAACAAGCGGCATCAAGACA+GGG | 0.639576 | 5.3:-1923409 | MS.gene40494:CDS |
| CGGGGATCGAAGGCTGTTCG+GGG | 0.642909 | 5.3:+1924378 | None:intergenic |
| AGAGGGCGGAGTCTCATCAA+AGG | 0.643681 | 5.3:-1924151 | MS.gene40494:CDS |
| GGAGCGATAAGCTGTTTCGA+GGG | 0.662749 | 5.3:+1924586 | None:intergenic |
| GGATTGGGATCGTGTTGTCG+CGG | 0.703493 | 5.3:-1923790 | MS.gene40494:CDS |
| ATTGATATGAAATCCAACGG+TGG | 0.724969 | 5.3:+1924284 | None:intergenic |
| CTCTAATGGTGAAATCACGG+AGG | 0.766855 | 5.3:+1924678 | None:intergenic |
| GGAGAGAAGAAGGTTCATCG+GGG | 0.783983 | 5.3:+1924360 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACAATCAAAATAAAA+TGG | + | chr5.3:1924385-1924404 | None:intergenic | 10.0% |
| !! | TATTACTATCTATAATGTTA+AGG | - | chr5.3:1924093-1924112 | MS.gene40494:CDS | 15.0% |
| !!! | TAAAGTATTTTGAAAATACT+CGG | + | chr5.3:1923570-1923589 | None:intergenic | 15.0% |
| !!! | CTATAATGTTAAGGATTTTT+TGG | - | chr5.3:1924102-1924121 | MS.gene40494:CDS | 20.0% |
| ! | ATCATTGATATGAAATCCAA+CGG | + | chr5.3:1923785-1923804 | None:intergenic | 25.0% |
| ! | CCTAAAATGCATCTTAAAAT+CGG | - | chr5.3:1924025-1924044 | MS.gene40494:CDS | 25.0% |
| ! | GTGATAATTTCATCTGAATT+AGG | + | chr5.3:1923746-1923765 | None:intergenic | 25.0% |
| !! | ATTTTTGATGTAGTGAACTA+GGG | + | chr5.3:1923531-1923550 | None:intergenic | 25.0% |
| !! | TCGAGATTTTCAATAAAAGT+CGG | - | chr5.3:1924350-1924369 | MS.gene40494:CDS | 25.0% |
| !!! | TTAAGATGCATTTTAGGTTT+CGG | + | chr5.3:1924022-1924041 | None:intergenic | 25.0% |
| !!! | TTAAGGATTTTTTGGAAGAT+GGG | - | chr5.3:1924110-1924129 | MS.gene40494:CDS | 25.0% |
| !!! | TTTCAAAATACTTTAGCTCT+TGG | - | chr5.3:1923575-1923594 | MS.gene40494:CDS | 25.0% |
| CAATTCTGAACTATCTTCAA+GGG | - | chr5.3:1923630-1923649 | MS.gene40494:intron | 30.0% | |
| TGTTACTGCTTATGAAGTTA+GGG | - | chr5.3:1924225-1924244 | MS.gene40494:CDS | 30.0% | |
| TTATGTACCTACTGATGTTA+AGG | - | chr5.3:1924135-1924154 | MS.gene40494:CDS | 30.0% | |
| TTCAGATTAGTAAGAACAAG+CGG | - | chr5.3:1924641-1924660 | MS.gene40494:CDS | 30.0% | |
| ! | GATTTTTGATGTAGTGAACT+AGG | + | chr5.3:1923532-1923551 | None:intergenic | 30.0% |
| !!! | CAGTTACTGGATTTTTTATG+CGG | - | chr5.3:1924466-1924485 | MS.gene40494:CDS | 30.0% |
| !!! | CCGATTTTAAGATGCATTTT+AGG | + | chr5.3:1924028-1924047 | None:intergenic | 30.0% |
| !!! | GTTAAGGATTTTTTGGAAGA+TGG | - | chr5.3:1924109-1924128 | MS.gene40494:CDS | 30.0% |
| !!! | TAAGGATTTTTTGGAAGATG+GGG | - | chr5.3:1924111-1924130 | MS.gene40494:CDS | 30.0% |
| !!! | TTTTTGTTTTGGGAAAGGAT+TGG | - | chr5.3:1924296-1924315 | MS.gene40494:CDS | 30.0% |
| ACCTACTGATGTTAAGGTTA+AGG | - | chr5.3:1924141-1924160 | MS.gene40494:CDS | 35.0% | |
| AGTAACTGCAACAATTTGAC+AGG | + | chr5.3:1924454-1924473 | None:intergenic | 35.0% | |
| AGTTGCTAAGAGTAGGTTAA+TGG | - | chr5.3:1923946-1923965 | MS.gene40494:CDS | 35.0% | |
| ATATTCAATTGAATCGGTGG+TGG | + | chr5.3:1923663-1923682 | None:intergenic | 35.0% | |
| ATCTCGACATGATCCTTAAA+AGG | + | chr5.3:1924337-1924356 | None:intergenic | 35.0% | |
| ATTGATATGAAATCCAACGG+TGG | + | chr5.3:1923782-1923801 | None:intergenic | 35.0% | |
| CCAATTCTGAACTATCTTCA+AGG | - | chr5.3:1923629-1923648 | MS.gene40494:intron | 35.0% | |
| CCTTGAAGATAGTTCAGAAT+TGG | + | chr5.3:1923632-1923651 | None:intergenic | 35.0% | |
| CTGTTACTGCTTATGAAGTT+AGG | - | chr5.3:1924224-1924243 | MS.gene40494:CDS | 35.0% | |
| GAATTCGATGAGAATGAGAA+TGG | - | chr5.3:1923349-1923368 | MS.gene40494:CDS | 35.0% | |
| GAGATATTCAATTGAATCGG+TGG | + | chr5.3:1923666-1923685 | None:intergenic | 35.0% | |
| GGGGAGATATTCAATTGAAT+CGG | + | chr5.3:1923669-1923688 | None:intergenic | 35.0% | |
| GTAACTGCAACAATTTGACA+GGG | + | chr5.3:1924453-1924472 | None:intergenic | 35.0% | |
| GTGCAGTGTAAGTTAAAAAC+TGG | + | chr5.3:1924604-1924623 | None:intergenic | 35.0% | |
| GTGGAATGTGAAGATTATCT+CGG | - | chr5.3:1924530-1924549 | MS.gene40494:CDS | 35.0% | |
| GTTGCTAAGAGTAGGTTAAT+GGG | - | chr5.3:1923947-1923966 | MS.gene40494:CDS | 35.0% | |
| TAACTGCAACAATTTGACAG+GGG | + | chr5.3:1924452-1924471 | None:intergenic | 35.0% | |
| TGTCAAATTGTTGCAGTTAC+TGG | - | chr5.3:1924453-1924472 | MS.gene40494:CDS | 35.0% | |
| TGTTCAGAAGAAGCTTAGTA+GGG | - | chr5.3:1924195-1924214 | MS.gene40494:CDS | 35.0% | |
| TTCTGAACAGTAACACAATC+CGG | + | chr5.3:1924184-1924203 | None:intergenic | 35.0% | |
| ! | TTTTTACAGCGTGTTAGTTG+CGG | - | chr5.3:1923865-1923884 | MS.gene40494:CDS | 35.0% |
| !! | ATAAGTGTCTGAAAAGCACT+CGG | + | chr5.3:1924076-1924095 | None:intergenic | 35.0% |
| !!! | ATTTTGGTGGTGATGAAATG+GGG | - | chr5.3:1923981-1924000 | MS.gene40494:CDS | 35.0% |
| !!! | GATTTTGGTGGTGATGAAAT+GGG | - | chr5.3:1923980-1923999 | MS.gene40494:CDS | 35.0% |
| !!! | TCAGAATTGGTTTTCGATCA+GGG | + | chr5.3:1923619-1923638 | None:intergenic | 35.0% |
| !!! | TGATTTTGGTGGTGATGAAA+TGG | - | chr5.3:1923979-1923998 | MS.gene40494:CDS | 35.0% |
| !!! | TTCAGAATTGGTTTTCGATC+AGG | + | chr5.3:1923620-1923639 | None:intergenic | 35.0% |
| AGTCTCATCAAAGGAAAGAC+GGG | - | chr5.3:1923921-1923940 | MS.gene40494:CDS | 40.0% | |
| ATGCATCTTAAAATCGGCGA+AGG | - | chr5.3:1924031-1924050 | MS.gene40494:CDS | 40.0% | |
| CTGTTCAGAAGAAGCTTAGT+AGG | - | chr5.3:1924194-1924213 | MS.gene40494:CDS | 40.0% | |
| GAGTCTCATCAAAGGAAAGA+CGG | - | chr5.3:1923920-1923939 | MS.gene40494:CDS | 40.0% | |
| GCACTCGGAACCAAAATAAT+CGG | + | chr5.3:1924061-1924080 | None:intergenic | 40.0% | |
| GCATAGCAGTAGTTAGAACA+AGG | + | chr5.3:1924566-1924585 | None:intergenic | 40.0% | |
| GCCTTAACCTTAACATCAGT+AGG | + | chr5.3:1924145-1924164 | None:intergenic | 40.0% | |
| GTTAAGGTTAAGGCGATGAA+AGG | - | chr5.3:1924151-1924170 | MS.gene40494:CDS | 40.0% | |
| TGAATTAGAATCACCACCGT+TGG | - | chr5.3:1923766-1923785 | MS.gene40494:CDS | 40.0% | |
| TTGGAGAGAAGAAGGTTCAT+CGG | + | chr5.3:1923708-1923727 | None:intergenic | 40.0% | |
| TTTGTCTAAGTCGCCTCTAA+TGG | + | chr5.3:1923402-1923421 | None:intergenic | 40.0% | |
| !! | TAGGAAATTGAGAGTGCTGT+TGG | + | chr5.3:1923727-1923746 | None:intergenic | 40.0% |
| !! | TGTTGTCGCGGTTTTTGTTT+TGG | - | chr5.3:1924285-1924304 | MS.gene40494:CDS | 40.0% |
| !!! | AATTGGTTTTCGATCAGGGA+GGG | + | chr5.3:1923615-1923634 | None:intergenic | 40.0% |
| !!! | ATGGGAAGTGCTGATGATTT+TGG | - | chr5.3:1923965-1923984 | MS.gene40494:CDS | 40.0% |
| !!! | CGAAGGTGTTCCGATTATTT+TGG | - | chr5.3:1924048-1924067 | MS.gene40494:CDS | 40.0% |
| !!! | GTTCAAGGATTGGCCTTTTA+AGG | - | chr5.3:1924321-1924340 | MS.gene40494:CDS | 40.0% |
| !!! | GTTGTCGCGGTTTTTGTTTT+GGG | - | chr5.3:1924286-1924305 | MS.gene40494:CDS | 40.0% |
| AAATCACGGAGGAGGGTTAA+GGG | + | chr5.3:1923377-1923396 | None:intergenic | 45.0% | |
| AACAGCTTATCGCTCCACAA+AGG | - | chr5.3:1923484-1923503 | MS.gene40494:intron | 45.0% | |
| AATGGTGAAATCACGGAGGA+GGG | + | chr5.3:1923384-1923403 | None:intergenic | 45.0% | |
| ACAGCTTATCGCTCCACAAA+GGG | - | chr5.3:1923485-1923504 | MS.gene40494:intron | 45.0% | |
| AGAGATTCACGATCCTTGAG+TGG | + | chr5.3:1923824-1923843 | None:intergenic | 45.0% | |
| AGGTGTAATCTTCGCCGAAA+CGG | + | chr5.3:1923448-1923467 | None:intergenic | 45.0% | |
| CGCCTCTAATGGTGAAATCA+CGG | + | chr5.3:1923391-1923410 | None:intergenic | 45.0% | |
| CTCAACGGTAACTTCCGTTT+CGG | - | chr5.3:1923431-1923450 | MS.gene40494:intron | 45.0% | |
| CTCCGTGATTTCACCATTAG+AGG | - | chr5.3:1923386-1923405 | MS.gene40494:CDS | 45.0% | |
| CTCTAATGGTGAAATCACGG+AGG | + | chr5.3:1923388-1923407 | None:intergenic | 45.0% | |
| GAAAATACTCGGCGTGTTTG+AGG | + | chr5.3:1923559-1923578 | None:intergenic | 45.0% | |
| GACAAAATCGTGCGTCTCAA+CGG | - | chr5.3:1923416-1923435 | MS.gene40494:CDS | 45.0% | |
| TAATGGTGAAATCACGGAGG+AGG | + | chr5.3:1923385-1923404 | None:intergenic | 45.0% | |
| TGCGCTTAAACCTGAGGATT+GGG | - | chr5.3:1924258-1924277 | MS.gene40494:CDS | 45.0% | |
| TGGAGAGAAGAAGGTTCATC+GGG | + | chr5.3:1923707-1923726 | None:intergenic | 45.0% | |
| ! | AGGATTGGCAGTTCAAGGAT+TGG | - | chr5.3:1924311-1924330 | MS.gene40494:CDS | 45.0% |
| ! | TTTTCGATCAGGGAGGGTTA+CGG | + | chr5.3:1923609-1923628 | None:intergenic | 45.0% |
| !! | ACGGGTTAGTTGCTAAGAGT+AGG | - | chr5.3:1923939-1923958 | MS.gene40494:CDS | 45.0% |
| !!! | CGCGGTTTTTGTTTTGGGAA+AGG | - | chr5.3:1924291-1924310 | MS.gene40494:CDS | 45.0% |
| !!! | GAATTGGTTTTCGATCAGGG+AGG | + | chr5.3:1923616-1923635 | None:intergenic | 45.0% |
| !!! | GGAAGTGCTGATGATTTTGG+TGG | - | chr5.3:1923968-1923987 | MS.gene40494:CDS | 45.0% |
| AACAGCTGAGAAGCCACTCA+AGG | - | chr5.3:1923808-1923827 | MS.gene40494:CDS | 50.0% | |
| ACAACACGATCCCAATCCTC+AGG | + | chr5.3:1924271-1924290 | None:intergenic | 50.0% | |
| AGAACAAGCGGCATCAAGAC+AGG | - | chr5.3:1924653-1924672 | MS.gene40494:CDS | 50.0% | |
| AGTGTAGCGGTTTCCCTTTG+TGG | + | chr5.3:1923501-1923520 | None:intergenic | 50.0% | |
| CTGCGCTTAAACCTGAGGAT+TGG | - | chr5.3:1924257-1924276 | MS.gene40494:CDS | 50.0% | |
| GAAATCACGGAGGAGGGTTA+AGG | + | chr5.3:1923378-1923397 | None:intergenic | 50.0% | |
| GAACAAGCGGCATCAAGACA+GGG | - | chr5.3:1924654-1924673 | MS.gene40494:CDS | 50.0% | |
| GGAGAGAAGAAGGTTCATCG+GGG | + | chr5.3:1923706-1923725 | None:intergenic | 50.0% | |
| TCCTCAGGTTTAAGCGCAGA+AGG | + | chr5.3:1924256-1924275 | None:intergenic | 50.0% | |
| ! | AAGCTGTTTCGAGGGAGCAA+GGG | + | chr5.3:1923472-1923491 | None:intergenic | 50.0% |
| ! | CTAGGGTTTCGAGAGTGTAG+CGG | + | chr5.3:1923514-1923533 | None:intergenic | 50.0% |
| ! | GAGTGCTGTTGGAGAGAAGA+AGG | + | chr5.3:1923716-1923735 | None:intergenic | 50.0% |
| ! | GGAGCGATAAGCTGTTTCGA+GGG | + | chr5.3:1923480-1923499 | None:intergenic | 50.0% |
| ! | GGGAAAGGATTGGCAGTTCA+AGG | - | chr5.3:1924306-1924325 | MS.gene40494:CDS | 50.0% |
| ! | TAAGCTGTTTCGAGGGAGCA+AGG | + | chr5.3:1923473-1923492 | None:intergenic | 50.0% |
| ! | TGGAGCGATAAGCTGTTTCG+AGG | + | chr5.3:1923481-1923500 | None:intergenic | 50.0% |
| AGAGGGCGGAGTCTCATCAA+AGG | - | chr5.3:1923912-1923931 | MS.gene40494:CDS | 55.0% | |
| ATCGGGGATCGAAGGCTGTT+CGG | + | chr5.3:1923690-1923709 | None:intergenic | 55.0% | |
| CTGCGAAGACTGTGAAGCAG+TGG | - | chr5.3:1924511-1924530 | MS.gene40494:CDS | 55.0% | |
| GAAGGTTCATCGGGGATCGA+AGG | + | chr5.3:1923698-1923717 | None:intergenic | 55.0% | |
| GATCAGGGAGGGTTACGGAA+GGG | + | chr5.3:1923604-1923623 | None:intergenic | 55.0% | |
| GCCTTCTGCGCTTAAACCTG+AGG | - | chr5.3:1924252-1924271 | MS.gene40494:CDS | 55.0% | |
| GGATTGGGATCGTGTTGTCG+CGG | - | chr5.3:1924273-1924292 | MS.gene40494:CDS | 55.0% | |
| TGCGGCTACTAAACGCGAAG+AGG | - | chr5.3:1923883-1923902 | MS.gene40494:CDS | 55.0% | |
| TGTTTCGAGGGAGCAAGGGA+AGG | + | chr5.3:1923468-1923487 | None:intergenic | 55.0% | |
| ! | ATTGGAGGTGTGGGACAGAC+TGG | - | chr5.3:1924684-1924703 | MS.gene40494:CDS | 55.0% |
| !! | GGCGATGAAAGGTGCTAAGC+CGG | - | chr5.3:1924162-1924181 | MS.gene40494:CDS | 55.0% |
| CGATCAGGGAGGGTTACGGA+AGG | + | chr5.3:1923605-1923624 | None:intergenic | 60.0% | |
| TCAAGACAGGGCTGCGGCAT+TGG | - | chr5.3:1924666-1924685 | MS.gene40494:CDS | 60.0% | |
| TCGGGGATCGAAGGCTGTTC+GGG | + | chr5.3:1923689-1923708 | None:intergenic | 60.0% | |
| !! | AACGCGAAGAGGAGCGTCAG+AGG | - | chr5.3:1923894-1923913 | MS.gene40494:CDS | 60.0% |
| !! | ACGCGAAGAGGAGCGTCAGA+GGG | - | chr5.3:1923895-1923914 | MS.gene40494:CDS | 60.0% |
| CGGGGATCGAAGGCTGTTCG+GGG | + | chr5.3:1923688-1923707 | None:intergenic | 65.0% | |
| GCGGCATCAAGACAGGGCTG+CGG | - | chr5.3:1924660-1924679 | MS.gene40494:CDS | 65.0% | |
| ! | AGACAGGGCTGCGGCATTGG+AGG | - | chr5.3:1924669-1924688 | MS.gene40494:CDS | 65.0% |
| ! | GGCTGCGGCATTGGAGGTGT+GGG | - | chr5.3:1924675-1924694 | MS.gene40494:CDS | 65.0% |
| !! | CGAAGAGGAGCGTCAGAGGG+CGG | - | chr5.3:1923898-1923917 | MS.gene40494:CDS | 65.0% |
| ! | GGGCTGCGGCATTGGAGGTG+TGG | - | chr5.3:1924674-1924693 | MS.gene40494:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1923347 | 1924738 | 1923347 | ID=MS.gene40494 |
| chr5.3 | mRNA | 1923347 | 1924738 | 1923347 | ID=MS.gene40494.t1;Parent=MS.gene40494 |
| chr5.3 | exon | 1923718 | 1924738 | 1923718 | ID=MS.gene40494.t1.exon1;Parent=MS.gene40494.t1 |
| chr5.3 | CDS | 1923718 | 1924738 | 1923718 | ID=cds.MS.gene40494.t1;Parent=MS.gene40494.t1 |
| chr5.3 | exon | 1923534 | 1923616 | 1923534 | ID=MS.gene40494.t1.exon2;Parent=MS.gene40494.t1 |
| chr5.3 | CDS | 1923534 | 1923616 | 1923534 | ID=cds.MS.gene40494.t1;Parent=MS.gene40494.t1 |
| chr5.3 | exon | 1923347 | 1923439 | 1923347 | ID=MS.gene40494.t1.exon3;Parent=MS.gene40494.t1 |
| chr5.3 | CDS | 1923347 | 1923439 | 1923347 | ID=cds.MS.gene40494.t1;Parent=MS.gene40494.t1 |
| Gene Sequence |
| Protein sequence |
