Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058069.t1 | XP_003610782.1 | 99.2 | 398 | 3 | 0 | 1 | 398 | 1 | 398 | 2.60E-221 | 777.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058069.t1 | Q9LJ87 | 67.3 | 416 | 110 | 6 | 8 | 398 | 1 | 415 | 1.0e-149 | 531.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058069.t1 | B7FK10 | 99.2 | 398 | 3 | 0 | 1 | 398 | 1 | 398 | 1.9e-221 | 777.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77777 | MS.gene058069 | PPI |
| MS.gene058069 | MS.gene063864 | PPI |
| MS.gene52682 | MS.gene058069 | PPI |
| MS.gene058069 | MS.gene055975 | PPI |
| MS.gene058069 | MS.gene78878 | PPI |
| MS.gene058069 | MS.gene018011 | PPI |
| MS.gene87920 | MS.gene058069 | PPI |
| MS.gene016334 | MS.gene058069 | PPI |
| MS.gene47306 | MS.gene058069 | PPI |
| MS.gene058069 | MS.gene59845 | PPI |
| MS.gene058069 | MS.gene90863 | PPI |
| MS.gene006712 | MS.gene058069 | PPI |
| MS.gene058069 | MS.gene49820 | PPI |
| MS.gene95244 | MS.gene058069 | PPI |
| MS.gene058069 | MS.gene75146 | PPI |
| MS.gene058069 | MS.gene04645 | PPI |
| MS.gene74360 | MS.gene058069 | PPI |
| MS.gene058069 | MS.gene55650 | PPI |
| MS.gene058069 | MS.gene59843 | PPI |
| MS.gene045470 | MS.gene058069 | PPI |
| MS.gene058069 | MS.gene59966 | PPI |
| MS.gene058069 | MS.gene046235 | PPI |
| MS.gene058069 | MS.gene060101 | PPI |
| MS.gene058388 | MS.gene058069 | PPI |
| MS.gene058069 | MS.gene74396 | PPI |
| MS.gene058069 | MS.gene037409 | PPI |
| MS.gene016478 | MS.gene058069 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058069.t1 | MTR_5g006960 | 99.246 | 398 | 3 | 0 | 1 | 398 | 1 | 398 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058069.t1 | AT3G22590 | 67.308 | 416 | 110 | 6 | 8 | 398 | 1 | 415 | 0.0 | 568 |
Find 95 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATAATTTCATCTGAATT+AGG | 0.209278 | 5.1:+1587599 | None:intergenic |
| CGAAGGTGTTCCGATTATTT+TGG | 0.225083 | 5.1:-1587294 | MS.gene058069:CDS |
| CTCCGTGATTTCACCATTAG+AGG | 0.266475 | 5.1:-1587956 | MS.gene058069:CDS |
| TCGGGGATCGAAGGCTGTTC+GGG | 0.270432 | 5.1:+1587656 | None:intergenic |
| AGTTGCTAAGAGTAGGTTAA+TGG | 0.277204 | 5.1:-1587396 | MS.gene058069:CDS |
| CTGTTACTGCTTATGAAGTT+AGG | 0.278775 | 5.1:-1587118 | MS.gene058069:CDS |
| ATGGGAAGTGCTGATGATTT+TGG | 0.292521 | 5.1:-1587377 | MS.gene058069:CDS |
| ATCTCGACATGATCCTTAAA+AGG | 0.296624 | 5.1:+1587008 | None:intergenic |
| ATCGGGGATCGAAGGCTGTT+CGG | 0.335598 | 5.1:+1587655 | None:intergenic |
| CCAATTCTTAACTATCTTCA+AGG | 0.358227 | 5.1:-1587713 | MS.gene058069:CDS |
| TTTCAAAATACTTTAGCTCT+TGG | 0.359318 | 5.1:-1587767 | MS.gene058069:CDS |
| CCTTGAAGATAGTTAAGAAT+TGG | 0.360763 | 5.1:+1587713 | None:intergenic |
| TTATGTACCTACTGATGTTA+AGG | 0.369770 | 5.1:-1587207 | MS.gene058069:CDS |
| CCTAAAATGCATCTTAAAAT+CGG | 0.374053 | 5.1:-1587317 | MS.gene058069:CDS |
| GAAATCACGGAGGAGGGTTA+AGG | 0.375174 | 5.1:+1587967 | None:intergenic |
| TATTACTATCTATAATGTTA+AGG | 0.376267 | 5.1:-1587249 | MS.gene058069:CDS |
| CTGTTCAGAAGAAGCTTAGT+AGG | 0.378789 | 5.1:-1587148 | MS.gene058069:CDS |
| TCAAGACAGGGCTGCGGCAT+TGG | 0.380453 | 5.1:-1586676 | MS.gene058069:CDS |
| GTTGCTAAGAGTAGGTTAAT+GGG | 0.397994 | 5.1:-1587395 | MS.gene058069:CDS |
| TGCGCTTAAACCTGAGGATT+GGG | 0.400010 | 5.1:-1587084 | MS.gene058069:CDS |
| CTCAACGGTAACTTCCGTTT+CGG | 0.409085 | 5.1:-1587911 | MS.gene058069:CDS |
| TTTGTCTAAGTCGCCTCTAA+TGG | 0.409790 | 5.1:+1587943 | None:intergenic |
| GGGAAAGGATTGGCAGTTCA+AGG | 0.438397 | 5.1:-1587036 | MS.gene058069:CDS |
| GGCTGCGGCATTGGAGGTGT+GGG | 0.440734 | 5.1:-1586667 | MS.gene058069:CDS |
| GAAAATACTCGGCGTGTTTG+AGG | 0.447850 | 5.1:+1587786 | None:intergenic |
| GAGTGCTGTTGGAGAGAAGA+AGG | 0.449313 | 5.1:+1587629 | None:intergenic |
| GGGCTGCGGCATTGGAGGTG+TGG | 0.449671 | 5.1:-1586668 | MS.gene058069:CDS |
| TGTTACTGCTTATGAAGTTA+GGG | 0.450144 | 5.1:-1587117 | MS.gene058069:CDS |
| GCACTCGGAACCAAAATAAT+CGG | 0.451402 | 5.1:+1587284 | None:intergenic |
| CTGCGCTTAAACCTGAGGAT+TGG | 0.455759 | 5.1:-1587085 | MS.gene058069:CDS |
| ACCTACTGATGTTAAGGTTA+AGG | 0.458526 | 5.1:-1587201 | MS.gene058069:CDS |
| TAGGAAATTGAGAGTGCTGT+TGG | 0.459018 | 5.1:+1587618 | None:intergenic |
| AGAACAAGCGGCATCAAGAC+AGG | 0.461687 | 5.1:-1586689 | MS.gene058069:CDS |
| GACAAAATCGTCCGTCTCAA+CGG | 0.466820 | 5.1:-1587926 | MS.gene058069:CDS |
| TTCTGAACAGTAACACAATC+CGG | 0.474450 | 5.1:+1587161 | None:intergenic |
| TGGAGAGAAGAAGGTTCATC+GGG | 0.475113 | 5.1:+1587638 | None:intergenic |
| AGTGTAGCGGTTTCCCTTTG+TGG | 0.475995 | 5.1:+1587844 | None:intergenic |
| AAATCACGGAGGAGGGTTAA+GGG | 0.487725 | 5.1:+1587968 | None:intergenic |
| GGCGATGAAAGGTGCTAAGC+CGG | 0.488489 | 5.1:-1587180 | MS.gene058069:CDS |
| AGACAGGGCTGCGGCATTGG+AGG | 0.490687 | 5.1:-1586673 | MS.gene058069:CDS |
| ATTGGAGGTGTGGGACAGAC+TGG | 0.497768 | 5.1:-1586658 | MS.gene058069:CDS |
| ACAGCTTATCGCTCCACAAA+GGG | 0.505860 | 5.1:-1587857 | MS.gene058069:CDS |
| GGGGAGATATTCAATTGAAT+CGG | 0.511278 | 5.1:+1587676 | None:intergenic |
| AGGATTGGCAGTTCAAGGAT+TGG | 0.523053 | 5.1:-1587031 | MS.gene058069:CDS |
| CAATTCTTAACTATCTTCAA+GGG | 0.535990 | 5.1:-1587712 | MS.gene058069:CDS |
| AGGTGTAATCTTCGCCGAAA+CGG | 0.539346 | 5.1:+1587897 | None:intergenic |
| GAATCCGATGAGAATGAGAA+TGG | 0.539396 | 5.1:-1587993 | MS.gene058069:CDS |
| TGGAGCGATAAGCTGTTTCG+AGG | 0.540395 | 5.1:+1587864 | None:intergenic |
| TCCTCAGGTTTAAGCGCAGA+AGG | 0.543271 | 5.1:+1587089 | None:intergenic |
| TAATGGTGAAATCACGGAGG+AGG | 0.550611 | 5.1:+1587960 | None:intergenic |
| TTGGAGAGAAGAAGGTTCAT+CGG | 0.553555 | 5.1:+1587637 | None:intergenic |
| TAAGCTGTTTCGAGGGAGCA+AGG | 0.557707 | 5.1:+1587872 | None:intergenic |
| TGAATTAGAATCACCACCGT+TGG | 0.559331 | 5.1:-1587576 | MS.gene058069:CDS |
| CGATCAGGGAGGGTTACGGA+AGG | 0.560319 | 5.1:+1587740 | None:intergenic |
| TGTTCAGAAGAAGCTTAGTA+GGG | 0.562083 | 5.1:-1587147 | MS.gene058069:CDS |
| CGCCTCTAATGGTGAAATCA+CGG | 0.562145 | 5.1:+1587954 | None:intergenic |
| GAAGGTTCATCGGGGATCGA+AGG | 0.564042 | 5.1:+1587647 | None:intergenic |
| GCCTTCTGCGCTTAAACCTG+AGG | 0.566756 | 5.1:-1587090 | MS.gene058069:CDS |
| ACAACACGATCCCAATCCTC+AGG | 0.568851 | 5.1:+1587074 | None:intergenic |
| ATATTCAATTGAATCGGTGG+TGG | 0.575653 | 5.1:+1587682 | None:intergenic |
| GAGTCTCATCAAAGGAAAGA+CGG | 0.577094 | 5.1:-1587422 | MS.gene058069:CDS |
| AGTCTCATCAAAGGAAAGAC+GGG | 0.577589 | 5.1:-1587421 | MS.gene058069:CDS |
| GGATCCATTCTCATTCTCAT+CGG | 0.580362 | 5.1:+1587989 | None:intergenic |
| CGAAGAGGAGCGTCAGAGGG+CGG | 0.580692 | 5.1:-1587444 | MS.gene058069:CDS |
| ATCATTGATATGAAATCCAA+CGG | 0.584020 | 5.1:+1587560 | None:intergenic |
| GATCAGGGAGGGTTACGGAA+GGG | 0.584300 | 5.1:+1587741 | None:intergenic |
| GCGGCATCAAGACAGGGCTG+CGG | 0.587480 | 5.1:-1586682 | MS.gene058069:CDS |
| GTTAAGGTTAAGGCGATGAA+AGG | 0.589838 | 5.1:-1587191 | MS.gene058069:CDS |
| AACAGCTTATCGCTCCACAA+AGG | 0.590351 | 5.1:-1587858 | MS.gene058069:CDS |
| TTCAGATTAGTAAGAACAAG+CGG | 0.592064 | 5.1:-1586701 | MS.gene058069:intron |
| AAGCTGTTTCGAGGGAGCAA+GGG | 0.594853 | 5.1:+1587873 | None:intergenic |
| AATGGTGAAATCACGGAGGA+GGG | 0.595264 | 5.1:+1587961 | None:intergenic |
| ACGCGAAGAGGAGCGTCAGA+GGG | 0.600539 | 5.1:-1587447 | MS.gene058069:CDS |
| ATGCATCTTAAAATCGGCGA+AGG | 0.600579 | 5.1:-1587311 | MS.gene058069:CDS |
| ACGGGTTAGTTGCTAAGAGT+AGG | 0.600680 | 5.1:-1587403 | MS.gene058069:CDS |
| CTGCGAAGACTGTGAAGCAG+TGG | 0.602270 | 5.1:-1586831 | MS.gene058069:CDS |
| AACGCGAAGAGGAGCGTCAG+AGG | 0.606471 | 5.1:-1587448 | MS.gene058069:CDS |
| GAGATATTCAATTGAATCGG+TGG | 0.607369 | 5.1:+1587679 | None:intergenic |
| TGCGGCTACTAAACGCGAAG+AGG | 0.613310 | 5.1:-1587459 | MS.gene058069:CDS |
| AGAGATTCACGATCCTTGAG+TGG | 0.613773 | 5.1:+1587521 | None:intergenic |
| AACAGCTGAGAAGCCACTCA+AGG | 0.614658 | 5.1:-1587534 | MS.gene058069:CDS |
| AACGGAAGTTACCGTTGAGA+CGG | 0.627855 | 5.1:+1587915 | None:intergenic |
| GTGGAATGTGAAGATTATCT+CGG | 0.629342 | 5.1:-1586812 | MS.gene058069:intron |
| GCCTTAACCTTAACATCAGT+AGG | 0.634280 | 5.1:+1587200 | None:intergenic |
| CTAGGGTTTCGAGAGTGTAG+CGG | 0.634520 | 5.1:+1587831 | None:intergenic |
| TGTTTCGAGGGAGCAAGGGA+AGG | 0.637187 | 5.1:+1587877 | None:intergenic |
| ATAAGTGTCTGAAAAGCACT+CGG | 0.638006 | 5.1:+1587269 | None:intergenic |
| GAACAAGCGGCATCAAGACA+GGG | 0.639576 | 5.1:-1586688 | MS.gene058069:CDS |
| CGGGGATCGAAGGCTGTTCG+GGG | 0.642909 | 5.1:+1587657 | None:intergenic |
| AGAGGGCGGAGTCTCATCAA+AGG | 0.643681 | 5.1:-1587430 | MS.gene058069:CDS |
| GGAGCGATAAGCTGTTTCGA+GGG | 0.662749 | 5.1:+1587865 | None:intergenic |
| GGATTGGGATCGTGTTGTCG+CGG | 0.703493 | 5.1:-1587069 | MS.gene058069:CDS |
| ATTGATATGAAATCCAACGG+TGG | 0.724969 | 5.1:+1587563 | None:intergenic |
| CTCTAATGGTGAAATCACGG+AGG | 0.766855 | 5.1:+1587957 | None:intergenic |
| GGAGAGAAGAAGGTTCATCG+GGG | 0.783983 | 5.1:+1587639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACAATCAAAATAAAA+TGG | + | chr5.1:1587664-1587683 | None:intergenic | 10.0% |
| !! | TATTACTATCTATAATGTTA+AGG | - | chr5.1:1587372-1587391 | MS.gene058069:CDS | 15.0% |
| !!! | TAAAGTATTTTGAAAATACT+CGG | + | chr5.1:1586849-1586868 | None:intergenic | 15.0% |
| !!! | CTATAATGTTAAGGATTTTT+TGG | - | chr5.1:1587381-1587400 | MS.gene058069:CDS | 20.0% |
| ! | ATCATTGATATGAAATCCAA+CGG | + | chr5.1:1587064-1587083 | None:intergenic | 25.0% |
| ! | CAATTCTTAACTATCTTCAA+GGG | - | chr5.1:1586909-1586928 | MS.gene058069:intron | 25.0% |
| ! | CCTAAAATGCATCTTAAAAT+CGG | - | chr5.1:1587304-1587323 | MS.gene058069:CDS | 25.0% |
| ! | GTGATAATTTCATCTGAATT+AGG | + | chr5.1:1587025-1587044 | None:intergenic | 25.0% |
| !! | ATTTTTGATGTAGTGAACTA+GGG | + | chr5.1:1586810-1586829 | None:intergenic | 25.0% |
| !! | TCGAGATTTTCAATAAAAGT+CGG | - | chr5.1:1587629-1587648 | MS.gene058069:CDS | 25.0% |
| !!! | TAGTTACTGGATTTTTTATG+CGG | - | chr5.1:1587745-1587764 | MS.gene058069:CDS | 25.0% |
| !!! | TTAAGATGCATTTTAGGTTT+CGG | + | chr5.1:1587301-1587320 | None:intergenic | 25.0% |
| !!! | TTAAGGATTTTTTGGAAGAT+GGG | - | chr5.1:1587389-1587408 | MS.gene058069:CDS | 25.0% |
| !!! | TTTCAAAATACTTTAGCTCT+TGG | - | chr5.1:1586854-1586873 | MS.gene058069:CDS | 25.0% |
| AGTAACTACAACAATTTGAC+AGG | + | chr5.1:1587733-1587752 | None:intergenic | 30.0% | |
| CCAATTCTTAACTATCTTCA+AGG | - | chr5.1:1586908-1586927 | MS.gene058069:intron | 30.0% | |
| CCTTGAAGATAGTTAAGAAT+TGG | + | chr5.1:1586911-1586930 | None:intergenic | 30.0% | |
| GTAACTACAACAATTTGACA+GGG | + | chr5.1:1587732-1587751 | None:intergenic | 30.0% | |
| TAACTACAACAATTTGACAG+GGG | + | chr5.1:1587731-1587750 | None:intergenic | 30.0% | |
| TGTCAAATTGTTGTAGTTAC+TGG | - | chr5.1:1587732-1587751 | MS.gene058069:CDS | 30.0% | |
| TGTTACTGCTTATGAAGTTA+GGG | - | chr5.1:1587504-1587523 | MS.gene058069:CDS | 30.0% | |
| TTATGTACCTACTGATGTTA+AGG | - | chr5.1:1587414-1587433 | MS.gene058069:CDS | 30.0% | |
| TTCAGATTAGTAAGAACAAG+CGG | - | chr5.1:1587920-1587939 | MS.gene058069:CDS | 30.0% | |
| ! | GATTTTTGATGTAGTGAACT+AGG | + | chr5.1:1586811-1586830 | None:intergenic | 30.0% |
| !!! | CCGATTTTAAGATGCATTTT+AGG | + | chr5.1:1587307-1587326 | None:intergenic | 30.0% |
| !!! | GTTAAGGATTTTTTGGAAGA+TGG | - | chr5.1:1587388-1587407 | MS.gene058069:CDS | 30.0% |
| !!! | TAAGAATTGGTTTTCGATCA+GGG | + | chr5.1:1586898-1586917 | None:intergenic | 30.0% |
| !!! | TAAGGATTTTTTGGAAGATG+GGG | - | chr5.1:1587390-1587409 | MS.gene058069:CDS | 30.0% |
| !!! | TTAAGAATTGGTTTTCGATC+AGG | + | chr5.1:1586899-1586918 | None:intergenic | 30.0% |
| !!! | TTTTTGTTTTGGGAAAGGAT+TGG | - | chr5.1:1587575-1587594 | MS.gene058069:CDS | 30.0% |
| ACCTACTGATGTTAAGGTTA+AGG | - | chr5.1:1587420-1587439 | MS.gene058069:CDS | 35.0% | |
| AGTTGCTAAGAGTAGGTTAA+TGG | - | chr5.1:1587225-1587244 | MS.gene058069:CDS | 35.0% | |
| ATATTCAATTGAATCGGTGG+TGG | + | chr5.1:1586942-1586961 | None:intergenic | 35.0% | |
| ATCTCGACATGATCCTTAAA+AGG | + | chr5.1:1587616-1587635 | None:intergenic | 35.0% | |
| ATTGATATGAAATCCAACGG+TGG | + | chr5.1:1587061-1587080 | None:intergenic | 35.0% | |
| CTGTTACTGCTTATGAAGTT+AGG | - | chr5.1:1587503-1587522 | MS.gene058069:CDS | 35.0% | |
| GAGATATTCAATTGAATCGG+TGG | + | chr5.1:1586945-1586964 | None:intergenic | 35.0% | |
| GGGGAGATATTCAATTGAAT+CGG | + | chr5.1:1586948-1586967 | None:intergenic | 35.0% | |
| GTGCAGTGTAAGTTAAAAAC+TGG | + | chr5.1:1587883-1587902 | None:intergenic | 35.0% | |
| GTGGAATGTGAAGATTATCT+CGG | - | chr5.1:1587809-1587828 | MS.gene058069:CDS | 35.0% | |
| GTTGCTAAGAGTAGGTTAAT+GGG | - | chr5.1:1587226-1587245 | MS.gene058069:CDS | 35.0% | |
| TGTTCAGAAGAAGCTTAGTA+GGG | - | chr5.1:1587474-1587493 | MS.gene058069:CDS | 35.0% | |
| TTCTGAACAGTAACACAATC+CGG | + | chr5.1:1587463-1587482 | None:intergenic | 35.0% | |
| ! | TTTTTACAGCGTGTTAGTTG+CGG | - | chr5.1:1587144-1587163 | MS.gene058069:CDS | 35.0% |
| !! | ATAAGTGTCTGAAAAGCACT+CGG | + | chr5.1:1587355-1587374 | None:intergenic | 35.0% |
| !!! | ATTTTGGTGGTGATGAAATG+GGG | - | chr5.1:1587260-1587279 | MS.gene058069:CDS | 35.0% |
| !!! | GATTTTGGTGGTGATGAAAT+GGG | - | chr5.1:1587259-1587278 | MS.gene058069:CDS | 35.0% |
| !!! | TGATTTTGGTGGTGATGAAA+TGG | - | chr5.1:1587258-1587277 | MS.gene058069:CDS | 35.0% |
| AGTCTCATCAAAGGAAAGAC+GGG | - | chr5.1:1587200-1587219 | MS.gene058069:CDS | 40.0% | |
| ATGCATCTTAAAATCGGCGA+AGG | - | chr5.1:1587310-1587329 | MS.gene058069:CDS | 40.0% | |
| CTGTTCAGAAGAAGCTTAGT+AGG | - | chr5.1:1587473-1587492 | MS.gene058069:CDS | 40.0% | |
| GAATCCGATGAGAATGAGAA+TGG | - | chr5.1:1586628-1586647 | MS.gene058069:CDS | 40.0% | |
| GAGTCTCATCAAAGGAAAGA+CGG | - | chr5.1:1587199-1587218 | MS.gene058069:CDS | 40.0% | |
| GCACTCGGAACCAAAATAAT+CGG | + | chr5.1:1587340-1587359 | None:intergenic | 40.0% | |
| GCATAGCAGTAGTTAGAACA+AGG | + | chr5.1:1587845-1587864 | None:intergenic | 40.0% | |
| GCCTTAACCTTAACATCAGT+AGG | + | chr5.1:1587424-1587443 | None:intergenic | 40.0% | |
| GGATCCATTCTCATTCTCAT+CGG | + | chr5.1:1586635-1586654 | None:intergenic | 40.0% | |
| GTTAAGGTTAAGGCGATGAA+AGG | - | chr5.1:1587430-1587449 | MS.gene058069:CDS | 40.0% | |
| TGAATTAGAATCACCACCGT+TGG | - | chr5.1:1587045-1587064 | MS.gene058069:CDS | 40.0% | |
| TTGGAGAGAAGAAGGTTCAT+CGG | + | chr5.1:1586987-1587006 | None:intergenic | 40.0% | |
| TTTGTCTAAGTCGCCTCTAA+TGG | + | chr5.1:1586681-1586700 | None:intergenic | 40.0% | |
| !! | TAGGAAATTGAGAGTGCTGT+TGG | + | chr5.1:1587006-1587025 | None:intergenic | 40.0% |
| !! | TGTTGTCGCGGTTTTTGTTT+TGG | - | chr5.1:1587564-1587583 | MS.gene058069:CDS | 40.0% |
| !!! | AATTGGTTTTCGATCAGGGA+GGG | + | chr5.1:1586894-1586913 | None:intergenic | 40.0% |
| !!! | ATGGGAAGTGCTGATGATTT+TGG | - | chr5.1:1587244-1587263 | MS.gene058069:CDS | 40.0% |
| !!! | CGAAGGTGTTCCGATTATTT+TGG | - | chr5.1:1587327-1587346 | MS.gene058069:CDS | 40.0% |
| !!! | GTTCAAGGATTGGCCTTTTA+AGG | - | chr5.1:1587600-1587619 | MS.gene058069:CDS | 40.0% |
| !!! | GTTGTCGCGGTTTTTGTTTT+GGG | - | chr5.1:1587565-1587584 | MS.gene058069:CDS | 40.0% |
| AAATCACGGAGGAGGGTTAA+GGG | + | chr5.1:1586656-1586675 | None:intergenic | 45.0% | |
| AACAGCTTATCGCTCCACAA+AGG | - | chr5.1:1586763-1586782 | MS.gene058069:intron | 45.0% | |
| AACGGAAGTTACCGTTGAGA+CGG | + | chr5.1:1586709-1586728 | None:intergenic | 45.0% | |
| AATGGTGAAATCACGGAGGA+GGG | + | chr5.1:1586663-1586682 | None:intergenic | 45.0% | |
| ACAGCTTATCGCTCCACAAA+GGG | - | chr5.1:1586764-1586783 | MS.gene058069:intron | 45.0% | |
| AGAGATTCACGATCCTTGAG+TGG | + | chr5.1:1587103-1587122 | None:intergenic | 45.0% | |
| AGGTGTAATCTTCGCCGAAA+CGG | + | chr5.1:1586727-1586746 | None:intergenic | 45.0% | |
| CGCCTCTAATGGTGAAATCA+CGG | + | chr5.1:1586670-1586689 | None:intergenic | 45.0% | |
| CTCAACGGTAACTTCCGTTT+CGG | - | chr5.1:1586710-1586729 | MS.gene058069:intron | 45.0% | |
| CTCCGTGATTTCACCATTAG+AGG | - | chr5.1:1586665-1586684 | MS.gene058069:CDS | 45.0% | |
| CTCTAATGGTGAAATCACGG+AGG | + | chr5.1:1586667-1586686 | None:intergenic | 45.0% | |
| GAAAATACTCGGCGTGTTTG+AGG | + | chr5.1:1586838-1586857 | None:intergenic | 45.0% | |
| GACAAAATCGTCCGTCTCAA+CGG | - | chr5.1:1586695-1586714 | MS.gene058069:CDS | 45.0% | |
| TAATGGTGAAATCACGGAGG+AGG | + | chr5.1:1586664-1586683 | None:intergenic | 45.0% | |
| TGCGCTTAAACCTGAGGATT+GGG | - | chr5.1:1587537-1587556 | MS.gene058069:CDS | 45.0% | |
| TGGAGAGAAGAAGGTTCATC+GGG | + | chr5.1:1586986-1587005 | None:intergenic | 45.0% | |
| ! | AGGATTGGCAGTTCAAGGAT+TGG | - | chr5.1:1587590-1587609 | MS.gene058069:CDS | 45.0% |
| ! | TTTTCGATCAGGGAGGGTTA+CGG | + | chr5.1:1586888-1586907 | None:intergenic | 45.0% |
| !! | ACGGGTTAGTTGCTAAGAGT+AGG | - | chr5.1:1587218-1587237 | MS.gene058069:CDS | 45.0% |
| !!! | CGCGGTTTTTGTTTTGGGAA+AGG | - | chr5.1:1587570-1587589 | MS.gene058069:CDS | 45.0% |
| !!! | GAATTGGTTTTCGATCAGGG+AGG | + | chr5.1:1586895-1586914 | None:intergenic | 45.0% |
| !!! | GGAAGTGCTGATGATTTTGG+TGG | - | chr5.1:1587247-1587266 | MS.gene058069:CDS | 45.0% |
| AACAGCTGAGAAGCCACTCA+AGG | - | chr5.1:1587087-1587106 | MS.gene058069:CDS | 50.0% | |
| ACAACACGATCCCAATCCTC+AGG | + | chr5.1:1587550-1587569 | None:intergenic | 50.0% | |
| AGAACAAGCGGCATCAAGAC+AGG | - | chr5.1:1587932-1587951 | MS.gene058069:CDS | 50.0% | |
| AGTGTAGCGGTTTCCCTTTG+TGG | + | chr5.1:1586780-1586799 | None:intergenic | 50.0% | |
| CTGCGCTTAAACCTGAGGAT+TGG | - | chr5.1:1587536-1587555 | MS.gene058069:CDS | 50.0% | |
| GAAATCACGGAGGAGGGTTA+AGG | + | chr5.1:1586657-1586676 | None:intergenic | 50.0% | |
| GAACAAGCGGCATCAAGACA+GGG | - | chr5.1:1587933-1587952 | MS.gene058069:CDS | 50.0% | |
| GGAGAGAAGAAGGTTCATCG+GGG | + | chr5.1:1586985-1587004 | None:intergenic | 50.0% | |
| TCCTCAGGTTTAAGCGCAGA+AGG | + | chr5.1:1587535-1587554 | None:intergenic | 50.0% | |
| ! | AAGCTGTTTCGAGGGAGCAA+GGG | + | chr5.1:1586751-1586770 | None:intergenic | 50.0% |
| ! | CTAGGGTTTCGAGAGTGTAG+CGG | + | chr5.1:1586793-1586812 | None:intergenic | 50.0% |
| ! | GAGTGCTGTTGGAGAGAAGA+AGG | + | chr5.1:1586995-1587014 | None:intergenic | 50.0% |
| ! | GGAGCGATAAGCTGTTTCGA+GGG | + | chr5.1:1586759-1586778 | None:intergenic | 50.0% |
| ! | GGGAAAGGATTGGCAGTTCA+AGG | - | chr5.1:1587585-1587604 | MS.gene058069:CDS | 50.0% |
| ! | TAAGCTGTTTCGAGGGAGCA+AGG | + | chr5.1:1586752-1586771 | None:intergenic | 50.0% |
| ! | TGGAGCGATAAGCTGTTTCG+AGG | + | chr5.1:1586760-1586779 | None:intergenic | 50.0% |
| AGAGGGCGGAGTCTCATCAA+AGG | - | chr5.1:1587191-1587210 | MS.gene058069:CDS | 55.0% | |
| ATCGGGGATCGAAGGCTGTT+CGG | + | chr5.1:1586969-1586988 | None:intergenic | 55.0% | |
| CTGCGAAGACTGTGAAGCAG+TGG | - | chr5.1:1587790-1587809 | MS.gene058069:CDS | 55.0% | |
| GAAGGTTCATCGGGGATCGA+AGG | + | chr5.1:1586977-1586996 | None:intergenic | 55.0% | |
| GATCAGGGAGGGTTACGGAA+GGG | + | chr5.1:1586883-1586902 | None:intergenic | 55.0% | |
| GCCTTCTGCGCTTAAACCTG+AGG | - | chr5.1:1587531-1587550 | MS.gene058069:CDS | 55.0% | |
| GGATTGGGATCGTGTTGTCG+CGG | - | chr5.1:1587552-1587571 | MS.gene058069:CDS | 55.0% | |
| TGCGGCTACTAAACGCGAAG+AGG | - | chr5.1:1587162-1587181 | MS.gene058069:CDS | 55.0% | |
| TGTTTCGAGGGAGCAAGGGA+AGG | + | chr5.1:1586747-1586766 | None:intergenic | 55.0% | |
| ! | ATTGGAGGTGTGGGACAGAC+TGG | - | chr5.1:1587963-1587982 | MS.gene058069:CDS | 55.0% |
| !! | GGCGATGAAAGGTGCTAAGC+CGG | - | chr5.1:1587441-1587460 | MS.gene058069:CDS | 55.0% |
| CGATCAGGGAGGGTTACGGA+AGG | + | chr5.1:1586884-1586903 | None:intergenic | 60.0% | |
| TCAAGACAGGGCTGCGGCAT+TGG | - | chr5.1:1587945-1587964 | MS.gene058069:CDS | 60.0% | |
| TCGGGGATCGAAGGCTGTTC+GGG | + | chr5.1:1586968-1586987 | None:intergenic | 60.0% | |
| !! | AACGCGAAGAGGAGCGTCAG+AGG | - | chr5.1:1587173-1587192 | MS.gene058069:CDS | 60.0% |
| !! | ACGCGAAGAGGAGCGTCAGA+GGG | - | chr5.1:1587174-1587193 | MS.gene058069:CDS | 60.0% |
| CGGGGATCGAAGGCTGTTCG+GGG | + | chr5.1:1586967-1586986 | None:intergenic | 65.0% | |
| GCGGCATCAAGACAGGGCTG+CGG | - | chr5.1:1587939-1587958 | MS.gene058069:CDS | 65.0% | |
| ! | AGACAGGGCTGCGGCATTGG+AGG | - | chr5.1:1587948-1587967 | MS.gene058069:CDS | 65.0% |
| ! | GGCTGCGGCATTGGAGGTGT+GGG | - | chr5.1:1587954-1587973 | MS.gene058069:CDS | 65.0% |
| !! | CGAAGAGGAGCGTCAGAGGG+CGG | - | chr5.1:1587177-1587196 | MS.gene058069:CDS | 65.0% |
| ! | GGGCTGCGGCATTGGAGGTG+TGG | - | chr5.1:1587953-1587972 | MS.gene058069:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1586626 | 1588017 | 1586626 | ID=MS.gene058069 |
| chr5.1 | mRNA | 1586626 | 1588017 | 1586626 | ID=MS.gene058069.t1;Parent=MS.gene058069 |
| chr5.1 | exon | 1586997 | 1588017 | 1586997 | ID=MS.gene058069.t1.exon1;Parent=MS.gene058069.t1 |
| chr5.1 | CDS | 1586997 | 1588017 | 1586997 | ID=cds.MS.gene058069.t1;Parent=MS.gene058069.t1 |
| chr5.1 | exon | 1586813 | 1586895 | 1586813 | ID=MS.gene058069.t1.exon2;Parent=MS.gene058069.t1 |
| chr5.1 | CDS | 1586813 | 1586895 | 1586813 | ID=cds.MS.gene058069.t1;Parent=MS.gene058069.t1 |
| chr5.1 | exon | 1586626 | 1586718 | 1586626 | ID=MS.gene058069.t1.exon3;Parent=MS.gene058069.t1 |
| chr5.1 | CDS | 1586626 | 1586718 | 1586626 | ID=cds.MS.gene058069.t1;Parent=MS.gene058069.t1 |
| Gene Sequence |
| Protein sequence |
